Activity
From 07/23/2022 to 08/21/2022
08/19/2022
- 01:59 PM Revision 349f2c7c (taxeditor): ref #10080: always remove not_designated checkbox and create new
- 12:53 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- Andreas Müller wrote in #note-5:
> Has this been reported by a user? If yes please add as watcher.
I can not reme... - 12:52 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- Andreas Müller wrote in #note-4:
> I got an NPE when changing to no status:
>
> ~~~
> last remote method : https... - 12:43 PM feature request #10098: Implement timePeriod for Credit in TaxEditor
- Timeperiod is implemented, please review.
- 12:42 PM feature request #10098 (Resolved): Implement timePeriod for Credit in TaxEditor
- Applied in changeset commit:taxeditor|35c569e4b0ff1545d0d3a37d8736b4b70334441e.
- 12:42 PM Revision 35c569e4 (taxeditor): fix #10098: add timeperiod to creditelement
- 12:35 PM Revision ce3cc213 (taxeditor): fix bug with list of last references
- 11:50 AM feature request #10081 (Closed): Show name in source for sec ref of accepted taxon
- The whitespace is removed, so I close this ticket
- 11:47 AM Revision fe8ca5d8 (cdm-dataportal): ref #10081: add secNameInSourceSeparator to separator list
08/18/2022
- 12:43 PM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
- Adding the description is implemented now, we should discuss whether it should be collapsable.
- 12:38 PM bug #10107 (Resolved): i18n bug when editing media not having a default language title
- This should be fixed,please review
- 12:37 PM Revision bff0ad69 (taxeditor): ref #10107, #6228: fix default language handling
- 11:53 AM Revision 32071906 (taxeditor): ref #10107, #6228: add remove button to MultiLanguageTextElement and fix default text
- 11:51 AM bug #6228 (In Progress): Fix behavior of multi-language editing
- 11:51 AM bug #6228: Fix behavior of multi-language editing
- The issue that only two languages are saved is solved in the meanwhile, the missing deletion was added with the last ...
- 11:46 AM bug #8224 (Worksforme): Misleading initial language selection in TranslationWizard
- This is fixed in the meanwhile, no language and no text is selected in the right part of the translation wizard
08/17/2022
- 02:25 PM bug #10102 (Closed): Non-names formatted in italics
- Walter reviewed the export, sowe can close this ticket.
08/16/2022
- 03:06 PM bug #10114: Problem with parser for author string with whitespace between initials
- This exception also appears when trying to update sortindex in caryo_amaranthaceae.
08/12/2022
- 01:38 PM Revision 55e5323a (taxeditor): ref #10108: with new implementation createTitle is not necessary and wrong
- 12:27 PM feature request #10062: Migrate TaxEditor word documentation to markdown
- Created all md files for Editor documentation.
- 12:27 PM bug #10114: Problem with parser for author string with whitespace between initials
- The exception appears while session.flush() before starting search for matching persons in CdmGenericDaoImpl (line 638)
- 09:39 AM bug #10114 (Closed): Problem with parser for author string with whitespace between initials
- mail ERS:
irgendetwas stimmt mit dem Parser nicht.
Ich bekomme diese Fehlermeldung, wenn ich lediglich eine Ini...
08/11/2022
- 01:13 PM bug #10108 (In Progress): Description for MediaSpecimen not shown even if it exists (i18n)
- 01:10 PM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
- I would add the description not only a warning if a description exist.
Maybe we can make it collapsable, then it is ... - 01:12 PM Revision 5dec995b (taxeditor): ref #10108: add description field and handling i18n text like in media element
- 01:11 PM Revision 2fac67f3 (taxeditor): in multiLanguageText use preferredLanguage also for refresh
- 12:06 PM bug #9007 (Closed): Enable i18n support for media description UI
- The ticket can be closed because now the language text is get by "getPreferedLanguageText"
- 09:39 AM Revision cafa2d8c (cdm-dataportal): revert test
- 09:37 AM Revision 90ddfcaa (cdm-dataportal): fix compile error
- 09:23 AM Revision 436e6bdf (cdm-dataportal): ref #10081: remove whitespace in front of separator
08/10/2022
- 04:07 PM Revision b403a6b1 (cdm-dataportal): ref #10081: add test for secundum name in source
- 02:39 PM bug #10102: Non-names formatted in italics
- This should be fixed, send an example to Walter for review.
- 02:39 PM bug #10102 (Resolved): Non-names formatted in italics
- Applied in changeset commit:cdmlib|241046afcdfe91c97acf02d438b5c4e0f57e3c4d.
- 02:39 PM Revision 241046af (cdmlib): fix #10102: non names should be in italics
- 02:13 PM bug #10113: Exception when opening map in details view for linux
- Katja Luther wrote in #note-1:
> mail KL:
>
> ich habe mal ein bisschen recherchiert und es scheint an einer fehl... - 02:12 PM bug #10113: Exception when opening map in details view for linux
- mail KL:
ich habe mal ein bisschen recherchiert und es scheint an einer fehlenden library zu liegen, könntest Du e... - 02:08 PM bug #10113 (New): Exception when opening map in details view for linux
- mail NK:
nur in der Linux Version des TaxEditor bekomme ich nachfolgende Fehlermeldung, wenn ich in den Faktendate... - 02:06 PM bug #10112 (New): Add a delay for the search in search dialogs
- mail WB:
kann man im Auswahldialog Referenzen irgendwie eine * Eingabe am Anfang abfangen, sodass nicht gleich all... - 01:29 PM bug #10111: Data loss e.g. when entering type information
- Sometimes the dirty flag is not set when changing the status and I think that I had a case where the specimen was rem...
- 09:09 AM bug #8764 (Worksforme): moving subtree results in NPE
- This should be fixed because the sortindex problem is fixed.
08/04/2022
- 08:37 AM bug #10007 (Resolved): fix reindex jobs on jobber
- Andreas Müller wrote in #note-11:
> upgrading some plugins lead to a cycle in dependencies which disabled many plugi... - 08:34 AM bug #10007 (Feedback): fix reindex jobs on jobber
- upgrading some plugins lead to a cycle in dependencies which disabled many plugins. The main reason seems to be
~...
