Project

General

Profile

Activity

From 06/07/2022 to 07/06/2022

07/06/2022

04:12 PM Revision 36a4dfbd (cdmlib): ref #10081: add secNameInSourceSeparator to separator
Katja Luther
03:19 PM Revision a1998e47 (cdm-dataportal): ref #10081: remove the font-style for separator again
Katja Luther
03:18 PM Revision 143a6271 (cdmlib): ref #10081: add tag secNameInSourceSeparator and use it in cacheStrategy
Katja Luther
03:17 PM feature request #10081: Show name in source for sec ref of accepted taxon
Added a new tag for the separators surrounding the name used in source, this is extracted from the taggedTaxon and if... Katja Luther
03:03 PM Revision ff162af3 (cdm-dataportal): ref #10081: adapt nameInSource handling in portal
Katja Luther
10:11 AM task #3722: Using @OrderColumn does not work in trees
On PolytomousKeys:
* added a fresh PK
* added a new top level node (like always) results in a sortindex 1 for thi...
Andreas Müller
09:56 AM task #3722: Using @OrderColumn does not work in trees
Andreas Müller wrote in #note-18:
> Term trees/nodes also seem to work. Katja, can you please double check this?
...
Katja Luther
10:00 AM bug #10084 (Feedback): Adding a new specimen to character matrix fails
Andreas Müller
10:00 AM bug #10084: Adding a new specimen to character matrix fails
Katja Luther wrote in #note-4:
> Sometimes it needs a break, than a better solution could be found. I solved it with...
Andreas Müller
09:50 AM bug #10084 (Resolved): Adding a new specimen to character matrix fails
Andreas Müller wrote in #note-3:
> Generally the bug seems to be fixed and the ticket can be closed.
>
> Only the...
Katja Luther
09:49 AM Revision f134a838 (cdmlib): ref #10084: add type comparison to hql again
Katja Luther

