Activity
From 07/23/2022 to 08/21/2022
08/19/2022
- 12:53 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- Andreas Müller wrote in #note-5:
> Has this been reported by a user? If yes please add as watcher.
I can not reme... - 12:52 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- Andreas Müller wrote in #note-4:
> I got an NPE when changing to no status:
>
> ~~~
> last remote method : https... - 12:43 PM feature request #10098: Implement timePeriod for Credit in TaxEditor
- Timeperiod is implemented, please review.
- 12:42 PM feature request #10098 (Resolved): Implement timePeriod for Credit in TaxEditor
- Applied in changeset commit:taxeditor|35c569e4b0ff1545d0d3a37d8736b4b70334441e.
- 11:50 AM feature request #10081 (Closed): Show name in source for sec ref of accepted taxon
- The whitespace is removed, so I close this ticket
08/18/2022
- 12:43 PM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
- Adding the description is implemented now, we should discuss whether it should be collapsable.
- 12:38 PM bug #10107 (Resolved): i18n bug when editing media not having a default language title
- This should be fixed,please review
- 11:51 AM bug #6228 (In Progress): Fix behavior of multi-language editing
- 11:51 AM bug #6228: Fix behavior of multi-language editing
- The issue that only two languages are saved is solved in the meanwhile, the missing deletion was added with the last ...
- 11:46 AM bug #8224 (Worksforme): Misleading initial language selection in TranslationWizard
- This is fixed in the meanwhile, no language and no text is selected in the right part of the translation wizard
08/17/2022
- 02:25 PM bug #10102 (Closed): Non-names formatted in italics
- Walter reviewed the export, sowe can close this ticket.
08/16/2022
- 03:06 PM bug #10114: Problem with parser for author string with whitespace between initials
- This exception also appears when trying to update sortindex in caryo_amaranthaceae.
08/12/2022
- 12:27 PM feature request #10062: Migrate TaxEditor word documentation to markdown
- Created all md files for Editor documentation.
- 12:27 PM bug #10114: Problem with parser for author string with whitespace between initials
- The exception appears while session.flush() before starting search for matching persons in CdmGenericDaoImpl (line 638)
- 09:39 AM bug #10114 (Closed): Problem with parser for author string with whitespace between initials
- mail ERS:
irgendetwas stimmt mit dem Parser nicht.
Ich bekomme diese Fehlermeldung, wenn ich lediglich eine Ini...
08/11/2022
- 01:13 PM bug #10108 (In Progress): Description for MediaSpecimen not shown even if it exists (i18n)
- 01:10 PM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
- I would add the description not only a warning if a description exist.
Maybe we can make it collapsable, then it is ... - 12:06 PM bug #9007 (Closed): Enable i18n support for media description UI
- The ticket can be closed because now the language text is get by "getPreferedLanguageText"
08/10/2022
- 02:39 PM bug #10102: Non-names formatted in italics
- This should be fixed, send an example to Walter for review.
- 02:39 PM bug #10102 (Resolved): Non-names formatted in italics
- Applied in changeset commit:cdmlib|241046afcdfe91c97acf02d438b5c4e0f57e3c4d.
- 02:13 PM bug #10113: Exception when opening map in details view for linux
- Katja Luther wrote in #note-1:
> mail KL:
>
> ich habe mal ein bisschen recherchiert und es scheint an einer fehl... - 02:12 PM bug #10113: Exception when opening map in details view for linux
- mail KL:
ich habe mal ein bisschen recherchiert und es scheint an einer fehlenden library zu liegen, könntest Du e... - 02:08 PM bug #10113 (New): Exception when opening map in details view for linux
- mail NK:
nur in der Linux Version des TaxEditor bekomme ich nachfolgende Fehlermeldung, wenn ich in den Faktendate... - 02:06 PM bug #10112 (New): Add a delay for the search in search dialogs
- mail WB:
kann man im Auswahldialog Referenzen irgendwie eine * Eingabe am Anfang abfangen, sodass nicht gleich all... - 01:29 PM bug #10111: Data loss e.g. when entering type information
- Sometimes the dirty flag is not set when changing the status and I think that I had a case where the specimen was rem...