08/02/2022
- 11:57 PM task #10072: Upgrade fully to log4j2
- Also we may want to handle jboss logging via jsl4j, this is not yet added.
- 11:48 PM task #10072: Upgrade fully to log4j2
- Maybe this helps: https://stackoverflow.com/questions/30045873/log4j2-api-cannot-find-log4j2-core-in-osgi-environment
- 11:48 PM task #10072: Upgrade fully to log4j2
- Andreas Müller wrote in #note-15:
> There is still an issue with log4j-slf4j-impl in TaxEditor. For some reason it i... - 11:19 PM task #10009: Cleanup dependencies in TaxEditor
- Andreas Müller wrote in #note-7:
> Seems to work but still needs intensive testing and maybe some cleanup.
Cleanu... - 10:55 PM task #10009: Cleanup dependencies in TaxEditor
- Andreas Müller wrote in #note-10:
> For the following dependencies it is unclear if they are needed. They are marked... - 03:43 PM task #10009: Cleanup dependencies in TaxEditor
- Testing needs to be done in the "with java" verson.
- 03:43 PM task #10009: Cleanup dependencies in TaxEditor
- For the following dependencies it is unclear if they are needed. They are marked as "Only added for correct package e...
- 10:50 PM Revision 4066bda3 (taxeditor): ref #10009 fully delete jcl-over-slf4j and log4j-slf4j-impl from git repo
- 10:49 PM Revision 09e461a6 (taxeditor): cleanup
- 10:45 PM Revision 670685c3 (taxeditor): ref #10009 re-add imaging to build.properties
- 10:26 PM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- Please review and check if there is any remaining issue not mentioned in followup ticket #10104.
Close afterwards. - 10:17 PM Revision 091d1413 (taxeditor): ref #10009 try to remove spring-security-config
- 10:13 PM Revision 224f68c5 (taxeditor): ref #10009 try to remove spring-orm
- 10:09 PM Revision 42df8aed (taxeditor): ref #10009 try to remove spring-context-support
- 10:06 PM Revision 6c63036b (taxeditor): ref #10009 try to remove json-lib-2.4-jdk15
- 10:00 PM Revision 2988a396 (taxeditor): ref #10009 try to remove hibernate-commons-annotations (cont.)
- 09:59 PM Revision 8de239c1 (taxeditor): ref #10009 try to remove hibernate-search (cont.)
- 09:59 PM Revision 8e45e5fb (taxeditor): ref #10009 try to remove hibernate-search
- 09:50 PM Revision aed150fb (taxeditor): Revert "ref #10009 try to remove commons-imaging" (cont.)
- 09:39 PM Revision caf6fb19 (taxeditor): Revert "ref #10009 try to remove commons-imaging"
- This reverts commit 2656c76547245cbe1b8abb2ddf597c5c95e16d95.
- 09:32 PM Revision fde5fee1 (taxeditor): ref #10009 try to remove hibernate-commons-annotations
- 09:23 PM Revision 289bddaa (taxeditor): ref #10009 try to remove xercesImpl
- 09:17 PM Revision 2656c765 (taxeditor): ref #10009 try to remove commons-imaging (cont.)
- 09:16 PM Revision da85ff94 (taxeditor): ref #10009 try to remove commons-imaging
- 08:52 PM Revision 92ecc4db (taxeditor): remove duplicated commons-collections4 entry
- 08:51 PM Revision 1b54fed6 (taxeditor): ref #10009 fully remove commons-collections dependeny
- 08:28 PM Revision e941d346 (cdmlib): ref #10009 replace CircularFifoBuffer by ArrayBlockingQueue to avoid commons-collections
- 08:14 PM Revision 6779d238 (taxeditor): ref #10009 re-add log4j-slf4j-impl and jcl-over-slf4j to gitignore
- 08:11 PM Revision 544ca435 (taxeditor): ref #10009 add spring-jdbc for running tests (cont.)
- 08:05 PM Revision 16fa9188 (taxeditor): ref #10009 add spring-jdbc for running tests
- 07:31 PM Revision dbc272fa (taxeditor): ref #10009 fix classpath entry for jcl-over-slf4j (cont.)
- 07:18 PM Revision f875753d (taxeditor): ref #10009 fix classpath entry for jcl-over-slf4j
- 06:05 PM Revision 3075786e (taxeditor): ref #10009 add jcl-over-slf4j and log4j-slf4j-impl as non-ignored libraries
- 05:42 PM Revision fae1500b (taxeditor): cleanup
- 05:40 PM Revision fe77d8d4 (taxeditor): ref #10009 add commons-maths again as it is required by editor
- 04:54 PM task #9975: Create new UML diagramms for the CDM
- UPDATE:
three tools were reconsidered:
| |UML_Designer(alignt center) |Papyrus(align cente... - 04:38 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
- Mail sent to datamanager to adapt their data (list of effected DBs see #note-5).
Katja, could you please check if ... - 03:52 PM Revision bf76e3f5 (taxeditor): ref #10009 remove invalid line in build.properties
- 03:40 PM Revision 81bc5519 (taxeditor): ref #10009 remove maybe unused dependecies in build.properties
- 03:39 PM Revision 1d6dedc4 (taxeditor): ref #10009 put maybe unused dependecies to the end in build.properties
- 03:30 PM feature request #10087: Add taxon node source to status notes in cdmlight
- Sent mail to WGB for final testing.
Katja, could you please review? - 03:27 PM bug #10089: Order TypeDesignationSetContainer by status type
- Only implemented for cdmlight. Data portal does not use the TypeDesignationSetContainer yet.
- 03:22 PM bug #10089: Order TypeDesignationSetContainer by status type
- Asked WGB for testing (2022-08-02).
