Project

General

Profile

Activity

From 07/28/2022 to 08/26/2022

08/26/2022

10:58 PM bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
If not fast to implement please remove tag and move to other milestone. Andreas Müller
10:57 PM bug #10129 (New): Allow to create MediaSpecimen when creating specimen for a type designation
When creating a new specimen (unit) for a type designation one may currently only create a PreservedSpecimen. This sh... Andreas Müller
03:52 PM bug #10114: Problem with parser for author string with whitespace between initials
ERS:
ich hatte jetzt die Autoreninitialen vorläufig als D.C. ohne Leerzeichen eingetragen. Es genügt, das Leerzeic...
Andreas Müller
03:45 PM task #7987: [DISUCSS] Do we need an editor in Reference linking to TeamOrPersonBase
AM:
Ich habe die in der Priorität nochmal nach oben geschoben, da das wirklich ein dringendes Thema ist.
Wobei di...
Andreas Müller
03:42 PM bug #10128 (Closed): Creating new user throws NPE for invalid user names
... instead the name should be validated before saving and if still an invalid name is saved the error should be cach... Andreas Müller
02:38 PM feature request #10127 (Closed): Add full reference information to sec. references in dataportal
Sec-references use the short form (author + year) in the dataportal (and other outputs). We should allow to add a foo... Andreas Müller
01:10 PM task #10009: Cleanup dependencies in TaxEditor
Online search and import works as expected, but importing from a file does not work anymore. I don't know whether thi... Katja Luther
12:02 PM task #10064: Upgrade cybertaxonomy.org to Drupal9
Please have a look whether everything works now. I checked adding an image and editing the text, also the layout is t... Katja Luther
11:51 AM task #10064 (Resolved): Upgrade cybertaxonomy.org to Drupal9
Andreas Müller wrote in #note-18:
> Also the old drupal databases should be archived?
All old drupal directories ...
Katja Luther
09:58 AM task #10064: Upgrade cybertaxonomy.org to Drupal9
Andreas Müller wrote in #note-17:
> Uploading an image while editing content (in basic html mode) did not work. I alw...
Katja Luther
09:47 AM bug #10126 (New): Refresh original source element after changing from dynamic reference to not dynamic reference or other way round
copied from #10057:
Also first implementation in TaxEditor implemented, see commit:29de040015b98 . However, the acce...
Katja Luther
09:45 AM feature request #10057 (Closed): Add "accessed" field to OriginalSourceBase
Andreas Müller wrote in #note-7:
> This is implemented now in model and first implementations for OriginalSourceForm...
Katja Luther

08/25/2022

08:16 PM bug #10007 (Closed): fix reindex jobs on jobber
Andreas Müller
05:25 PM task #10064 (Feedback): Upgrade cybertaxonomy.org to Drupal9
Also the old drupal databases should be archived? Andreas Müller
03:41 PM task #10064: Upgrade cybertaxonomy.org to Drupal9
Uploading an image while editing content (in basic html mode) did not work. I always got the following error:
![](...
Andreas Müller
03:29 PM task #10064: Upgrade cybertaxonomy.org to Drupal9
There are still folders "/var/www/drupal-8.9", "/var/www/drupal-8" and "/var/www/_drupal-8" on edit-community. Can th... Andreas Müller
10:35 AM task #10064: Upgrade cybertaxonomy.org to Drupal9
Problems with url editing is fixed with an update to 9.4.5 Katja Luther
01:48 PM Revision 20b1ef8a (cdmlib): ref #10118: add new PreferencePredicate
Katja Luther
01:26 PM bug #10089 (Closed): Order TypeDesignationSetContainer by status type
Katja Luther wrote in #note-10:
> Test cdmLight implementation
In HOmotypicGroup.csv the example above shows now:...
Katja Luther
10:08 AM bug #10089: Order TypeDesignationSetContainer by status type
Test cdmLight implementation Katja Luther
01:09 PM bug #10118 (Resolved): Availability of partial misapplied should be configurable
This is implemented now. Katja Luther
01:08 PM Revision 62b5eb57 (taxeditor): ref #10118: make availability of partial misapplied name configurable
Katja Luther
12:14 PM bug #3536: Incorrect last version documentation for Editor
The first commit was not enough, yet. I now also removed the maven-changes-plugin. Needs to be checked again after ne... Andreas Müller
12:11 PM bug #3536: Incorrect last version documentation for Editor
Applied in changeset commit:taxeditor|eca286fdec3a0e2d88f46d0efb83afaee19909ef. Andreas Müller
11:16 AM bug #3536: Incorrect last version documentation for Editor
Page still needs to be removed on server Andreas Müller
12:10 PM Revision eca286fd (taxeditor): fix #3536 remove maven-changes-plugin from TaxEditor pom
Andreas Müller
10:58 AM task #10067 (Closed): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
All open issues moved to follow up ticket #10104 or related tickets Andreas Müller
10:33 AM task #10125 (New): Upgrade jena dependency
copied from #9359
* check how to upgrade to jena-tdb 3.0.0 (also check if commonsRDF is an alternative: https://c...
Andreas Müller
10:20 AM task #10124 (In Progress): Adapt deprecated hibernate methods to suggested new methods
copied from #10067
* deprecated calls in CdmEntityDaoBase (and maybe others), e.g. line 447 / createCriteria (depr...
Andreas Müller

