Activity
From 08/15/2022 to 09/13/2022
09/13/2022
- 11:47 PM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
- Katja Luther wrote in #note-17:
> Andreas Müller wrote in #note-16:
> > This works now as expected. However, as Des... - 01:41 PM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
- Andreas Müller wrote in #note-16:
> This works now as expected. However, as Description was originally not a wanted ... - 12:54 PM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
- This works now as expected. However, as Description was originally not a wanted field in this form we should make it ...
- 12:26 PM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
- this is fixed now, see #9088#note-9
- 11:35 AM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
- 11:35 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
- The local language preferences are:
Application: English
Multi-Language-Support: No
- 11:33 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
- Same as in #9088#note-7 I get an xxx_mapkey_id error when trying to edit and save the description
~~~
last remote... - 10:09 PM Revision d6b29776 (taxeditor): ref #10009 remove org.hibernate.search(.spatial.impl) from MANIFEST.MF again
- 10:09 PM Revision 1ce1c3b7 (taxeditor): add logger
- 09:45 PM feature request #10154 (New): Allow specimen duplicate creation for individual associations in Facts View
- WGB:
Und noch eins: Der elegante Dubletten-Erzeugungsweg ist bislang nur über Types zugänglich?
AM:
Ja, es... - 05:00 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
- using new cdmServer (5.33.0) and test db for some more tests. -> does not make any difference.
- 04:44 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
- Setting the encoding of the docker instance does not make any change ...
- 04:09 PM Revision 722b23fe (cdm-server): set encoding for docker
- 03:56 PM Revision cf5f6377 (cdm-server): set encoding for docker
- 03:03 PM bug #10153: Delete configurator for media specimen should contain the handling of the media
- Default should be to delete it if it is not referenced elsewhere and keep it otherwise.
- 09:36 AM bug #10153 (New): Delete configurator for media specimen should contain the handling of the media
- The configurator should contain the handling of the media, should it be deleted, too or only removed from the mediasp...
- 02:43 PM bug #10116: Create a new name denied for users
- Not working as expected (user):
User wants to use an existing name to insert a new lecto-, neo- or epitype designa... - 01:57 PM bug #10116: Create a new name denied for users
- Upps, for some reason I did not receive the ticket notification and have not see that you had answered already.
Ca... - 01:59 PM bug #10137: Compressed table does not show derivates anymore
- This seems to be a problem of the derivedUnit or field unit DTO, because the flags hasDNA, hasImage etc are not fille...
- 01:58 PM bug #6228 (Resolved): Fix behavior of multi-language editing
- 01:57 PM bug #6228: Fix behavior of multi-language editing
- Andreas Müller wrote in #note-12:
> Most of the issues are fixed. It is now possible to add >2 languages and to remov... - 01:08 PM bug #6228 (Feedback): Fix behavior of multi-language editing
- Most of the issues are fixed. It is now possible to add >2 languages and to remove a certain translation. This works....
- 01:57 PM bug #10141: Exception (CCE) caused by logging setLevel in phycobank
- Can you please review?
- 01:50 PM Revision 1ac58a9c (taxeditor): ref #6228: language drop down should not allow empty selection
- 01:44 PM bug #10138 (Discussed): Details view is not updated after freetext change
- Katja Luther wrote in #note-2:
> The issue about the nameUsedInSource seems to be a problem of the parser, at the be... - 01:42 PM bug #10107 (Resolved): i18n bug when editing media not having a default language title
- 01:39 PM bug #10107: i18n bug when editing media not having a default language title
- Now it is implemented in the way that if there is no entry for the default language in "not multilanguage environment...
- 12:51 PM bug #10107: i18n bug when editing media not having a default language title
- Andreas Müller wrote in #note-8:
> Andreas Müller wrote in #note-6:
> > ...
> > However, in this case it is partly... - 12:41 PM bug #10107: i18n bug when editing media not having a default language title
- Andreas Müller wrote in #note-6:
> ...
> However, in this case it is partly possible to edit the data.
With part... - 12:37 PM bug #10107: i18n bug when editing media not having a default language title
- Please also cleanup code in MultilanguageTextElement if possible as you commited a couple of commented lines (still n...
- 12:36 PM bug #10107 (Feedback): i18n bug when editing media not having a default language title
- This is mostly fixed. i18n editing works. Also, if no i18n support is switched on (and English is the application lan...
- 01:35 PM Revision bcdd6336 (taxeditor): ref #10108: description is shown only if exist and fix multilangue with missing default language entry
- 12:43 PM bug #9088 (Closed): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
- Fully fixed now.
- 12:24 PM bug #9088 (Resolved): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
- This is fixed, the problem was a method getting the default language, but if the language was not set (english is the...
- 11:24 AM bug #9088 (Feedback): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
- When trying to test this I always get a ConstraintViolationException when trying to create a textual typedesignation....
- 12:03 PM Revision cb954fb3 (taxeditor): fix default language if no preference is set
- 10:28 AM bug #10128 (Closed): Creating new user throws NPE for invalid user names
- Code looks ok and works as expected.
