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From 09/13/2022 to 10/12/2022

10/12/2022

03:38 PM feature request #10161: Deduplicate nom. status in publication if there are >1 entries with same status
AM:
Bei E+M machen wir das alternativ so, dass es einen zusätzlichen Status „nom. & orth. cons.“ haben. Das finde ic...
Andreas Müller
03:32 PM feature request #10161: Deduplicate nom. status in publication if there are >1 entries with same status
WGB:
Im Search treten da dann auch noch zwei Kommata auf:
![](clipboard-202210121532-m0efc.png)
Andreas Müller
03:31 PM feature request #10161: Deduplicate nom. status in publication if there are >1 entries with same status
We may also "deduplicate" "nom. cons., orth. cons." to "nom. & orth. cons." (required e.g. for cuba). Alternatively w... Andreas Müller
03:27 PM bug #10155: Preference for default language of shown representations
Now, the language shown in flora-cuba as default is Gwich'in which is for sure not the expected one. Also the list se... Andreas Müller
09:34 AM bug #10114 (Closed): Problem with parser for author string with whitespace between initials
Also the sortindex updater works as expected now.
Andreas Müller
09:25 AM bug #10163: Fix label for "Orthography Conserved" and "Conserved Desig"
~~~
SELECT ns.id, tn.fullTitleCache, tn.created, tn.createdBy_id, tn.updated
FROM DefinedTermBase dtb INNER JOIN ...
Andreas Müller
08:47 AM bug #10163: Fix label for "Orthography Conserved" and "Conserved Desig"
Andreas Müller wrote in #note-3:
> Still needs to switch to schema version 5.33 and after release check databases fo...
Andreas Müller
08:26 AM bug #10163 (Closed): Fix label for "Orthography Conserved" and "Conserved Desig"
This seems to work as expected now. Andreas Müller
09:08 AM bug #10137: Compressed table does not show derivates anymore
Katja Luther wrote in #note-14:
> ...
> I did not find any tests, but maybe it is easier to write the tests on cdml...
Andreas Müller
09:06 AM bug #10137: Compressed table does not show derivates anymore
Katja Luther wrote in #note-13:
>...
> I will create a new ticket to think about how we can do this in a better way, ...
Andreas Müller
08:54 AM bug #10169 (Closed): Exception when collapse and reopen language tree in preferences after deselect
Works as expected now. Andreas Müller
08:49 AM bug #10130 (Closed): Error Message in dataportal
Andreas Müller wrote in #note-4:
> Sorry, I didn't see that this is solved already. So probably we do not necessaril...
Andreas Müller

10/11/2022

06:02 PM Revision 5d3d2f41 (taxeditor): ref #10055, ref #10072 upgrade to log4j2 2.19.0 in taxeditor
Andreas Müller
06:00 PM Revision 24cddd2e (cdm-server): ref #10055, ref #10072 upgrade to log4j2 2.19.0 in cdmserver
Andreas Müller
06:00 PM Revision d2106d33 (cdm-dataportal): ref #10055, ref #10072 upgrade to log4j2 2.19.0 in dataportal
Andreas Müller
05:58 PM Revision 517fdd76 (cdmlib): ref #10055, ref #10072 upgrade to log4j2 2.19.0 in cdmlib
Andreas Müller
05:44 PM bug #10167: Selecting an existing name and adding a new journal does not work for phycobank registration
WHK:
Ich habe jetzt als Submitter mit beschränkten Rechten ein paar Fälle getestet. Inzwischen geht dort Einiges a...
Andreas Müller
01:58 PM bug #3536 (In Progress): Incorrect last version documentation for Editor
Unfortunately this still did not work. The URL still exists. Andreas Müller

10/10/2022

03:19 PM Revision 1210a8a7 (cdm-server): Merge branch 'release/5.33.0' into develop
jenkins
03:19 PM Revision 5ef5639c (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
03:18 PM Revision de8aecf8 (cdm-server): updating poms for branch'release/5.33.0' with non-snapshot versions
jenkins
03:18 PM Revision a9737b94 (cdm-webapp): Merge branch 'release/5.33.0' into develop
jenkins
03:18 PM Revision e23d518a (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
03:17 PM Revision 796b7317 (cdm-webapp): updating poms for branch'release/5.33.0' with non-snapshot versions
jenkins
03:17 PM Revision f61e8284 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.33.0
jenkins
03:17 PM Revision fe12512b (cdm-vaadin): Merge branch 'release/5.33.0' into develop
jenkins
03:17 PM Revision d1f6c130 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
03:17 PM Revision 7b474ec8 (taxeditor): Merge branch 'release/5.33.0' into develop
jenkins
03:17 PM Revision 18185b7b (taxeditor): Merge branch 'release/5.33.0'
jenkins
03:14 PM Revision ed066693 (cdm-dataportal): Merge branch 'release/5.33.0' into develop
jenkins
03:14 PM Revision f142028d (cdm-dataportal): updating poms for branch'release/5.33.0' with non-snapshot versions
jenkins
03:14 PM Revision ed286abd (cdm-vaadin): updating poms for branch'release/5.33.0' with non-snapshot versions
jenkins
03:14 PM Revision 81a940dd (cdm-dataportal): release-preparation: production level css
jenkins
03:14 PM Revision 15f337cc (cdm-vaadin): jenkins bumping cdmlib.version to 5.33.0
jenkins
03:13 PM Revision 884c054b (cdmlib): Updating develop poms back to pre merge state
jenkins
03:13 PM Revision 80f9e3ec (cdmlib): Merge branch 'master' into develop
jenkins
03:13 PM Revision b6f9776b (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:13 PM Revision d2860136 (cdmlib): Merge branch 'release/5.33.0'
jenkins
02:59 PM Revision 1a950a85 (cdmlib): updating poms for branch'release/5.33.0' with non-snapshot versions
jenkins
02:29 PM Revision f9c23b4b (cdmlib): cleanup
Andreas Müller
02:16 PM Revision 59d59755 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.33.0-SNAPSHOT
jenkins
02:16 PM Revision 7aebcea7 (cdm-webapp): updating poms for 5.34.0-SNAPSHOT development
jenkins
02:16 PM Revision 6ecba9db (cdm-webapp): updating poms for 5.33.0 branch with snapshot versions
jenkins
02:16 PM Revision b88cb455 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.34.0-SNAPSHOT
jenkins
02:15 PM Revision e1b5318b (taxeditor): Updated version in pom / project files to taxeditor version : 5.34.0-SNAPSHOT and cdmlib version : 5.34.0-SNAPSHOT
jenkins
02:14 PM Revision 0390674c (taxeditor): Updated version in pom / project files to taxeditor version : 5.33.0 and cdmlib version : 5.33.0
jenkins
02:14 PM Revision bcc2cf4d (cdm-vaadin): jenkins bumping cdmlib.version to 5.33.0-SNAPSHOT
jenkins
02:14 PM Revision 83ba03c6 (cdm-vaadin): updating poms for 5.34.0-SNAPSHOT development
jenkins
02:14 PM Revision a3ae40d1 (cdm-vaadin): updating poms for 5.33.0 branch with snapshot versions
jenkins
02:13 PM Revision 2ce8a5ea (cdm-vaadin): jenkins bumping cdmlib.version to 5.34.0-SNAPSHOT
jenkins
02:13 PM Revision bbc91d7d (cdm-dataportal): updating poms for 5.34.0-SNAPSHOT development
jenkins
02:13 PM Revision de130602 (cdm-server): updating poms for 5.34.0-SNAPSHOT development
jenkins
02:10 PM Revision 20e49527 (cdmlib): updating poms for 5.34.0-SNAPSHOT development
jenkins
02:07 PM bug #10163: Fix label for "Orthography Conserved" and "Conserved Desig"
~~~
SELECT dtb. UUID, dtb.id, dtb.titleCache, r.label, r.abbreviatedlabel, r.text
FROM DefinedTermBase dtb INNER JO...
Andreas Müller
02:02 PM Revision 770e7be3 (cdmlib): code cleaning
Katja Luther
01:55 PM bug #10114 (Resolved): Problem with parser for author string with whitespace between initials
Katja Luther wrote in #note-15:
> Problems with the parsing of names seem to be solved. The problem with the sortind...
Katja Luther
10:55 AM bug #10114 (Feedback): Problem with parser for author string with whitespace between initials
Problems with the parsing of names seem to be solved. The problem with the sortindex updater still exist. Katja Luther
01:52 PM Revision 100c74ca (cdmlib): ref #10114: add transactional readonly= false to sortindex updater doInvoke method
Katja Luther
10:58 AM task #7404: Add linux and mac to editor installation documentation
Katja Luther wrote in #note-15:
> Andreas Müller wrote in #note-13:
> > In chapter 1 there is still missing informa...
Andreas Müller
10:12 AM Revision 01035329 (cdm-vaadin): ref #10167 update vaadin h2
Andreas Müller
10:11 AM Revision dd5651b5 (cdm-vaadin): cleanup
Andreas Müller
10:10 AM Revision fa4b1a64 (taxeditor): fix #10163: update taxeditor h2
Andreas Müller
10:07 AM Revision 06843967 (cdmlib): cleanup
Andreas Müller
10:06 AM Revision 7c24f116 (cdmlib): ref #10163 move model to v5.33
Andreas Müller