08/24/2022

03:31 PM bug #10114 (In Progress): Problem with parser for author string with whitespace between initials
This should have highest priority. Andreas Müller
03:26 PM task #10072 (Closed): Upgrade fully to log4j2
This should be fixed. Open issues moved to new tickets. Andreas Müller
03:16 PM task #9205 (Closed): Remove apache-log4j-extras from TaxEditor dependencies
Andreas Müller
03:05 PM feature request #10083 (Closed): Add name relationship type "avoids homonym of"/"causes replacement name"
Should be fixed. Open issues moved to related tickets. Andreas Müller
11:12 AM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Actually there was a bug in cdmLight, this is fixed. Now the namerelationships are exported to the NameRelationship.c... Katja Luther
03:04 PM feature request #5655 (Closed): [DISCUSS] Do we need further "non xxx" relations?
This should be fixed, open issues moved to related tickets. Andreas Müller
02:48 PM bug #10123 (New): NameRelationship display should be more configurable in portal
Katja Luther
02:47 PM bug #10120 (In Progress): After status change symbol not shown in navigator
Andreas Müller
02:07 PM bug #10120 (Closed): After status change symbol not shown in navigator
Katja Luther
02:46 PM feature request #10103 (New): Add "Included" as default status to taxon node status
Andreas Müller
02:16 PM feature request #10103 (In Progress): Add "Included" as default status to taxon node status
Katja Luther
02:45 PM bug #10122 (New): NameRelationship display should be more configurable in cdmLight
Katja Luther
02:31 PM bug #10089: Order TypeDesignationSetContainer by status type
mail WB:
Hallo,
das Type Statement in der HomotypicGroup.csv muss ich für Publikationen umsortieren. Beispiel:
Achyr...
Katja Luther
02:20 PM bug #10090 (Closed): Many LIEs in cdmserver log for Team.getCollectorTitleCache()
Andreas Müller
02:17 PM bug #10121 (In Progress): ConstraintViolationException when editing placement notes
Katja Luther
02:15 PM bug #10121 (Worksforme): ConstraintViolationException when editing placement notes
https://dev.e-taxonomy.eu/redmine/issues/10096#note-21 Katja Luther
02:16 PM feature request #10096 (Closed): Add new TaxonNode status and make notes field more general
Katja Luther
02:14 PM feature request #10096: Add new TaxonNode status and make notes field more general
Katja Luther wrote in #note-21:
> When adding taxonnode status and status note, but this seems to be a problem with t...
Katja Luther
02:07 PM feature request #10096: Add new TaxonNode status and make notes field more general
Katja Luther wrote in #note-22:
> Newly set status are not shown in the navigator (tested for 'taxon included in par...
Katja Luther
01:14 PM bug #9088 (In Progress): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
The initial issue is fixed, for other elements this should be checked too. Katja Luther
12:42 PM bug #10119: New source should appear at the beginning of the list
This needs further discussion on how to implement. The current implementation uses the fact that unpersisted CdmBase ... Andreas Müller
11:50 AM bug #10119 (New): New source should appear at the beginning of the list
Currently a new source details element appears at the end of a list of not saved sources, but should appear at the be... Katja Luther
11:46 AM bug #10118 (Closed): Availability of partial misapplied should be configurable
mail WB:
es wäre schön, wenn man diese Option (partial misapplied) einstellbar ausschalten könnte, so dass man sie...
Katja Luther
11:27 AM Revision 7644f3dd (taxeditor): ref #9088: fix CCE for TypeDesignations
Katja Luther
08:52 AM task #9975: Create new UML diagramms for the CDM
UPDATE:
We decided to use UML Lab (https://www.yatta.de/products/uml-lab/de/download/)
Pros:
- Easy to handle
...
Belen Escobari

08/23/2022

03:38 PM feature request #10098 (Closed): Implement timePeriod for Credit in TaxEditor
Works as expected. Andreas Müller
03:04 PM Revision 657c46b5 (taxeditor): ref #10009: remove hibernate-search-engine again as it is not required by IOcuurenceService anymore
Andreas Müller
03:02 PM Revision 181447cd (cdmlib): ref #5655, #10083: fix cdmLight namerelationship handling
Katja Luther
02:50 PM Revision 6ea669d4 (cdmlib): Merge remote-tracking branch 'origin/develop' into develop
Andreas Müller
02:12 PM Revision b8d40694 (cdmlib): ref #10009, ref #9359 replace hibernate search Rectangle by RectangleDTO
Andreas Müller
02:06 PM Revision 89cdafd5 (cdmlib): ref #10009, ref #9359 replace hibernate search Rectangle by RectangleDTO
Andreas Müller
01:59 PM Revision aebb5b71 (cdmlib): dummy
Andreas Müller
01:36 PM Revision ed9555a5 (cdmlib): ref #10009, ref #9359 replace hibernate search Rectangle by RectangleDTO
Andreas Müller
01:21 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Andreas Müller wrote in #note-12:
> Mail sent to datamanager to adapt their data (list of effected DBs see #note-5)....
Katja Luther
01:03 PM feature request #10110 (Closed): Show barcode also on PreservedSpecimen General details element not only on specific element
This is fixed. Katja Luther
12:57 PM bug #10033 (Closed): For new FeatureTree only uuid is shown in dataportal
Andreas Müller wrote in #note-9:
> If this is fixed already please add it to the release notes https://dev.e-taxonom...
Katja Luther
12:41 PM bug #10071 (Closed): TaxonNodeDtos should be created directly not from taxon objects
Andreas Müller wrote in #note-3:
> Is this fixed?
Yes status note is shown in portal and dto creation is optimised.
Katja Luther
12:39 PM bug #10078 (Closed): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
Code cleaning done. Katja Luther
12:39 PM Revision 2890a5e8 (taxeditor): ref #10078: code cleaning
Katja Luther
12:31 PM bug #10084 (Closed): Adding a new specimen to character matrix fails
Everything ok. Katja Luther
11:54 AM Revision 709d14a7 (taxeditor): ref #10009: revert some dependency issues
Katja Luther
11:23 AM bug #10117 (New): Missing stacktrace for failed taxon node delete
mail ERS:
es gelingt mir nicht, den Taxonknoten Gagea maroccana sec. Raab-Straube zu löschen. Ich habe schon alle ...
Katja Luther
11:10 AM feature request #10087 (Closed): Add taxon node source to status notes in cdmlight
I think we can close this ticket. If there are open issues reported by users we will open a new ticket. Andreas Müller
10:25 AM feature request #10087: Add taxon node source to status notes in cdmlight
The code looks fine and if WB checked the output, the ticket can be closed Katja Luther