- 10:01 AM Revision 71bf8219 (taxeditor): avoid concurrentModificationExceptions
09/12/2022
- 03:39 PM Revision e7788ae7 (taxeditor): set test to ignore to get a new build of the editor
- 03:36 PM Revision 4baedbfd (taxeditor): ref #10080: avoid multiple call of setEntity()
- 02:59 PM feature request #10152 (New): Show red warning also for fieldUnits in xxxUnitFacade if a fieldUnit is edited but used >1 times
- WGB:
eine Nachfrage dazu: Wenn ich aus dem Factual Data View (und dem verbundenen Details View) eines Specimens ge... - 02:55 PM bug #6228: Fix behavior of multi-language editing
- please review
- 02:54 PM Revision dfb21565 (taxeditor): ref #6228: remove representation should make the editor dirty
- 01:58 PM bug #10151 (Closed): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
- AM:
"... Taxon Navigator –> Open in ... –> Specimen Editor (tree) ... Ich habe das gerade mal ausprobiert und es s... - 01:58 PM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
- please have a look and review.
- 01:57 PM bug #5823 (Worksforme): Fehler beim parallel Editieren von Referenzen
- Tried to search with taxon search, open a taxon out of the search and editing different elements, everything works fi...
- 01:53 PM bug #9088 (Resolved): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
- Checked for all NameParts (Typedesignations, NomenclaturalSource, NameRelationships...)
Checked for all TaxonParts (... - 01:37 PM bug #10128: Creating new user throws NPE for invalid user names
- Andreas Müller wrote in #note-6:
> Is there a reason why you created your own regex and did not reuse the one in eu.... - 01:35 PM bug #10128 (Resolved): Creating new user throws NPE for invalid user names
- Applied in changeset commit:taxeditor|7c4523a1047d25f240548854fd8d29c39d395b77.
- 01:29 PM Revision 7c4523a1 (taxeditor): fix #10128: use User.USERNAME_REGEX
09/10/2022
09/09/2022
- 01:27 PM Revision 51b18e9b (server-scripts): remove windows carriage return
- 12:57 PM Revision c1bbef12 (cdm-dataportal): test
- 11:13 AM Revision 65385ba5 (taxeditor): ref #10072 rename log4j2.xml to log4j2-test.xml in taxeditor test
- 11:06 AM Revision 66269ea4 (cdm-vaadin): ref #10072 rename log4j2.xml to log4j2-test.xml in vaadin test
- 10:49 AM Revision 03fcde85 (cdmlib): ref #10072 fix LogUtilsTest after correct use of log4j2.xml
- 10:43 AM Revision 5594277f (cdm-dataportal): test
- 10:24 AM bug #10150 (New): Sync button does not work if classification is collapsed
- If the classication is closed in navigator the sync button does not work, you have to open at least the first node.
- 10:22 AM bug #10149 (New): CCE when add MAN
- beim Erzeugen einer MAN oder auch pp-Syn in einem schon länger offenen Taxon Editor habe ich den Fehler unten bekomme...
09/08/2022
- 10:04 PM Revision a59bdc4b (cdmlib-apps): ref #10072 rename log4j.xml to log4j2.xml in app-imports
- 10:00 PM Revision 432cf8da (cdm-dataportal): ref #10072 rename log4j.xml to log4j2.xml in dataportal
- 10:00 PM Revision d9721bcf (cdm-vaadin): ref #10072 rename log4j.xml to log4j2.xml in vaadin
- 09:59 PM Revision d5920333 (cdmlib): ref #10072 rename log4j.xml to log4j2.xml in cdmlib
- 09:38 PM Revision 6d81f886 (taxeditor): ref #10072 remove log4j.xml in taxeditor
- 09:13 PM bug #10118 (Closed): Availability of partial misapplied should be configurable
- Seems to work as expected.
- 08:53 PM task #8047 (Closed): Remaining issues in TaxDistributionEditor
- I close this ticket. All open issues were moved to #8889 as far as I can see.
- 08:31 PM task #8047: Remaining issues in TaxDistributionEditor
- Katja Luther wrote in #note-64:
> Andreas Müller wrote:
> > >Try to optimize the column width at start or after are... - 06:48 PM bug #10148 (New): Area selection for distribution editor is not intuitive for non-filtered areas
- WGB:
Wenn man den Distribution Select Wizard öffnet, dann werden alle Areas, auch die angezeigten, als nicht selec... - 06:29 PM bug #10147 (New): Context menu for columns does not work in distribution editor
- .. to hide/show columns. It works in matrix editor.
- 06:25 PM feature request #10146 (New): Allow disable Synonyms column in distribution editor (TaxEditor)
- ... currently it is only possible to disable the rank column via preferences
- 01:54 PM bug #10142 (Closed): ReferenceType drop down is not ordered
- Works as expected
- 08:49 AM bug #10142 (Resolved): ReferenceType drop down is not ordered
- This should be resolved, please review.