10/07/2022

03:53 PM bug #6228 (Closed): Fix behavior of multi-language editing
Andreas Müller wrote in #note-23:
> More or less everything is fixed (except for the filter for the default language...
Katja Luther
12:53 PM bug #6228 (Feedback): Fix behavior of multi-language editing
More or less everything is fixed (except for the filter for the default language as mentioned above).
Only I wonde...
Andreas Müller
03:31 PM task #7404: Add linux and mac to editor installation documentation
Andreas Müller wrote in #note-13:
> In chapter 1 there is still missing information which version is the recommended...
Katja Luther
03:25 PM bug #10135 (Closed): Created_by and when is missing for User and Group
Katja Luther
03:14 PM bug #10114: Problem with parser for author string with whitespace between initials
The nomenclatural reference problem seems to be solved, I could not reproduce it anymore. Katja Luther
02:50 PM bug #10114: Problem with parser for author string with whitespace between initials
Another appearance from Nadja:
ich bekomme diese Fehlermeldung wenn ich ganz normal eine nomenklatorische Referenz e...
Katja Luther
02:37 PM bug #10114: Problem with parser for author string with whitespace between initials
Andreas Müller wrote in #note-11:
> Katja Luther wrote in #note-2:
> > This exception also appears when trying to u...
Katja Luther
11:52 AM bug #10169: Exception when collapse and reopen language tree in preferences after deselect
please review. Katja Luther
11:51 AM bug #10169 (Resolved): Exception when collapse and reopen language tree in preferences after deselect
Applied in changeset commit:taxeditor|234cba577d9687d4ba76c2ffb55c873096376acd. Katja Luther
11:48 AM bug #10169 (Closed): Exception when collapse and reopen language tree in preferences after deselect
mail AM:
Das passiert, wenn ich vorher eine Sprache (im Vokabular ISO 639-2) deselecte und dann versuche ein (ande...
Katja Luther
11:50 AM Revision 234cba57 (taxeditor): fix #10169: checkedElements should not contain null values
Katja Luther
11:43 AM bug #10116 (Closed): Create a new name denied for users
Andreas Müller
11:31 AM bug #10116: Create a new name denied for users
Description (was): Blocker (2, role user),
Not able to create a new name in a given reference (submitted by curator...
Wolf-Henning Kusber