08/22/2022

03:07 PM bug #10116 (Closed): Create a new name denied for users
Blocker (2, role user)
Not able to create a new name in a given reference (submitted by curator or admin)
Title: ...
Wolf-Henning Kusber
03:05 PM bug #10115 (Duplicate): Create new reference denied for users
Role User:
Blocker (1, role user): not able to create a new reference
Title: Create new reference denied
Backgro...
Wolf-Henning Kusber
03:04 PM feature request #10096: Add new TaxonNode status and make notes field more general
Newly set status are not shown in the navigator (tested for 'taxon included in parent taxon with doubts' and 'unplace... Katja Luther
02:55 PM feature request #10096: Add new TaxonNode status and make notes field more general
When adding taxonnode status and status note, but this seems to be a problem with the note.
~~~
last remote method ...
Katja Luther
02:50 PM bug #10114: Problem with parser for author string with whitespace between initials
ERS:
danke für das Ticket. Dabei ist zu beachten, dass dieser Fehler durchaus nicht immer auftritt, sondern sogar ...
Andreas Müller
02:44 PM Revision 2b06f876 (taxeditor): revert remove of hibernate search in gitignore
Katja Luther
02:13 PM Revision b698cbb5 (taxeditor): revert remove of hibernate search in pom
Katja Luther
12:21 PM Revision 76a052cc (taxeditor): revert remove of hibernate search
Katja Luther
12:09 PM task #9975: Create new UML diagramms for the CDM
Can you still format the above comment as real table (see https://www.redmine.org/projects/redmine/wiki/RedmineTextFo... Andreas Müller

08/19/2022

01:59 PM Revision 349f2c7c (taxeditor): ref #10080: always remove not_designated checkbox and create new
Katja Luther
12:53 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
Andreas Müller wrote in #note-5:
> Has this been reported by a user? If yes please add as watcher.
I can not reme...
Katja Luther
12:52 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
Andreas Müller wrote in #note-4:
> I got an NPE when changing to no status:
>
> ~~~
> last remote method : https...
Katja Luther
12:43 PM feature request #10098: Implement timePeriod for Credit in TaxEditor
Timeperiod is implemented, please review. Katja Luther
12:42 PM feature request #10098 (Resolved): Implement timePeriod for Credit in TaxEditor
Applied in changeset commit:taxeditor|35c569e4b0ff1545d0d3a37d8736b4b70334441e. Katja Luther
12:42 PM Revision 35c569e4 (taxeditor): fix #10098: add timeperiod to creditelement
Katja Luther
12:35 PM Revision ce3cc213 (taxeditor): fix bug with list of last references
Katja Luther
11:50 AM feature request #10081 (Closed): Show name in source for sec ref of accepted taxon
The whitespace is removed, so I close this ticket Katja Luther
11:47 AM Revision fe8ca5d8 (cdm-dataportal): ref #10081: add secNameInSourceSeparator to separator list
Katja Luther

08/18/2022

12:43 PM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
Adding the description is implemented now, we should discuss whether it should be collapsable. Katja Luther
12:38 PM bug #10107 (Resolved): i18n bug when editing media not having a default language title
This should be fixed,please review Katja Luther
12:37 PM Revision bff0ad69 (taxeditor): ref #10107, #6228: fix default language handling
Katja Luther
11:53 AM Revision 32071906 (taxeditor): ref #10107, #6228: add remove button to MultiLanguageTextElement and fix default text
Katja Luther
11:51 AM bug #6228 (In Progress): Fix behavior of multi-language editing
Katja Luther
11:51 AM bug #6228: Fix behavior of multi-language editing
The issue that only two languages are saved is solved in the meanwhile, the missing deletion was added with the last ... Katja Luther
11:46 AM bug #8224 (Worksforme): Misleading initial language selection in TranslationWizard
This is fixed in the meanwhile, no language and no text is selected in the right part of the translation wizard Katja Luther

08/17/2022

02:25 PM bug #10102 (Closed): Non-names formatted in italics
Walter reviewed the export, sowe can close this ticket. Katja Luther

08/16/2022

03:06 PM bug #10114: Problem with parser for author string with whitespace between initials
This exception also appears when trying to update sortindex in caryo_amaranthaceae. Katja Luther

08/12/2022

01:38 PM Revision 55e5323a (taxeditor): ref #10108: with new implementation createTitle is not necessary and wrong
Katja Luther
12:27 PM feature request #10062: Migrate TaxEditor word documentation to markdown
Created all md files for Editor documentation. Katja Luther
12:27 PM bug #10114: Problem with parser for author string with whitespace between initials
The exception appears while session.flush() before starting search for matching persons in CdmGenericDaoImpl (line 638) Katja Luther
09:39 AM bug #10114 (Closed): Problem with parser for author string with whitespace between initials
mail ERS:
irgendetwas stimmt mit dem Parser nicht.
Ich bekomme diese Fehlermeldung, wenn ich lediglich eine Ini...
Katja Luther

08/11/2022

01:13 PM bug #10108 (In Progress): Description for MediaSpecimen not shown even if it exists (i18n)
Katja Luther
01:10 PM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
I would add the description not only a warning if a description exist.
Maybe we can make it collapsable, then it is ...
Katja Luther
01:12 PM Revision 5dec995b (taxeditor): ref #10108: add description field and handling i18n text like in media element
Katja Luther
01:11 PM Revision 2fac67f3 (taxeditor): in multiLanguageText use preferredLanguage also for refresh
Katja Luther
12:06 PM bug #9007 (Closed): Enable i18n support for media description UI
The ticket can be closed because now the language text is get by "getPreferedLanguageText" Katja Luther
09:39 AM Revision cafa2d8c (cdm-dataportal): revert test
Katja Luther
09:37 AM Revision 90ddfcaa (cdm-dataportal): fix compile error
Katja Luther
09:23 AM Revision 436e6bdf (cdm-dataportal): ref #10081: remove whitespace in front of separator
Katja Luther

08/10/2022

04:07 PM Revision b403a6b1 (cdm-dataportal): ref #10081: add test for secundum name in source
Katja Luther
02:39 PM bug #10102: Non-names formatted in italics
This should be fixed, send an example to Walter for review. Katja Luther
02:39 PM bug #10102 (Resolved): Non-names formatted in italics
Applied in changeset commit:cdmlib|241046afcdfe91c97acf02d438b5c4e0f57e3c4d. Katja Luther
02:39 PM Revision 241046af (cdmlib): fix #10102: non names should be in italics
Katja Luther
02:13 PM bug #10113: Exception when opening map in details view for linux
Katja Luther wrote in #note-1:
> mail KL:
>
> ich habe mal ein bisschen recherchiert und es scheint an einer fehl...
Katja Luther
02:12 PM bug #10113: Exception when opening map in details view for linux
mail KL:
ich habe mal ein bisschen recherchiert und es scheint an einer fehlenden library zu liegen, könntest Du e...
Katja Luther
02:08 PM bug #10113 (New): Exception when opening map in details view for linux
mail NK:
nur in der Linux Version des TaxEditor bekomme ich nachfolgende Fehlermeldung, wenn ich in den Faktendate...
Katja Luther
02:06 PM bug #10112 (New): Add a delay for the search in search dialogs
mail WB:
kann man im Auswahldialog Referenzen irgendwie eine * Eingabe am Anfang abfangen, sodass nicht gleich all...