- 08:48 AM bug #10142 (Closed): ReferenceType drop down is not ordered
- The referencetype drop down for new references in Reference Bulkeditor is not ordered, but should be ordered alphabet...
- 01:35 PM feature request #10145 (New): Transform accessed field in Reference from DateTime to TimePeriod
- Similar to OriginalSource.accessed.
Requires update script, adaptions in TaxEditor and formatter.
For some deta... - 01:32 PM feature request #9915 (Closed): Make "accessed" also available for references of type "database"
- This seems to be fixed with #10057 and the new IDynamicReference introduced there.
Please reopen if you think some... - 01:17 PM bug #10144 (Closed): Cancel for Specimen-Search does not work
- Works as expected.
- 10:52 AM bug #10144 (Resolved): Cancel for Specimen-Search does not work
- Is fixed, please review.
- 10:38 AM bug #10144 (Closed): Cancel for Specimen-Search does not work
- .. in specimen tree editor.
When I do a search with a large result I get a warning that the result will be large (... - 12:58 PM bug #10116: Create a new name denied for users
- REference: Kusber, W.-H.: TestuserTitle revised. – Phytotaxa 12345: 12345
Task: create a new specimen type for a d... - 12:23 PM bug #10116: Create a new name denied for users
- Used Testsystem and testuserwhk,
Successful tested:
Create new reference, edit new reference
Create new species, s... - 12:24 PM task #10124 (In Progress): Adapt deprecated hibernate methods to suggested new methods
- 12:09 PM bug #10137 (In Progress): Compressed table does not show derivates anymore
- 12:03 PM task #2035: [MANUAL] Update Editor documentation to current version
- Unfortunately we do not have time now. So I move to after performance sprint milestone.
- 12:00 PM bug #6228 (Resolved): Fix behavior of multi-language editing
- 11:54 AM bug #10045 (New): Open issues when updating portal translations
- 11:44 AM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
- 11:41 AM bug #10114 (Feedback): Problem with parser for author string with whitespace between initials
- 11:30 AM bug #10138 (Feedback): Details view is not updated after freetext change
- 10:52 AM Revision 1d603a0f (taxeditor): ref #10144: fix cancel
- 09:16 AM bug #10134: Changing from Synonym to MAN needs save, the other way round, save is not necessary
- I guess this fits not so well into the performance milestone therefore I put it to the next.
- 08:53 AM bug #10143 (New): After changing from a dynamic reference to another referenceType the accessed field is not removed
The accessed field is not of type ICdmFormElement and therefore not removed when the referenceType changes. This cl...
09/07/2022
- 11:26 PM bug #10138: Details view is not updated after freetext change
- Maybe related to #10111
- 11:05 AM bug #10138 (In Progress): Details view is not updated after freetext change
- The issue about the nameUsedInSource seems to be a problem of the parser, at the beginning of the parsing all element...
- 10:12 AM bug #10138 (Closed): Details view is not updated after freetext change
- ... which may lead to data loss.
WGB:
Fl. Cuba; ich habe eben 2 Synonyme eingegeben, und zwar folgendermaßen:
... - 11:22 PM bug #10139 (Closed): Existing name cannot be safed to be available for typification under a different reference in PhycoBank
- 09:05 PM bug #10139: Existing name cannot be safed to be available for typification under a different reference in PhycoBank
- Tested in the test system.
Working set exactly reproduced.
selected name saved and available for type-input.
Ty... - 08:14 PM bug #10139 (Resolved): Existing name cannot be safed to be available for typification under a different reference in PhycoBank
- Applied in changeset commit:cdmlib|5d739ccc2a2c943051afe05caa6142f2c9b7229a.
- 08:13 PM bug #10139: Existing name cannot be safed to be available for typification under a different reference in PhycoBank
- ```
com.vaadin.data.fieldgroup.FieldGroup$CommitException: Commit failed
at com.vaadin.data.fieldgroup.F... - 01:36 PM bug #10139 (Closed): Existing name cannot be safed to be available for typification under a different reference in PhycoBank
- Vaadin (07 Sep 2022):
Routine procedure:
Add a new registration for ….. an exsisting name
Select: Synedra longis... - 11:18 PM bug #10128: Creating new user throws NPE for invalid user names
- ??
- 11:16 PM bug #10115 (Duplicate): Create new reference denied for users
- This is probably a duplicate for #10116.
- 11:15 PM bug #10116 (Feedback): Create a new name denied for users
- Can you please check in phycobank on test if user "testuserWHK" still has these problems? I added the user manually t...
- 11:05 PM Revision 5fc5a35f (cdm-vaadin): ref #10104, ref 10067 update GrantedAuthorityRevokingRegistrationUpdateLister to new hibernate FlushMode
- 10:54 PM Revision d5c57711 (cdm-vaadin): ref #10104, ref 10067 update GrantedAuthorityRevokingRegistrationUpdateLister to new hibernate version (FlushMode still not adapted)
- 10:53 PM Revision 3cfeef69 (cdm-vaadin): cleanup
- 10:02 PM bug #10141 (Resolved): Exception (CCE) caused by logging setLevel in phycobank
- This should be fixed, please review.
