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From 07/01/2022 to 07/30/2022

07/30/2022

11:12 PM feature request #10082 (Closed): Improve formatting for pro parte misapplications
I checked on https://www.europlusmed.org/cdm_dataportal/taxon/63fead7a-662a-4082-9503-c6ea994c2049 and it looks fine. Andreas Müller
12:22 AM feature request #10082 (Resolved): Improve formatting for pro parte misapplications
Now it works in the dataportal, too:
![](clipboard-202207300021-sgo4r.png)
Katja, can you please review.
Andreas Müller
10:51 PM bug #10007 (Resolved): fix reindex jobs on jobber
This is more or less done. Maybe still need to do some cleanup. Andreas Müller
09:49 PM bug #9979: Flora Greece shows large images
Andreas Müller wrote in #note-11:
> The method findRepresentations($media) uses strict=true for thumbnail retrieval...
Andreas Müller
07:49 PM bug #9979 (In Progress): Flora Greece shows large images
Andreas Müller
06:53 PM bug #9979: Flora Greece shows large images
The method findRepresentations($media) uses strict=true for thumbnail retrieval. This is dangerous, because in this ... Andreas Müller
06:46 PM bug #9979: Flora Greece shows large images
The service which is called by the portal page https://api.cybertaxonomy.org/flora-greece/portal/taxon/8e75f1a8-e7f9-... Andreas Müller
08:27 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
If this is fixed already please add it to the release notes https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/Rele... Andreas Müller
07:54 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Before fully closing also check #5655 Andreas Müller
04:20 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Dataportal and cdmlight updated commit:cdm-dataportal|bf522fd0e17 and commit:f951f09989936db85
I created a temporary...
Andreas Müller
05:13 PM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
Andreas Müller wrote in #note-36:
> Should be resolved. All open issues moved to #10104.
>
> Still need to check ...
Andreas Müller
04:19 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
I added "is non" to dataportal output commit:cdm-dataportal|bf522fd0e17. Can you please check for cdmlight and close ... Andreas Müller
02:08 PM bug #10111 (In Progress): Data loss e.g. when entering type information
Andreas Müller
02:08 PM bug #10111: Data loss e.g. when entering type information
AM:
Hallo Walter,
ich habe mir das jetzt mal angesehen, konnte es erst nicht, dann ein paar Mal quasi direkt hi...
Andreas Müller
12:31 AM bug #10111: Data loss e.g. when entering type information
That the "Source" element is not shown (last mail from WGB) is a known issue handled at #10080 Andreas Müller
12:30 AM bug #10111 (In Progress): Data loss e.g. when entering type information
Sometimes type information gets lost when entered without immediate saving in type designation element
WGB:
mir...
Andreas Müller
12:09 AM feature request #10110: Show barcode also on PreservedSpecimen General details element not only on specific element
Please review. Andreas Müller
12:05 AM feature request #10110 (Resolved): Show barcode also on PreservedSpecimen General details element not only on specific element
Applied in changeset commit:taxeditor|bbebd47509e2bf94b059147209e53209836558b6. Andreas Müller