Katja Luther
01:29 PM bug #10111: Data loss e.g. when entering type information
Sometimes the dirty flag is not set when changing the status and I think that I had a case where the specimen was rem... Katja Luther
09:09 AM bug #8764 (Worksforme): moving subtree results in NPE
This should be fixed because the sortindex problem is fixed. Katja Luther

08/04/2022

08:37 AM bug #10007 (Resolved): fix reindex jobs on jobber
Andreas Müller wrote in #note-11:
> upgrading some plugins lead to a cycle in dependencies which disabled many plugi...
Andreas Müller
08:34 AM bug #10007 (Feedback): fix reindex jobs on jobber
upgrading some plugins lead to a cycle in dependencies which disabled many plugins. The main reason seems to be
~...
Andreas Müller

08/02/2022

11:57 PM task #10072: Upgrade fully to log4j2
Also we may want to handle jboss logging via jsl4j, this is not yet added. Andreas Müller
11:48 PM task #10072: Upgrade fully to log4j2
Maybe this helps: https://stackoverflow.com/questions/30045873/log4j2-api-cannot-find-log4j2-core-in-osgi-environment Andreas Müller
11:48 PM task #10072: Upgrade fully to log4j2
Andreas Müller wrote in #note-15:
> There is still an issue with log4j-slf4j-impl in TaxEditor. For some reason it i...
Andreas Müller
11:19 PM task #10009: Cleanup dependencies in TaxEditor
Andreas Müller wrote in #note-7:
> Seems to work but still needs intensive testing and maybe some cleanup.
Cleanu...
Andreas Müller
10:55 PM task #10009: Cleanup dependencies in TaxEditor
Andreas Müller wrote in #note-10:
> For the following dependencies it is unclear if they are needed. They are marked...
Andreas Müller
03:43 PM task #10009: Cleanup dependencies in TaxEditor
Testing needs to be done in the "with java" verson. Andreas Müller
03:43 PM task #10009: Cleanup dependencies in TaxEditor
For the following dependencies it is unclear if they are needed. They are marked as "Only added for correct package e... Andreas Müller
10:50 PM Revision 4066bda3 (taxeditor): ref #10009 fully delete jcl-over-slf4j and log4j-slf4j-impl from git repo
Andreas Müller
10:49 PM Revision 09e461a6 (taxeditor): cleanup
Andreas Müller
10:45 PM Revision 670685c3 (taxeditor): ref #10009 re-add imaging to build.properties
Andreas Müller
10:26 PM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
Please review and check if there is any remaining issue not mentioned in followup ticket #10104.
Close afterwards.
Andreas Müller
10:17 PM Revision 091d1413 (taxeditor): ref #10009 try to remove spring-security-config
Andreas Müller
10:13 PM Revision 224f68c5 (taxeditor): ref #10009 try to remove spring-orm
Andreas Müller
10:09 PM Revision 42df8aed (taxeditor): ref #10009 try to remove spring-context-support
Andreas Müller
10:06 PM Revision 6c63036b (taxeditor): ref #10009 try to remove json-lib-2.4-jdk15
Andreas Müller
10:00 PM Revision 2988a396 (taxeditor): ref #10009 try to remove hibernate-commons-annotations (cont.)
Andreas Müller
09:59 PM Revision 8de239c1 (taxeditor): ref #10009 try to remove hibernate-search (cont.)
Andreas Müller
09:59 PM Revision 8e45e5fb (taxeditor): ref #10009 try to remove hibernate-search
Andreas Müller
09:50 PM Revision aed150fb (taxeditor): Revert "ref #10009 try to remove commons-imaging" (cont.)
Andreas Müller
09:39 PM Revision caf6fb19 (taxeditor): Revert "ref #10009 try to remove commons-imaging"
This reverts commit 2656c76547245cbe1b8abb2ddf597c5c95e16d95. Andreas Müller
09:32 PM Revision fde5fee1 (taxeditor): ref #10009 try to remove hibernate-commons-annotations
Andreas Müller
09:23 PM Revision 289bddaa (taxeditor): ref #10009 try to remove xercesImpl
Andreas Müller
09:17 PM Revision 2656c765 (taxeditor): ref #10009 try to remove commons-imaging (cont.)
Andreas Müller
09:16 PM Revision da85ff94 (taxeditor): ref #10009 try to remove commons-imaging
Andreas Müller
08:52 PM Revision 92ecc4db (taxeditor): remove duplicated commons-collections4 entry
Andreas Müller
08:51 PM Revision 1b54fed6 (taxeditor): ref #10009 fully remove commons-collections dependeny
Andreas Müller
08:28 PM Revision e941d346 (cdmlib): ref #10009 replace CircularFifoBuffer by ArrayBlockingQueue to avoid commons-collections
Andreas Müller
08:14 PM Revision 6779d238 (taxeditor): ref #10009 re-add log4j-slf4j-impl and jcl-over-slf4j to gitignore
Andreas Müller
08:11 PM Revision 544ca435 (taxeditor): ref #10009 add spring-jdbc for running tests (cont.)
Andreas Müller
08:05 PM Revision 16fa9188 (taxeditor): ref #10009 add spring-jdbc for running tests
Andreas Müller
07:31 PM Revision dbc272fa (taxeditor): ref #10009 fix classpath entry for jcl-over-slf4j (cont.)
Andreas Müller
07:18 PM Revision f875753d (taxeditor): ref #10009 fix classpath entry for jcl-over-slf4j
Andreas Müller
06:05 PM Revision 3075786e (taxeditor): ref #10009 add jcl-over-slf4j and log4j-slf4j-impl as non-ignored libraries
Andreas Müller
05:42 PM Revision fae1500b (taxeditor): cleanup
Andreas Müller
05:40 PM Revision fe77d8d4 (taxeditor): ref #10009 add commons-maths again as it is required by editor
Andreas Müller
04:54 PM task #9975: Create new UML diagramms for the CDM
UPDATE:
three tools were reconsidered:
| |UML_Designer(alignt center) |Papyrus(align cente...
Belen Escobari
04:38 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Mail sent to datamanager to adapt their data (list of effected DBs see #note-5).
Katja, could you please check if ...
Andreas Müller
03:52 PM Revision bf76e3f5 (taxeditor): ref #10009 remove invalid line in build.properties
Andreas Müller
03:40 PM Revision 81bc5519 (taxeditor): ref #10009 remove maybe unused dependecies in build.properties
Andreas Müller
03:39 PM Revision 1d6dedc4 (taxeditor): ref #10009 put maybe unused dependecies to the end in build.properties
Andreas Müller
03:30 PM feature request #10087: Add taxon node source to status notes in cdmlight
Sent mail to WGB for final testing.
Katja, could you please review?
Andreas Müller
03:27 PM bug #10089: Order TypeDesignationSetContainer by status type
Only implemented for cdmlight. Data portal does not use the TypeDesignationSetContainer yet. Andreas Müller
03:22 PM bug #10089: Order TypeDesignationSetContainer by status type
Asked WGB for testing (2022-08-02).
Katja, can you please review?
Andreas Müller
02:59 PM Revision 8923a5b4 (taxeditor): ref #10009 check if the "Only added for correct package export" dependencies are realy needed (including commons-math3)
Andreas Müller
02:42 PM Revision f2f77749 (taxeditor): javadoc
Andreas Müller
02:19 PM bug #10078 (Feedback): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
Bug is fixed. Notification sent to data managers.
Katja, can you still clean up the code a bit and then close the ...
Andreas Müller
01:46 PM bug #10078: Symbol and details view title of misapplied name type is not the same as shown in the type combo element
Instances with Non-default-MAN:
Nepenthaceae: 1 partial, ~10 pp => Mail sent to WGB
Caryo_spp: 1 partial => Mail se...
Andreas Müller
01:45 PM bug #10078: Symbol and details view title of misapplied name type is not the same as shown in the type combo element
Non-default MAN:
~~~
SELECT tr.id relId, dtb.titleCache relType, tb1.titleCache MAN, tb2.titleCache accTaxon
FROM De...
Andreas Müller