- 09:21 PM bug #10141 (Closed): Exception (CCE) caused by logging setLevel in phycobank
- WHK:
Jiang et al.. 2001: A new species of Tragelomonas angelegt.
Art angelegt “Trachelomonas subplanctonica”
In-... - 10:01 PM Revision cace1fee (cdm-dataportal): cleanup
- 10:01 PM Revision 1f8b10fc (cdm-dataportal): ref #10141 remove setLevel in phycobank-dataportal
- 09:59 PM Revision 572994ea (cdm-vaadin): ref #10141 remove setLevel in phycobank-vaadin
- 09:57 PM Revision 421d5cb4 (cdmlib): cleanup
- 09:56 PM Revision 1ead145c (cdmlib): ref #10141 fix CCE in LogUtils.setLevel()
- 09:11 PM bug #10140 (New): Registration page shortly shows map even if no data exists
- AM:
wenn ich z.B. https://www.phycobank.org/cdm_dataportal/registration?identifier=http%3A//phycobank.org/103148 ... - 09:07 PM bug #9088 (Feedback): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
- What exactly needs to be done for the remaining check. Can this be done fast or should we create a new ticket?
Would... - 08:14 PM Revision 5d739ccc (cdmlib): fix #10139 try to fix NPE in RegistrationDTO.typeDesignationSetKeyToTypedEntity()
- 04:29 PM Revision ea5bc1d6 (taxeditor): sort labels for new reference menu
09/06/2022
- 03:29 PM bug #10137: Compressed table does not show derivates anymore
- The derivates column should contain icons for scans, DNA data or character data
see code :
~~~
ar... - 02:09 PM bug #10137: Compressed table does not show derivates anymore
- At the first view it seems that the dto is not filled correctly.
- 12:49 PM bug #10137: Compressed table does not show derivates anymore
- Please also check if type information is still available (I did not check)
- 12:49 PM bug #10137 (Closed): Compressed table does not show derivates anymore
- e.g. Campanula polyclada (https://campanula.e-taxonomy.net/cdm_dataportal/taxon/2e3aa801-7307-409c-bd39-d825f5f1e031/...
09/05/2022
- 10:21 AM Revision e7915b65 (cdm-dataportal): remove target directory
- 09:51 AM bug #8591: Multiple representations problem on setting synonym as basionym
- Hallo,
Fl. Cuba, Synonymie von Adenophyllum prophyllum.
Ich hatte ein Synonym (Tagetes cancellatus) hinzugefügt und...
09/03/2022
- 11:10 AM bug #5823 (Feedback): Fehler beim parallel Editieren von Referenzen
- This is a very old multiple-representations-problem ticket. Is there a reason why we think that it is still open or c...
- 11:05 AM bug #8510: Non unique object exception when creating FeatureStates
- Andreas Müller wrote in #note-4:
> We should check if this is still an open issue and/or if it is related to any oth...
09/02/2022
- 10:56 AM feature request #9771: Implement Cdm2Cdm for vocabularies
- A Problem are users used in Person or User
- 10:53 AM bug #10135: Created_by and when is missing for User and Group
- If this is not (very) fast to implement please remove tag and move to other milestone. It is not a critical issue.
- 10:52 AM bug #10135 (Closed): Created_by and when is missing for User and Group
- E.g.
08/31/2022
- 03:29 PM Revision 7bf9eb97 (cdmlib): ref #9711 change defaults for Cdm2CdmImportConfigurator
- 03:27 PM Revision a5f7d622 (cdmlib): replace detache by detach
- 03:26 PM Revision 2d68fc40 (cdmlib): cleanup
- 12:59 PM bug #10134 (New): Changing from Synonym to MAN needs save, the other way round, save is not necessary
- mail AM:
gibt es eigentlich einen Grund, warum bei Umwandlung Syn=>MAN gespeichert werden muss, bei MAN=>Syn aber ...
08/30/2022
- 01:43 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
- Only fields mapped as @Lob seem to have the problem (e.g. Reference.title but not Reference.abbrevTitle)
- 11:50 AM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
- Helpfull Queries:
~~~
SELECT *
FROM SpecimenOrObservationBase osb
WHERE osb.titleCache LIKE 'Mon%';
SELECT *... - 12:10 PM feature request #10133: Improve ontology state vocabularies
- SQL for moving "structure subtypes" to Structure Modifier:
~~~
UPDATE TermCollection tc
SET tc.termType = 'STMO'
WHE... - 12:08 PM feature request #10133: Improve ontology state vocabularies
- NoK:
die praktische Arbeit an einem CharacterTree / einer Matrix stößt einen doch auf Manches. So etwa, dass wir sei... - 12:07 PM feature request #10133 (Closed): Improve ontology state vocabularies
- Some state vocabularies in the additivity ontology are not really states or have a hybrid character state/structure. ...