10/06/2022

03:47 PM bug #10114: Problem with parser for author string with whitespace between initials
Katja Luther wrote in #note-2:
> This exception also appears when trying to update sortindex in caryo_amaranthaceae....
Andreas Müller
03:36 PM bug #10114: Problem with parser for author string with whitespace between initials
This is hopefully fixed. Can you please review? Andreas Müller
03:35 PM bug #10114 (Resolved): Problem with parser for author string with whitespace between initials
Applied in changeset commit:cdmlib|25e433f2a4b506913253961cfea7a931b11afa1b. Andreas Müller
02:58 PM bug #10114: Problem with parser for author string with whitespace between initials
KL:
in der Methode CdmGenericDaoImpl.findMatching() in Zeile 635 wird als erstes ein flush() aufgerufen, wenn man ...
Andreas Müller
03:35 PM Revision 29e14a56 (cdmlib): cleanup
Andreas Müller
03:34 PM Revision 25e433f2 (cdmlib): fix #10114 possibliy fix read-only issue during serverside name parsing
Andreas Müller
01:05 PM Revision 27d6e65a (cdm-dataportal): ref #10156: do not show preference for field unit media as long as it does not work
Katja Luther
09:34 AM bug #10108 (Closed): Description for MediaSpecimen not shown even if it exists (i18n)
Katja Luther
09:31 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
Generally this seems to be fully fixed and can be closed if you agree to my latest change. Andreas Müller
09:28 AM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
Not sure if LanguageStringBase().getText() can not be null therefore adapted code to avoid potential NPEs. Please rev... Andreas Müller
09:25 AM Revision 65caac45 (taxeditor): cleanup
Andreas Müller
09:24 AM Revision 0b629053 (taxeditor): ref #10108 avoid NPE in MediaSpecimenGeneralDetailElement
Andreas Müller
08:52 AM bug #10167 (In Progress): Selecting an existing name and adding a new journal does not work for phycobank registration
Andreas Müller
08:50 AM bug #10160 (Closed): Reactivate preference to open new window for every search
Works as expected Andreas Müller

10/05/2022

07:07 PM Revision 015a74aa (cdm-vaadin): cleanup
Andreas Müller
06:31 PM Revision e24c385e (cdm-vaadin): ref #10167 preliminary set logging to readonly handling in TaxonNamePopupEditor(cont.)
Andreas Müller
06:30 PM Revision 889e8684 (cdm-vaadin): cleanup
Andreas Müller
05:12 PM bug #10168 (In Progress): Name Type designation with restricted select list
Andreas Müller
04:32 PM bug #10168 (Closed): Name Type designation with restricted select list
Vaadin PhycoBank
Kusber, W.-H.: Testuser Title3. – Acta Bot. Croat.
New genus Neuiopsis
New species Neuiopsis vu...
Wolf-Henning Kusber
04:16 PM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller wrote in #note-23:
> Field size is ok now.
>
> It still shows the field in some cases though no text ...
Katja Luther
04:11 PM bug #6228 (Resolved): Fix behavior of multi-language editing
Katja Luther wrote in #note-21:
> Andreas Müller wrote in #note-20:
> > for review?
>
> maybe I will have a look...
Katja Luther
03:34 PM Revision c537bcc8 (taxeditor): ref #6228: improve translation wizard - fix getPreferredLanguage usage
Katja Luther
03:09 PM bug #10132 (Closed): Coding of special characters in Vaadin/PhycoBank (in docker instance only)
Katja Luther
03:07 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
Habe auch ein Sonderzeichen eingegeben, gespeichert und es wurde korrekt angezeigt (bei einem nicht publizierten Record) Wolf-Henning Kusber
03:03 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
coding now correct. Ticket can be closed. Wolf-Henning Kusber
03:01 PM bug #10132 (Resolved): Coding of special characters in Vaadin/PhycoBank (in docker instance only)
Please review Katja Luther
03:03 PM bug #10160 (Resolved): Reactivate preference to open new window for every search
please review Katja Luther
01:21 PM bug #10166 (Closed): Textfield for protected titlecache trims blanks
Works as expected Andreas Müller
10:20 AM bug #10166: Textfield for protected titlecache trims blanks
please review Katja Luther
09:55 AM bug #10166 (Resolved): Textfield for protected titlecache trims blanks
Applied in changeset commit:taxeditor|c9373ffb0fc710e3afc702d2404f66fbffc567ad. Katja Luther
09:54 AM bug #10166 (Closed): Textfield for protected titlecache trims blanks
mail AM:
ich habe gerade festgestellt, dass sich im protected titleCache eines Specimen am Ende kein Leerzeichen e...
Katja Luther
01:14 PM bug #10141 (Closed): Exception (CCE) caused by logging setLevel in phycobank
Andreas Müller
11:36 AM bug #10141: Exception (CCE) caused by logging setLevel in phycobank
Test System (tested 05 Oct 2022):ticket can be closed.
create new in author in Vaadin: function as expecte. Bug fixe...
Wolf-Henning Kusber
10:47 AM Revision c5a6d29f (cdm-vaadin): ref #10167 preliminary set logging to readonly handling in TaxonNamePopupEditor
Andreas Müller
10:47 AM Revision 72620c6a (cdm-vaadin): cleanup
Andreas Müller
10:21 AM bug #10116 (Resolved): Create a new name denied for users
Wolf-Henning Kusber wrote in #note-15:
> Not working as expected (user):
>
> User wants to use an existing name t...
Andreas Müller
10:18 AM bug #10165: email and person data are not stored when creating a new account
Works as expected. Tested on test server. Andreas Müller
10:17 AM bug #10165 (Closed): email and person data are not stored when creating a new account
Andreas Müller
01:50 AM bug #10165 (Resolved): email and person data are not stored when creating a new account
Applied in changeset commit:cdmlib|42e3f9ecb74ba93769caf96e749a0c036f7e0004. Andreas Müller
01:48 AM bug #10165 (Closed): email and person data are not stored when creating a new account
Andreas Müller
10:15 AM bug #10167 (Closed): Selecting an existing name and adding a new journal does not work for phycobank registration
copied from #10116#note-15
Not working as expected (user):
User wants to use an existing name to insert a new l...
Andreas Müller
09:55 AM Revision c9373ffb (taxeditor): fix #10166: fix behaviour of titlecache field for specimen
Katja Luther
09:39 AM Revision 9924b62a (cdm-vaadin): cleanup
Andreas Müller
09:36 AM bug #10137: Compressed table does not show derivates anymore
Andreas Müller wrote in #note-12:
> The tests did all successfully run in dataportal.
> Is there already a test tha...
Katja Luther
09:34 AM bug #10137: Compressed table does not show derivates anymore

