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From 09/02/2022 to 10/01/2022

10/01/2022

10:36 AM Revision 95504cb1 (cdmlib): cleanup
Andreas Müller
10:35 AM Revision 942588ed (cdmlib): ref #10116 add group submitter to self-registered user if it exists
Andreas Müller
09:51 AM Revision 7cfab6d6 (cdmlib): rename package for VocabularyTreeCreator
Andreas Müller

09/30/2022

06:57 PM bug #6228 (Feedback): Fix behavior of multi-language editing
Everything works correct now except for the ride side of the translation editor
1. When opening the trans-editor t...
Andreas Müller
05:13 PM bug #10135 (Feedback): Created_by and when is missing for User and Group
Andreas Müller
05:12 PM bug #10135: Created_by and when is missing for User and Group
Final issue: there is still a relatively large gap before UUID for VersionableEntities:
![](clipboard-202209301711...
Andreas Müller
11:50 AM bug #10135 (Resolved): Created_by and when is missing for User and Group
Katja Luther
11:50 AM bug #10135: Created_by and when is missing for User and Group
Andreas Müller wrote in #note-6:
> Actually the gap does not look nice and more important it requires more scrolling...
Katja Luther
11:05 AM bug #10135 (Feedback): Created_by and when is missing for User and Group
Actually the gap does not look nice and more important it requires more scrolling when trying to read the ID and UUID... Andreas Müller
05:09 PM bug #10160 (Feedback): Reactivate preference to open new window for every search
Katja Luther wrote in #note-9:
> Andreas Müller wrote in #note-8:
> > Andreas Müller wrote in #note-6:
> > > After...
Andreas Müller
12:39 PM bug #10160 (Resolved): Reactivate preference to open new window for every search
Andreas Müller wrote in #note-8:
> Andreas Müller wrote in #note-6:
> > After activating the preference a new windo...
Katja Luther
12:28 PM bug #10160 (Feedback): Reactivate preference to open new window for every search
Andreas Müller wrote in #note-6:
> After activating the preference a new window is not opened after running the sear...
Andreas Müller
12:01 PM bug #10160 (Resolved): Reactivate preference to open new window for every search
Andreas Müller wrote in #note-6:
> After activating the preference a new window is not opened after running the sear...
Katja Luther
11:44 AM bug #10160: Reactivate preference to open new window for every search
After activating the preference a new window is not opened after running the search a second time. Andreas Müller
11:17 AM bug #10160: Reactivate preference to open new window for every search
It was on top level before we cleaned-up the preferences. I think we should put it to search. At least that was the f... Andreas Müller
11:05 AM bug #10160: Reactivate preference to open new window for every search
Andreas Müller wrote in #note-2:
> I can't find the preferences. Please leave a message where to find it.
It is i...
Katja Luther
10:56 AM bug #10160 (Feedback): Reactivate preference to open new window for every search
I can't find the preferences. Please leave a message where to find it. Andreas Müller
05:01 PM bug #10163: Fix label for "Orthography Conserved" and "Conserved Desig"
Still needs to switch to schema version 5.33 and after release check databases for possibly incorrect data. Andreas Müller
05:00 PM bug #10163 (Resolved): Fix label for "Orthography Conserved" and "Conserved Desig"
Applied in changeset commit:cdmlib|781c088070cf405452780604dc9358046e0c35e8. Andreas Müller
04:42 PM bug #10163 (Closed): Fix label for "Orthography Conserved" and "Conserved Desig"
When fixing #9311 the label update for "Conserved Desig => Conservation Designated" went wrong as the wrong term was ... Andreas Müller
05:00 PM Revision 781c0880 (cdmlib): fix #10163 fix labels for "Orthography Conserved" and "Conserved Desig"
Andreas Müller
04:00 PM Revision 9139abb2 (cdmlib): cleanup
Andreas Müller
01:54 PM task #7404 (Feedback): Add linux and mac to editor installation documentation
In chapter 1 there is still missing information which version is the recommended version for linux. Do we have any re... Andreas Müller
01:28 PM Revision f73a47f6 (cdmlib): ref #10156: call service method with parameter
Katja Luther
01:01 PM bug #10107 (Closed): i18n bug when editing media not having a default language title
Seems to work as expected, now. Andreas Müller
12:51 PM bug #10121 (Worksforme): ConstraintViolationException when editing placement notes
Could not reproduce it anymore, tested add status -> close -> ok
set note (status already existed) -> close -> ok
...
Katja Luther
12:39 PM Revision 9186d805 (taxeditor): ref #10160: fix preference setting
Katja Luther
12:28 PM Revision c14a1327 (taxeditor): ref #10108: check whether text exist in descriptions
Katja Luther
12:19 PM bug #10162: Problems when deleting names involved in a namerelationship
mail WB:
Hallo,
nach dem CDM-L Export kam folgendes:
~~~
An unexpected error occurred when handling homotypic group...