- 12:03 PM Revision cfdc66fc (cdm-server): add env variable to set encoding
- 11:49 AM Revision 95d9c858 (cdm-server): add env variable to set encoding
08/29/2022
- 06:34 PM bug #10132 (In Progress): Coding of special characters in Vaadin/PhycoBank (in docker instance only)
- The problem seems to occur only when using the docker installation. When running the CDM Server on the default BGBM i...
- 12:52 PM bug #10132 (Closed): Coding of special characters in Vaadin/PhycoBank (in docker instance only)
- Copy a special character from a PDF, a MS Word file. Input of a special character by a user, using the keybord of a c...
- 12:26 PM feature request #10127: Add full reference information to sec. references in dataportal
- NaK:
eine Fußnote fände ich besser, so dass alle Referenzen direkt auf der Taxon-Seite angezeigt würden. Beiden zu... - 11:25 AM bug #10131: Improve media specimen formatting for type designations
- NaK (zu CDM-L Formatierung):
Guter Punkt, dort ist es auch halb-richtig in der Ausgabe, und die Reihenfolge ist an... - 10:46 AM bug #10131 (New): Improve media specimen formatting for type designations
- NaK:
... In der Ausgabe fehlt aber die Seite auf der die Abbildung zu finden ist und der Autor wird abgekürzt ausg... - 11:22 AM bug #10128 (Feedback): Creating new user throws NPE for invalid user names
- Is there a reason why you created your own regex and did not reuse the one in eu.etaxonomy.cdm.model.permission.User ...
- 11:18 AM bug #10128: Creating new user throws NPE for invalid user names
- yes
- 11:18 AM bug #10128: Creating new user throws NPE for invalid user names
- Is this for review?
- 11:11 AM bug #10128: Creating new user throws NPE for invalid user names
- There were two things to fix, first the validator only checked for empty strings not for the not allowed characters. ...
- 11:09 AM bug #10128 (Resolved): Creating new user throws NPE for invalid user names
- Applied in changeset commit:taxeditor|2c6ebebf07b709b6792ff9309b6dd6d39dbb5181.
- 11:16 AM bug #10130: Error Message in dataportal
- Sorry, I didn't see that this is solved already. So probably we do not necessarily need an example on test, but we ma...
- 11:05 AM bug #10130: Error Message in dataportal
- On production it is https://caryophyllales.org/cactaceae/cdm_dataportal/reference/b5d153d4-97a7-4f3d-b1f1-a0765bdd3ed...
- 10:26 AM bug #10130 (Resolved): Error Message in dataportal
- This was a problem of the default value for the parameter, this should be in ''
- 10:04 AM bug #10130 (Feedback): Error Message in dataportal
- Do we have an example in a test portal?
- 09:21 AM bug #10130 (Closed): Error Message in dataportal
- Use of undefined constant span - assumed 'span' (this will throw an Error in a future version of PHP)
- 11:11 AM Revision c34fc45d (taxeditor): ref #10128: use better dialog message
- 11:08 AM Revision 2c6ebebf (taxeditor): fix #10128: adapt validator for new username
- 10:18 AM Revision 99b21ba9 (cdm-dataportal): ref #10130: the default value for parameter needs \'
- 10:03 AM Revision cfe47149 (cdm-dataportal): ref #10130: do not create empty annotations part
08/27/2022
- 06:19 PM Revision c193fda8 (cdmlib-apps): ref #4670 fix further E+M problems in BerlinModelImport
- 04:32 PM Revision c5769cfd (cdmlib-apps): ref #4670 fix BerlinModelTaxonImport for non-EuroMed
- 04:31 PM Revision 9c000afd (cdmlib-apps): cleanup
- 04:29 PM Revision 7df5b145 (cdmlib-apps): ref #9359, ref #10072 replace log4j.properties by log4j.xml in app-import
- 02:49 PM Revision a8df3232 (cdmlib): cleanup
- 02:08 PM Revision 3bcf3e7b (cdmlib-apps): adapt app-import to latest changes
- 01:09 PM Revision d2973f10 (cdmlib-apps): ref #10092 changes to FloreGabonActivator
- 01:08 PM Revision 3bb3e6dd (cdmlib-apps): Adapt EfloraTaxonImport to Credit factory change
- 01:07 PM Revision bab269ce (cdmlib-apps): ref #9359, ref #10072 adapt app-import to log4j2 and cleanup
- 01:01 PM Revision 4ef7d1e0 (cdm-vaadin): ref #9359, ref #10072 final adaptations for upgrade to log4j2 in vaadin and cleanup
- 12:59 PM Revision 5c4b07f0 (cdmlib): ref #9359, ref #10072 final adaptations for upgrade to log4j2 in cdmlib
- 12:40 PM Revision 2a2a5802 (cdmlib): cleanup
08/26/2022
- 10:58 PM bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
- If not fast to implement please remove tag and move to other milestone.