Andreas Müller wrote in #note-10:
> A minor issue: the country column has a right alignent now whereas it had a midd...
Katja Luther
02:30 AM Revision 13ae6bf5 (cdm-vaadin): cleanup
Andreas Müller
02:14 AM bug #7858: names used in the TaxonGraph can not be deleted if the user has no DELETE permission on Taxon
Also
```
remove withDeleteButton(false);
```
in TaxonNamePopupEditor after fixing
Andreas Müller
01:49 AM Revision 42e3f9ec (cdmlib): fix #10165, ref #10116 save email and person data when creating a new account
Andreas Müller
01:44 AM Revision debdf8b6 (cdmlib): cleanup
Andreas Müller

10/04/2022

05:48 PM bug #10164 (Duplicate): Self registration failed with AuthenticationCredentialsNotFoundException
This was caused by the first fix for #10116. Therefore I close it as duplicate and remove target version as it is not... Andreas Müller
05:45 PM bug #10164 (Resolved): Self registration failed with AuthenticationCredentialsNotFoundException
Applied in changeset commit:cdmlib|ab21be07c6d6f3334d4719b48a8f8b4010a7f38b. Andreas Müller
05:27 PM bug #10164 (Duplicate): Self registration failed with AuthenticationCredentialsNotFoundException
... on test (https://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!login/dashboard)
* I did choose regi...
Andreas Müller
05:45 PM Revision 0f229805 (cdmlib): cleanup
Andreas Müller
05:44 PM Revision ab21be07 (cdmlib): fix #10164, ref #10116 fix authentication token issue in self registration
Andreas Müller
04:48 PM bug #10137: Compressed table does not show derivates anymore
The tests did all successfully run in dataportal.
Is there already a test that fails if collection "CBFS" or label "...
Andreas Müller
04:34 PM bug #10137: Compressed table does not show derivates anymore
Generally it works as expected and ticket can be closed if alignment ist fixed.
I added a further derivate to field ...
Andreas Müller
04:30 PM bug #10137 (Feedback): Compressed table does not show derivates anymore
A minor issue: the country column has a right alignent now whereas it had a middle alignement before as you can see f... Andreas Müller
04:40 PM bug #10132 (Feedback): Coding of special characters in Vaadin/PhycoBank (in docker instance only)
Katja Luther wrote in #note-7:
> I tested a fresh docker installation in my VM and with this instance it does not ma...
Andreas Müller
04:14 PM bug #6228: Fix behavior of multi-language editing
Andreas Müller wrote in #note-20:
> for review?
maybe I will have a look with nightly before.
Katja Luther
04:08 PM bug #6228: Fix behavior of multi-language editing
for review? Andreas Müller
03:49 PM bug #6228: Fix behavior of multi-language editing
Andreas Müller wrote in #note-18:
> Everything works correct now except for the ride side of the translation editor
>...
Katja Luther
04:02 PM bug #8431: missing status bar for cdm light export
Noch ein neuer Punkt:
bei CDM-light stimmt die Prozentanzeige in der Statusleiste nicht mit der in der Progress-Vi...
Andreas Müller
03:49 PM Revision 207c5999 (taxeditor): ref #6228: improve translation wizard - continue
Katja Luther
03:48 PM Revision e7529454 (taxeditor): ref #6228: improve translation wizard
Katja Luther
01:58 PM Revision c1593bb9 (taxeditor): avoid NPE in agent selection dialog
Katja Luther
01:42 PM Revision 562cf06b (taxeditor): ref #10160: search only for local preference
Katja Luther
01:31 PM Revision 7d2b4420 (taxeditor): remove whitespaces from file name of cdmLight export
Katja Luther
11:47 AM Revision 6cd36c50 (cdm-dataportal): ref #10156: check whether the variable exist
Katja Luther
10:59 AM bug #10135: Created_by and when is missing for User and Group
Katja Luther wrote in #note-11:
> Andreas Müller wrote in #note-9:
>...
>
> But this is the same as before. Then...
Andreas Müller
10:24 AM bug #10135: Created_by and when is missing for User and Group
Andreas Müller wrote in #note-9:
> Final issue: there is still a relatively large gap before UUID for VersionableEnt...
Katja Luther

10/01/2022

10:36 AM Revision 95504cb1 (cdmlib): cleanup
Andreas Müller
10:35 AM Revision 942588ed (cdmlib): ref #10116 add group submitter to self-registered user if it exists
Andreas Müller
09:51 AM Revision 7cfab6d6 (cdmlib): rename package for VocabularyTreeCreator
Andreas Müller