Katja, can you please review? - 02:59 PM Revision 8923a5b4 (taxeditor): ref #10009 check if the "Only added for correct package export" dependencies are realy needed (including commons-math3)
- 02:42 PM Revision f2f77749 (taxeditor): javadoc
- 02:19 PM bug #10078 (Feedback): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
- Bug is fixed. Notification sent to data managers.
Katja, can you still clean up the code a bit and then close the ... - 01:46 PM bug #10078: Symbol and details view title of misapplied name type is not the same as shown in the type combo element
- Instances with Non-default-MAN:
Nepenthaceae: 1 partial, ~10 pp => Mail sent to WGB
Caryo_spp: 1 partial => Mail se... - 01:45 PM bug #10078: Symbol and details view title of misapplied name type is not the same as shown in the type combo element
- Non-default MAN:
~~~
SELECT tr.id relId, dtb.titleCache relType, tb1.titleCache MAN, tb2.titleCache accTaxon
FROM De...
07/30/2022
- 11:12 PM feature request #10082 (Closed): Improve formatting for pro parte misapplications
- I checked on https://www.europlusmed.org/cdm_dataportal/taxon/63fead7a-662a-4082-9503-c6ea994c2049 and it looks fine.
- 12:22 AM feature request #10082 (Resolved): Improve formatting for pro parte misapplications
- Now it works in the dataportal, too:
![](clipboard-202207300021-sgo4r.png)
Katja, can you please review. - 10:51 PM bug #10007 (Resolved): fix reindex jobs on jobber
- This is more or less done. Maybe still need to do some cleanup.
- 09:49 PM bug #9979: Flora Greece shows large images
- Andreas Müller wrote in #note-11:
> The method findRepresentations($media) uses strict=true for thumbnail retrieval... - 07:49 PM bug #9979 (In Progress): Flora Greece shows large images
- 06:53 PM bug #9979: Flora Greece shows large images
- The method findRepresentations($media) uses strict=true for thumbnail retrieval. This is dangerous, because in this ...
- 06:46 PM bug #9979: Flora Greece shows large images
- The service which is called by the portal page https://api.cybertaxonomy.org/flora-greece/portal/taxon/8e75f1a8-e7f9-...
- 09:09 PM Revision 90bd882f (cdm-server): Merge branch 'release/5.32.0' into develop
- 09:09 PM Revision 4acfd0c1 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 09:08 PM Revision 203aade6 (cdm-server): updating poms for branch'release/5.32.0' with non-snapshot versions
- 09:06 PM Revision 093822c6 (cdm-webapp): Merge branch 'release/5.32.0' into develop
- 09:06 PM Revision 38074bbf (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 09:05 PM Revision 3df7d64e (cdm-webapp): updating poms for branch'release/5.32.0' with non-snapshot versions
- 09:05 PM Revision 66be2647 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.32.0
- 08:59 PM Revision 086ca01c (cdm-vaadin): Merge branch 'release/5.32.0' into develop
- 08:59 PM Revision 7bed910a (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 08:56 PM Revision cebafd76 (cdm-vaadin): updating poms for branch'release/5.32.0' with non-snapshot versions
- 08:56 PM Revision 97775d78 (cdm-vaadin): jenkins bumping cdmlib.version to 5.32.0
- 08:56 PM Revision d73c0ce8 (cdm-dataportal): Merge branch 'release/5.32.0' into develop
- 08:56 PM Revision 7b01bcab (cdm-dataportal): updating poms for branch'release/5.32.0' with non-snapshot versions
- 08:55 PM Revision c369cd09 (cdm-dataportal): release-preparation: production level css
- 08:55 PM Revision f28c4ae0 (taxeditor): Merge branch 'release/5.32.0' into develop
- 08:55 PM Revision 2c78f50b (taxeditor): Merge branch 'release/5.32.0'
- 08:50 PM Revision 6168faeb (cdmlib): Updating develop poms back to pre merge state
- 08:50 PM Revision 47168d98 (cdmlib): Merge branch 'master' into develop
- 08:50 PM Revision 659f4aae (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 08:50 PM Revision 970ba886 (cdmlib): Merge branch 'release/5.32.0'
- 08:33 PM Revision 24196586 (cdmlib): updating poms for branch'release/5.32.0' with non-snapshot versions
- 08:28 PM Revision 29925b4c (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.32.0-SNAPSHOT
- 08:28 PM Revision b7cfa781 (cdm-webapp): updating poms for 5.33.0-SNAPSHOT development
- 08:28 PM Revision 8ab15c36 (cdm-webapp): updating poms for 5.32.0 branch with snapshot versions
- 08:28 PM Revision 1885ffe3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.33.0-SNAPSHOT
- 08:27 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
- If this is fixed already please add it to the release notes https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/Rele...
- 08:27 PM Revision aa965bd8 (taxeditor): Updated version in pom / project files to taxeditor version : 5.33.0-SNAPSHOT and cdmlib version : 5.33.0-SNAPSHOT
- 08:27 PM Revision 6d39f34f (taxeditor): Updated version in pom / project files to taxeditor version : 5.32.0 and cdmlib version : 5.32.0
- 08:26 PM Revision 54241228 (cdm-vaadin): jenkins bumping cdmlib.version to 5.32.0-SNAPSHOT
- 08:26 PM Revision 7ba7b82c (cdm-vaadin): updating poms for 5.33.0-SNAPSHOT development
- 08:26 PM Revision b5243db3 (cdm-vaadin): updating poms for 5.32.0 branch with snapshot versions
- 08:26 PM Revision b3141578 (cdm-vaadin): jenkins bumping cdmlib.version to 5.33.0-SNAPSHOT
- 08:26 PM Revision b69aaf5b (cdm-dataportal): updating poms for 5.33.0-SNAPSHOT development
- 08:26 PM Revision 5fe24a67 (cdm-server): updating poms for 5.33.0-SNAPSHOT development
- 08:23 PM Revision f3f9d5f9 (cdmlib): updating poms for 5.33.0-SNAPSHOT development
- 08:23 PM Revision 72bf768e (cdmlib): updating poms for 5.32.0 branch with snapshot versions
- 07:54 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
- Before fully closing also check #5655
- 04:20 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
- Dataportal and cdmlight updated commit:cdm-dataportal|bf522fd0e17 and commit:f951f09989936db85
I created a temporary... - 07:10 PM Revision b11ee7b3 (taxeditor): adapt addGrandChildPolytomousKeyNode test but still ignored
- 07:10 PM Revision ed20c18b (taxeditor): reenable readAllPolytomousKeys test
- 07:09 PM Revision c2b55770 (taxeditor): cleanup
- 06:59 PM Revision 6df5928c (cdmlib): cleanup
- 06:58 PM Revision 499e4576 (cdm-dataportal): ref #9979 remove strict size restriction for thumbnails
- 06:57 PM Revision 4a3a8785 (cdm-dataportal): cleanup
- 05:13 PM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- Andreas Müller wrote in #note-36:
> Should be resolved. All open issues moved to #10104.