Katja Luther
10:35 AM bug #10162 (New): Problems when deleting names involved in a namerelationship
Deleting of names with namerelationship results in namerelationship pointing to a not existing name. Katja Luther
12:01 PM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
Field size is ok now.
It still shows the field in some cases though no text exists. E.g.
![](clipboard-20220930...
Andreas Müller
12:01 PM Revision 75ce29f0 (taxeditor): ref #10160: move preference to search
Katja Luther
11:57 AM Revision 84cfbeed (taxeditor): ref #10135: remove createSection again and implement it in versionable and cdmBase element -continue
Katja Luther
11:51 AM bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
I think this is not as fast as it should be to implement it in this release, so I would move it to 5.35. Katja Luther
11:49 AM Revision a3db6d8c (taxeditor): ref #10135: remove createSection again and implement it in versionable and cdmBase element
Katja Luther
11:21 AM bug #10151 (Closed): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
Andreas Müller wrote in #note-7:
> Works as expected. Please still correct the label "Create Field Unit For selected...
Katja Luther
11:11 AM bug #10151 (Feedback): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
Works as expected. Please still correct the label "Create Field Unit For selected taxon" -> "Create field unit for se... Andreas Müller
11:20 AM Revision bee75d93 (taxeditor): ref #10151: fix menu label
Katja Luther
11:14 AM bug #10137 (Resolved): Compressed table does not show derivates anymore
I adapted the collection of the derivedUnitDtos and now all informations are shown again. Please have a look. (for ex... Katja Luther

09/29/2022

02:47 PM Revision 8f4ed895 (taxeditor): minor
Katja Luther
02:35 PM bug #10135 (Resolved): Created_by and when is missing for User and Group
Andreas Müller
02:06 PM bug #10135 (Feedback): Created_by and when is missing for User and Group
Katja Luther
01:59 PM bug #10135 (Resolved): Created_by and when is missing for User and Group
Applied in changeset commit:taxeditor|967f73857a25e5d92aae0450eb1363575cf26bec.
The implementation added a new secti...
Katja Luther
02:24 PM Revision c7aa8ed8 (cdmlib): ref #10156: adapt TaxonController - continue
Katja Luther
02:08 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
I tested a fresh docker installation in my VM and with this instance it does not make any problems, so I would uninst... Katja Luther
01:59 PM Revision 5d5d125e (taxeditor): ref #10135: add created and createdby to an extra section to keep it at the same place
Katja Luther
01:44 PM Revision 967f7385 (taxeditor): fix #10135: add created and createdby to supplemental data of cdmBase
Katja Luther
01:31 PM feature request #10156 (In Progress): Show field unit media in taxon image galleries
Added a parameter to the service methods to list also the media of the originals of a specimen or observation. Katja Luther
01:30 PM bug #10151: Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
Please review. Katja Luther
01:29 PM bug #10151 (Resolved): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
This is fixed now. Katja Luther
12:30 PM bug #10151 (In Progress): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
There was an own menu item for creating new field unit associated with the selected taxon. Need to find out why it is... Katja Luther
01:29 PM Revision 46b073fe (taxeditor): ref #10151: create field unit for selected taxon
Katja Luther
11:53 AM Revision 7ff10c66 (cdm-dataportal): ref #10156: adapt portal settings to possibility to show original media
Katja Luther
11:35 AM Revision b10b63a9 (cdmlib): ref #10156: adapt TaxonController
Katja Luther
11:21 AM Revision e56ebfbd (cdmlib): ref #10156: addOriginals to taxonServive.listMedia
Katja Luther
10:34 AM Revision 6a6849d6 (cdm-dataportal): ref #10137: add all derivates
Katja Luther
10:15 AM Revision a64c3fe4 (cdm-dataportal): ref #10137: missing parathesis
Katja Luther
10:09 AM Revision 17c7ac43 (cdm-dataportal): ref #10137: missing parathesis
Katja Luther
10:05 AM Revision db17326d (cdm-dataportal): ref #10137: test whether there are an icon for detail image
Katja Luther
09:51 AM Revision e5fafd55 (cdmlib): ref #10156: add parameter for collecting original media
Katja Luther
09:27 AM Revision 85a6d568 (cdm-dataportal): ref #10137: adapt table view test
Katja Luther
08:26 AM Revision 24febf9e (cdm-dataportal): ref #10137: adapt tree view test - missed to commit the second file
Katja Luther

09/28/2022

04:47 PM Revision e8031e81 (cdm-dataportal): ref #10137: adapt tree view test- continue