07/05/2022

11:24 PM Revision 4d1f9d42 (taxeditor): cleanup
Andreas Müller
11:19 PM Revision 5e838349 (taxeditor): cleanup
Andreas Müller
11:14 PM Revision 599c91e5 (taxeditor): cleanup
Andreas Müller
10:56 PM Revision 9a6e5099 (cdmlib): cleanup
Andreas Müller
10:55 PM Revision 758086db (taxeditor): Preferenzen->Präferenzen
Andreas Müller
10:55 PM Revision 3f5ed758 (taxeditor): cleanup
Andreas Müller
10:20 PM Revision 35105144 (cdmlib): ref #10067, ref #3722, ref #8127 remove remaining sortindex handling from polytomous key node
Andreas Müller
10:19 PM Revision 4b8da4a0 (cdmlib): cleanup
Andreas Müller
06:15 PM task #3722: Using @OrderColumn does not work in trees
Term trees/nodes also seem to work. Katja, can you please double check this? Andreas Müller
06:15 PM task #3722: Using @OrderColumn does not work in trees
SQL for testing persisted Polytomous Key Nodes:
~~~SQL
SELECT pkn.id, pkn.created, nodenumber, KEY_id, parent_id,...
Andreas Müller
06:08 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
See also #3722#note-14 ff for comments relevant here. Andreas Müller
05:57 PM bug #10084 (Feedback): Adding a new specimen to character matrix fails
Generally the bug seems to be fixed and the ticket can be closed.
Only the handling of descriptionType in the code...
Andreas Müller
04:01 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
Set the font-style for separator to normal, this is the way it is done for markers. Please review.
I also will have...
Katja Luther
01:43 PM feature request #10081 (Feedback): Show name in source for sec ref of accepted taxon
The current formatting shows brackets and "sub" in italics but only the name parts should be in italics.
This is b...
Andreas Müller
01:32 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
Katja Luther
01:32 PM feature request #10081: Show name in source for sec ref of accepted taxon
with the correct init strategy the name in source is shown. for review : https://int.e-taxonomy.eu/dataportal/integra... Katja Luther
03:57 PM Revision c377a0d9 (cdm-dataportal): ref #10081: add separator font-style
Katja Luther
01:52 PM Revision 3b4b9e2f (taxeditor): ref #10067, ref #3722, ref #8127 remove null value handling from PolytomousKeyGraphContentProvider in taxEditor
Andreas Müller
01:28 PM Revision 5c45a99a (cdmlib): ref #10067, ref #3722, ref #8127 remove all manual sortindex and null value handling from polytomous key (node)
Andreas Müller
01:25 PM Revision 0694bb3d (cdmlib): ref #10067, ref #8127 remove remaining null value handling from taxon node
Andreas Müller
01:24 PM Revision 3dc1adc5 (cdmlib): ref #10067, ref #3722, ref #8127 remove all manual sortindex and null value handling from term node
Andreas Müller
01:19 PM Revision ab85ad67 (cdmlib): ref #10067, ref #8127 remove "removeAllNull" (HHH_9751_Util) from DescriptionBase
Andreas Müller
11:16 AM Revision 059a8e53 (taxeditor): ref #8818: remove predicate from distribution status table in preferences
Katja Luther
09:56 AM bug #10079: Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
I discussed with WHK how far time information is needed in the phycobank dataportal. According to WHK it is (currentl... Andreas Müller
09:46 AM Revision edb488c8 (taxeditor): test
Katja Luther

07/04/2022

10:35 PM Revision 84f11f2b (cdmlib): revert remove strange IkeyPlusImport properties files in io/src/test/resources/main
Andreas Müller
10:12 PM Revision bb03b5f4 (cdmlib): cleanup and remove strange IkeyPlusImport properties files in io/src/test/resources/main
Andreas Müller
10:02 PM Revision 53fc098d (taxeditor): improve logging for exception in AbstractPersistentCollection.remoteInitialize()
Andreas Müller
09:43 PM Revision f13320e2 (cdmlib): fix CCE in IOServiceImpl for URI based imports
Andreas Müller
09:43 PM Revision 27f9f715 (cdmlib): cleanup and javadoc
Andreas Müller
03:43 PM Revision 4c68380d (cdmlib-apps): ref #9359 remove hsqldb StringComparator from ErmsTaxonImport
Andreas Müller
03:43 PM Revision 5bb9c7d1 (cdmlib-apps): update e-Flora and pesi to 5.32.0-SNAPSHOT
Andreas Müller
03:35 PM Revision e11ce0a9 (cdmlib-apps): cleanup
Andreas Müller
03:35 PM Revision 4b88f183 (cdmlib-apps): adapt BerlinModelImport to new cacheStrategy getter
Andreas Müller
03:34 PM Revision b10eeaf7 (cdmlib-apps): update app-import to 5.32.0-SNAPSHOT
Andreas Müller
03:30 PM Revision 8c64898f (cdmlib): ref #9359 update log4j to 2.18.0 in cdmlib
Andreas Müller
03:29 PM Revision 7af8b889 (utis-webapp): ref #9359 update log4j to 2.18.0 in utis-webapp
Andreas Müller
03:27 PM Revision f2234658 (cdm-dataportal): ref #9359 update log4j to 2.18.0 in dataportal
Andreas Müller
03:04 PM Revision c7e9d1ed (cdmlib): add nomenclatural author of nameInSource to init strategy
Katja Luther
12:29 PM Revision 904397ee (taxeditor): remove debug messages
Katja Luther
12:19 PM Revision bc55416e (cdmlib): ref #10081: add nameUsedInSource to initStrategy
Katja Luther
10:22 AM Revision 4287668c (taxeditor): add debugging for source section
Katja Luther
09:52 AM Revision ea87ffcb (taxeditor): add debugging for source section
Katja Luther
09:25 AM Revision 083eabed (taxeditor): minor
Katja Luther

07/01/2022

11:26 AM Revision f29ead53 (taxeditor): ref #10080: add messages
Katja Luther

06/29/2022

06:31 PM Revision 00931afd (cdmlib): cleanup
Andreas Müller
06:14 PM Revision 2c1a59f9 (taxeditor): adapt TaxEditor to WordTermExportConfigurator
Andreas Müller
06:14 PM Revision c7f0af52 (taxeditor): cleanup
Andreas Müller
04:27 PM Revision 5552c0c6 (cdmlib): rename WordTermExport
Andreas Müller

06/28/2022

05:52 PM bug #10080 (In Progress): Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
This is really strange behavior, the source element should be shown every time but in stable and nightly the source i... Katja Luther
12:59 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
We need to check if this can be done fast. Andreas Müller
11:49 AM bug #10076 (Resolved): Exception when opening character matrix with classification as root node
This should be fixed, please review. Katja Luther
11:46 AM bug #10084 (Resolved): Adding a new specimen to character matrix fails
Please review. Katja Luther
11:43 AM bug #10084 (Closed): Adding a new specimen to character matrix fails
The following exception appears when trying to save the character matrix after adding a new specimen:
~~~
last ...
Katja Luther
11:44 AM Revision bce2d0e5 (cdmlib): fix 10084: fix problem with missing taxonuuid in dto
Katja Luther
09:23 AM feature request #10082: Improve formatting for pro parte misapplications
Example: https://europlusmed.org/cdm_dataportal/taxon/63fead7a-662a-4082-9503-c6ea994c2049 Andreas Müller