>
> Still need to check ... - 05:05 PM Revision 4fccbc69 (cdmlib): ref #10067 make typed query an hibernate query
- 05:05 PM Revision edf29af6 (cdmlib): ref #10067 test if Query<Object[]> works
- 05:04 PM Revision 114cd073 (cdmlib): cleanup
- 04:32 PM Revision c1d1ac33 (cdm-vaadin): ref #10037 add logging to account registration
- 04:19 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- I added "is non" to dataportal output commit:cdm-dataportal|bf522fd0e17. Can you please check for cdmlight and close ...
- 03:35 PM Revision 05aa14e7 (cdm-dataportal): ref #10096 fix taxon node status label in dataportal test
- 03:31 PM Revision f951f099 (cdmlib): ref #10083 add avoids homonym of to nonRelNames in cdmlight
- 03:30 PM Revision 8c9ff01f (cdmlib): fix trim of nonRelNames
- 03:30 PM Revision 5f97d803 (cdmlib): cleanup
- 03:19 PM Revision bf522fd0 (cdm-dataportal): ref #10083 add "avoids homonym" and "is not" to dataportal settings
- 02:08 PM bug #10111 (In Progress): Data loss e.g. when entering type information
- 02:08 PM bug #10111: Data loss e.g. when entering type information
- AM:
Hallo Walter,
ich habe mir das jetzt mal angesehen, konnte es erst nicht, dann ein paar Mal quasi direkt hi... - 12:31 AM bug #10111: Data loss e.g. when entering type information
- That the "Source" element is not shown (last mail from WGB) is a known issue handled at #10080
- 12:30 AM bug #10111 (In Progress): Data loss e.g. when entering type information
- Sometimes type information gets lost when entered without immediate saving in type designation element
WGB:
mir... - 12:23 PM Revision d643a800 (taxeditor): fix NPE in InspectSessionsDialog
- 11:13 AM Revision 4a879017 (cdmlib): add PermissionClass for TextualTypeDesignation
- 11:13 AM Revision 7f5726f4 (cdmlib): move object name to beginning in CdmEntityInfo.label
- 11:12 AM Revision 1f8892fb (cdmlib): cleanup
- 10:49 AM Revision b12da30d (taxeditor): cleanup
- 10:32 AM Revision 7fefafde (taxeditor): sort entities by fieldname in InspectSessionsDialog
- 10:30 AM Revision fb74317f (cdmlib): move fieldName to beginning in CdmEntityInfo.label
- 08:58 AM Revision 95f83e6e (cdmlib): ref #10096 adapt cdmLight tests to use current TaxonNodeStatus.label
- 08:48 AM Revision b8fec484 (cdm-dataportal): ref #10096 adapt dataportal tests to use current TaxonNodeStatus.label
- 08:42 AM Revision ba55972b (cdmlib): ref #10096 add short label to TaxonNodeStatus
- 08:39 AM Revision 8a8db6f7 (cdmlib): ref #10096 use longer form for TaxonNodeStatus labels
- 01:27 AM Revision 9a7edb27 (cdm-dataportal): ref #10096 adapt some failing tests related to TaxonNodeStatus label and ordering (cont.)
- 01:12 AM Revision 2c16778b (cdm-dataportal): cleanup
- 01:12 AM Revision b7997734 (cdm-dataportal): ref #10096 adapt some failing tests related to TaxonNodeStatus label and ordering
- 12:09 AM feature request #10110: Show barcode also on PreservedSpecimen General details element not only on specific element
- Please review.
- 12:05 AM feature request #10110 (Resolved): Show barcode also on PreservedSpecimen General details element not only on specific element
- Applied in changeset commit:taxeditor|bbebd47509e2bf94b059147209e53209836558b6.
- 12:05 AM Revision bbebd475 (taxeditor): fix #10110 move barcode to general page
- 12:04 AM Revision bc54c30f (taxeditor): cleanup
07/29/2022
- 11:51 PM feature request #10110 (Closed): Show barcode also on PreservedSpecimen General details element not only on specific element
- WGB:
in diesem Formular ist der barcode erst auf der letzten Seite zu finden; im Bulk Editor und bei der EIngabe v... - 10:39 PM feature request #10082: Improve formatting for pro parte misapplications
- In dataportal it does not work yet as symbol is always rendered to "left" and "block", not "inline". I try new tagtyp...
- 09:29 PM feature request #10082: Improve formatting for pro parte misapplications
- In TaxEditor it works
- 08:15 PM feature request #10082 (In Progress): Improve formatting for pro parte misapplications
- implemented in formatter, still need to check how this looks like on a taxon page
- 10:35 PM Revision 8436c9db (cdmlib): use inlineSymbol not symbol for splitted symbol
- 10:35 PM Revision 0419bfc2 (cdmlib): cleanup
- 09:28 PM Revision c41902de (cdmlib): cleanup and javadoc
- 09:27 PM Revision a8eb51e8 (cdmlib): ref #10082 split MAN pro parte symbol in formatter (cont.)
- 09:00 PM Revision c5e7d4d0 (taxeditor): ref #10096 fix placement notes label in default messages
- 08:53 PM bug #10084 (Resolved): Adding a new specimen to character matrix fails
- It looked to me as you did not yet revert, so I tried to do this by commit:78d9e692 . Please review. I already checke...