07/29/2022

11:51 PM feature request #10110 (Closed): Show barcode also on PreservedSpecimen General details element not only on specific element
WGB:
in diesem Formular ist der barcode erst auf der letzten Seite zu finden; im Bulk Editor und bei der EIngabe v...
Andreas Müller
10:39 PM feature request #10082: Improve formatting for pro parte misapplications
In dataportal it does not work yet as symbol is always rendered to "left" and "block", not "inline". I try new tagtyp... Andreas Müller
09:29 PM feature request #10082: Improve formatting for pro parte misapplications
In TaxEditor it works Andreas Müller
08:15 PM feature request #10082 (In Progress): Improve formatting for pro parte misapplications
implemented in formatter, still need to check how this looks like on a taxon page Andreas Müller
08:53 PM bug #10084 (Resolved): Adding a new specimen to character matrix fails
It looked to me as you did not yet revert, so I tried to do this by commit:78d9e692 . Please review. I already checke... Andreas Müller
08:49 PM task #10109 (New): Investigate best practice for HQL with enumset
Sine #7957 we use EnumSets as types. Hibernate mapping is implemented in EnumSetUserType class. The open issue here i... Andreas Müller
07:13 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
Has this been reported by a user? If yes please add as watcher. Andreas Müller
07:13 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
I got an NPE when changing to no status:
~~~
last remote method : https://test.e-taxonomy.eu:443/cdmserver/rem_co...
Andreas Müller
07:07 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
To me it happens also after changing to other designation status therefore I adapted the title.
The workarounds se...
Andreas Müller
06:26 PM bug #10078 (Resolved): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
I give this to me for updating data after the release. Give back to KL for cleanup and close afterwards. Andreas Müller
06:21 PM bug #9007 (Resolved): Enable i18n support for media description UI
I guess this is solved and can be closed? Remaining issues copied to new tickets. Please move back to original milest... Andreas Müller
06:19 PM bug #10108 (Closed): Description for MediaSpecimen not shown even if it exists (i18n)
copied from #9007#note-11
* the description is not available at all (but there might be data if the media reused a...
Andreas Müller
06:16 PM bug #10107: i18n bug when editing media not having a default language title
priority needs to be discussed Andreas Müller
06:15 PM bug #10107 (Closed): i18n bug when editing media not having a default language title
copied from #9007#note-11
i18n editing of the title is not available here, and to me it looks like when editing t...
Andreas Müller
06:05 PM feature request #8777: Make visiblity of CDM Source configurable
Query to find example:
~~~
SELECT *
FROM OriginalSourceBase osb INNER JOIN DescriptionElementBase deb ON deb.id ...
Andreas Müller
03:38 PM feature request #8777 (Resolved): Make visiblity of CDM Source configurable
Andreas Müller wrote in #note-5:
> Andreas Müller wrote:
> > ... hmm, maybe an even better solution is to show the ...
Andreas Müller
05:47 PM bug #10101: Correct mapping and handling of sorted tree structures
Finding duplicates:
~~~
SELECT pkn.key_id, pkn.parent_id, pkn.sortindex, COUNT(*) AS n
FROM PolytomousKeyNode pkn
GR...
Andreas Müller