06/27/2022

02:21 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Separate discussion WGB-AM:
...
AM
ja, das war semantisch nie einfach, was bei blocking name was ist bzw. be...
Andreas Müller
02:18 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
AM:
diese Mail ist letztes Jahr leider bei mir liegen geblieben. Aus aktuellem Anlass würde ich sie gerne wieder a...
Andreas Müller
02:14 PM feature request #10083 (Discussed): Add name relationship type "avoids homonym of"/"causes replacement name"
ERS:
das Pendant zu „is blocking name for“ lautet „is new combination blocked by“. Es gibt aber auch den Fall, das...
Andreas Müller
01:51 PM feature request #10083 (Closed): Add name relationship type "avoids homonym of"/"causes replacement name"
Currently we have a name relationship type "is blocking name for" with a label "is new combination blocked by" for th... Andreas Müller
12:07 PM feature request #10082 (Closed): Improve formatting for pro parte misapplications
ERS:
... kann ich mich nicht mehr erinnern, ob wir uns schon auf eine einheitliche Darstellung des „p.p.“ geeinigt...
Andreas Müller
11:55 AM feature request #10081: Show name in source for sec ref of accepted taxon
... and can you also please review my implementation. Andreas Müller
11:54 AM feature request #10081 (In Progress): Show name in source for sec ref of accepted taxon
I implemented the cache strategy part. Katja, can you please take over and check what needs to be done for the portal... Andreas Müller
11:22 AM feature request #10081: Show name in source for sec ref of accepted taxon
AM:
Könntest du kurz ein Beispiel geben, wie das genau formattiert werden soll? Also ob mit eckiger(?) Klammer dru...
Andreas Müller
11:52 AM Revision 5f41e9a8 (cdmlib): ref #10081 add nameUsedIn sec source to accepted taxon cache strategy
Andreas Müller

06/24/2022

05:04 PM Revision 009c376e (cdmlib): code cleaning
Katja Luther
05:04 PM Revision e11d6984 (cdmlib): code cleaning
Katja Luther
03:13 PM Revision 7fd76b2b (cdmlib): ref #10067, ref #3722, ref #8127 preliminary add sortIndex field again to avoid problem with model cache in TaxEditor (cont. fix JAXB issue)
Andreas Müller
03:02 PM Revision c3d56a52 (cdmlib): cleanup
Andreas Müller
02:42 PM Revision 172c0b19 (cdmlib): ref #10067, ref #3722, ref #8127 preliminary add sortIndex field again to avoid problem with model cache in TaxEditor
Andreas Müller
01:19 PM Revision 3b96b3e5 (cdmlib): cleanup
Andreas Müller
01:19 PM Revision e1fe2afa (cdmlib): ref #10067, ref #3722, ref #8127 fully remove TaxonNode sortindex code from TaxonNode and CdmLight
Andreas Müller
01:09 PM Revision bcc64240 (cdmlib): cleanup
Andreas Müller
12:22 PM feature request #10081 (Closed): Show name in source for sec ref of accepted taxon
WGB:
ich finde kein Setting, mit dem ich den Name in Source bei der sec. Ref. des [akzeptierten] Taxons ausgeben k...
Andreas Müller

06/23/2022

01:54 PM bug #10080 (In Progress): Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
When selecting the designation status holotype removes the source section of the typedesignation details view. Katja Luther
01:12 PM bug #9979: Flora Greece shows large images
Andreas Müller wrote in #note-6:
> Katja Luther wrote in #note-5:
> > This problem appears if the limit for the thumb...
Katja Luther
01:10 PM bug #9979: Flora Greece shows large images
Katja Luther wrote in #note-5:
> This problem appears if the limit for the thumbnail size is smaller as the size of ...
Andreas Müller
01:03 PM bug #9979: Flora Greece shows large images
This problem appears if the limit for the thumbnail size is smaller as the size of the smallest representation. Then ... Katja Luther
01:06 PM task #3722: Using @OrderColumn does not work in trees
Andreas Müller wrote in #note-15:
> Katja Luther wrote in #note-14:
> > For polytomouskey nodes there are still null ...
Katja Luther
12:20 PM task #3722: Using @OrderColumn does not work in trees
Katja Luther wrote in #note-14:
> For polytomouskey nodes there are still null values, after creating a new alternat...
Andreas Müller
10:45 AM task #3722: Using @OrderColumn does not work in trees
For polytomouskey nodes there are still null values, after creating a new alternativ and saving the rootnode contains... Katja Luther
12:09 PM Revision 7ed19664 (cdmlib): cleanup
Andreas Müller
10:30 AM Revision ca55a577 (taxeditor): change suffix for ris import to ris and *
Katja Luther