- 08:49 PM task #10109 (New): Investigate best practice for HQL with enumset
- Sine #7957 we use EnumSets as types. Hibernate mapping is implemented in EnumSetUserType class. The open issue here i...
- 08:14 PM Revision 7d75bc7a (cdmlib): ref #10082 split MAN pro parte symbol in formatter
- 08:14 PM Revision ced7583b (cdmlib): cleanup
- 07:40 PM Revision 7fff6c03 (cdmlib): cleanup (rename reverse->inverse)
- 07:30 PM Revision ca31f2e6 (cdmlib): ref #10096 add correct UTF8 for status unresolved
- 07:29 PM Revision c22f14af (cdmlib): javadoc
- 07:13 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- Has this been reported by a user? If yes please add as watcher.
- 07:13 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- I got an NPE when changing to no status:
~~~
last remote method : https://test.e-taxonomy.eu:443/cdmserver/rem_co... - 07:07 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- To me it happens also after changing to other designation status therefore I adapted the title.
The workarounds se... - 07:03 PM Revision 16512021 (taxeditor): ref #10080 fix NPE when changing TypeDesignationStatus to NO_SELECTION
- 07:02 PM Revision 121b5aa2 (taxeditor): cleanup
- 06:26 PM bug #10078 (Resolved): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
- I give this to me for updating data after the release. Give back to KL for cleanup and close afterwards.
- 06:21 PM bug #9007 (Resolved): Enable i18n support for media description UI
- I guess this is solved and can be closed? Remaining issues copied to new tickets. Please move back to original milest...
- 06:19 PM bug #10108 (Closed): Description for MediaSpecimen not shown even if it exists (i18n)
- copied from #9007#note-11
* the description is not available at all (but there might be data if the media reused a... - 06:16 PM bug #10107: i18n bug when editing media not having a default language title
- priority needs to be discussed
- 06:15 PM bug #10107 (Closed): i18n bug when editing media not having a default language title
- copied from #9007#note-11
i18n editing of the title is not available here, and to me it looks like when editing t... - 06:05 PM feature request #8777: Make visiblity of CDM Source configurable
- Query to find example:
~~~
SELECT *
FROM OriginalSourceBase osb INNER JOIN DescriptionElementBase deb ON deb.id ... - 03:38 PM feature request #8777 (Resolved): Make visiblity of CDM Source configurable
- Andreas Müller wrote in #note-5:
> Andreas Müller wrote:
> > ... hmm, maybe an even better solution is to show the ... - 05:47 PM bug #10101: Correct mapping and handling of sorted tree structures
- Finding duplicates:
~~~
SELECT pkn.key_id, pkn.parent_id, pkn.sortindex, COUNT(*) AS n
FROM PolytomousKeyNode pkn
GR... - 02:15 PM bug #10101: Correct mapping and handling of sorted tree structures
- Comment from onMerge in PostMergeEntityListener:
~~~
Added in context of working on #10101, it was unclear to me... - 02:05 PM bug #10101: Correct mapping and handling of sorted tree structures
- I removed the HHH_9751_Util class as it is currently not used anymore, please recreate from commit:cb923587ce746 and ...
- 01:36 PM bug #10101 (In Progress): Correct mapping and handling of sorted tree structures
- I added tests for mergeDetached and saveDetached on nodes and trees and with removal and move of nodes to PolytomousK...
- 03:39 PM Revision 6f5e7139 (taxeditor): ref #8777 try to filter CDM Source in Original Sources if no data exist (it is read only)
- 03:33 PM Revision 6aef0d5d (taxeditor): remove deproxy
- 03:31 PM Revision 09abc656 (taxeditor): ref #10101 remove HHH_9751 from TaxEditor
- 03:29 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
- Please still remove the whitespace (see #note-13 and review the cdmlight implementation). Then we can close the ticket.
- 03:26 PM bug #10034 (Closed): Flat feature tree throws exception
- 03:26 PM bug #10034: Flat feature tree throws exception
- Moved open issues to #10053 and close this ticket.
- 03:25 PM bug #10106 (New): Open issues from feature tree editing
- copied from #10034#note-7
However, the labeling of the tree still behaves strange sometimes. If you add a child th... - 03:20 PM Revision caafa683 (taxeditor): ref #10096 use symbol for taxon node status, not ASCII
- 03:18 PM Revision f8bc707d (taxeditor): cleanup
- 03:09 PM task #10072: Upgrade fully to log4j2
- I also had problems installing the correct logging when running cdmlib test in IDE (here tests in cdmlib-services). T...
- 03:08 PM task #10072: Upgrade fully to log4j2
- TaxEditor issue moved to new ticket #10105.
- 03:07 PM bug #10105 (New): Fix logging in TaxEditor after migration to log4j 2
- for details see #10072#note-15
There are error message when starting the editor. Also in tests.
log4j-slf4j-im... - 03:03 PM bug #10033 (Feedback): For new FeatureTree only uuid is shown in dataportal
- Are there still open issues?
- 02:57 PM bug #10071 (Feedback): TaxonNodeDtos should be created directly not from taxon objects
- Is this fixed?
- 02:55 PM Revision 01d4b08d (cdmlib): fix TaxonNodeServiceImplTest.testSaveDetached
- 02:36 PM task #10067 (Resolved): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- Should be resolved. All open issues moved to #10104.
Still need to check the
~~~
TypedQuery<String[]>
~~~
issue. - 02:34 PM task #10104 (New): Cleanup after hibernate v5.4.33 migration
- for details see #10067 . Some cleanup is still needed.
Open issues are:
* Check for Queries with TypeQuery<Stri... - 02:17 PM Revision d80bd653 (cdmlib): ref #10067 adapt KeywordAnalyzer handling to v5.4.33 (only used for TaxonName.nameCache)
- 02:13 PM Revision 1aa6c88f (cdmlib): ref #10101 delegat onMerge(event) to onMerge(event, alreadyCopied) in PostMergeEntityListener
- 02:06 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
- I removed the HHH_9751_Util class as it is currently not used anymore, please recreate from commit:cb923587ce746 and ...