07/30/2022

11:12 PM feature request #10082 (Closed): Improve formatting for pro parte misapplications
I checked on https://www.europlusmed.org/cdm_dataportal/taxon/63fead7a-662a-4082-9503-c6ea994c2049 and it looks fine. Andreas Müller
12:22 AM feature request #10082 (Resolved): Improve formatting for pro parte misapplications
Now it works in the dataportal, too:
![](clipboard-202207300021-sgo4r.png)
Katja, can you please review.
Andreas Müller
10:51 PM bug #10007 (Resolved): fix reindex jobs on jobber
This is more or less done. Maybe still need to do some cleanup. Andreas Müller
09:49 PM bug #9979: Flora Greece shows large images
Andreas Müller wrote in #note-11:
> The method findRepresentations($media) uses strict=true for thumbnail retrieval...
Andreas Müller
07:49 PM bug #9979 (In Progress): Flora Greece shows large images
Andreas Müller
06:53 PM bug #9979: Flora Greece shows large images
The method findRepresentations($media) uses strict=true for thumbnail retrieval. This is dangerous, because in this ... Andreas Müller
06:46 PM bug #9979: Flora Greece shows large images
The service which is called by the portal page https://api.cybertaxonomy.org/flora-greece/portal/taxon/8e75f1a8-e7f9-... Andreas Müller
09:09 PM Revision 90bd882f (cdm-server): Merge branch 'release/5.32.0' into develop
jenkins
09:09 PM Revision 4acfd0c1 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
09:08 PM Revision 203aade6 (cdm-server): updating poms for branch'release/5.32.0' with non-snapshot versions
jenkins
09:06 PM Revision 093822c6 (cdm-webapp): Merge branch 'release/5.32.0' into develop
jenkins
09:06 PM Revision 38074bbf (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
09:05 PM Revision 3df7d64e (cdm-webapp): updating poms for branch'release/5.32.0' with non-snapshot versions
jenkins
09:05 PM Revision 66be2647 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.32.0
jenkins
08:59 PM Revision 086ca01c (cdm-vaadin): Merge branch 'release/5.32.0' into develop
jenkins
08:59 PM Revision 7bed910a (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
08:56 PM Revision cebafd76 (cdm-vaadin): updating poms for branch'release/5.32.0' with non-snapshot versions
jenkins
08:56 PM Revision 97775d78 (cdm-vaadin): jenkins bumping cdmlib.version to 5.32.0
jenkins
08:56 PM Revision d73c0ce8 (cdm-dataportal): Merge branch 'release/5.32.0' into develop
jenkins
08:56 PM Revision 7b01bcab (cdm-dataportal): updating poms for branch'release/5.32.0' with non-snapshot versions
jenkins
08:55 PM Revision c369cd09 (cdm-dataportal): release-preparation: production level css
jenkins
08:55 PM Revision f28c4ae0 (taxeditor): Merge branch 'release/5.32.0' into develop
jenkins
08:55 PM Revision 2c78f50b (taxeditor): Merge branch 'release/5.32.0'
jenkins
08:50 PM Revision 6168faeb (cdmlib): Updating develop poms back to pre merge state
jenkins
08:50 PM Revision 47168d98 (cdmlib): Merge branch 'master' into develop
jenkins
08:50 PM Revision 659f4aae (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
08:50 PM Revision 970ba886 (cdmlib): Merge branch 'release/5.32.0'
jenkins
08:33 PM Revision 24196586 (cdmlib): updating poms for branch'release/5.32.0' with non-snapshot versions
jenkins
08:28 PM Revision 29925b4c (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.32.0-SNAPSHOT
jenkins
08:28 PM Revision b7cfa781 (cdm-webapp): updating poms for 5.33.0-SNAPSHOT development
jenkins
08:28 PM Revision 8ab15c36 (cdm-webapp): updating poms for 5.32.0 branch with snapshot versions
jenkins
08:28 PM Revision 1885ffe3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.33.0-SNAPSHOT
jenkins
08:27 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
If this is fixed already please add it to the release notes https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/Rele... Andreas Müller
08:27 PM Revision aa965bd8 (taxeditor): Updated version in pom / project files to taxeditor version : 5.33.0-SNAPSHOT and cdmlib version : 5.33.0-SNAPSHOT
jenkins
08:27 PM Revision 6d39f34f (taxeditor): Updated version in pom / project files to taxeditor version : 5.32.0 and cdmlib version : 5.32.0
jenkins
08:26 PM Revision 54241228 (cdm-vaadin): jenkins bumping cdmlib.version to 5.32.0-SNAPSHOT
jenkins
08:26 PM Revision 7ba7b82c (cdm-vaadin): updating poms for 5.33.0-SNAPSHOT development
jenkins
08:26 PM Revision b5243db3 (cdm-vaadin): updating poms for 5.32.0 branch with snapshot versions
jenkins
08:26 PM Revision b3141578 (cdm-vaadin): jenkins bumping cdmlib.version to 5.33.0-SNAPSHOT
jenkins
08:26 PM Revision b69aaf5b (cdm-dataportal): updating poms for 5.33.0-SNAPSHOT development
jenkins
08:26 PM Revision 5fe24a67 (cdm-server): updating poms for 5.33.0-SNAPSHOT development
jenkins
08:23 PM Revision f3f9d5f9 (cdmlib): updating poms for 5.33.0-SNAPSHOT development
jenkins
08:23 PM Revision 72bf768e (cdmlib): updating poms for 5.32.0 branch with snapshot versions
jenkins
07:54 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Before fully closing also check #5655 Andreas Müller
04:20 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Dataportal and cdmlight updated commit:cdm-dataportal|bf522fd0e17 and commit:f951f09989936db85
I created a temporary...
Andreas Müller
07:10 PM Revision b11ee7b3 (taxeditor): adapt addGrandChildPolytomousKeyNode test but still ignored
Andreas Müller
07:10 PM Revision ed20c18b (taxeditor): reenable readAllPolytomousKeys test
Andreas Müller
07:09 PM Revision c2b55770 (taxeditor): cleanup
Andreas Müller
06:59 PM Revision 6df5928c (cdmlib): cleanup
Andreas Müller
06:58 PM Revision 499e4576 (cdm-dataportal): ref #9979 remove strict size restriction for thumbnails
Andreas Müller
06:57 PM Revision 4a3a8785 (cdm-dataportal): cleanup
Andreas Müller
05:13 PM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
Andreas Müller wrote in #note-36:
> Should be resolved. All open issues moved to #10104.
>
> Still need to check ...
Andreas Müller
05:05 PM Revision 4fccbc69 (cdmlib): ref #10067 make typed query an hibernate query
Andreas Müller
05:05 PM Revision edf29af6 (cdmlib): ref #10067 test if Query<Object[]> works
Andreas Müller
05:04 PM Revision 114cd073 (cdmlib): cleanup
Andreas Müller
04:32 PM Revision c1d1ac33 (cdm-vaadin): ref #10037 add logging to account registration
Andreas Müller
04:19 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
I added "is non" to dataportal output commit:cdm-dataportal|bf522fd0e17. Can you please check for cdmlight and close ... Andreas Müller
03:35 PM Revision 05aa14e7 (cdm-dataportal): ref #10096 fix taxon node status label in dataportal test
Andreas Müller
03:31 PM Revision f951f099 (cdmlib): ref #10083 add avoids homonym of to nonRelNames in cdmlight
Andreas Müller
03:30 PM Revision 8c9ff01f (cdmlib): fix trim of nonRelNames
Andreas Müller
03:30 PM Revision 5f97d803 (cdmlib): cleanup
Andreas Müller
03:19 PM Revision bf522fd0 (cdm-dataportal): ref #10083 add "avoids homonym" and "is not" to dataportal settings
Andreas Müller
02:08 PM bug #10111 (In Progress): Data loss e.g. when entering type information
Andreas Müller
02:08 PM bug #10111: Data loss e.g. when entering type information
AM:
Hallo Walter,
ich habe mir das jetzt mal angesehen, konnte es erst nicht, dann ein paar Mal quasi direkt hi...
Andreas Müller
12:31 AM bug #10111: Data loss e.g. when entering type information
That the "Source" element is not shown (last mail from WGB) is a known issue handled at #10080 Andreas Müller
12:30 AM bug #10111 (In Progress): Data loss e.g. when entering type information
Sometimes type information gets lost when entered without immediate saving in type designation element
WGB:
mir...
Andreas Müller
12:23 PM Revision d643a800 (taxeditor): fix NPE in InspectSessionsDialog
Andreas Müller
11:13 AM Revision 4a879017 (cdmlib): add PermissionClass for TextualTypeDesignation
Andreas Müller
11:13 AM Revision 7f5726f4 (cdmlib): move object name to beginning in CdmEntityInfo.label
Andreas Müller
11:12 AM Revision 1f8892fb (cdmlib): cleanup
Andreas Müller
10:49 AM Revision b12da30d (taxeditor): cleanup
Andreas Müller
10:32 AM Revision 7fefafde (taxeditor): sort entities by fieldname in InspectSessionsDialog
Andreas Müller
10:30 AM Revision fb74317f (cdmlib): move fieldName to beginning in CdmEntityInfo.label
Andreas Müller
08:58 AM Revision 95f83e6e (cdmlib): ref #10096 adapt cdmLight tests to use current TaxonNodeStatus.label
Andreas Müller
08:48 AM Revision b8fec484 (cdm-dataportal): ref #10096 adapt dataportal tests to use current TaxonNodeStatus.label
Andreas Müller
08:42 AM Revision ba55972b (cdmlib): ref #10096 add short label to TaxonNodeStatus
Andreas Müller
08:39 AM Revision 8a8db6f7 (cdmlib): ref #10096 use longer form for TaxonNodeStatus labels
Andreas Müller
01:27 AM Revision 9a7edb27 (cdm-dataportal): ref #10096 adapt some failing tests related to TaxonNodeStatus label and ordering (cont.)
Andreas Müller
01:12 AM Revision 2c16778b (cdm-dataportal): cleanup
Andreas Müller
01:12 AM Revision b7997734 (cdm-dataportal): ref #10096 adapt some failing tests related to TaxonNodeStatus label and ordering
Andreas Müller
12:09 AM feature request #10110: Show barcode also on PreservedSpecimen General details element not only on specific element
Please review. Andreas Müller
12:05 AM feature request #10110 (Resolved): Show barcode also on PreservedSpecimen General details element not only on specific element
Applied in changeset commit:taxeditor|bbebd47509e2bf94b059147209e53209836558b6. Andreas Müller
12:05 AM Revision bbebd475 (taxeditor): fix #10110 move barcode to general page
Andreas Müller
12:04 AM Revision bc54c30f (taxeditor): cleanup
Andreas Müller