02:15 PM bug #10101: Correct mapping and handling of sorted tree structures
Comment from onMerge in PostMergeEntityListener:
~~~
Added in context of working on #10101, it was unclear to me...
Andreas Müller
02:05 PM bug #10101: Correct mapping and handling of sorted tree structures
I removed the HHH_9751_Util class as it is currently not used anymore, please recreate from commit:cb923587ce746 and ... Andreas Müller
01:36 PM bug #10101 (In Progress): Correct mapping and handling of sorted tree structures
I added tests for mergeDetached and saveDetached on nodes and trees and with removal and move of nodes to PolytomousK... Andreas Müller
03:29 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
Please still remove the whitespace (see #note-13 and review the cdmlight implementation). Then we can close the ticket. Andreas Müller
03:26 PM bug #10034 (Closed): Flat feature tree throws exception
Andreas Müller
03:26 PM bug #10034: Flat feature tree throws exception
Moved open issues to #10053 and close this ticket. Andreas Müller
03:25 PM bug #10106 (New): Open issues from feature tree editing
copied from #10034#note-7
However, the labeling of the tree still behaves strange sometimes. If you add a child th...
Andreas Müller
03:09 PM task #10072: Upgrade fully to log4j2
I also had problems installing the correct logging when running cdmlib test in IDE (here tests in cdmlib-services). T... Andreas Müller
03:08 PM task #10072: Upgrade fully to log4j2
TaxEditor issue moved to new ticket #10105. Andreas Müller
03:07 PM bug #10105 (New): Fix logging in TaxEditor after migration to log4j 2
for details see #10072#note-15
There are error message when starting the editor. Also in tests.
log4j-slf4j-im...
Andreas Müller
03:03 PM bug #10033 (Feedback): For new FeatureTree only uuid is shown in dataportal
Are there still open issues? Andreas Müller
02:57 PM bug #10071 (Feedback): TaxonNodeDtos should be created directly not from taxon objects
Is this fixed? Andreas Müller
02:36 PM task #10067 (Resolved): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
Should be resolved. All open issues moved to #10104.
Still need to check the
~~~
TypedQuery<String[]>
~~~
issue.
Andreas Müller
02:34 PM task #10104 (New): Cleanup after hibernate v5.4.33 migration
for details see #10067 . Some cleanup is still needed.
Open issues are:
* Check for Queries with TypeQuery<Stri...
Andreas Müller
02:06 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
I removed the HHH_9751_Util class as it is currently not used anymore, please recreate from commit:cb923587ce746 and ... Andreas Müller
12:54 PM task #8127 (Discussed): [Reminder] to check if Hibernate Null Value bug still exists
The PolytoumsKey loading issue seems to be solved in TaxEditor by fixes done for #10101. However, the tests created f... Andreas Müller
12:34 PM feature request #10103 (New): Add "Included" as default status to taxon node status
Needs update script for existing data.
For details see #10096
Andreas Müller
12:32 PM feature request #10096: Add new TaxonNode status and make notes field more general
AM:
ich habe das jetzt mal implementiert. Es sollte im nächsten Release (vermutlich noch diese Woche) drin sein.
...
Andreas Müller
11:09 AM bug #10102 (Closed): Non-names formatted in italics
WGB:
mir ist eben dann auch aufgefallen, dass die „non“-Namen nicht kursiv formatiert werden:
− <i>Achyranthes<...
Andreas Müller