- 09:09 AM bug #8764 (Worksforme): moving subtree results in NPE
- This should be fixed because the sortindex problem is fixed.
08/04/2022
- 08:37 AM bug #10007 (Resolved): fix reindex jobs on jobber
- Andreas Müller wrote in #note-11:
> upgrading some plugins lead to a cycle in dependencies which disabled many plugi... - 08:34 AM bug #10007 (Feedback): fix reindex jobs on jobber
- upgrading some plugins lead to a cycle in dependencies which disabled many plugins. The main reason seems to be
~...
08/02/2022
- 11:57 PM task #10072: Upgrade fully to log4j2
- Also we may want to handle jboss logging via jsl4j, this is not yet added.
- 11:48 PM task #10072: Upgrade fully to log4j2
- Maybe this helps: https://stackoverflow.com/questions/30045873/log4j2-api-cannot-find-log4j2-core-in-osgi-environment
- 11:48 PM task #10072: Upgrade fully to log4j2
- Andreas Müller wrote in #note-15:
> There is still an issue with log4j-slf4j-impl in TaxEditor. For some reason it i... - 11:19 PM task #10009: Cleanup dependencies in TaxEditor
- Andreas Müller wrote in #note-7:
> Seems to work but still needs intensive testing and maybe some cleanup.
Cleanu... - 10:55 PM task #10009: Cleanup dependencies in TaxEditor
- Andreas Müller wrote in #note-10:
> For the following dependencies it is unclear if they are needed. They are marked... - 03:43 PM task #10009: Cleanup dependencies in TaxEditor
- Testing needs to be done in the "with java" verson.
- 03:43 PM task #10009: Cleanup dependencies in TaxEditor
- For the following dependencies it is unclear if they are needed. They are marked as "Only added for correct package e...
- 10:26 PM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- Please review and check if there is any remaining issue not mentioned in followup ticket #10104.
Close afterwards. - 04:54 PM task #9975: Create new UML diagramms for the CDM
- UPDATE:
three tools were reconsidered:
| |UML_Designer(alignt center) |Papyrus(align cente... - 04:38 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
- Mail sent to datamanager to adapt their data (list of effected DBs see #note-5).
Katja, could you please check if ... - 03:30 PM feature request #10087: Add taxon node source to status notes in cdmlight
- Sent mail to WGB for final testing.
Katja, could you please review? - 03:27 PM bug #10089: Order TypeDesignationSetContainer by status type
- Only implemented for cdmlight. Data portal does not use the TypeDesignationSetContainer yet.
- 03:22 PM bug #10089: Order TypeDesignationSetContainer by status type
- Asked WGB for testing (2022-08-02).
Katja, can you please review? - 02:19 PM bug #10078 (Feedback): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
- Bug is fixed. Notification sent to data managers.
Katja, can you still clean up the code a bit and then close the ... - 01:46 PM bug #10078: Symbol and details view title of misapplied name type is not the same as shown in the type combo element
- Instances with Non-default-MAN:
Nepenthaceae: 1 partial, ~10 pp => Mail sent to WGB
Caryo_spp: 1 partial => Mail se... - 01:45 PM bug #10078: Symbol and details view title of misapplied name type is not the same as shown in the type combo element
- Non-default MAN:
~~~
SELECT tr.id relId, dtb.titleCache relType, tb1.titleCache MAN, tb2.titleCache accTaxon
FROM De...
07/30/2022
- 11:12 PM feature request #10082 (Closed): Improve formatting for pro parte misapplications
- I checked on https://www.europlusmed.org/cdm_dataportal/taxon/63fead7a-662a-4082-9503-c6ea994c2049 and it looks fine.
- 12:22 AM feature request #10082 (Resolved): Improve formatting for pro parte misapplications
- Now it works in the dataportal, too:
Katja, can you please review. - 10:51 PM bug #10007 (Resolved): fix reindex jobs on jobber
- This is more or less done. Maybe still need to do some cleanup.