09/30/2022

06:57 PM bug #6228 (Feedback): Fix behavior of multi-language editing
Everything works correct now except for the ride side of the translation editor
1. When opening the trans-editor t...
Andreas Müller
05:13 PM bug #10135 (Feedback): Created_by and when is missing for User and Group
Andreas Müller
05:12 PM bug #10135: Created_by and when is missing for User and Group
Final issue: there is still a relatively large gap before UUID for VersionableEntities:
![](clipboard-202209301711...
Andreas Müller
11:50 AM bug #10135 (Resolved): Created_by and when is missing for User and Group
Katja Luther
11:50 AM bug #10135: Created_by and when is missing for User and Group
Andreas Müller wrote in #note-6:
> Actually the gap does not look nice and more important it requires more scrolling...
Katja Luther
11:05 AM bug #10135 (Feedback): Created_by and when is missing for User and Group
Actually the gap does not look nice and more important it requires more scrolling when trying to read the ID and UUID... Andreas Müller
05:09 PM bug #10160 (Feedback): Reactivate preference to open new window for every search
Katja Luther wrote in #note-9:
> Andreas Müller wrote in #note-8:
> > Andreas Müller wrote in #note-6:
> > > After...
Andreas Müller
12:39 PM bug #10160 (Resolved): Reactivate preference to open new window for every search
Andreas Müller wrote in #note-8:
> Andreas Müller wrote in #note-6:
> > After activating the preference a new windo...
Katja Luther
12:28 PM bug #10160 (Feedback): Reactivate preference to open new window for every search
Andreas Müller wrote in #note-6:
> After activating the preference a new window is not opened after running the sear...
Andreas Müller
12:01 PM bug #10160 (Resolved): Reactivate preference to open new window for every search
Andreas Müller wrote in #note-6:
> After activating the preference a new window is not opened after running the sear...
Katja Luther
11:44 AM bug #10160: Reactivate preference to open new window for every search
After activating the preference a new window is not opened after running the search a second time. Andreas Müller
11:17 AM bug #10160: Reactivate preference to open new window for every search
It was on top level before we cleaned-up the preferences. I think we should put it to search. At least that was the f... Andreas Müller
11:05 AM bug #10160: Reactivate preference to open new window for every search
Andreas Müller wrote in #note-2:
> I can't find the preferences. Please leave a message where to find it.
It is i...
Katja Luther
10:56 AM bug #10160 (Feedback): Reactivate preference to open new window for every search
I can't find the preferences. Please leave a message where to find it. Andreas Müller
05:01 PM bug #10163: Fix label for "Orthography Conserved" and "Conserved Desig"
Still needs to switch to schema version 5.33 and after release check databases for possibly incorrect data. Andreas Müller
05:00 PM bug #10163 (Resolved): Fix label for "Orthography Conserved" and "Conserved Desig"
Applied in changeset commit:cdmlib|781c088070cf405452780604dc9358046e0c35e8. Andreas Müller
04:42 PM bug #10163 (Closed): Fix label for "Orthography Conserved" and "Conserved Desig"
When fixing #9311 the label update for "Conserved Desig => Conservation Designated" went wrong as the wrong term was ... Andreas Müller
05:00 PM Revision 781c0880 (cdmlib): fix #10163 fix labels for "Orthography Conserved" and "Conserved Desig"
Andreas Müller
04:00 PM Revision 9139abb2 (cdmlib): cleanup
Andreas Müller
01:54 PM task #7404 (Feedback): Add linux and mac to editor installation documentation
In chapter 1 there is still missing information which version is the recommended version for linux. Do we have any re... Andreas Müller
01:28 PM Revision f73a47f6 (cdmlib): ref #10156: call service method with parameter
Katja Luther
01:01 PM bug #10107 (Closed): i18n bug when editing media not having a default language title
Seems to work as expected, now. Andreas Müller
12:51 PM bug #10121 (Worksforme): ConstraintViolationException when editing placement notes
Could not reproduce it anymore, tested add status -> close -> ok
set note (status already existed) -> close -> ok
...
Katja Luther
12:39 PM Revision 9186d805 (taxeditor): ref #10160: fix preference setting
Katja Luther
12:28 PM Revision c14a1327 (taxeditor): ref #10108: check whether text exist in descriptions
Katja Luther
12:19 PM bug #10162: Problems when deleting names involved in a namerelationship
mail WB:
Hallo,
nach dem CDM-L Export kam folgendes:
~~~
An unexpected error occurred when handling homotypic group...
Katja Luther
10:35 AM bug #10162 (New): Problems when deleting names involved in a namerelationship
Deleting of names with namerelationship results in namerelationship pointing to a not existing name. Katja Luther
12:01 PM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
Field size is ok now.
It still shows the field in some cases though no text exists. E.g.
![](clipboard-20220930...
Andreas Müller
12:01 PM Revision 75ce29f0 (taxeditor): ref #10160: move preference to search
Katja Luther
11:57 AM Revision 84cfbeed (taxeditor): ref #10135: remove createSection again and implement it in versionable and cdmBase element -continue
Katja Luther
11:51 AM bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
I think this is not as fast as it should be to implement it in this release, so I would move it to 5.35. Katja Luther
11:49 AM Revision a3db6d8c (taxeditor): ref #10135: remove createSection again and implement it in versionable and cdmBase element
Katja Luther
11:21 AM bug #10151 (Closed): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
Andreas Müller wrote in #note-7:
> Works as expected. Please still correct the label "Create Field Unit For selected...
Katja Luther
11:11 AM bug #10151 (Feedback): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