07/29/2022

11:51 PM feature request #10110 (Closed): Show barcode also on PreservedSpecimen General details element not only on specific element
WGB:
in diesem Formular ist der barcode erst auf der letzten Seite zu finden; im Bulk Editor und bei der EIngabe v...
Andreas Müller
10:39 PM feature request #10082: Improve formatting for pro parte misapplications
In dataportal it does not work yet as symbol is always rendered to "left" and "block", not "inline". I try new tagtyp... Andreas Müller
09:29 PM feature request #10082: Improve formatting for pro parte misapplications
In TaxEditor it works Andreas Müller
08:15 PM feature request #10082 (In Progress): Improve formatting for pro parte misapplications
implemented in formatter, still need to check how this looks like on a taxon page Andreas Müller
10:35 PM Revision 8436c9db (cdmlib): use inlineSymbol not symbol for splitted symbol
Andreas Müller
10:35 PM Revision 0419bfc2 (cdmlib): cleanup
Andreas Müller
09:28 PM Revision c41902de (cdmlib): cleanup and javadoc
Andreas Müller
09:27 PM Revision a8eb51e8 (cdmlib): ref #10082 split MAN pro parte symbol in formatter (cont.)
Andreas Müller
09:00 PM Revision c5e7d4d0 (taxeditor): ref #10096 fix placement notes label in default messages
Andreas Müller
08:53 PM bug #10084 (Resolved): Adding a new specimen to character matrix fails
It looked to me as you did not yet revert, so I tried to do this by commit:78d9e692 . Please review. I already checke... Andreas Müller
08:49 PM task #10109 (New): Investigate best practice for HQL with enumset
Sine #7957 we use EnumSets as types. Hibernate mapping is implemented in EnumSetUserType class. The open issue here i... Andreas Müller
08:14 PM Revision 7d75bc7a (cdmlib): ref #10082 split MAN pro parte symbol in formatter
Andreas Müller
08:14 PM Revision ced7583b (cdmlib): cleanup
Andreas Müller
07:40 PM Revision 7fff6c03 (cdmlib): cleanup (rename reverse->inverse)
Andreas Müller
07:30 PM Revision ca31f2e6 (cdmlib): ref #10096 add correct UTF8 for status unresolved
Andreas Müller
07:29 PM Revision c22f14af (cdmlib): javadoc
Andreas Müller
07:13 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
Has this been reported by a user? If yes please add as watcher. Andreas Müller
07:13 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
I got an NPE when changing to no status:
~~~
last remote method : https://test.e-taxonomy.eu:443/cdmserver/rem_co...
Andreas Müller
07:07 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
To me it happens also after changing to other designation status therefore I adapted the title.
The workarounds se...
Andreas Müller
07:03 PM Revision 16512021 (taxeditor): ref #10080 fix NPE when changing TypeDesignationStatus to NO_SELECTION
Andreas Müller
07:02 PM Revision 121b5aa2 (taxeditor): cleanup
Andreas Müller
06:26 PM bug #10078 (Resolved): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
I give this to me for updating data after the release. Give back to KL for cleanup and close afterwards. Andreas Müller
06:21 PM bug #9007 (Resolved): Enable i18n support for media description UI
I guess this is solved and can be closed? Remaining issues copied to new tickets. Please move back to original milest... Andreas Müller
06:19 PM bug #10108 (Closed): Description for MediaSpecimen not shown even if it exists (i18n)
copied from #9007#note-11
* the description is not available at all (but there might be data if the media reused a...
Andreas Müller
06:16 PM bug #10107: i18n bug when editing media not having a default language title
priority needs to be discussed Andreas Müller
06:15 PM bug #10107 (Closed): i18n bug when editing media not having a default language title
copied from #9007#note-11
i18n editing of the title is not available here, and to me it looks like when editing t...
Andreas Müller
06:05 PM feature request #8777: Make visiblity of CDM Source configurable
Query to find example:
~~~
SELECT *
FROM OriginalSourceBase osb INNER JOIN DescriptionElementBase deb ON deb.id ...
Andreas Müller
03:38 PM feature request #8777 (Resolved): Make visiblity of CDM Source configurable
Andreas Müller wrote in #note-5:
> Andreas Müller wrote:
> > ... hmm, maybe an even better solution is to show the ...
Andreas Müller
05:47 PM bug #10101: Correct mapping and handling of sorted tree structures
Finding duplicates:
~~~
SELECT pkn.key_id, pkn.parent_id, pkn.sortindex, COUNT(*) AS n
FROM PolytomousKeyNode pkn
GR...
Andreas Müller
02:15 PM bug #10101: Correct mapping and handling of sorted tree structures
Comment from onMerge in PostMergeEntityListener:
~~~
Added in context of working on #10101, it was unclear to me...
Andreas Müller
02:05 PM bug #10101: Correct mapping and handling of sorted tree structures
I removed the HHH_9751_Util class as it is currently not used anymore, please recreate from commit:cb923587ce746 and ... Andreas Müller
01:36 PM bug #10101 (In Progress): Correct mapping and handling of sorted tree structures
I added tests for mergeDetached and saveDetached on nodes and trees and with removal and move of nodes to PolytomousK... Andreas Müller