Katja Luther
04:23 PM Revision 9502ca1c (cdm-dataportal): ref #10137: adapt tree view test- continue
Katja Luther
04:07 PM Revision ad4ba907 (cdm-dataportal): ref #10137: adapt tree view test- continue
Katja Luther
03:32 PM Revision 748b197a (cdm-dataportal): ref #10137: adapt tree view test
Katja Luther
02:35 PM Revision 53230fa5 (cdm-dataportal): ref #10137: adapt test - conitnue
Katja Luther
02:33 PM Revision d6d42642 (cdm-dataportal): ref #10137: adapt test - conitnue
Katja Luther
02:15 PM Revision aed6dc27 (cdm-dataportal): ref #10137: adapt test
Katja Luther
12:53 PM Revision 61259bf0 (cdmlib): ref #10137: improve derivate handling in dtos
Katja Luther

09/27/2022

03:57 PM Revision 7950c5b2 (cdmlib): ref #10137: improve derivate handling in dtos
Katja Luther
12:39 PM Revision 25160230 (cdmlib): ref #10137: only derived unit associated to the taxon should be collected in rootUnitsforAssociatedTaxon and flags should also be added to parent dto
Katja Luther
12:38 PM Revision 5478f967 (cdmlib): minor
Katja Luther
11:53 AM Revision 51e0e683 (cdmlib): minor
Katja Luther

09/26/2022

06:52 PM Revision e9494e29 (cdmlib-apps): cleanup
Andreas Müller
05:12 PM Revision 6c1a422a (cdmlib): ref #10137: only derived unit associated to the taxon should be collected in rootUnitsforAssociatedTaxon
Katja Luther
04:21 PM Revision 096b0545 (cdm-dataportal): ref #10137: webservice call should be called only once
Katja Luther
01:57 PM Revision 1ceb5b58 (cdmlib): ref #10137: give the dna, character data etc information from derivate dto to original
Katja Luther

09/23/2022

08:34 AM bug #10137: Compressed table does not show derivates anymore
By the way, more astonishing I find that for on https://portal.cybertaxonomy.org/algaterra-new/cdm_dataportal/taxon/... Andreas Müller
08:23 AM bug #10137: Compressed table does not show derivates anymore
Katja Luther wrote in #note-6:
> The compressed table also shows wrong data:
> B 40 0042054 is shown as derivate wi...
Andreas Müller

09/22/2022

01:59 PM bug #10137: Compressed table does not show derivates anymore
The compressed table also shows wrong data:
B 40 0042054 is shown as derivate with determination Gomphonema truncatum...
Katja Luther

09/21/2022

01:05 AM feature request #10161 (Closed): Deduplicate nom. status in publication if there are >1 entries with same status
... this happens if there are >1 sources for the same status of the same name.
For now we may implement it as dedu...
Andreas Müller

09/20/2022

05:17 PM Revision ad52f6a0 (cdmlib): cleanup
Andreas Müller
05:12 PM Revision aae87424 (cdmlib): ref #9771 improvements to Cdm2CdmImportBase including a first (not ready) version for VocabularyFilter
Andreas Müller
05:08 PM Revision 1698cd08 (cdmlib-apps): ref #9771 add OntologyExportActivator
Andreas Müller
05:07 PM Revision a93bc36d (cdmlib-apps): ref #10072, ref #2934 adapt some log4j2-test.xml in app-import
Andreas Müller
05:04 PM Revision 8f398fea (cdmlib-apps): cleanup
Andreas Müller
05:03 PM Revision 74367311 (cdmlib-apps): ref #2934 some adaptations for "Moose" import in app-import
Andreas Müller
05:01 PM Revision f1305668 (cdmlib): ref #2934 some adaptations for "Moose" import in cdmlib
Andreas Müller
04:58 PM Revision 44efba5c (cdmlib): ref #10072, ref #2934 adapt some log4j2(-test).xml in cdmlib
Andreas Müller

09/18/2022

05:01 PM task #9975: Create new UML diagramms for the CDM
Diagrams are now available in edit-community (160.45.63.172) /var/www/wp5.e-taxonomy.eu/cdm-uml/2022-09-13/model&Diag... Belen Escobari

09/15/2022

12:32 PM task #7404 (Resolved): Add linux and mac to editor installation documentation
Are you aggree with closing the ticket? Katja Luther
12:20 PM task #7404 (In Progress): Add linux and mac to editor installation documentation
the mac and linux installation descriptions are added to the installation document. On cybertaxonomy.org I changed th... Katja Luther
11:37 AM bug #10054: Changes on secundum reference are lost after changing status to basionym
As described above actually I could not reproduce this anymore. Tried again with several synonym/taxon combinations. ... Katja Luther
11:18 AM bug #6228 (Resolved): Fix behavior of multi-language editing
The language combos are without the empty line now. Katja Luther
11:17 AM Revision 25c29b34 (taxeditor): ref #6228: remove empty entry in language combo in translation wizard
Katja Luther
11:13 AM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
Katja Luther
10:39 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller wrote in #note-20:
> for review?
after jenkins build I would test by myself and then for review.