06/22/2022

07:39 PM bug #9979: Flora Greece shows large images
As you currently work in this area I give this ticket to you for now. Andreas Müller
07:36 PM task #8127 (Resolved): [Reminder] to check if Hibernate Null Value bug still exists
Probably solved but still needs code cleanup. Andreas Müller
07:35 PM task #3722: Using @OrderColumn does not work in trees
Please review. Andreas Müller
07:27 PM bug #10034 (Feedback): Flat feature tree throws exception
The initial issue is fixed (or workarounded) correctly.
However, the labeling of the tree still behaves strange some...
Andreas Müller
07:11 PM bug #10078: Symbol and details view title of misapplied name type is not the same as shown in the type combo element
IMPORTANT:
Before closing the ticket we need to check existing data in production databases for incorrect relation...
Andreas Müller
05:05 PM bug #10078 (Feedback): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
Seems to work correctly and code changes make sense. Can you still remove not needed commented code (and maybe also r... Andreas Müller
12:04 PM bug #10078 (Resolved): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
This should be solved, please review. Katja Luther
11:34 AM bug #10078: Symbol and details view title of misapplied name type is not the same as shown in the type combo element
Andreas Müller wrote in #note-2:
> I do not understand the title of this ticket. The problem to me seems that the se...
Katja Luther
11:29 AM bug #10078: Symbol and details view title of misapplied name type is not the same as shown in the type combo element
I do not understand the title of this ticket. The problem to me seems that the selection in the dropdown is stored in... Andreas Müller
11:02 AM bug #10078 (Closed): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
mail ERS:
Wenn man partial misapplication UND pro parte misapplication behalten will (den Unterschied habe ich per...
Katja Luther
05:08 PM bug #10056 (Closed): Make Reference.Accessed deletable in TaxEditor
Works as expected. Andreas Müller
03:54 PM bug #10079: Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
For now, I implemented the date formatting in the way that timezone information is added using the "O" format (https:... Andreas Müller
03:43 PM bug #10079 (In Progress): Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
AM:
beim derzeitigen Upgrade unserer verwendeten Software Libraries fällt uns gerade wieder ein Thema auf die Füße...
Andreas Müller
03:19 PM bug #10079: Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
Andreas Müller wrote in #note-4:
> The formatting seems to take place in name.inc, l.844 calling cdm_api.module.form...
Katja Luther
03:13 PM bug #10079: Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
The formatting seems to take place in name.inc, l.844 calling cdm_api.module.format_datetime() l.449 which calls strt... Andreas Müller
02:53 PM bug #10079: Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
This issue is closely related to #8343 Andreas Müller
02:52 PM bug #10079 (In Progress): Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
With #9359 and #10067 we upgraded hibernate and joda-time/jadira-usertype versions. Maybe also upgrading mysql-connec... Andreas Müller
03:51 PM Revision 4f438db5 (cdm-dataportal): ref #10079 adapt tests to timezone handling
Andreas Müller
03:46 PM Revision 177a39cb (cdm-dataportal): ref #10079 add timezone to (registration) date
Andreas Müller
03:01 PM bug #8343 (In Progress): potential timezone problem in application stack
IMPORTANT:
This task got a new flavour after upgrading some libraries (hibernate, jadira-usertype, mysql-connector, ...
Andreas Müller
02:58 PM bug #8343: potential timezone problem in application stack
Katja Luther wrote in #note-13:
> ... Actually there should be no timezone information in DATETIME??
Are we talki...
Andreas Müller
12:03 PM Revision 898ac44b (taxeditor): ref #10078: sort the terms at the beginning.
Katja Luther
11:37 AM Revision 0614271f (cdm-vaadin): cleanup and fix correct factory method usage
Andreas Müller
11:34 AM Revision be09d413 (cdmlib): cleanup
Andreas Müller
11:15 AM Revision d00d12fa (cdmlib): fix compile error for private MaterialOrMethodEvent constructor
Andreas Müller
11:12 AM Revision 2a7f40e5 (cdmlib): minor
Andreas Müller
10:57 AM Revision c5e9236a (cdmlib): ref #10067 update java-doc for and remove protected access to model constructors where possible in occurrence
Andreas Müller
09:44 AM Revision 08670423 (cdmlib): ref #7666 add test for pro parte MAN formatting
Andreas Müller
09:43 AM Revision a6d0a583 (cdmlib): cleanup
Andreas Müller

06/21/2022

12:04 PM Revision 51b5fd7a (cdmlib): ref #10067 update java-doc for and remove protected access to model constructors where possible
Andreas Müller
12:03 PM Revision 34ab2253 (cdmlib): cleanup
Andreas Müller