- 09:49 PM bug #9979: Flora Greece shows large images
- Andreas Müller wrote in #note-11:
> The method findRepresentations($media) uses strict=true for thumbnail retrieval... - 07:49 PM bug #9979 (In Progress): Flora Greece shows large images
- 06:53 PM bug #9979: Flora Greece shows large images
- The method findRepresentations($media) uses strict=true for thumbnail retrieval. This is dangerous, because in this ...
- 06:46 PM bug #9979: Flora Greece shows large images
- The service which is called by the portal page https://api.cybertaxonomy.org/flora-greece/portal/taxon/8e75f1a8-e7f9-...
- 08:27 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
- If this is fixed already please add it to the release notes https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/Rele...
- 07:54 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
- Before fully closing also check #5655
- 04:20 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
- Dataportal and cdmlight updated commit:cdm-dataportal|bf522fd0e17 and commit:f951f09989936db85
I created a temporary... - 05:13 PM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- Andreas Müller wrote in #note-36:
> Should be resolved. All open issues moved to #10104.
>
> Still need to check ... - 04:19 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- I added "is non" to dataportal output commit:cdm-dataportal|bf522fd0e17. Can you please check for cdmlight and close ...
- 02:08 PM bug #10111 (In Progress): Data loss e.g. when entering type information
- 02:08 PM bug #10111: Data loss e.g. when entering type information
- AM:
Hallo Walter,
ich habe mir das jetzt mal angesehen, konnte es erst nicht, dann ein paar Mal quasi direkt hi... - 12:31 AM bug #10111: Data loss e.g. when entering type information
- That the "Source" element is not shown (last mail from WGB) is a known issue handled at #10080
- 12:30 AM bug #10111 (Resolved): Data loss e.g. when entering type information
- Sometimes type information gets lost when entered without immediate saving in type designation element
WGB:
mir... - 12:09 AM feature request #10110: Show barcode also on PreservedSpecimen General details element not only on specific element
- Please review.
- 12:05 AM feature request #10110 (Resolved): Show barcode also on PreservedSpecimen General details element not only on specific element
- Applied in changeset commit:taxeditor|bbebd47509e2bf94b059147209e53209836558b6.
07/29/2022
- 11:51 PM feature request #10110 (Closed): Show barcode also on PreservedSpecimen General details element not only on specific element
- WGB:
in diesem Formular ist der barcode erst auf der letzten Seite zu finden; im Bulk Editor und bei der EIngabe v... - 10:39 PM feature request #10082: Improve formatting for pro parte misapplications
- In dataportal it does not work yet as symbol is always rendered to "left" and "block", not "inline". I try new tagtyp...
- 09:29 PM feature request #10082: Improve formatting for pro parte misapplications
- In TaxEditor it works
- 08:15 PM feature request #10082 (In Progress): Improve formatting for pro parte misapplications
- implemented in formatter, still need to check how this looks like on a taxon page
- 08:53 PM bug #10084 (Resolved): Adding a new specimen to character matrix fails
- It looked to me as you did not yet revert, so I tried to do this by commit:78d9e692 . Please review. I already checke...
- 08:49 PM task #10109 (New): Investigate best practice for HQL with enumset
- Sine #7957 we use EnumSets as types. Hibernate mapping is implemented in EnumSetUserType class. The open issue here i...
- 07:13 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- Has this been reported by a user? If yes please add as watcher.
- 07:13 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- I got an NPE when changing to no status:
~~~
last remote method : https://test.e-taxonomy.eu:443/cdmserver/rem_co... - 07:07 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- To me it happens also after changing to other designation status therefore I adapted the title.
The workarounds se... - 06:26 PM bug #10078 (Resolved): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
- I give this to me for updating data after the release. Give back to KL for cleanup and close afterwards.
- 06:21 PM bug #9007 (Resolved): Enable i18n support for media description UI
- I guess this is solved and can be closed? Remaining issues copied to new tickets. Please move back to original milest...