07/28/2022

05:33 PM bug #10101: Correct mapping and handling of sorted tree structures
Code comment from PostMergeEntityListener.java:
~~~
// #10101 the following code tried to handle orphanRemoval for ...
Andreas Müller
09:25 AM bug #10101 (In Progress): Correct mapping and handling of sorted tree structures
We currently have 3 sorted tree structures in the CDM: Classifications, TermTrees and PolytomousKeys.
The correct ...
Andreas Müller

07/27/2022

10:09 AM task #8127 (Feedback): [Reminder] to check if Hibernate Null Value bug still exists
Issue is not yet solved. There are still issues when merging/loading PolytomousKeyNodes, see #3722#note-14 and follow... Andreas Müller
09:13 AM task #3722 (Closed): Using @OrderColumn does not work in trees
This ticket is more about @OrderColumn generally does not work which is not the case. The remaining issue is a NULL-V... Andreas Müller
01:48 AM feature request #10082 (Discussed): Improve formatting for pro parte misapplications
Andreas Müller

07/26/2022

10:45 PM feature request #10057 (Resolved): Add "accessed" field to OriginalSourceBase
This is implemented now in model and first implementations for OriginalSourceFormatter and TaxonBaseDefaultCacheStrat... Andreas Müller
04:21 PM feature request #10096: Add new TaxonNode status and make notes field more general
@Katja: can you please also have a look why there are 3 messages.properties that seem to hold the same values (in tax... Andreas Müller
04:18 PM feature request #10096 (Resolved): Add new TaxonNode status and make notes field more general
This should be fixed now. Katja, can you please review when back.
Please also have a look to the changes in TaxEdi...
Andreas Müller
12:57 PM feature request #10096 (In Progress): Add new TaxonNode status and make notes field more general
Status added and cdmlight adapted. Still need to test in taxeditor and dataportal. Andreas Müller
11:05 AM feature request #10096: Add new TaxonNode status and make notes field more general
WGB:
ich habe eine Diskussion aus dem Mai 2020 wieder aufgegriffen, da ich dringend eine Erweiterung des Placement...
Andreas Müller
10:58 AM feature request #10096: Add new TaxonNode status and make notes field more general
For details see attachement. Andreas Müller
03:44 PM task #10100 (New): Rename statusNote into placementNote in TaxonNode
... for details see #10096
This is the model change ticket only.
Andreas Müller
10:16 AM task #10099 (New): Try to use log4j instead of logback in CDM server
To avoid another framework on the classpath. Maybe this is possible now with log4j 2.
See eu.etaxonomy.cdm.server....
Andreas Müller
10:10 AM task #10072: Upgrade fully to log4j2
There is still an issue with log4j-slf4j-impl in TaxEditor. For some reason it is not recognized as existing library ... Andreas Müller

07/25/2022

06:36 PM task #10009: Cleanup dependencies in TaxEditor
The following dependencies were used in prior version but are currently not on the classpath:
~~~
lib/aspectjr...
Andreas Müller
04:48 PM task #9975: Create new UML diagramms for the CDM
java->uml generation is documented at: https://www.umldesigner.org/ref-doc/umlgen.html (Java to UML) Andreas Müller
04:45 PM task #9975 (Discussed): Create new UML diagramms for the CDM
There is a new repository for all platform UML documentation at ssh://git@dev.e-taxonomy.eu/var/git/platform.git .
...
Andreas Müller