06/20/2022

02:46 PM Revision 81b378ac (cdmlib): ref #10076 fix HQL query (remove native)
Andreas Müller
02:43 PM Revision f47729f9 (utis-core): ref #9359 udpate enforcer plugin to 3.1.0. and log4j to 2.17.2 for utis-core
Andreas Müller
02:42 PM Revision 64e30c90 (cdm-webapp): ref #9359 udpate enforcer plugin to 3.1.0. for cdm-webapp
Andreas Müller
02:40 PM Revision bcaa3499 (cdm-vaadin): ref #9359 udpate enforcer plugin to 3.1.0. for vaadin
Andreas Müller
02:40 PM Revision 25ef1ef8 (cdmlib): ref #9359 udpate enforcer plugin to 3.1.0. for cdmlib
Andreas Müller
10:57 AM Revision eec20175 (taxeditor): ref #10033: vocabulary representation should be editable in taxeditor
Katja Luther
10:42 AM Revision a543b013 (taxeditor): TaxonRelationshipTypeInverseContainer should not inherit from DefinedTermBase and use InverseTermWrapper and RelationshipTypeCombo for NameRelType and TaxonRelType
Katja Luther

06/17/2022

08:54 PM Revision 9169740e (cdmlib): ref #10076 fix HQL query (remove native)
Andreas Müller
08:26 PM Revision 5778f462 (cdmlib): ref #10067 update java-doc for HibernateProxyHelper.deproxy (cont.)
Andreas Müller
08:20 PM Revision 3f11d79a (cdmlib): ref #10067 update java-doc for HibernateProxyHelper.deproxy
Andreas Müller
08:14 PM Revision 7d595ebb (taxeditor): ref #3722, ref #10067, ref #8127 remove childnodes nullcheck in ChecklistEditorInput
Andreas Müller
08:06 PM Revision 87d9741a (cdmlib): ref #10067 update java-doc for CdmBase.deproxy
Andreas Müller
08:05 PM Revision 3001e5ad (cdmlib): preliminary fix TaxEditor compile error due to non-protected DefinedTermBase constructor
Andreas Müller
07:46 PM Revision 5d6e72c2 (taxeditor): ref #10067, ref #3722 reenable and adapt readPolytomousKeyDataFromNodes() test
Andreas Müller
07:46 PM Revision f603e01a (taxeditor): fix order of expected and real value in test
Andreas Müller
07:46 PM Revision cbe3c7e4 (taxeditor): cleanup
Andreas Müller
05:26 PM Revision 77c9b8f8 (cdmlib): ref #3722, ref #8127, ref #10067 fully remove sortindex updating and collection null handling workaround from TaxonNode
Andreas Müller
05:23 PM Revision 93185e7b (cdmlib): adapt TaxonNodeService to private Representation constructor
Andreas Müller
04:56 PM Revision 608b3df3 (cdmlib): minor
Andreas Müller
04:54 PM Revision d56308b9 (cdmlib): cleanup and ref #10067 adapt some model constructors javadoc and privacy to bytebuddy
Andreas Müller
04:48 PM Revision 826a35b1 (cdmlib): move AvailableFor to term package
Andreas Müller
04:06 PM Revision 2d7694bf (cdmlib): cleanup
Andreas Müller
01:53 PM Revision 62c42797 (taxeditor): ref #5741: symbol and symbol2 field: add selection box and disable when selected
Katja Luther
09:59 AM Revision f99e2cae (cdmlib): ref #10067 add javassist to dependency management as it is also used by iiif-apis
Andreas Müller