- 10:57 PM bug #10129 (New): Allow to create MediaSpecimen when creating specimen for a type designation
- When creating a new specimen (unit) for a type designation one may currently only create a PreservedSpecimen. This sh...
- 03:52 PM bug #10114: Problem with parser for author string with whitespace between initials
- ERS:
ich hatte jetzt die Autoreninitialen vorläufig als D.C. ohne Leerzeichen eingetragen. Es genügt, das Leerzeic... - 03:45 PM task #7987: [DISUCSS] Do we need an editor in Reference linking to TeamOrPersonBase
- AM:
Ich habe die in der Priorität nochmal nach oben geschoben, da das wirklich ein dringendes Thema ist.
Wobei di... - 03:42 PM bug #10128 (Closed): Creating new user throws NPE for invalid user names
- ... instead the name should be validated before saving and if still an invalid name is saved the error should be cach...
- 02:38 PM feature request #10127 (Closed): Add full reference information to sec. references in dataportal
- Sec-references use the short form (author + year) in the dataportal (and other outputs). We should allow to add a foo...
- 01:10 PM task #10009: Cleanup dependencies in TaxEditor
- Online search and import works as expected, but importing from a file does not work anymore. I don't know whether thi...
- 12:02 PM task #10064: Upgrade cybertaxonomy.org to Drupal9
- Please have a look whether everything works now. I checked adding an image and editing the text, also the layout is t...
- 11:51 AM task #10064 (Resolved): Upgrade cybertaxonomy.org to Drupal9
- Andreas Müller wrote in #note-18:
> Also the old drupal databases should be archived?
All old drupal directories ... - 09:58 AM task #10064: Upgrade cybertaxonomy.org to Drupal9
- Andreas Müller wrote in #note-17:
> Uploading an image while editing content (in basic html mode) did not work. I alw... - 09:47 AM bug #10126 (New): Refresh original source element after changing from dynamic reference to not dynamic reference or other way round
- copied from #10057:
Also first implementation in TaxEditor implemented, see commit:29de040015b98 . However, the acce... - 09:45 AM feature request #10057 (Closed): Add "accessed" field to OriginalSourceBase
- Andreas Müller wrote in #note-7:
> This is implemented now in model and first implementations for OriginalSourceForm...
08/25/2022
- 08:16 PM bug #10007 (Closed): fix reindex jobs on jobber
- 05:25 PM task #10064 (Feedback): Upgrade cybertaxonomy.org to Drupal9
- Also the old drupal databases should be archived?
- 03:41 PM task #10064: Upgrade cybertaxonomy.org to Drupal9
- Uploading an image while editing content (in basic html mode) did not work. I always got the following error:
![](... - 03:29 PM task #10064: Upgrade cybertaxonomy.org to Drupal9
- There are still folders "/var/www/drupal-8.9", "/var/www/drupal-8" and "/var/www/_drupal-8" on edit-community. Can th...
- 10:35 AM task #10064: Upgrade cybertaxonomy.org to Drupal9
- Problems with url editing is fixed with an update to 9.4.5
- 01:48 PM Revision 20b1ef8a (cdmlib): ref #10118: add new PreferencePredicate
- 01:26 PM bug #10089 (Closed): Order TypeDesignationSetContainer by status type
- Katja Luther wrote in #note-10:
> Test cdmLight implementation
In HOmotypicGroup.csv the example above shows now:... - 10:08 AM bug #10089: Order TypeDesignationSetContainer by status type
- Test cdmLight implementation
- 01:09 PM bug #10118 (Resolved): Availability of partial misapplied should be configurable
- This is implemented now.
- 01:08 PM Revision 62b5eb57 (taxeditor): ref #10118: make availability of partial misapplied name configurable
- 12:14 PM bug #3536: Incorrect last version documentation for Editor
- The first commit was not enough, yet. I now also removed the maven-changes-plugin. Needs to be checked again after ne...
- 12:11 PM bug #3536: Incorrect last version documentation for Editor
- Applied in changeset commit:taxeditor|eca286fdec3a0e2d88f46d0efb83afaee19909ef.
- 11:16 AM bug #3536: Incorrect last version documentation for Editor
- Page still needs to be removed on server
- 12:10 PM Revision eca286fd (taxeditor): fix #3536 remove maven-changes-plugin from TaxEditor pom
- 10:58 AM task #10067 (Closed): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- All open issues moved to follow up ticket #10104 or related tickets
- 10:33 AM task #10125 (New): Upgrade jena dependency
- copied from #9359
* check how to upgrade to jena-tdb 3.0.0 (also check if commonsRDF is an alternative: https://c... - 10:20 AM task #10124 (In Progress): Adapt deprecated hibernate methods to suggested new methods
- copied from #10067
* deprecated calls in CdmEntityDaoBase (and maybe others), e.g. line 447 / createCriteria (depr...
08/24/2022
- 03:31 PM bug #10114 (In Progress): Problem with parser for author string with whitespace between initials
- This should have highest priority.