07/23/2022

12:49 AM bug #9785 (Closed): Update script for missing measurment unit_ids (matrix)
I guess this worked. If we still find a database with non-updated data we should update manually. Andreas Müller
12:43 AM feature request #9906: Implement credits in dataportal
Model was adapte. Now we can implement in dataportal. Maybe we can do this during the performance sprint. Andreas Müller
12:41 AM feature request #9908 (Closed): Add timeperiod to credits
Implemented. Now we still need implementation in TaxEditor (#10098) and dataportal (#9906) Andreas Müller
12:39 AM feature request #10098 (Closed): Implement timePeriod for Credit in TaxEditor
see #9908 and #9906 for details Andreas Müller
12:37 AM feature request #10097 (Closed): Rename originalNameString to originalInfo
I guess this worked Andreas Müller
12:33 AM bug #9901 (Closed): Remove unique key Media_RightsInfo.rights_id
I guess this worked. I did not find any db with a uk-index only fk. Andreas Müller
12:27 AM bug #9830 (Closed): México Distrito Federal needs accent
Tested on integration_palmae Andreas Müller

07/22/2022

07:39 PM feature request #10097 (Resolved): Rename originalNameString to originalInfo
Resolved in cdmlib and probably also in dataportal and vaadin, but still needs adaptation in taxEditor Andreas Müller
03:34 PM feature request #10097: Rename originalNameString to originalInfo
Original Doumentation from DescriptionElementSource:
~~~
* The use of "originalNameString" within a DescriptionE...
Andreas Müller
03:21 PM feature request #10097 (Closed): Rename originalNameString to originalInfo
... as we agreed on storing all kind of original (verbatim) information in this field, not only taxon names. Andreas Müller
06:29 PM feature request #9908 (Resolved): Add timeperiod to credits
Class adapted and update script written. Andreas Müller
05:45 PM bug #9785 (Resolved): Update script for missing measurment unit_ids (matrix)
Update script written Andreas Müller
05:12 PM bug #9830 (Resolved): México Distrito Federal needs accent
update script added Andreas Müller
05:00 PM bug #9901 (Resolved): Remove unique key Media_RightsInfo.rights_id
Andreas Müller
04:56 PM feature request #10057 (In Progress): Add "accessed" field to OriginalSourceBase
Model change done (not yet tested). Still needs cache strategy update and TaxEditor adaptation. Also maybe in Phycoba... Andreas Müller

07/21/2022

07:08 PM bug #10044 (Closed): Maps in Flore Du Gabon are broken
I reimported all data (#10092) and (afterwards) moved all textdata based distribution to "Distribution (General)" and... Andreas Müller
07:02 PM task #10009 (Resolved): Cleanup dependencies in TaxEditor
Seems to work but still needs intensive testing and maybe some cleanup. Andreas Müller
06:58 PM task #10072: Upgrade fully to log4j2
Can you please review and maybe work on the **clean up** open issues a bit so we get clean code soon. Andreas Müller
04:06 PM task #10072 (Resolved): Upgrade fully to log4j2
More or less solved.
Open issues:
* ~~handl setLevel() better (see current workaround in cdmlib-commons LogUtils cl...
Andreas Müller
05:48 PM task #9205 (Resolved): Remove apache-log4j-extras from TaxEditor dependencies
This should be fixed with adapting TaxEditor to log4j2 and adapting the according log4j.properties
Please review.
Andreas Müller
04:53 PM bug #10090: Many LIEs in cdmserver log for Team.getCollectorTitleCache()
Should be fixed. Please review. Andreas Müller
04:52 PM task #10095 (Closed): Synchronize dependency versions in CdmServer
Andreas Müller
04:04 PM task #10095 (Resolved): Synchronize dependency versions in CdmServer
This is mostly done except for aopalliance which will be removed automatically when upgrading to spring 5.x Andreas Müller
04:51 PM feature request #10096 (Discussed): Add new TaxonNode status and make notes field more general
Andreas Müller
04:51 PM feature request #10096 (Closed): Add new TaxonNode status and make notes field more general
Add taxon node status
* Excluded geo., øg (geographically out of scope); specification of excluded status
* Exclu...
Andreas Müller

07/20/2022

02:16 PM task #10095 (In Progress): Synchronize dependency versions in CdmServer
Andreas Müller
02:16 PM task #10095 (Closed): Synchronize dependency versions in CdmServer
The CdmServer is a merge from cdmlib-remote-webapp and cdm-vaadin. Therefore it can happen that the same dependency a... Andreas Müller

07/19/2022

06:31 PM task #10094: Reenabel anttask for 001-cdm.h2.sql creation
This is on the log on the very beginning (after git fetch), however, it looks like it was there before already.
~~...
Andreas Müller
06:02 PM task #10094: Reenabel anttask for 001-cdm.h2.sql creation
It had to be switched due to errors during build in jenkins.
Log:
~~~
[ERROR] Failed to execute goal org.apach...
Andreas Müller
05:52 PM task #10094 (New): Reenabel anttask for 001-cdm.h2.sql creation
Andreas Müller

07/18/2022

10:10 PM feature request #10093 (New): Create print publication classification output using docx4j
https://www.baeldung.com/docx4j
https://javadoc.io/doc/org.docx4j/docx4j/latest/index.html
Andreas Müller

07/15/2022

03:33 PM bug #10090: Many LIEs in cdmserver log for Team.getCollectorTitleCache()
The reason was a missing property path for secsource authors.
The reason why it happened for **collectorTitleCache...
Andreas Müller
02:02 PM bug #10090 (Resolved): Many LIEs in cdmserver log for Team.getCollectorTitleCache()
Applied in changeset commit:cdmlib|6c536aa028a283ed2041899ac33a13baa41bcaeb. Andreas Müller

07/14/2022

06:26 PM task #10091 (Closed): Add stacktrace to JSON repsonse
This should be fixed. It is now possible to show the error message and the stacktrace of a failing webservice by addi... Andreas Müller
09:43 AM task #10091 (Resolved): Add stacktrace to JSON repsonse
Applied in changeset commit:cdmlib|0fffbab66709e2a4401a7fdc3ff4df8bc5fe1afe. Andreas Müller
09:38 AM task #10091 (Closed): Add stacktrace to JSON repsonse
... for better error finding Andreas Müller