Katja Luther
10:38 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
for review? Andreas Müller
10:35 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller wrote in #note-18:
> Katja Luther wrote in #note-17:
> > Andreas Müller wrote in #note-16:
> > > Th...
Katja Luther
11:11 AM bug #10160 (Resolved): Reactivate preference to open new window for every search
Katja Luther
11:10 AM bug #10160 (Closed): Reactivate preference to open new window for every search
Katja Luther
11:09 AM Revision 87718ff3 (taxeditor): reactivate open new window for every search
Katja Luther
10:34 AM Revision e1b9a0ec (taxeditor): ref #10108:the description changes should be in SpecimenMediaElement not in MediaMetaElement
Katja Luther

09/14/2022

03:36 PM bug #10158 (New): Remove "Description Element" from view labels
e.g. in details view and supplemental data view
Best we use CdmBase.getUserFriendlyTypeName() for this so we can c...
Andreas Müller
03:18 PM feature request #9840: Add the possibility to enter new server
We could also use the same technique as for the datasources (datasource view and edit dialogue). This might be mostly... Andreas Müller
02:26 PM Revision cf0b5a45 (cdm-server): set encoding for docker - continue
Katja Luther
02:00 PM Revision 7d2ec0b4 (cdm-server): set encoding for docker - continue
Katja Luther
01:24 PM bug #10157 (New): Exception in Distribution Seletiction Wizard
Exception when select and deselect all entries of a vocabulary in Distribution Selection Wizard:
~~~
last remote ...
Katja Luther
01:13 PM Revision 220f4e5f (cdmlib): remove exception when comparing terms from 2 different vocabularies
Andreas Müller
01:04 PM bug #10155: Preference for default language of shown representations
Definetly using the language selected for the terms is a better solution then using the application language. However... Andreas Müller
12:11 PM bug #10155 (New): Preference for default language of shown representations
Actually we have a preference for the default application language, which differs between german and english and a pr... Katja Luther
12:33 PM Revision f2d37acd (cdm-server): set encoding for docker - continue
Katja Luther
12:12 PM feature request #10156 (In Progress): Show field unit media in taxon image galleries
Currently, images in the image galleries are only shown if the unit is directly related to the taxon (or is a derivat... Andreas Müller
11:46 AM bug #10107 (Resolved): i18n bug when editing media not having a default language title
Katja Luther
10:33 AM bug #10107: i18n bug when editing media not having a default language title
Andreas Müller wrote in #note-13:
> Katja Luther wrote in #note-10:
> > Now it is implemented in the way that if ther...
Katja Luther
12:37 AM bug #10107: i18n bug when editing media not having a default language title
Katja Luther wrote in #note-10:
> Now it is implemented in the way that if there is no entry for the default languag...
Andreas Müller
12:31 AM bug #10107 (Feedback): i18n bug when editing media not having a default language title
Katja Luther wrote in #note-9:
> Andreas Müller wrote in #note-8:
> > Andreas Müller wrote in #note-6:
> > > ...
...
Andreas Müller
11:46 AM Revision 8372fee9 (taxeditor): ref #10107: remember the last selection in bulkeditor and set it after search
Katja Luther
10:49 AM Revision f797776c (taxeditor): ref #10107: show translation buttons not for empty multilanguage text, if no multilanguage is selected
Katja Luther
10:29 AM Revision cba558a4 (taxeditor): rename factual data view title
Katja Luther
12:16 AM bug #6228: Fix behavior of multi-language editing
Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-12:
> > Also I would expect that the translation ed...
Andreas Müller
12:13 AM bug #6228 (Feedback): Fix behavior of multi-language editing
Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-12:
> > What I do not understand is why it is possi...
Andreas Müller

09/13/2022

11:47 PM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
Katja Luther wrote in #note-17:
> Andreas Müller wrote in #note-16:
> > This works now as expected. However, as Des...
Andreas Müller
01:41 PM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller wrote in #note-16:
> This works now as expected. However, as Description was originally not a wanted ...
Katja Luther
12:54 PM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
This works now as expected. However, as Description was originally not a wanted field in this form we should make it ... Andreas Müller
12:26 PM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
this is fixed now, see #9088#note-9 Katja Luther
11:35 AM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller
11:35 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
The local language preferences are:
Application: English
Multi-Language-Support: No
Andreas Müller
11:33 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
Same as in #9088#note-7 I get an xxx_mapkey_id error when trying to edit and save the description
~~~
last remote...