- 12:54 PM task #8127 (Discussed): [Reminder] to check if Hibernate Null Value bug still exists
- The PolytoumsKey loading issue seems to be solved in TaxEditor by fixes done for #10101. However, the tests created f...
- 02:04 PM Revision cb923587 (cdmlib): ref #10101, ref #8127, ref #3722, ref #5536 remove HHH_9751_Util class as it is not used anymore
- 02:01 PM Revision 500e20cf (cdmlib): cleanup
- 02:00 PM Revision e5477781 (cdmlib): ref #10101 removed cascade from TermNode.parent, not needed and probably also not correct
- 01:57 PM Revision 3ad25ffd (cdmlib): ref #10101 removed cascade from TermRelationBase.graph, not needed and probably also not correct
- 01:55 PM Revision 520f2d6d (cdmlib): ref #10101 add testSaveDetachedWithMove test to PolytomousKeyNodeServiceTest
- 01:54 PM Revision 78d9e692 (cdmlib): ref #10084 revert filtering by description type in query, needs further investigation
- 01:54 PM Revision 13b70d09 (cdmlib): ref #10084 adapt query to TypedQuery
- 01:53 PM Revision ecbb164c (cdmlib): cleanup
- 01:25 PM Revision 63e1c600 (cdmlib): ref #10101 add saveDetached tests to PolytomousKeyNodeServiceTest (and replace save by merge in other tests)
- 01:23 PM Revision d5e92c4b (cdmlib): ref #10101 add (partly ignored) tests to TaxonNodeServiceImplTest and TermNodeServiceImplTest
- 12:38 PM Revision 4e5b8da0 (cdmlib): ref #10096 adapt cdmlight test to longer taxon node status labels
- 12:34 PM feature request #10103 (New): Add "Included" as default status to taxon node status
- Needs update script for existing data.
For details see #10096 - 12:32 PM feature request #10096: Add new TaxonNode status and make notes field more general
- AM:
ich habe das jetzt mal implementiert. Es sollte im nächsten Release (vermutlich noch diese Woche) drin sein.
... - 12:08 PM Revision 378498f3 (cdmlib): ref #10096 add long labels to TaxonNodeStatus and add commented default status
- 11:09 AM bug #10102 (Closed): Non-names formatted in italics
- WGB:
mir ist eben dann auch aufgefallen, dass die „non“-Namen nicht kursiv formatiert werden:
− <i>Achyranthes<... - 01:04 AM Revision b45cb977 (cdmlib): cleanup
07/28/2022
- 10:13 PM Revision 4efb0c4a (cdmlib): ref #10101 catch and log no-session exception in PostMergeEntityListener instead of removing initialization completely
- 09:34 PM Revision ccd3aaab (cdmlib): ref #10101 again preliminary remove children initialization in PostMergeEntityListener
- 08:59 PM Revision 4263e86b (cdmlib): return false in finally again, just in case this is important
- 08:36 PM Revision 031c8642 (cdmlib): ref #10101 add the childNodes touche for TaxonNode and TermNode again in PostMergeEntityListener
- 08:02 PM Revision 9f707aab (cdmlib): ref #10101 preliminary remove children initialization in PostMergeEntityListener
- 07:27 PM Revision 96326c59 (cdmlib): ref #10101 adapt PolytomousKeyNodeServiceTest to new orphaned delete method in services
- 07:20 PM Revision 472c6b76 (cdmlib): cleanup and allow merge with objectsToRemove in all services
- 06:24 PM Revision 2c08ec06 (cdmlib): ref #10101 add sortindex fix to taxon node and term node, too
- 06:23 PM Revision 93d9d454 (cdmlib): ref #10101 fix sortindex gaps in polytomous key merge
- 06:08 PM Revision 53f3deea (cdmlib): add cleansweep to PolytomousKeyNodeServiceTest tests
- 05:52 PM Revision 64ac4a3d (cdmlib): javadoc
- 05:52 PM Revision cf36c59d (cdmlib): ref #10101 fix possbile null value in refreshNodeNumbering
- 05:33 PM bug #10101: Correct mapping and handling of sorted tree structures
- Code comment from PostMergeEntityListener.java:
~~~
// #10101 the following code tried to handle orphanRemoval for ... - 09:25 AM bug #10101 (In Progress): Correct mapping and handling of sorted tree structures
- We currently have 3 sorted tree structures in the CDM: Classifications, TermTrees and PolytomousKeys.