07/13/2022

07:51 PM bug #10090: Many LIEs in cdmserver log for Team.getCollectorTitleCache()
maybe related to #9949 Andreas Müller
07:49 PM bug #10090 (Closed): Many LIEs in cdmserver log for Team.getCollectorTitleCache()
from int cdmserver (startup.log)
~~~
Caused by: org.hibernate.LazyInitializationException: failed to lazily initi...
Andreas Müller
12:34 AM bug #10089 (Resolved): Order TypeDesignationSetContainer by status type
Applied in changeset commit:cdmlib|7af46cd80139907f3c80f4ee1ad644a0260c7b18. Andreas Müller

07/12/2022

08:13 PM bug #10089 (Closed): Order TypeDesignationSetContainer by status type
Currently it is first ordered by base entity (e.g. field unit) alphabetically and only within TypeDesignationWorkingS... Andreas Müller

07/11/2022

06:48 PM feature request #10081: Show name in source for sec ref of accepted taxon
I also implemented for CDM light (commit:9e545c61). This was still missing as CDM light does not use the TaxonDefault... Andreas Müller
03:03 PM feature request #10088 (New): Implement bibliography parser
Pensoft uses:
For the parser you can check https://anystyle.io/. It works pretty well in most cases.
Andreas Müller
01:05 PM feature request #10087 (Resolved): Add taxon node source to status notes in cdmlight
This is implemented, however, we still need to discuss if this is really the correct solution or if we better should ... Andreas Müller
12:55 PM feature request #10087: Add taxon node source to status notes in cdmlight
AM:
Ganz sicher bin ich mir aber nicht, ob das semantisch immer 100% richtig ist. Die Placement Source ist ja eine g...
Andreas Müller
11:43 AM feature request #10087: Add taxon node source to status notes in cdmlight
WGB:
Hallo,
mir ist aufgefallen, dass in Taxon.csv zwar die „Status notes“ (aus dem Taxon Node Dialog) ausgegeben...
Andreas Müller
11:42 AM feature request #10087 (Closed): Add taxon node source to status notes in cdmlight
Andreas Müller

07/10/2022

10:37 AM task #10064: Upgrade cybertaxonomy.org to Drupal9
Editing text on https://cybertaxonomy.org/setups/group/server_requirements does not work. The text seems to be store... Andreas Müller

07/08/2022

11:21 PM task #10064: Upgrade cybertaxonomy.org to Drupal9
On https://cybertaxonomy.org/node/4/edit I tried to change the link for "Taxonomic Editor (TaxEditor)" from "http://w... Andreas Müller
11:06 PM bug #10079: Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
Remaining issues should be solved in next milestone Andreas Müller
11:05 PM bug #8343 (Closed): potential timezone problem in application stack
I think this ticket can be closed. The timezone problem is now solved with correct availability of timezone informati... Andreas Müller
10:58 PM feature request #10081: Show name in source for sec ref of accepted taxon
Tests and improved handling of secundum part is handled in #10085 Andreas Müller
10:33 PM feature request #10081 (Feedback): Show name in source for sec ref of accepted taxon
Generally works but there is an unwanted whitespace after the closing bracket.
See https://test.e-taxonomy.eu/dat...
Andreas Müller
10:54 PM bug #10075 (Closed): Fix deserialization exception for bytebuddy base hibernate SerializableProxy
I think we can close this ticket as the problem did not show up anymore. Andreas Müller
10:53 PM task #3722 (Feedback): Using @OrderColumn does not work in trees
Andreas Müller
10:39 PM bug #10059 (Closed): Link for stored under and identification on specimen page does not work correctly
Works as expected Andreas Müller
09:33 PM bug #10076 (Closed): Exception when opening character matrix with classification as root node
Works as expected. Andreas Müller
04:32 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Update script is written and checked on integration.
Dataportal and cdmlight(?) still need to be updated.
Relationsh...
Andreas Müller
04:20 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
~~~
SELECT r.id relId, n1.titleCache n1, t.titleCache rel, n2.titleCache n2, n1.nameCache n1short, n2.nameCache n2sho...
Andreas Müller
02:26 PM feature request #10086: Taxonomic and geographic search for data portal
ERS:
das typische Ergebnis einer Geo-Abfrage sieht so aus:
![](clipboard-202207081421-julug.png)