Andreas Müller
10:09 PM Revision d6b29776 (taxeditor): ref #10009 remove org.hibernate.search(.spatial.impl) from MANIFEST.MF again
Andreas Müller
10:09 PM Revision 1ce1c3b7 (taxeditor): add logger
Andreas Müller
09:45 PM feature request #10154 (New): Allow specimen duplicate creation for individual associations in Facts View
WGB:
Und noch eins: Der elegante Dubletten-Erzeugungsweg ist bislang nur über Types zugänglich?
AM:
Ja, es...
Andreas Müller
05:00 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
using new cdmServer (5.33.0) and test db for some more tests. -> does not make any difference. Katja Luther
04:44 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
Setting the encoding of the docker instance does not make any change ...
Katja Luther
04:09 PM Revision 722b23fe (cdm-server): set encoding for docker
Katja Luther
03:56 PM Revision cf5f6377 (cdm-server): set encoding for docker
Katja Luther
03:03 PM bug #10153: Delete configurator for media specimen should contain the handling of the media
Default should be to delete it if it is not referenced elsewhere and keep it otherwise. Andreas Müller
09:36 AM bug #10153 (New): Delete configurator for media specimen should contain the handling of the media
The configurator should contain the handling of the media, should it be deleted, too or only removed from the mediasp... Katja Luther
02:43 PM bug #10116: Create a new name denied for users
Not working as expected (user):
User wants to use an existing name to insert a new lecto-, neo- or epitype designa...
Wolf-Henning Kusber
01:57 PM bug #10116: Create a new name denied for users
Upps, for some reason I did not receive the ticket notification and have not see that you had answered already.
Ca...
Andreas Müller
01:59 PM bug #10137: Compressed table does not show derivates anymore
This seems to be a problem of the derivedUnit or field unit DTO, because the flags hasDNA, hasImage etc are not fille... Katja Luther
01:58 PM bug #6228 (Resolved): Fix behavior of multi-language editing
Katja Luther
01:57 PM bug #6228: Fix behavior of multi-language editing
Andreas Müller wrote in #note-12:
> Most of the issues are fixed. It is now possible to add >2 languages and to remov...
Katja Luther
01:08 PM bug #6228 (Feedback): Fix behavior of multi-language editing
Most of the issues are fixed. It is now possible to add >2 languages and to remove a certain translation. This works.... Andreas Müller
01:57 PM bug #10141: Exception (CCE) caused by logging setLevel in phycobank
Can you please review? Andreas Müller
01:50 PM Revision 1ac58a9c (taxeditor): ref #6228: language drop down should not allow empty selection
Katja Luther
01:44 PM bug #10138 (Discussed): Details view is not updated after freetext change
Katja Luther wrote in #note-2:
> The issue about the nameUsedInSource seems to be a problem of the parser, at the be...
Andreas Müller
01:42 PM bug #10107 (Resolved): i18n bug when editing media not having a default language title
Katja Luther
01:39 PM bug #10107: i18n bug when editing media not having a default language title
Now it is implemented in the way that if there is no entry for the default language in "not multilanguage environment... Katja Luther
12:51 PM bug #10107: i18n bug when editing media not having a default language title
Andreas Müller wrote in #note-8:
> Andreas Müller wrote in #note-6:
> > ...
> > However, in this case it is partly...
Katja Luther
12:41 PM bug #10107: i18n bug when editing media not having a default language title
Andreas Müller wrote in #note-6:
> ...
> However, in this case it is partly possible to edit the data.
With part...
Andreas Müller
12:37 PM bug #10107: i18n bug when editing media not having a default language title
Please also cleanup code in MultilanguageTextElement if possible as you commited a couple of commented lines (still n... Andreas Müller
12:36 PM bug #10107 (Feedback): i18n bug when editing media not having a default language title
This is mostly fixed. i18n editing works. Also, if no i18n support is switched on (and English is the application lan... Andreas Müller
01:35 PM Revision bcdd6336 (taxeditor): ref #10108: description is shown only if exist and fix multilangue with missing default language entry
Katja Luther
12:43 PM bug #9088 (Closed): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
Fully fixed now. Andreas Müller
12:24 PM bug #9088 (Resolved): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
This is fixed, the problem was a method getting the default language, but if the language was not set (english is the... Katja Luther
11:24 AM bug #9088 (Feedback): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
When trying to test this I always get a ConstraintViolationException when trying to create a textual typedesignation.... Andreas Müller
12:03 PM Revision cb954fb3 (taxeditor): fix default language if no preference is set
Katja Luther
10:28 AM bug #10128 (Closed): Creating new user throws NPE for invalid user names
Code looks ok and works as expected. Andreas Müller
10:01 AM Revision 71bf8219 (taxeditor): avoid concurrentModificationExceptions
Katja Luther

09/12/2022

03:39 PM Revision e7788ae7 (taxeditor): set test to ignore to get a new build of the editor
Katja Luther
03:36 PM Revision 4baedbfd (taxeditor): ref #10080: avoid multiple call of setEntity()
Katja Luther
02:59 PM feature request #10152 (New): Show red warning also for fieldUnits in xxxUnitFacade if a fieldUnit is edited but used >1 times
WGB:
eine Nachfrage dazu: Wenn ich aus dem Factual Data View (und dem verbundenen Details View) eines Specimens ge...