The correct ... - 05:28 PM Revision e1284d9a (cdmlib): cleanup
- 05:26 PM Revision 794f69f0 (cdmlib): javadoc
- 05:25 PM Revision e6cd93a9 (cdmlib): ref #10101 add commented implementation for trying to handle orphan removal in the PostMergeEntityListener
- 04:48 PM Revision ae0e8692 (cdmlib): handle non-persisted objects in delete()
- 04:47 PM Revision 8f79b3aa (cdmlib): ref #3722, ref #8127, ref #5536, ref #10101 adapt test for removing PKNode and add new test for moving node and add LIE handling for node removal
- 04:45 PM Revision 0e628c63 (cdmlib): cleanup
- 04:40 PM Revision 28f29426 (cdmlib): add logging for exceptions in CdmPreDataChangeListener
- 02:05 PM Revision 8b07f256 (cdmlib): ref #10101 add some javadoc
- 10:50 AM Revision 60a7c724 (cdmlib): cleanup
- 12:47 AM Revision 473eee48 (cdmlib): ref #3722, ref #8127, ref #5536 preliminary make TermNode.children not orphanRemoval again
- 12:47 AM Revision edd423cc (cdmlib): cleanup
- 12:29 AM Revision a405f029 (cdmlib): ref #3722, ref #8127, ref #5536 remove sortIndex field check from SortIndexUpdaterWrapperTest
07/27/2022
- 11:59 PM Revision 322a51fd (cdmlib): cleanup
- 11:44 PM Revision 7161f1ec (cdmlib): ref #3722, ref #8127, ref #5536 preliminary make TaxonNode.children not orphanRemoval again
- 09:26 PM Revision 3bfeb049 (cdmlib): ref #3722, ref #8127, ref #5536 remove sortindex in jaxb annotations for tree lists
- 09:08 PM Revision 88b53ac2 (cdmlib): ref #3722, ref #8127, ref #5536 add test for PKNode merge
- 09:06 PM Revision 84e9fe95 (cdmlib): cleanup and javadoc
- 09:04 PM Revision fda2a953 (cdmlib): remove cascade to parent and key
- 09:02 PM Revision 221668f1 (cdmlib): add cascade delete to PK->PKNroot
- 08:56 PM Revision c8d47a7c (cdmlib): ref #3722, ref #8127, ref #10067, ref #5536 add orphan removal to ordered lists to avoid null value, sortindex and record not deleted issues
- 08:44 PM Revision 6e43909b (cdmlib): move children up to parent in code
- 02:55 PM Revision 688d7e78 (cdmlib): cleanup
- 02:52 PM Revision 54e0164b (cdmlib): ref #8127 reenable null value removal in Util class
- 10:09 AM task #8127 (Feedback): [Reminder] to check if Hibernate Null Value bug still exists
- Issue is not yet solved. There are still issues when merging/loading PolytomousKeyNodes, see #3722#note-14 and follow...
- 09:38 AM Revision 5e19d1f7 (cdmlib): ref #3722, ref #8127, ref #10067 fully remove sortindex and OrderBy comments
- 09:36 AM Revision f0562fe4 (cdmlib): cleanup
- 09:13 AM task #3722 (Closed): Using @OrderColumn does not work in trees
- This ticket is more about @OrderColumn generally does not work which is not the case. The remaining issue is a NULL-V...
- 01:48 AM feature request #10082 (Discussed): Improve formatting for pro parte misapplications
- 01:04 AM Revision 37eb6de9 (cdmlib): ref #10096 unified taxon node status handling during taxon node comparison (cont. II)
- 12:11 AM Revision 5e11051d (cdmlib): cleanup
- 12:11 AM Revision 97bed710 (cdmlib): ref #10096 unified taxon node status handling during taxon node comparison (cont.)
07/26/2022
- 11:55 PM Revision 00a1c85b (cdmlib): ref #10096 unified taxon node status handling during taxon node comparison
- 11:54 PM Revision 92ccbc3f (cdmlib): cleanup with minor change in TaxonNodeNaturalComparator
- 10:45 PM feature request #10057 (Resolved): Add "accessed" field to OriginalSourceBase
- This is implemented now in model and first implementations for OriginalSourceFormatter and TaxonBaseDefaultCacheStrat...
- 10:37 PM Revision 3bc75586 (taxeditor): ref #10057 allow accessed for all dynamic references
- 10:36 PM Revision 29de0400 (taxeditor): ref #10057 add accessed to OriginalSourceElements (still without update when citation type changes)
- 10:34 PM Revision 34445b96 (taxeditor): move handleEvent to base class in AbstractOriginalSourceElement
- 10:30 PM Revision 4c59a7ab (taxeditor): cleanup
- 09:33 PM Revision d8064d70 (taxeditor): fix externalLinks comparator (uri1 was compared to itself => always equal) and simplify it
- 09:27 PM Revision 79c0d0e3 (taxeditor): cleanup
- 08:32 PM Revision 11b37ac4 (cdmlib): ref #10057 fix detail only in OriginalSourceFormatter
- 08:07 PM Revision c024175d (cdmlib): ref #10057 adapt TaxonBaseDefaultCacheStrategy to secSource.accessed
- 07:52 PM Revision 4ff0780d (cdmlib): ref #10057 adapt OriginalSourceFormatter to source.accessed (partly preliminary)
- 07:51 PM Revision 91b8f506 (cdmlib): ref #10057 add IDynamicReference
- 07:48 PM Revision 23a7acba (cdmlib): cleanup
- 04:21 PM feature request #10096: Add new TaxonNode status and make notes field more general
- @Katja: can you please also have a look why there are 3 messages.properties that seem to hold the same values (in tax...
- 04:18 PM feature request #10096 (Resolved): Add new TaxonNode status and make notes field more general
- This should be fixed now. Katja, can you please review when back.
Please also have a look to the changes in TaxEdi... - 12:57 PM feature request #10096 (In Progress): Add new TaxonNode status and make notes field more general
- Status added and cdmlight adapted. Still need to test in taxeditor and dataportal.
- 11:05 AM feature request #10096: Add new TaxonNode status and make notes field more general
- WGB:
ich habe eine Diskussion aus dem Mai 2020 wieder aufgegriffen, da ich dringend eine Erweiterung des Placement... - 10:58 AM feature request #10096: Add new TaxonNode status and make notes field more general
- For details see attachement.
- 04:15 PM Revision 847947ba (taxeditor): cleanup
- 04:15 PM Revision 75f1593a (taxeditor): ref #10096 allow notes for all taxon nodes and rename STATUS_NOTES to PLACEMENT_NOTES
- 03:44 PM task #10100 (New): Rename statusNote into placementNote in TaxonNode
- ... for details see #10096
This is the model change ticket only. - 01:42 PM Revision 52369fe9 (cdmlib): cleanup
- 01:41 PM Revision dfc2be4b (cdmlib): ref #10096 fix cdmlight export test for taxon node status
- 01:04 PM Revision 1a15c467 (cdmlib): ref #10096 fix placement status and handle missing status as null (not "included")
- 01:02 PM Revision f2e4d29b (cdmlib): ref #10096 add placement status to cdmlight export as string
- 12:59 PM Revision e9d963ac (cdmlib): ref #10096 add excluded only to cdmlight export
- 12:56 PM Revision 4b7eaca0 (cdmlib): ref #10096 adapt cdmlight to new taxon node status and rename status notes to placement notes
- 12:55 PM Revision 271e9937 (cdmlib): ref #10096 add new taxon node status to TaxonNodeStatus and TaxonNode getters
- 12:54 PM Revision efebc4fc (cdmlib): javadoc and cleanup
- 10:16 AM task #10099 (New): Try to use log4j instead of logback in CDM server
- To avoid another framework on the classpath. Maybe this is possible now with log4j 2.