03:39 PM Revision 6f5e7139 (taxeditor): ref #8777 try to filter CDM Source in Original Sources if no data exist (it is read only)
Andreas Müller
03:33 PM Revision 6aef0d5d (taxeditor): remove deproxy
Andreas Müller
03:31 PM Revision 09abc656 (taxeditor): ref #10101 remove HHH_9751 from TaxEditor
Andreas Müller
03:29 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
Please still remove the whitespace (see #note-13 and review the cdmlight implementation). Then we can close the ticket. Andreas Müller
03:26 PM bug #10034 (Closed): Flat feature tree throws exception
Andreas Müller
03:26 PM bug #10034: Flat feature tree throws exception
Moved open issues to #10053 and close this ticket. Andreas Müller
03:25 PM bug #10106 (New): Open issues from feature tree editing
copied from #10034#note-7
However, the labeling of the tree still behaves strange sometimes. If you add a child th...
Andreas Müller
03:20 PM Revision caafa683 (taxeditor): ref #10096 use symbol for taxon node status, not ASCII
Andreas Müller
03:18 PM Revision f8bc707d (taxeditor): cleanup
Andreas Müller
03:09 PM task #10072: Upgrade fully to log4j2
I also had problems installing the correct logging when running cdmlib test in IDE (here tests in cdmlib-services). T... Andreas Müller
03:08 PM task #10072: Upgrade fully to log4j2
TaxEditor issue moved to new ticket #10105. Andreas Müller
03:07 PM bug #10105 (New): Fix logging in TaxEditor after migration to log4j 2
for details see #10072#note-15
There are error message when starting the editor. Also in tests.
log4j-slf4j-im...
Andreas Müller
03:03 PM bug #10033 (Feedback): For new FeatureTree only uuid is shown in dataportal
Are there still open issues? Andreas Müller
02:57 PM bug #10071 (Feedback): TaxonNodeDtos should be created directly not from taxon objects
Is this fixed? Andreas Müller
02:55 PM Revision 01d4b08d (cdmlib): fix TaxonNodeServiceImplTest.testSaveDetached
Andreas Müller
02:36 PM task #10067 (Resolved): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
Should be resolved. All open issues moved to #10104.
Still need to check the
~~~
TypedQuery<String[]>
~~~
issue.
Andreas Müller
02:34 PM task #10104 (New): Cleanup after hibernate v5.4.33 migration
for details see #10067 . Some cleanup is still needed.
Open issues are:
* Check for Queries with TypeQuery<Stri...
Andreas Müller
02:17 PM Revision d80bd653 (cdmlib): ref #10067 adapt KeywordAnalyzer handling to v5.4.33 (only used for TaxonName.nameCache)
Andreas Müller
02:13 PM Revision 1aa6c88f (cdmlib): ref #10101 delegat onMerge(event) to onMerge(event, alreadyCopied) in PostMergeEntityListener
Andreas Müller
02:06 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
I removed the HHH_9751_Util class as it is currently not used anymore, please recreate from commit:cb923587ce746 and ... Andreas Müller
12:54 PM task #8127 (Discussed): [Reminder] to check if Hibernate Null Value bug still exists
The PolytoumsKey loading issue seems to be solved in TaxEditor by fixes done for #10101. However, the tests created f... Andreas Müller
02:04 PM Revision cb923587 (cdmlib): ref #10101, ref #8127, ref #3722, ref #5536 remove HHH_9751_Util class as it is not used anymore
Andreas Müller
02:01 PM Revision 500e20cf (cdmlib): cleanup
Andreas Müller
02:00 PM Revision e5477781 (cdmlib): ref #10101 removed cascade from TermNode.parent, not needed and probably also not correct
Andreas Müller
01:57 PM Revision 3ad25ffd (cdmlib): ref #10101 removed cascade from TermRelationBase.graph, not needed and probably also not correct
Andreas Müller
01:55 PM Revision 520f2d6d (cdmlib): ref #10101 add testSaveDetachedWithMove test to PolytomousKeyNodeServiceTest
Andreas Müller
01:54 PM Revision 78d9e692 (cdmlib): ref #10084 revert filtering by description type in query, needs further investigation
Andreas Müller
01:54 PM Revision 13b70d09 (cdmlib): ref #10084 adapt query to TypedQuery
Andreas Müller
01:53 PM Revision ecbb164c (cdmlib): cleanup
Andreas Müller
01:25 PM Revision 63e1c600 (cdmlib): ref #10101 add saveDetached tests to PolytomousKeyNodeServiceTest (and replace save by merge in other tests)
Andreas Müller
01:23 PM Revision d5e92c4b (cdmlib): ref #10101 add (partly ignored) tests to TaxonNodeServiceImplTest and TermNodeServiceImplTest
Andreas Müller
12:38 PM Revision 4e5b8da0 (cdmlib): ref #10096 adapt cdmlight test to longer taxon node status labels
Andreas Müller
12:34 PM feature request #10103 (New): Add "Included" as default status to taxon node status
Needs update script for existing data.
For details see #10096
Andreas Müller
12:32 PM feature request #10096: Add new TaxonNode status and make notes field more general
AM:
ich habe das jetzt mal implementiert. Es sollte im nächsten Release (vermutlich noch diese Woche) drin sein.
...
Andreas Müller
12:08 PM Revision 378498f3 (cdmlib): ref #10096 add long labels to TaxonNodeStatus and add commented default status
Andreas Müller
11:09 AM bug #10102 (Closed): Non-names formatted in italics
WGB:
mir ist eben dann auch aufgefallen, dass die „non“-Namen nicht kursiv formatiert werden:
− <i>Achyranthes<...
Andreas Müller
01:04 AM Revision b45cb977 (cdmlib): cleanup
Andreas Müller