Andreas Müller
02:55 PM bug #6228: Fix behavior of multi-language editing
please review Katja Luther
02:54 PM Revision dfb21565 (taxeditor): ref #6228: remove representation should make the editor dirty
Katja Luther
01:58 PM bug #10151 (Closed): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
AM:
"... Taxon Navigator –> Open in ... –> Specimen Editor (tree) ... Ich habe das gerade mal ausprobiert und es s...
Andreas Müller
01:58 PM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
please have a look and review. Katja Luther
01:57 PM bug #5823 (Worksforme): Fehler beim parallel Editieren von Referenzen
Tried to search with taxon search, open a taxon out of the search and editing different elements, everything works fi... Katja Luther
01:53 PM bug #9088 (Resolved): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
Checked for all NameParts (Typedesignations, NomenclaturalSource, NameRelationships...)
Checked for all TaxonParts (...
Katja Luther
01:37 PM bug #10128: Creating new user throws NPE for invalid user names
Andreas Müller wrote in #note-6:
> Is there a reason why you created your own regex and did not reuse the one in eu....
Katja Luther
01:35 PM bug #10128 (Resolved): Creating new user throws NPE for invalid user names
Applied in changeset commit:taxeditor|7c4523a1047d25f240548854fd8d29c39d395b77. Katja Luther
01:29 PM Revision 7c4523a1 (taxeditor): fix #10128: use User.USERNAME_REGEX
Katja Luther

09/10/2022

12:14 PM Revision 98b61724 (cdmlib): ref #10072 move and rename log4j.xml for cdmlib test
Andreas Müller

09/09/2022

01:27 PM Revision 51b18e9b (server-scripts): remove windows carriage return
Katja Luther
12:57 PM Revision c1bbef12 (cdm-dataportal): test
Katja Luther
11:13 AM Revision 65385ba5 (taxeditor): ref #10072 rename log4j2.xml to log4j2-test.xml in taxeditor test
Andreas Müller
11:06 AM Revision 66269ea4 (cdm-vaadin): ref #10072 rename log4j2.xml to log4j2-test.xml in vaadin test
Andreas Müller
10:49 AM Revision 03fcde85 (cdmlib): ref #10072 fix LogUtilsTest after correct use of log4j2.xml
Andreas Müller
10:43 AM Revision 5594277f (cdm-dataportal): test
Katja Luther
10:24 AM bug #10150 (New): Sync button does not work if classification is collapsed
If the classication is closed in navigator the sync button does not work, you have to open at least the first node. Katja Luther
10:22 AM bug #10149 (New): CCE when add MAN
beim Erzeugen einer MAN oder auch pp-Syn in einem schon länger offenen Taxon Editor habe ich den Fehler unten bekomme... Katja Luther

09/08/2022

10:04 PM Revision a59bdc4b (cdmlib-apps): ref #10072 rename log4j.xml to log4j2.xml in app-imports
Andreas Müller
10:00 PM Revision 432cf8da (cdm-dataportal): ref #10072 rename log4j.xml to log4j2.xml in dataportal
Andreas Müller
10:00 PM Revision d9721bcf (cdm-vaadin): ref #10072 rename log4j.xml to log4j2.xml in vaadin
Andreas Müller
09:59 PM Revision d5920333 (cdmlib): ref #10072 rename log4j.xml to log4j2.xml in cdmlib
Andreas Müller
09:38 PM Revision 6d81f886 (taxeditor): ref #10072 remove log4j.xml in taxeditor
Andreas Müller
09:13 PM bug #10118 (Closed): Availability of partial misapplied should be configurable
Seems to work as expected. Andreas Müller
08:53 PM task #8047 (Closed): Remaining issues in TaxDistributionEditor
I close this ticket. All open issues were moved to #8889 as far as I can see. Andreas Müller
08:31 PM task #8047: Remaining issues in TaxDistributionEditor
Katja Luther wrote in #note-64:
> Andreas Müller wrote:
> > >Try to optimize the column width at start or after are...
Andreas Müller
06:48 PM bug #10148 (New): Area selection for distribution editor is not intuitive for non-filtered areas
WGB:
Wenn man den Distribution Select Wizard öffnet, dann werden alle Areas, auch die angezeigten, als nicht selec...