06/16/2022

11:05 PM Revision f5f8c7e7 (cdmlib): ref #10067, ref #10077 remove javassist as bytecode provider from cdmlib (fix pom)
Andreas Müller
10:56 PM Revision 5e6cc79c (cdmlib): minor
Andreas Müller
10:53 PM Revision fbc25777 (taxeditor): cleanup
Andreas Müller
10:46 PM Revision ea704d19 (cdm-vaadin): cleanup
Andreas Müller
10:31 PM Revision da5e6dc7 (cdmlib): cleanup
Andreas Müller
10:29 PM Revision ac512a79 (cdmlib): ref #10067, ref #10077 remove javassist as bytecode provider from cdmlib
Andreas Müller
09:50 PM bug #10075: Fix deserialization exception for bytebuddy base hibernate SerializableProxy
Please review. Andreas Müller
09:50 PM bug #10075: Fix deserialization exception for bytebuddy base hibernate SerializableProxy
Fixed with a workaround by overriding the class net.sf.ehcache.util.PreferredLoaderObjectInputStream which does not c... Andreas Müller
09:47 PM bug #10075 (Resolved): Fix deserialization exception for bytebuddy base hibernate SerializableProxy
Applied in changeset commit:taxeditor|9ee1ca440a5bbe003ed1c34e8abcc9f76ec97533. Andreas Müller
04:50 PM bug #10075: Fix deserialization exception for bytebuddy base hibernate SerializableProxy
it happens in readObject0.readOrdinaryObject.readSerialData.defaultReadFields.readObject0.(TCArray)checkResolve(readA... Andreas Müller
02:51 PM bug #10075 (Closed): Fix deserialization exception for bytebuddy base hibernate SerializableProxy
... this is related to hibernate upgrade to v5.4 (#10067)
This happens when deserializing a org.hibernate.proxy.po...
Andreas Müller
09:47 PM Revision 9ee1ca44 (taxeditor): fix #10075 fix deserialization by overriding PreferredLoaderObjectInputStream from ehcache
Andreas Müller
08:48 PM Revision 15aa7a2c (cdmlib): cleanup
Andreas Müller
08:34 PM task #10077 (New): upgrade ehcache to 3.x
Probably blocked by Spring upgrade to 5.x (#10216).
There is probably a duplicate #9207 which points out size, gro...
Andreas Müller
08:33 PM Revision 35d4b554 (cdmlib): move ehcache from model to service
Andreas Müller
08:30 PM Revision 317ec988 (cdmlib): cleanup
Andreas Müller
05:51 PM Revision f73ae1d9 (cdmlib): ref #10067 add bytecodeprovider handling to CdmApplicationController
Andreas Müller
05:50 PM Revision 107abc23 (cdmlib): cleanup
Andreas Müller
04:42 PM Revision 9fb87bef (cdmlib): ref #10076: fix taxonnodeDto creation for nodes without taxon and parent
Katja Luther
04:40 PM bug #10076: Exception when opening character matrix with classification as root node
This problem appears when the root node of the descriptive dataset is a classification, which has no parent node and ... Katja Luther
04:39 PM bug #10076 (Closed): Exception when opening character matrix with classification as root node
mail Konstantina Koutroumpa:
Dear Katja and Andreas,
I am getting an error when opening the character matrix in...
Katja Luther
11:20 AM bug #8343: potential timezone problem in application stack
Locally I added the timezone to the out put and for http://phycobank.org/100158 the timezone was CEST and for http:/... Katja Luther
09:14 AM bug #8343: potential timezone problem in application stack
Andreas Müller wrote in #note-9:
> Andreas Kohlbecker wrote in #note-8:
> > Andreas Müller wrote in #note-7:
> > > Is...
Katja Luther
08:36 AM feature request #10074 (New): Areas for common names should be a set
mail ERS:
Hallo,
bei der Eingabe von Common Names ist mir gerade aufgefallen, dass es die Möglichkeit geben sol...
Katja Luther

06/15/2022

01:06 PM Revision 3a976bf6 (taxeditor): cleanup
Andreas Müller
12:05 PM Revision 00ee5645 (taxeditor): ref #9359 upgrade maven-antrun-plugin to 3.1.0 in taxeditor
Andreas Müller
12:04 PM Revision 25436749 (taxeditor): cleanup
Andreas Müller

06/14/2022

10:52 PM Revision bedb5de8 (taxeditor): ref #9359 remove old Spring Source repositories from taxeditor cdmlib and local
Andreas Müller
10:48 PM Revision d336a791 (taxeditor): java-doc
Andreas Müller
04:21 PM Revision 3b1474a6 (taxeditor): ref #9359 add javax.annotation to import packages in MANIFEST.MFs
Andreas Müller
04:00 PM Revision 0561a2fc (taxeditor): cleanup
Andreas Müller
03:58 PM Revision df1cedb8 (taxeditor): ref #9359 add commons-collections4 to taxeditor dependencies
Andreas Müller
02:26 PM Revision fe32c5ea (taxeditor): remove store from required bundles in store MANIFEST.MF
Andreas Müller
12:31 PM Revision 907e7ec4 (cdmlib): use tuple class as return type
Katja Luther
09:46 AM Revision ac2536fb (cdmlib): fix hibernate problem with returntype and taxonnodeDto for missing publish flag
Katja Luther
12:03 AM Revision 328d91f0 (taxeditor): ref #9359 remove log4j12 exports from taxeditor.cdmlib MANIFEST.MF
Andreas Müller