- 03:26 PM task #10072 (Closed): Upgrade fully to log4j2
- This should be fixed. Open issues moved to new tickets.
- 03:16 PM task #9205 (Closed): Remove apache-log4j-extras from TaxEditor dependencies
- 03:05 PM feature request #10083 (Closed): Add name relationship type "avoids homonym of"/"causes replacement name"
- Should be fixed. Open issues moved to related tickets.
- 11:12 AM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
- Actually there was a bug in cdmLight, this is fixed. Now the namerelationships are exported to the NameRelationship.c...
- 03:04 PM feature request #5655 (Closed): [DISCUSS] Do we need further "non xxx" relations?
- This should be fixed, open issues moved to related tickets.
- 02:48 PM bug #10123 (New): NameRelationship display should be more configurable in portal
- 02:47 PM bug #10120 (In Progress): After status change symbol not shown in navigator
- 02:07 PM bug #10120 (Closed): After status change symbol not shown in navigator
- 02:46 PM feature request #10103 (New): Add "Included" as default status to taxon node status
- 02:16 PM feature request #10103 (In Progress): Add "Included" as default status to taxon node status
- 02:45 PM bug #10122 (New): NameRelationship display should be more configurable in cdmLight
- 02:31 PM bug #10089: Order TypeDesignationSetContainer by status type
- mail WB:
Hallo,
das Type Statement in der HomotypicGroup.csv muss ich für Publikationen umsortieren. Beispiel:
Achyr... - 02:20 PM bug #10090 (Closed): Many LIEs in cdmserver log for Team.getCollectorTitleCache()
- 02:17 PM bug #10121 (In Progress): ConstraintViolationException when editing placement notes
- 02:15 PM bug #10121 (Worksforme): ConstraintViolationException when editing placement notes
- https://dev.e-taxonomy.eu/redmine/issues/10096#note-21
- 02:16 PM feature request #10096 (Closed): Add new TaxonNode status and make notes field more general
- 02:14 PM feature request #10096: Add new TaxonNode status and make notes field more general
- Katja Luther wrote in #note-21:
> When adding taxonnode status and status note, but this seems to be a problem with t... - 02:07 PM feature request #10096: Add new TaxonNode status and make notes field more general
- Katja Luther wrote in #note-22:
> Newly set status are not shown in the navigator (tested for 'taxon included in par... - 01:14 PM bug #9088 (In Progress): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
- The initial issue is fixed, for other elements this should be checked too.
- 12:42 PM bug #10119: New source should appear at the beginning of the list
- This needs further discussion on how to implement. The current implementation uses the fact that unpersisted CdmBase ...
- 11:50 AM bug #10119 (New): New source should appear at the beginning of the list
- Currently a new source details element appears at the end of a list of not saved sources, but should appear at the be...
- 11:46 AM bug #10118 (Closed): Availability of partial misapplied should be configurable
- mail WB:
es wäre schön, wenn man diese Option (partial misapplied) einstellbar ausschalten könnte, so dass man sie... - 11:27 AM Revision 7644f3dd (taxeditor): ref #9088: fix CCE for TypeDesignations
- 08:52 AM task #9975: Create new UML diagramms for the CDM
- UPDATE:
We decided to use UML Lab (https://www.yatta.de/products/uml-lab/de/download/)
Pros:
- Easy to handle
...
08/23/2022
- 03:38 PM feature request #10098 (Closed): Implement timePeriod for Credit in TaxEditor
- Works as expected.
- 03:04 PM Revision 657c46b5 (taxeditor): ref #10009: remove hibernate-search-engine again as it is not required by IOcuurenceService anymore
- 03:02 PM Revision 181447cd (cdmlib): ref #5655, #10083: fix cdmLight namerelationship handling
- 02:50 PM Revision 6ea669d4 (cdmlib): Merge remote-tracking branch 'origin/develop' into develop
- 02:12 PM Revision b8d40694 (cdmlib): ref #10009, ref #9359 replace hibernate search Rectangle by RectangleDTO
- 02:06 PM Revision 89cdafd5 (cdmlib): ref #10009, ref #9359 replace hibernate search Rectangle by RectangleDTO
- 01:59 PM Revision aebb5b71 (cdmlib): dummy
- 01:36 PM Revision ed9555a5 (cdmlib): ref #10009, ref #9359 replace hibernate search Rectangle by RectangleDTO
- 01:21 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
- Andreas Müller wrote in #note-12:
> Mail sent to datamanager to adapt their data (list of effected DBs see #note-5).... - 01:03 PM feature request #10110 (Closed): Show barcode also on PreservedSpecimen General details element not only on specific element
- This is fixed.
- 12:57 PM bug #10033 (Closed): For new FeatureTree only uuid is shown in dataportal
- Andreas Müller wrote in #note-9:
> If this is fixed already please add it to the release notes https://dev.e-taxonom... - 12:41 PM bug #10071 (Closed): TaxonNodeDtos should be created directly not from taxon objects
- Andreas Müller wrote in #note-3:
> Is this fixed?