Andreas Müller
06:29 PM bug #10147 (New): Context menu for columns does not work in distribution editor
.. to hide/show columns. It works in matrix editor. Andreas Müller
06:25 PM feature request #10146 (New): Allow disable Synonyms column in distribution editor (TaxEditor)
... currently it is only possible to disable the rank column via preferences Andreas Müller
01:54 PM bug #10142 (Closed): ReferenceType drop down is not ordered
Works as expected Andreas Müller
08:49 AM bug #10142 (Resolved): ReferenceType drop down is not ordered
This should be resolved, please review. Katja Luther
08:48 AM bug #10142 (Closed): ReferenceType drop down is not ordered
The referencetype drop down for new references in Reference Bulkeditor is not ordered, but should be ordered alphabet... Katja Luther
01:35 PM feature request #10145 (New): Transform accessed field in Reference from DateTime to TimePeriod
Similar to OriginalSource.accessed.
Requires update script, adaptions in TaxEditor and formatter.
For some deta...
Andreas Müller
01:32 PM feature request #9915 (Closed): Make "accessed" also available for references of type "database"
This seems to be fixed with #10057 and the new IDynamicReference introduced there.
Please reopen if you think some...
Andreas Müller
01:17 PM bug #10144 (Closed): Cancel for Specimen-Search does not work
Works as expected. Andreas Müller
10:52 AM bug #10144 (Resolved): Cancel for Specimen-Search does not work
Is fixed, please review. Katja Luther
10:38 AM bug #10144 (Closed): Cancel for Specimen-Search does not work
.. in specimen tree editor.
When I do a search with a large result I get a warning that the result will be large (...
Andreas Müller
12:58 PM bug #10116: Create a new name denied for users
REference: Kusber, W.-H.: TestuserTitle revised. – Phytotaxa 12345: 12345
Task: create a new specimen type for a d...
Wolf-Henning Kusber
12:23 PM bug #10116: Create a new name denied for users
Used Testsystem and testuserwhk,
Successful tested:
Create new reference, edit new reference
Create new species, s...
Wolf-Henning Kusber
12:24 PM task #10124 (In Progress): Adapt deprecated hibernate methods to suggested new methods
Katja Luther
12:09 PM bug #10137 (In Progress): Compressed table does not show derivates anymore
Andreas Müller
12:03 PM task #2035: [MANUAL] Update Editor documentation to current version
Unfortunately we do not have time now. So I move to after performance sprint milestone. Andreas Müller
12:00 PM bug #6228 (Resolved): Fix behavior of multi-language editing
Andreas Müller
11:54 AM bug #10045 (New): Open issues when updating portal translations
Andreas Müller
11:44 AM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller
11:41 AM bug #10114 (Feedback): Problem with parser for author string with whitespace between initials
Andreas Müller
11:30 AM bug #10138 (Feedback): Details view is not updated after freetext change
Andreas Müller
10:52 AM Revision 1d603a0f (taxeditor): ref #10144: fix cancel
Katja Luther
09:16 AM bug #10134: Changing from Synonym to MAN needs save, the other way round, save is not necessary
I guess this fits not so well into the performance milestone therefore I put it to the next. Andreas Müller
08:53 AM bug #10143 (New): After changing from a dynamic reference to another referenceType the accessed field is not removed

The accessed field is not of type ICdmFormElement and therefore not removed when the referenceType changes. This cl...
Katja Luther

09/07/2022

11:26 PM bug #10138: Details view is not updated after freetext change
Maybe related to #10111 Andreas Müller
11:05 AM bug #10138 (In Progress): Details view is not updated after freetext change
The issue about the nameUsedInSource seems to be a problem of the parser, at the beginning of the parsing all element... Katja Luther
10:12 AM bug #10138 (Closed): Details view is not updated after freetext change
... which may lead to data loss.
WGB:
Fl. Cuba; ich habe eben 2 Synonyme eingegeben, und zwar folgendermaßen:
...
Katja Luther
11:22 PM bug #10139 (Closed): Existing name cannot be safed to be available for typification under a different reference in PhycoBank
Andreas Müller
09:05 PM bug #10139: Existing name cannot be safed to be available for typification under a different reference in PhycoBank
Tested in the test system.
Working set exactly reproduced.
selected name saved and available for type-input.
Ty...
Wolf-Henning Kusber
08:14 PM bug #10139 (Resolved): Existing name cannot be safed to be available for typification under a different reference in PhycoBank
Applied in changeset commit:cdmlib|5d739ccc2a2c943051afe05caa6142f2c9b7229a. Andreas Müller
08:13 PM bug #10139: Existing name cannot be safed to be available for typification under a different reference in PhycoBank
```
com.vaadin.data.fieldgroup.FieldGroup$CommitException: Commit failed
at com.vaadin.data.fieldgroup.F...
Andreas Müller
01:36 PM bug #10139 (Closed): Existing name cannot be safed to be available for typification under a different reference in PhycoBank
Vaadin (07 Sep 2022):
Routine procedure:
Add a new registration for ….. an exsisting name
Select: Synedra longis...