Works as expected. Please still correct the label "Create Field Unit For selected taxon" -> "Create field unit for se... Andreas Müller
11:20 AM Revision bee75d93 (taxeditor): ref #10151: fix menu label
Katja Luther
11:14 AM bug #10137 (Resolved): Compressed table does not show derivates anymore
I adapted the collection of the derivedUnitDtos and now all informations are shown again. Please have a look. (for ex... Katja Luther

09/29/2022

02:47 PM Revision 8f4ed895 (taxeditor): minor
Katja Luther
02:35 PM bug #10135 (Resolved): Created_by and when is missing for User and Group
Andreas Müller
02:06 PM bug #10135 (Feedback): Created_by and when is missing for User and Group
Katja Luther
01:59 PM bug #10135 (Resolved): Created_by and when is missing for User and Group
Applied in changeset commit:taxeditor|967f73857a25e5d92aae0450eb1363575cf26bec.
The implementation added a new secti...
Katja Luther
02:24 PM Revision c7aa8ed8 (cdmlib): ref #10156: adapt TaxonController - continue
Katja Luther
02:08 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
I tested a fresh docker installation in my VM and with this instance it does not make any problems, so I would uninst... Katja Luther
01:59 PM Revision 5d5d125e (taxeditor): ref #10135: add created and createdby to an extra section to keep it at the same place
Katja Luther
01:44 PM Revision 967f7385 (taxeditor): fix #10135: add created and createdby to supplemental data of cdmBase
Katja Luther
01:31 PM feature request #10156 (In Progress): Show field unit media in taxon image galleries
Added a parameter to the service methods to list also the media of the originals of a specimen or observation. Katja Luther
01:30 PM bug #10151: Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
Please review. Katja Luther
01:29 PM bug #10151 (Resolved): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
This is fixed now. Katja Luther
12:30 PM bug #10151 (In Progress): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
There was an own menu item for creating new field unit associated with the selected taxon. Need to find out why it is... Katja Luther
01:29 PM Revision 46b073fe (taxeditor): ref #10151: create field unit for selected taxon
Katja Luther
11:53 AM Revision 7ff10c66 (cdm-dataportal): ref #10156: adapt portal settings to possibility to show original media
Katja Luther
11:35 AM Revision b10b63a9 (cdmlib): ref #10156: adapt TaxonController
Katja Luther
11:21 AM Revision e56ebfbd (cdmlib): ref #10156: addOriginals to taxonServive.listMedia
Katja Luther
10:34 AM Revision 6a6849d6 (cdm-dataportal): ref #10137: add all derivates
Katja Luther
10:15 AM Revision a64c3fe4 (cdm-dataportal): ref #10137: missing parathesis
Katja Luther
10:09 AM Revision 17c7ac43 (cdm-dataportal): ref #10137: missing parathesis
Katja Luther
10:05 AM Revision db17326d (cdm-dataportal): ref #10137: test whether there are an icon for detail image
Katja Luther
09:51 AM Revision e5fafd55 (cdmlib): ref #10156: add parameter for collecting original media
Katja Luther
09:27 AM Revision 85a6d568 (cdm-dataportal): ref #10137: adapt table view test
Katja Luther
08:26 AM Revision 24febf9e (cdm-dataportal): ref #10137: adapt tree view test - missed to commit the second file
Katja Luther

09/28/2022

04:47 PM Revision e8031e81 (cdm-dataportal): ref #10137: adapt tree view test- continue
Katja Luther
04:23 PM Revision 9502ca1c (cdm-dataportal): ref #10137: adapt tree view test- continue
Katja Luther
04:07 PM Revision ad4ba907 (cdm-dataportal): ref #10137: adapt tree view test- continue
Katja Luther
03:32 PM Revision 748b197a (cdm-dataportal): ref #10137: adapt tree view test
Katja Luther
02:35 PM Revision 53230fa5 (cdm-dataportal): ref #10137: adapt test - conitnue
Katja Luther
02:33 PM Revision d6d42642 (cdm-dataportal): ref #10137: adapt test - conitnue
Katja Luther
02:15 PM Revision aed6dc27 (cdm-dataportal): ref #10137: adapt test
Katja Luther
12:53 PM Revision 61259bf0 (cdmlib): ref #10137: improve derivate handling in dtos
Katja Luther

09/27/2022

03:57 PM Revision 7950c5b2 (cdmlib): ref #10137: improve derivate handling in dtos
Katja Luther
12:39 PM Revision 25160230 (cdmlib): ref #10137: only derived unit associated to the taxon should be collected in rootUnitsforAssociatedTaxon and flags should also be added to parent dto
Katja Luther
12:38 PM Revision 5478f967 (cdmlib): minor
Katja Luther
11:53 AM Revision 51e0e683 (cdmlib): minor
Katja Luther

09/26/2022

06:52 PM Revision e9494e29 (cdmlib-apps): cleanup
Andreas Müller
05:12 PM Revision 6c1a422a (cdmlib): ref #10137: only derived unit associated to the taxon should be collected in rootUnitsforAssociatedTaxon
Katja Luther
04:21 PM Revision 096b0545 (cdm-dataportal): ref #10137: webservice call should be called only once
Katja Luther
01:57 PM Revision 1ceb5b58 (cdmlib): ref #10137: give the dna, character data etc information from derivate dto to original
Katja Luther

09/23/2022

08:34 AM bug #10137: Compressed table does not show derivates anymore
By the way, more astonishing I find that for on https://portal.cybertaxonomy.org/algaterra-new/cdm_dataportal/taxon/... Andreas Müller
08:23 AM bug #10137: Compressed table does not show derivates anymore
Katja Luther wrote in #note-6:
> The compressed table also shows wrong data:
> B 40 0042054 is shown as derivate wi...
Andreas Müller

09/22/2022

01:59 PM bug #10137: Compressed table does not show derivates anymore
The compressed table also shows wrong data:
B 40 0042054 is shown as derivate with determination Gomphonema truncatum...
Katja Luther

09/21/2022

01:05 AM feature request #10161 (Closed): Deduplicate nom. status in publication if there are >1 entries with same status
... this happens if there are >1 sources for the same status of the same name.
For now we may implement it as dedu...
Andreas Müller

09/20/2022

05:17 PM Revision ad52f6a0 (cdmlib): cleanup
Andreas Müller
05:12 PM Revision aae87424 (cdmlib): ref #9771 improvements to Cdm2CdmImportBase including a first (not ready) version for VocabularyFilter