- 06:19 PM bug #10108 (Closed): Description for MediaSpecimen not shown even if it exists (i18n)
- copied from #9007#note-11
* the description is not available at all (but there might be data if the media reused a... - 06:16 PM bug #10107: i18n bug when editing media not having a default language title
- priority needs to be discussed
- 06:15 PM bug #10107 (Closed): i18n bug when editing media not having a default language title
- copied from #9007#note-11
i18n editing of the title is not available here, and to me it looks like when editing t... - 06:05 PM feature request #8777: Make visiblity of CDM Source configurable
- Query to find example:
~~~
SELECT *
FROM OriginalSourceBase osb INNER JOIN DescriptionElementBase deb ON deb.id ... - 03:38 PM feature request #8777 (Resolved): Make visiblity of CDM Source configurable
- Andreas Müller wrote in #note-5:
> Andreas Müller wrote:
> > ... hmm, maybe an even better solution is to show the ... - 05:47 PM bug #10101: Correct mapping and handling of sorted tree structures
- Finding duplicates:
~~~
SELECT pkn.key_id, pkn.parent_id, pkn.sortindex, COUNT(*) AS n
FROM PolytomousKeyNode pkn
GR... - 02:15 PM bug #10101: Correct mapping and handling of sorted tree structures
- Comment from onMerge in PostMergeEntityListener:
~~~
Added in context of working on #10101, it was unclear to me... - 02:05 PM bug #10101: Correct mapping and handling of sorted tree structures
- I removed the HHH_9751_Util class as it is currently not used anymore, please recreate from commit:cb923587ce746 and ...
- 01:36 PM bug #10101 (In Progress): Correct mapping and handling of sorted tree structures
- I added tests for mergeDetached and saveDetached on nodes and trees and with removal and move of nodes to PolytomousK...
- 03:29 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
- Please still remove the whitespace (see #note-13 and review the cdmlight implementation). Then we can close the ticket.
- 03:26 PM bug #10034 (Closed): Flat feature tree throws exception
- 03:26 PM bug #10034: Flat feature tree throws exception
- Moved open issues to #10053 and close this ticket.
- 03:25 PM bug #10106 (New): Open issues from feature tree editing
- copied from #10034#note-7
However, the labeling of the tree still behaves strange sometimes. If you add a child th... - 03:09 PM task #10072: Upgrade fully to log4j2
- I also had problems installing the correct logging when running cdmlib test in IDE (here tests in cdmlib-services). T...
- 03:08 PM task #10072: Upgrade fully to log4j2
- TaxEditor issue moved to new ticket #10105.
- 03:07 PM bug #10105 (New): Fix logging in TaxEditor after migration to log4j 2
- for details see #10072#note-15
There are error message when starting the editor. Also in tests.
log4j-slf4j-im... - 03:03 PM bug #10033 (Feedback): For new FeatureTree only uuid is shown in dataportal
- Are there still open issues?
- 02:57 PM bug #10071 (Feedback): TaxonNodeDtos should be created directly not from taxon objects
- Is this fixed?
- 02:36 PM task #10067 (Resolved): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- Should be resolved. All open issues moved to #10104.
Still need to check the
~~~
TypedQuery<String[]>
~~~
issue. - 02:34 PM task #10104 (New): Cleanup after hibernate v5.4.33 migration
- for details see #10067 . Some cleanup is still needed.
Open issues are:
* Check for Queries with TypeQuery<Stri... - 02:06 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
- I removed the HHH_9751_Util class as it is currently not used anymore, please recreate from commit:cb923587ce746 and ...
- 12:54 PM task #8127 (Discussed): [Reminder] to check if Hibernate Null Value bug still exists
- The PolytoumsKey loading issue seems to be solved in TaxEditor by fixes done for #10101. However, the tests created f...
- 12:34 PM feature request #10103 (New): Add "Included" as default status to taxon node status
- Needs update script for existing data.
For details see #10096 - 12:32 PM feature request #10096: Add new TaxonNode status and make notes field more general
- AM:
ich habe das jetzt mal implementiert. Es sollte im nächsten Release (vermutlich noch diese Woche) drin sein.
... - 11:09 AM bug #10102 (Closed): Non-names formatted in italics
- WGB:
mir ist eben dann auch aufgefallen, dass die „non“-Namen nicht kursiv formatiert werden:
− <i>Achyranthes<...