Wolf-Henning Kusber
11:18 PM bug #10128: Creating new user throws NPE for invalid user names
?? Andreas Müller
11:16 PM bug #10115 (Duplicate): Create new reference denied for users
This is probably a duplicate for #10116. Andreas Müller
11:15 PM bug #10116 (Feedback): Create a new name denied for users
Can you please check in phycobank on test if user "testuserWHK" still has these problems? I added the user manually t... Andreas Müller
11:05 PM Revision 5fc5a35f (cdm-vaadin): ref #10104, ref 10067 update GrantedAuthorityRevokingRegistrationUpdateLister to new hibernate FlushMode
Andreas Müller
10:54 PM Revision d5c57711 (cdm-vaadin): ref #10104, ref 10067 update GrantedAuthorityRevokingRegistrationUpdateLister to new hibernate version (FlushMode still not adapted)
Andreas Müller
10:53 PM Revision 3cfeef69 (cdm-vaadin): cleanup
Andreas Müller
10:02 PM bug #10141 (Resolved): Exception (CCE) caused by logging setLevel in phycobank
This should be fixed, please review. Andreas Müller
09:21 PM bug #10141 (Closed): Exception (CCE) caused by logging setLevel in phycobank
WHK:
Jiang et al.. 2001: A new species of Tragelomonas angelegt.
Art angelegt “Trachelomonas subplanctonica”
In-...
Andreas Müller
10:01 PM Revision cace1fee (cdm-dataportal): cleanup
Andreas Müller
10:01 PM Revision 1f8b10fc (cdm-dataportal): ref #10141 remove setLevel in phycobank-dataportal
Andreas Müller
09:59 PM Revision 572994ea (cdm-vaadin): ref #10141 remove setLevel in phycobank-vaadin
Andreas Müller
09:57 PM Revision 421d5cb4 (cdmlib): cleanup
Andreas Müller
09:56 PM Revision 1ead145c (cdmlib): ref #10141 fix CCE in LogUtils.setLevel()
Andreas Müller
09:11 PM bug #10140 (New): Registration page shortly shows map even if no data exists
AM:
wenn ich z.B. https://www.phycobank.org/cdm_dataportal/registration?identifier=http%3A//phycobank.org/103148 ...
Andreas Müller
09:07 PM bug #9088 (Feedback): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
What exactly needs to be done for the remaining check. Can this be done fast or should we create a new ticket?
Would...
Andreas Müller
08:14 PM Revision 5d739ccc (cdmlib): fix #10139 try to fix NPE in RegistrationDTO.typeDesignationSetKeyToTypedEntity()
Andreas Müller
04:29 PM Revision ea5bc1d6 (taxeditor): sort labels for new reference menu
Katja Luther

09/06/2022

03:29 PM bug #10137: Compressed table does not show derivates anymore
The derivates column should contain icons for scans, DNA data or character data
see code :
~~~
ar...
Katja Luther
02:09 PM bug #10137: Compressed table does not show derivates anymore
At the first view it seems that the dto is not filled correctly. Katja Luther
12:49 PM bug #10137: Compressed table does not show derivates anymore
Please also check if type information is still available (I did not check) Andreas Müller
12:49 PM bug #10137 (Closed): Compressed table does not show derivates anymore
e.g. Campanula polyclada (https://campanula.e-taxonomy.net/cdm_dataportal/taxon/2e3aa801-7307-409c-bd39-d825f5f1e031/... Andreas Müller

09/05/2022

10:21 AM Revision e7915b65 (cdm-dataportal): remove target directory
Katja Luther
09:51 AM bug #8591: Multiple representations problem on setting synonym as basionym
Hallo,
Fl. Cuba, Synonymie von Adenophyllum prophyllum.
Ich hatte ein Synonym (Tagetes cancellatus) hinzugefügt und...
Katja Luther

09/03/2022

11:10 AM bug #5823 (Feedback): Fehler beim parallel Editieren von Referenzen
This is a very old multiple-representations-problem ticket. Is there a reason why we think that it is still open or c... Andreas Müller
11:05 AM bug #8510: Non unique object exception when creating FeatureStates
Andreas Müller wrote in #note-4:
> We should check if this is still an open issue and/or if it is related to any oth...
Andreas Müller

09/02/2022

10:56 AM feature request #9771: Implement Cdm2Cdm for vocabularies
A Problem are users used in Person or User
![](clipboard-202209021056-oohjh.png)
Andreas Müller
10:53 AM bug #10135: Created_by and when is missing for User and Group
If this is not (very) fast to implement please remove tag and move to other milestone. It is not a critical issue. Andreas Müller
10:52 AM bug #10135 (Closed): Created_by and when is missing for User and Group
E.g.
![](clipboard-202209021052-s0nch.png)
Andreas Müller
 

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