Andreas Müller
05:08 PM Revision 1698cd08 (cdmlib-apps): ref #9771 add OntologyExportActivator
Andreas Müller
05:07 PM Revision a93bc36d (cdmlib-apps): ref #10072, ref #2934 adapt some log4j2-test.xml in app-import
Andreas Müller
05:04 PM Revision 8f398fea (cdmlib-apps): cleanup
Andreas Müller
05:03 PM Revision 74367311 (cdmlib-apps): ref #2934 some adaptations for "Moose" import in app-import
Andreas Müller
05:01 PM Revision f1305668 (cdmlib): ref #2934 some adaptations for "Moose" import in cdmlib
Andreas Müller
04:58 PM Revision 44efba5c (cdmlib): ref #10072, ref #2934 adapt some log4j2(-test).xml in cdmlib
Andreas Müller

09/18/2022

05:01 PM task #9975: Create new UML diagramms for the CDM
Diagrams are now available in edit-community (160.45.63.172) /var/www/wp5.e-taxonomy.eu/cdm-uml/2022-09-13/model&Diag... Belen Escobari

09/15/2022

12:32 PM task #7404 (Resolved): Add linux and mac to editor installation documentation
Are you aggree with closing the ticket? Katja Luther
12:20 PM task #7404 (In Progress): Add linux and mac to editor installation documentation
the mac and linux installation descriptions are added to the installation document. On cybertaxonomy.org I changed th... Katja Luther
11:37 AM bug #10054: Changes on secundum reference are lost after changing status to basionym
As described above actually I could not reproduce this anymore. Tried again with several synonym/taxon combinations. ... Katja Luther
11:18 AM bug #6228 (Resolved): Fix behavior of multi-language editing
The language combos are without the empty line now. Katja Luther
11:17 AM Revision 25c29b34 (taxeditor): ref #6228: remove empty entry in language combo in translation wizard
Katja Luther
11:13 AM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
Katja Luther
10:39 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller wrote in #note-20:
> for review?
after jenkins build I would test by myself and then for review.
Katja Luther
10:38 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
for review? Andreas Müller
10:35 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller wrote in #note-18:
> Katja Luther wrote in #note-17:
> > Andreas Müller wrote in #note-16:
> > > Th...
Katja Luther
11:11 AM bug #10160 (Resolved): Reactivate preference to open new window for every search
Katja Luther
11:10 AM bug #10160 (Closed): Reactivate preference to open new window for every search
Katja Luther
11:09 AM Revision 87718ff3 (taxeditor): reactivate open new window for every search
Katja Luther
10:34 AM Revision e1b9a0ec (taxeditor): ref #10108:the description changes should be in SpecimenMediaElement not in MediaMetaElement
Katja Luther

09/14/2022

03:36 PM bug #10158 (New): Remove "Description Element" from view labels
e.g. in details view and supplemental data view
Best we use CdmBase.getUserFriendlyTypeName() for this so we can c...
Andreas Müller
03:18 PM feature request #9840: Add the possibility to enter new server
We could also use the same technique as for the datasources (datasource view and edit dialogue). This might be mostly... Andreas Müller
02:26 PM Revision cf0b5a45 (cdm-server): set encoding for docker - continue
Katja Luther
02:00 PM Revision 7d2ec0b4 (cdm-server): set encoding for docker - continue
Katja Luther
01:24 PM bug #10157 (New): Exception in Distribution Seletiction Wizard
Exception when select and deselect all entries of a vocabulary in Distribution Selection Wizard:
~~~
last remote ...
Katja Luther
01:13 PM Revision 220f4e5f (cdmlib): remove exception when comparing terms from 2 different vocabularies
Andreas Müller
01:04 PM bug #10155: Preference for default language of shown representations
Definetly using the language selected for the terms is a better solution then using the application language. However... Andreas Müller
12:11 PM bug #10155 (New): Preference for default language of shown representations
Actually we have a preference for the default application language, which differs between German and English and a pr... Katja Luther
12:33 PM Revision f2d37acd (cdm-server): set encoding for docker - continue
Katja Luther
12:12 PM feature request #10156 (In Progress): Show field unit media in taxon image galleries
Currently, images in the image galleries are only shown if the unit is directly related to the taxon (or is a derivat... Andreas Müller
11:46 AM bug #10107 (Resolved): i18n bug when editing media not having a default language title
Katja Luther
10:33 AM bug #10107: i18n bug when editing media not having a default language title
Andreas Müller wrote in #note-13:
> Katja Luther wrote in #note-10:
> > Now it is implemented in the way that if ther...
Katja Luther
12:37 AM bug #10107: i18n bug when editing media not having a default language title
Katja Luther wrote in #note-10:
> Now it is implemented in the way that if there is no entry for the default languag...
Andreas Müller
12:31 AM bug #10107 (Feedback): i18n bug when editing media not having a default language title
Katja Luther wrote in #note-9:
> Andreas Müller wrote in #note-8:
> > Andreas Müller wrote in #note-6:
> > > ...
...
Andreas Müller
11:46 AM Revision 8372fee9 (taxeditor): ref #10107: remember the last selection in bulkeditor and set it after search
Katja Luther
10:49 AM Revision f797776c (taxeditor): ref #10107: show translation buttons not for empty multilanguage text, if no multilanguage is selected
Katja Luther
10:29 AM Revision cba558a4 (taxeditor): rename factual data view title
Katja Luther
12:16 AM bug #6228: Fix behavior of multi-language editing
Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-12:
> > Also I would expect that the translation ed...
Andreas Müller
12:13 AM bug #6228 (Feedback): Fix behavior of multi-language editing
Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-12:
> > What I do not understand is why it is possi...
Andreas Müller