07/28/2022
- 05:33 PM bug #10101: Correct mapping and handling of sorted tree structures
- Code comment from PostMergeEntityListener.java:
~~~
// #10101 the following code tried to handle orphanRemoval for ... - 09:25 AM bug #10101 (In Progress): Correct mapping and handling of sorted tree structures
- We currently have 3 sorted tree structures in the CDM: Classifications, TermTrees and PolytomousKeys.
The correct ...
07/27/2022
- 10:09 AM task #8127 (Feedback): [Reminder] to check if Hibernate Null Value bug still exists
- Issue is not yet solved. There are still issues when merging/loading PolytomousKeyNodes, see #3722#note-14 and follow...
- 09:13 AM task #3722 (Closed): Using @OrderColumn does not work in trees
- This ticket is more about @OrderColumn generally does not work which is not the case. The remaining issue is a NULL-V...
- 01:48 AM feature request #10082 (Discussed): Improve formatting for pro parte misapplications
07/26/2022
- 10:45 PM feature request #10057 (Resolved): Add "accessed" field to OriginalSourceBase
- This is implemented now in model and first implementations for OriginalSourceFormatter and TaxonBaseDefaultCacheStrat...
- 04:21 PM feature request #10096: Add new TaxonNode status and make notes field more general
- @Katja: can you please also have a look why there are 3 messages.properties that seem to hold the same values (in tax...
- 04:18 PM feature request #10096 (Resolved): Add new TaxonNode status and make notes field more general
- This should be fixed now. Katja, can you please review when back.
Please also have a look to the changes in TaxEdi... - 12:57 PM feature request #10096 (In Progress): Add new TaxonNode status and make notes field more general
- Status added and cdmlight adapted. Still need to test in taxeditor and dataportal.
- 11:05 AM feature request #10096: Add new TaxonNode status and make notes field more general
- WGB:
ich habe eine Diskussion aus dem Mai 2020 wieder aufgegriffen, da ich dringend eine Erweiterung des Placement... - 10:58 AM feature request #10096: Add new TaxonNode status and make notes field more general
- For details see attachement.
- 03:44 PM task #10100 (New): Rename statusNote into placementNote in TaxonNode
- ... for details see #10096
This is the model change ticket only. - 10:16 AM task #10099 (New): Try to use log4j instead of logback in CDM server
- To avoid another framework on the classpath. Maybe this is possible now with log4j 2.
See eu.etaxonomy.cdm.server.... - 10:10 AM task #10072: Upgrade fully to log4j2
- There is still an issue with log4j-slf4j-impl in TaxEditor. For some reason it is not recognized as existing library ...
07/25/2022
- 06:36 PM task #10009: Cleanup dependencies in TaxEditor
- The following dependencies were used in prior version but are currently not on the classpath:
~~~
lib/aspectjr... - 04:48 PM task #9975: Create new UML diagramms for the CDM
- java->uml generation is documented at: https://www.umldesigner.org/ref-doc/umlgen.html (Java to UML)
- 04:45 PM task #9975 (Discussed): Create new UML diagramms for the CDM
- There is a new repository for all platform UML documentation at ssh://git@dev.e-taxonomy.eu/var/git/platform.git .
...
07/23/2022
- 12:49 AM bug #9785 (Closed): Update script for missing measurment unit_ids (matrix)
- I guess this worked. If we still find a database with non-updated data we should update manually.
- 12:43 AM feature request #9906: Implement credits in dataportal
- Model was adapte. Now we can implement in dataportal. Maybe we can do this during the performance sprint.
- 12:41 AM feature request #9908 (Closed): Add timeperiod to credits
- Implemented. Now we still need implementation in TaxEditor (#10098) and dataportal (#9906)
- 12:39 AM feature request #10098 (Closed): Implement timePeriod for Credit in TaxEditor
- see #9908 and #9906 for details
- 12:37 AM feature request #10097 (Closed): Rename originalNameString to originalInfo
- I guess this worked
- 12:33 AM bug #9901 (Closed): Remove unique key Media_RightsInfo.rights_id
- I guess this worked. I did not find any db with a uk-index only fk.
- 12:27 AM bug #9830 (Closed): México Distrito Federal needs accent
- Tested on integration_palmae
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