See eu.etaxonomy.cdm.server.... - 10:10 AM task #10072: Upgrade fully to log4j2
- There is still an issue with log4j-slf4j-impl in TaxEditor. For some reason it is not recognized as existing library ...
- 10:03 AM Revision 48155f47 (taxeditor): ref #9359 revert to older JavaAPIforKml in taxeditor (cont.)
- 12:26 AM Revision 649e1510 (taxeditor): ref #9359 revert to older JavaAPIforKml in taxeditor
- 12:19 AM Revision a5947b9d (cdmlib): ref #9359 finally revert JavaAPIforKml again
07/25/2022
- 11:55 PM Revision d35fdd42 (cdmlib): ref #9359 revert JavaAPIforKml again
- 11:10 PM Revision 734e4ac1 (taxeditor): ref #10072 fig build path and fully remove log4j-slfj-impl
- 10:59 PM Revision bf042c15 (taxeditor): ref #10072 second try to get log4j-slf4j-impl running in taxeditor
- 10:48 PM Revision 8118ae16 (taxeditor): ref #10072 remove log4j-slf4j-impl-2.18.0 from build.properties
- 10:46 PM Revision 21818529 (cdmlib): ref #9359 revert upgrading of JavaAPIforKml
- 10:44 PM Revision 27d0564b (taxeditor): cleanup
- 10:44 PM Revision cd536e0b (taxeditor): ref #10072 last try to get log4j-slf4j-impl running in taxeditor
- 10:26 PM Revision baf3f9ee (taxeditor): ref #10009, ref #10072, ref 9359 remove log4j-1.2.17 from taxeditor.local/lib
- 10:14 PM Revision 42fa0ffe (taxeditor): ref #10009, ref #10072, ref 9359 fully upgrade log4j to 2.18.0 in taxeditor and adapt import in local and gitignore
- 09:37 PM Revision a7170c6a (taxeditor): ref #10009, ref #10072, ref 9359 upgrade log4j to 2.18.0 in taxeditor.local
- 09:35 PM Revision 55eaa9e4 (taxeditor): cleanup
- 07:53 PM Revision 4ea5120d (taxeditor): ref #10009, ref #10072, ref 9359 upgrade log4j to 2.18.0 in taxeditor
- 07:44 PM Revision 9bdb596f (taxeditor): cleanup
- 07:44 PM Revision 25617a21 (taxeditor): ref #9359, ref #10009 add and upgrade JavaAPIforKml to version 3.0.1 from uk.m0nom in taxeditor (cont.)
- 07:43 PM Revision 662e077a (taxeditor): ref #10009, ref #10072 add log4j-slf4j to taxeditor
- 07:26 PM Revision 1c1f1876 (taxeditor): ref #9359, ref #10009 remove unused dependencies in taxeditor
- 07:24 PM Revision 27a68076 (taxeditor): ref #9359, ref #10009 add and upgrade JavaAPIforKml to version 3.0.1 from uk.m0nom in taxeditor
- 07:21 PM Revision e7cbe266 (cdmlib): ref #9359 try to upgrade JavaAPIforKml to version 3.0.1 from uk.m0nom
- 06:36 PM task #10009: Cleanup dependencies in TaxEditor
- The following dependencies were used in prior version but are currently not on the classpath:
~~~
lib/aspectjr... - 06:32 PM Revision 327a8f12 (taxeditor): minor
- 06:25 PM Revision 8102eff6 (taxeditor): ref #100009 re-attach mchange-commons-java to enable datasource dialogue finish button and error handling for button
- 06:23 PM Revision 5a9a3068 (taxeditor): cleanup
- 04:48 PM task #9975: Create new UML diagramms for the CDM
- java->uml generation is documented at: https://www.umldesigner.org/ref-doc/umlgen.html (Java to UML)
- 04:45 PM task #9975 (Discussed): Create new UML diagramms for the CDM
- There is a new repository for all platform UML documentation at ssh://git@dev.e-taxonomy.eu/var/git/platform.git .
... - 03:41 PM Revision d4090aec (cdmlib): cleanup and javadoc
- 12:40 PM Revision fd4bf415 (cdm-dataportal): ref #10097 changes originalNameString->originalInfo in dataportal
- 12:39 PM Revision 6958ddc3 (cdm-dataportal): cleanup
07/23/2022
- 12:49 AM bug #9785 (Closed): Update script for missing measurment unit_ids (matrix)
- I guess this worked. If we still find a database with non-updated data we should update manually.
- 12:43 AM feature request #9906: Implement credits in dataportal
- Model was adapte. Now we can implement in dataportal. Maybe we can do this during the performance sprint.
- 12:41 AM feature request #9908 (Closed): Add timeperiod to credits
- Implemented. Now we still need implementation in TaxEditor (#10098) and dataportal (#9906)
- 12:39 AM feature request #10098 (Closed): Implement timePeriod for Credit in TaxEditor
- see #9908 and #9906 for details
- 12:37 AM feature request #10097 (Closed): Rename originalNameString to originalInfo
- I guess this worked
- 12:36 AM Revision df9935a6 (taxeditor): ref #10097 adapt originalNameString in taxeditor test
- 12:33 AM bug #9901 (Closed): Remove unique key Media_RightsInfo.rights_id
- I guess this worked. I did not find any db with a uk-index only fk.
- 12:27 AM bug #9830 (Closed): México Distrito Federal needs accent
- Tested on integration_palmae
- 12:10 AM Revision ee5a4c23 (taxeditor): ref #9908 adapt credits in taxeditor
- 12:09 AM Revision 50e674c4 (taxeditor): ref #10097 adapt originalNameString in taxeditor
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