Man wählt ...
Andreas Müller
02:22 PM feature request #10086 (New): Taxonomic and geographic search for data portal
Geo search already works but the taxonomic filter is still missing. This is a filter on any higher taxon (>= genus ?)... Andreas Müller
02:15 PM task #8865 (In Progress): more external-links to be implemented
Eckhard, can you please check if there is still some issue open from this ticket or if it can be closed? Andreas Müller

07/07/2022

02:35 PM feature request #10083 (Resolved): Add name relationship type "avoids homonym of"/"causes replacement name"
The relationship was added. We still need an update script or handling for the inverse label and for existing data. Andreas Müller
12:44 PM bug #10084: Adding a new specimen to character matrix fails
Katja Luther wrote in #note-4:
> Andreas Müller wrote in #note-3:
> > Generally the bug seems to be fixed and the t...
Katja Luther

07/06/2022

03:17 PM feature request #10081: Show name in source for sec ref of accepted taxon
Added a new tag for the separators surrounding the name used in source, this is extracted from the taggedTaxon and if... Katja Luther
10:11 AM task #3722: Using @OrderColumn does not work in trees
On PolytomousKeys:
* added a fresh PK
* added a new top level node (like always) results in a sortindex 1 for thi...
Andreas Müller
09:56 AM task #3722: Using @OrderColumn does not work in trees
Andreas Müller wrote in #note-18:
> Term trees/nodes also seem to work. Katja, can you please double check this?
...
Katja Luther
10:00 AM bug #10084 (Feedback): Adding a new specimen to character matrix fails
Andreas Müller
10:00 AM bug #10084: Adding a new specimen to character matrix fails
Katja Luther wrote in #note-4:
> Sometimes it needs a break, than a better solution could be found. I solved it with...
Andreas Müller
09:50 AM bug #10084 (Resolved): Adding a new specimen to character matrix fails
Andreas Müller wrote in #note-3:
> Generally the bug seems to be fixed and the ticket can be closed.
>
> Only the...
Katja Luther

07/05/2022

06:15 PM task #3722: Using @OrderColumn does not work in trees
Term trees/nodes also seem to work. Katja, can you please double check this? Andreas Müller
06:15 PM task #3722: Using @OrderColumn does not work in trees
SQL for testing persisted Polytomous Key Nodes:
~~~SQL
SELECT pkn.id, pkn.created, nodenumber, KEY_id, parent_id,...
Andreas Müller
06:08 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
See also #3722#note-14 ff for comments relevant here. Andreas Müller
05:57 PM bug #10084 (Feedback): Adding a new specimen to character matrix fails
Generally the bug seems to be fixed and the ticket can be closed.
Only the handling of descriptionType in the code...
Andreas Müller
04:01 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
Set the font-style for separator to normal, this is the way it is done for markers. Please review.
I also will have...
Katja Luther
01:43 PM feature request #10081 (Feedback): Show name in source for sec ref of accepted taxon
The current formatting shows brackets and "sub" in italics but only the name parts should be in italics.
This is b...
Andreas Müller
01:32 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
Katja Luther
01:32 PM feature request #10081: Show name in source for sec ref of accepted taxon
with the correct init strategy the name in source is shown. for review : https://int.e-taxonomy.eu/dataportal/integra... Katja Luther
09:56 AM bug #10079: Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
I discussed with WHK how far time information is needed in the phycobank dataportal. According to WHK it is (currentl... Andreas Müller
 

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