09/13/2022

11:47 PM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
Katja Luther wrote in #note-17:
> Andreas Müller wrote in #note-16:
> > This works now as expected. However, as Des...
Andreas Müller
01:41 PM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller wrote in #note-16:
> This works now as expected. However, as Description was originally not a wanted ...
Katja Luther
12:54 PM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
This works now as expected. However, as Description was originally not a wanted field in this form we should make it ... Andreas Müller
12:26 PM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
this is fixed now, see #9088#note-9 Katja Luther
11:35 AM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller
11:35 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
The local language preferences are:
Application: English
Multi-Language-Support: No
Andreas Müller
11:33 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
Same as in #9088#note-7 I get an xxx_mapkey_id error when trying to edit and save the description
~~~
last remote...
Andreas Müller
10:09 PM Revision d6b29776 (taxeditor): ref #10009 remove org.hibernate.search(.spatial.impl) from MANIFEST.MF again
Andreas Müller
10:09 PM Revision 1ce1c3b7 (taxeditor): add logger
Andreas Müller
09:45 PM feature request #10154 (New): Allow specimen duplicate creation for individual associations in Facts View
WGB:
Und noch eins: Der elegante Dubletten-Erzeugungsweg ist bislang nur über Types zugänglich?
AM:
Ja, es...
Andreas Müller
05:00 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
using new cdmServer (5.33.0) and test db for some more tests. -> does not make any difference. Katja Luther
04:44 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
Setting the encoding of the docker instance does not make any change ...
Katja Luther
04:09 PM Revision 722b23fe (cdm-server): set encoding for docker
Katja Luther
03:56 PM Revision cf5f6377 (cdm-server): set encoding for docker
Katja Luther
03:03 PM bug #10153: Delete configurator for media specimen should contain the handling of the media
Default should be to delete it if it is not referenced elsewhere and keep it otherwise. Andreas Müller
09:36 AM bug #10153 (New): Delete configurator for media specimen should contain the handling of the media
The configurator should contain the handling of the media, should it be deleted, too or only removed from the mediasp... Katja Luther
02:43 PM bug #10116: Create a new name denied for users
Not working as expected (user):
User wants to use an existing name to insert a new lecto-, neo- or epitype designa...
Wolf-Henning Kusber
01:57 PM bug #10116: Create a new name denied for users
Upps, for some reason I did not receive the ticket notification and have not see that you had answered already.
Ca...
Andreas Müller
01:59 PM bug #10137: Compressed table does not show derivates anymore
This seems to be a problem of the derivedUnit or field unit DTO, because the flags hasDNA, hasImage etc are not fille... Katja Luther
01:58 PM bug #6228 (Resolved): Fix behavior of multi-language editing
Katja Luther
01:57 PM bug #6228: Fix behavior of multi-language editing
Andreas Müller wrote in #note-12:
> Most of the issues are fixed. It is now possible to add >2 languages and to remov...
Katja Luther
01:08 PM bug #6228 (Feedback): Fix behavior of multi-language editing
Most of the issues are fixed. It is now possible to add >2 languages and to remove a certain translation. This works.... Andreas Müller
01:57 PM bug #10141: Exception (CCE) caused by logging setLevel in phycobank
Can you please review? Andreas Müller
01:50 PM Revision 1ac58a9c (taxeditor): ref #6228: language drop down should not allow empty selection
Katja Luther
01:44 PM bug #10138 (Discussed): Details view is not updated after freetext change
Katja Luther wrote in #note-2:
> The issue about the nameUsedInSource seems to be a problem of the parser, at the be...
Andreas Müller
01:42 PM bug #10107 (Resolved): i18n bug when editing media not having a default language title
Katja Luther
01:39 PM bug #10107: i18n bug when editing media not having a default language title
Now it is implemented in the way that if there is no entry for the default language in "not multilanguage environment... Katja Luther
12:51 PM bug #10107: i18n bug when editing media not having a default language title
Andreas Müller wrote in #note-8:
> Andreas Müller wrote in #note-6:
> > ...
> > However, in this case it is partly...
Katja Luther
12:41 PM bug #10107: i18n bug when editing media not having a default language title
Andreas Müller wrote in #note-6:
> ...
> However, in this case it is partly possible to edit the data.
With part...
Andreas Müller
12:37 PM bug #10107: i18n bug when editing media not having a default language title
Please also cleanup code in MultilanguageTextElement if possible as you commited a couple of commented lines (still n... Andreas Müller
12:36 PM bug #10107 (Feedback): i18n bug when editing media not having a default language title
This is mostly fixed. i18n editing works. Also, if no i18n support is switched on (and English is the application lan... Andreas Müller
01:35 PM Revision bcdd6336 (taxeditor): ref #10108: description is shown only if exist and fix multilangue with missing default language entry
Katja Luther
12:43 PM bug #9088 (Closed): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
Fully fixed now. Andreas Müller
12:24 PM bug #9088 (Resolved): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
This is fixed, the problem was a method getting the default language, but if the language was not set (english is the... Katja Luther
11:24 AM bug #9088 (Feedback): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
When trying to test this I always get a ConstraintViolationException when trying to create a textual typedesignation.... Andreas Müller
12:03 PM Revision cb954fb3 (taxeditor): fix default language if no preference is set
Katja Luther
10:28 AM bug #10128 (Closed): Creating new user throws NPE for invalid user names
Code looks ok and works as expected. Andreas Müller
10:01 AM Revision 71bf8219 (taxeditor): avoid concurrentModificationExceptions
Katja Luther
 

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