06/13/2022

11:55 PM Revision 7872e2e8 (taxeditor): cleanup
Andreas Müller
11:06 PM Revision 926a7e65 (taxeditor): ref #9359 add taxeditor.local log4j2 to gitignore
Andreas Müller
11:03 PM Revision 23a596af (taxeditor): cleanup
Andreas Müller
11:03 PM Revision 62966b18 (taxeditor): fix remotingApplicationContext.xml
Andreas Müller
11:01 PM Revision 002dd8ef (taxeditor): remove whitespace from workbench MANIFEST.MF
Andreas Müller
02:21 PM Revision 4dcfee27 (cdm-dataportal): adapt test
Katja Luther
02:03 PM Revision d0b78a25 (cdm-dataportal): ref #9359 upgrade java dependencies in dataportal (except for selenium)
Andreas Müller
10:46 AM bug #7635: ObjectNotFoundException during delete of synonym and name
Maybe this is a similar problem:
Hallo,
Caryophyllales_spp
Habe bei Sebsebia orthacantha, Synonym Kyphocarpa ort...
Katja Luther
10:26 AM Revision c0497e2d (cdmlib): ref #10071: add statusNote to dto again
Katja Luther

06/10/2022

05:59 PM Revision 90a40d1d (cdmlib): ignore IpniServiceTest again
Andreas Müller
05:09 PM Revision 8866e92d (cdmlib): cleanup
Andreas Müller
05:00 PM Revision 05137c06 (cdmlib): update PresenceAbsenceTerm.csv, remove double whitespaces for invasive terms
Andreas Müller
04:59 PM Revision 33724181 (cdmlib): update lineendings
Andreas Müller
04:21 PM Revision b5f7b1f2 (cdmlib): cleanup
Andreas Müller
04:20 PM Revision f407d3fa (cdmlib): cleanup
Andreas Müller
04:17 PM Revision 01e98b70 (cdmlib): ref #10067, #10070 reassign javassist as bytecode provider in cdmlib
Andreas Müller
03:54 PM Revision 8757f365 (cdmlib): revert changes in taxonnodeDto.noteStatus
Katja Luther
03:51 PM Revision d7b4d78c (cdmlib): revert changes in taxonnodeDto.noteStatus
Katja Luther
03:39 PM Revision 5cf11d96 (cdm-vaadin): remove unnecessary component scan filters
Andreas Müller
03:06 PM Revision e9b0c758 (cdmlib): ref #10073 remove docbkx related files from gitattributes
Andreas Müller
03:06 PM Revision c5af637e (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now (cont 2)
Andreas Müller
02:55 PM task #10073 (New): Remove all docbkx related code/files from cdmlib
... and maybe others. They can be found at {parent}\src\docbkx\ and in parent-pom.
Probably also the changes folde...
Andreas Müller
02:30 PM Revision 3b6301d5 (cdmlib): revert changes to get statusNote
Katja Luther
01:53 PM Revision d4f676c6 (cdmlib): adapt test data
Katja Luther
01:52 PM Revision 60474dec (cdmlib): remove the hsql files again
Katja Luther
01:30 PM Revision a69f97f1 (cdmlib): ref #10071: add statusNote to dto
Katja Luther
01:13 PM Revision 9139d0dd (cdm-vaadin): adapt spring xsd versions in all other applicationContexts
Andreas Müller
01:05 PM Revision 1521fa2e (cdmlib): revert some changes added accidently
Katja Luther
01:00 PM Revision 4df43dd4 (cdmlib): resolve the merge
Katja Luther
12:54 PM Revision cd3e6740 (cdmlib): white space problems
Katja Luther
12:54 PM Revision 6c541cef (cdmlib): adapt tests to added description
Katja Luther
12:36 PM Revision 40dd7cc6 (cdmlib): cleanup
Andreas Müller
12:26 PM Revision b1d8767d (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now (cont)
Andreas Müller
12:22 PM Revision 6545b1d5 (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now
Andreas Müller
12:16 PM Revision 475d237f (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now
Andreas Müller
11:45 AM Revision db707134 (cdmlib): ref #10071: additional constructor and test added
Katja Luther
11:43 AM Revision 6e0c944e (cdmlib): ref #9359 temporarily neglect LoggingConfigurer
Andreas Müller
11:21 AM Revision 4f248b8f (cdm-vaadin): adapt spring xsd versions in applicationContext-service-integration.xml
Andreas Müller
11:06 AM Revision 2506b246 (cdmlib): cleanup
Andreas Müller
11:04 AM Revision 80d999e5 (cdmlib): remove h2-datasource.xml as it is not used anymore
Andreas Müller
10:56 AM Revision 2d405aee (cdmlib): remove applicationContext.xml from remote test base directory
Andreas Müller
10:45 AM Revision 56dd942a (cdmlib): remove all java and some licence/readme from gitattributes
Andreas Müller
10:10 AM Revision a23f2969 (cdm-vaadin): adapt spring xsd versions in cdm-vaadin-servlet.xml
Andreas Müller
08:09 AM Revision ac9cae76 (cdmlib): ref #10067 byteCodeProvider for HibernateConfiguration and factory methods
Andreas Müller