07/28/2022

10:13 PM Revision 4efb0c4a (cdmlib): ref #10101 catch and log no-session exception in PostMergeEntityListener instead of removing initialization completely
Andreas Müller
09:34 PM Revision ccd3aaab (cdmlib): ref #10101 again preliminary remove children initialization in PostMergeEntityListener
Andreas Müller
08:59 PM Revision 4263e86b (cdmlib): return false in finally again, just in case this is important
Andreas Müller
08:36 PM Revision 031c8642 (cdmlib): ref #10101 add the childNodes touche for TaxonNode and TermNode again in PostMergeEntityListener
Andreas Müller
08:02 PM Revision 9f707aab (cdmlib): ref #10101 preliminary remove children initialization in PostMergeEntityListener
Andreas Müller
07:27 PM Revision 96326c59 (cdmlib): ref #10101 adapt PolytomousKeyNodeServiceTest to new orphaned delete method in services
Andreas Müller
07:20 PM Revision 472c6b76 (cdmlib): cleanup and allow merge with objectsToRemove in all services
Andreas Müller
06:24 PM Revision 2c08ec06 (cdmlib): ref #10101 add sortindex fix to taxon node and term node, too
Andreas Müller
06:23 PM Revision 93d9d454 (cdmlib): ref #10101 fix sortindex gaps in polytomous key merge
Andreas Müller
06:08 PM Revision 53f3deea (cdmlib): add cleansweep to PolytomousKeyNodeServiceTest tests
Andreas Müller
05:52 PM Revision 64ac4a3d (cdmlib): javadoc
Andreas Müller
05:52 PM Revision cf36c59d (cdmlib): ref #10101 fix possbile null value in refreshNodeNumbering
Andreas Müller
05:33 PM bug #10101: Correct mapping and handling of sorted tree structures
Code comment from PostMergeEntityListener.java:
~~~
// #10101 the following code tried to handle orphanRemoval for ...
Andreas Müller
09:25 AM bug #10101 (In Progress): Correct mapping and handling of sorted tree structures
We currently have 3 sorted tree structures in the CDM: Classifications, TermTrees and PolytomousKeys.
The correct ...
Andreas Müller
05:28 PM Revision e1284d9a (cdmlib): cleanup
Andreas Müller
05:26 PM Revision 794f69f0 (cdmlib): javadoc
Andreas Müller
05:25 PM Revision e6cd93a9 (cdmlib): ref #10101 add commented implementation for trying to handle orphan removal in the PostMergeEntityListener
Andreas Müller
04:48 PM Revision ae0e8692 (cdmlib): handle non-persisted objects in delete()
Andreas Müller
04:47 PM Revision 8f79b3aa (cdmlib): ref #3722, ref #8127, ref #5536, ref #10101 adapt test for removing PKNode and add new test for moving node and add LIE handling for node removal
Andreas Müller
04:45 PM Revision 0e628c63 (cdmlib): cleanup
Andreas Müller
04:40 PM Revision 28f29426 (cdmlib): add logging for exceptions in CdmPreDataChangeListener
Andreas Müller
02:05 PM Revision 8b07f256 (cdmlib): ref #10101 add some javadoc
Andreas Müller
10:50 AM Revision 60a7c724 (cdmlib): cleanup
Andreas Müller
12:47 AM Revision 473eee48 (cdmlib): ref #3722, ref #8127, ref #5536 preliminary make TermNode.children not orphanRemoval again
Andreas Müller
12:47 AM Revision edd423cc (cdmlib): cleanup
Andreas Müller
12:29 AM Revision a405f029 (cdmlib): ref #3722, ref #8127, ref #5536 remove sortIndex field check from SortIndexUpdaterWrapperTest
Andreas Müller
 

Also available in: Atom