Yes status note is shown in portal and dto creation is optimised. - 12:39 PM bug #10078 (Closed): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
- Code cleaning done.
- 12:39 PM Revision 2890a5e8 (taxeditor): ref #10078: code cleaning
- 12:31 PM bug #10084 (Closed): Adding a new specimen to character matrix fails
- Everything ok.
- 11:54 AM Revision 709d14a7 (taxeditor): ref #10009: revert some dependency issues
- 11:23 AM bug #10117 (New): Missing stacktrace for failed taxon node delete
- mail ERS:
es gelingt mir nicht, den Taxonknoten Gagea maroccana sec. Raab-Straube zu löschen. Ich habe schon alle ... - 11:10 AM feature request #10087 (Closed): Add taxon node source to status notes in cdmlight
- I think we can close this ticket. If there are open issues reported by users we will open a new ticket.
- 10:25 AM feature request #10087: Add taxon node source to status notes in cdmlight
- The code looks fine and if WB checked the output, the ticket can be closed
08/22/2022
- 03:07 PM bug #10116 (Closed): Create a new name denied for users
- Blocker (2, role user)
Not able to create a new name in a given reference (submitted by curator or admin)
Title: ... - 03:05 PM bug #10115 (Duplicate): Create new reference denied for users
- Role User:
Blocker (1, role user): not able to create a new reference
Title: Create new reference denied
Backgro... - 03:04 PM feature request #10096: Add new TaxonNode status and make notes field more general
- Newly set status are not shown in the navigator (tested for 'taxon included in parent taxon with doubts' and 'unplace...
- 02:55 PM feature request #10096: Add new TaxonNode status and make notes field more general
- When adding taxonnode status and status note, but this seems to be a problem with the note.
~~~
last remote method ... - 02:50 PM bug #10114: Problem with parser for author string with whitespace between initials
- ERS:
danke für das Ticket. Dabei ist zu beachten, dass dieser Fehler durchaus nicht immer auftritt, sondern sogar ... - 02:44 PM Revision 2b06f876 (taxeditor): revert remove of hibernate search in gitignore
- 02:13 PM Revision b698cbb5 (taxeditor): revert remove of hibernate search in pom
- 12:21 PM Revision 76a052cc (taxeditor): revert remove of hibernate search
- 12:09 PM task #9975: Create new UML diagramms for the CDM
- Can you still format the above comment as real table (see https://www.redmine.org/projects/redmine/wiki/RedmineTextFo...
08/19/2022
- 01:59 PM Revision 349f2c7c (taxeditor): ref #10080: always remove not_designated checkbox and create new
- 12:53 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- Andreas Müller wrote in #note-5:
> Has this been reported by a user? If yes please add as watcher.
I can not reme... - 12:52 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- Andreas Müller wrote in #note-4:
> I got an NPE when changing to no status:
>
> ~~~
> last remote method : https... - 12:43 PM feature request #10098: Implement timePeriod for Credit in TaxEditor
- Timeperiod is implemented, please review.
- 12:42 PM feature request #10098 (Resolved): Implement timePeriod for Credit in TaxEditor
- Applied in changeset commit:taxeditor|35c569e4b0ff1545d0d3a37d8736b4b70334441e.
- 12:42 PM Revision 35c569e4 (taxeditor): fix #10098: add timeperiod to creditelement
- 12:35 PM Revision ce3cc213 (taxeditor): fix bug with list of last references
- 11:50 AM feature request #10081 (Closed): Show name in source for sec ref of accepted taxon
- The whitespace is removed, so I close this ticket
- 11:47 AM Revision fe8ca5d8 (cdm-dataportal): ref #10081: add secNameInSourceSeparator to separator list
08/18/2022
- 12:43 PM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
- Adding the description is implemented now, we should discuss whether it should be collapsable.
- 12:38 PM bug #10107 (Resolved): i18n bug when editing media not having a default language title
- This should be fixed,please review
- 12:37 PM Revision bff0ad69 (taxeditor): ref #10107, #6228: fix default language handling
- 11:53 AM Revision 32071906 (taxeditor): ref #10107, #6228: add remove button to MultiLanguageTextElement and fix default text
- 11:51 AM bug #6228 (In Progress): Fix behavior of multi-language editing
- 11:51 AM bug #6228: Fix behavior of multi-language editing
- The issue that only two languages are saved is solved in the meanwhile, the missing deletion was added with the last ...
- 11:46 AM bug #8224 (Worksforme): Misleading initial language selection in TranslationWizard
- This is fixed in the meanwhile, no language and no text is selected in the right part of the translation wizard
08/17/2022
- 02:25 PM bug #10102 (Closed): Non-names formatted in italics
- Walter reviewed the export, sowe can close this ticket.
08/16/2022
- 03:06 PM bug #10114: Problem with parser for author string with whitespace between initials
- This exception also appears when trying to update sortindex in caryo_amaranthaceae.
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