06/09/2022

10:16 PM Revision 84808e22 (cdmlib): ref #9359 add exclusions to javax.mail and jena-tdl
Andreas Müller
09:39 PM Revision 222315aa (taxeditor): ref #9359 adapt taxeditor.local to log4j 2
Andreas Müller
07:32 PM Revision 661705c1 (taxeditor): ref #9359 fix Logger handling in some classes for which replace did not work (cont.)
Andreas Müller
07:25 PM Revision ba10d0e9 (taxeditor): ref #9359 fix Logger handling in some classes for which replace did not work
Andreas Müller
07:16 PM Revision 94de228d (taxeditor): minor
Andreas Müller
07:15 PM Revision 2bba4a19 (taxeditor): ref #9359 import log4j2 in some TaxEditor projects (fix)
Andreas Müller
07:12 PM Revision 9a6b2310 (taxeditor): ref #9359 import log4j2 in some TaxEditor projects
Andreas Müller
06:27 PM Revision d83fc07f (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (adapt workbench to new package)(cont)
Andreas Müller
06:16 PM Revision db825808 (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (add exported packages)
Andreas Müller
06:09 PM Revision e0ef5fb8 (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (cont)
Andreas Müller
06:08 PM Revision 7de7dd91 (taxeditor): cleanup
Andreas Müller
03:34 PM Revision 50935afd (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (adapt workbench to new package)
Andreas Müller
03:27 PM Revision f274f083 (taxeditor): ref #9359 upgrade TaxEditor to log4j2
Andreas Müller
02:45 PM Revision ec602490 (taxeditor): ref #9359 adapt log4j handling in TaxEditor (cont.)
Andreas Müller
01:56 PM Revision f97eecfd (taxeditor): ref #9359 adapt log4j handling in TaxEditor (cont.)
Andreas Müller
01:51 PM Revision b6f5d1a6 (cdmlib): ref #9359 add dependency management for error_prone_annotations
Andreas Müller
01:48 PM Revision 47f89b8f (taxeditor): ref #9359 adapt log4j handling in TaxEditor
Andreas Müller
01:37 PM Revision 15daf02c (taxeditor): ref #9359 update slf4j logging in TaxEditor
Andreas Müller
01:31 PM Revision 13307324 (cdmlib): minor
Andreas Müller
01:30 PM Revision 1feff2df (cdmlib): ref #9359 upgrade spring-security-oauth2 to latest version
Andreas Müller
01:25 PM Revision eadd0f35 (cdmlib): ref #9359 upgrade docx4j to latest version
Andreas Müller
01:23 PM Revision a820701f (cdmlib): ref #9359 upgrade plexus-utils to latest version
Andreas Müller
01:22 PM Revision e8694614 (cdmlib): ref #9359 upgrade Saxon-HE to latest version
Andreas Müller
01:21 PM Revision 94645f2d (cdmlib): ref #9359 replace slf4j-log4j12 by slf4j-reload4j
Andreas Müller
01:12 PM Revision 12c174d5 (cdmlib): ref #9359, ref #10072 some adaptations for log4j2
Andreas Müller
12:40 PM task #10072 (Closed): Upgrade fully to log4j2
We already upgraded to log4j2 in #9359.
~~However, the class eu.etaxonomy.cdm.opt.config.LoggingConfigurer is not ...
Andreas Müller
11:02 AM Revision 2b956f99 (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib (cont.)
Andreas Müller
10:23 AM Revision c7d418c8 (cdmlib): ref #9359 upgrade docx4j to v8 and manage versions for plexus-classworlds and plexus-component-annotations
Andreas Müller
10:15 AM Revision 23de68fc (cdmlib): ref #9359 upgrade cdmlib to log4j 2
Andreas Müller

06/08/2022

03:02 PM Revision 427378b1 (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib (cont.)
Andreas Müller
02:59 PM Revision f21c829a (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib (cont.)
Andreas Müller
02:52 PM Revision c07f06a0 (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib
Andreas Müller
02:39 PM Revision 9628a4a5 (taxeditor): #10009 add antlr again
Andreas Müller
01:55 PM Revision 7829b055 (cdmlib): ref #10067 change back bytecode provider to javassist in hibernate.cfg.xmls
Andreas Müller
01:53 PM Revision d8a4b95f (taxeditor): #10009 add lucene-core again
Andreas Müller
01:12 PM Revision 1c648453 (taxeditor): #10009 add hibernate-eners again
Andreas Müller
12:59 PM Revision 5a9cce4d (cdmlib): cleanup
Andreas Müller
12:59 PM Revision 3a1dbf7c (cdmlib): ref #10067 revert bytecode provider in hibernate.cfg.xmls
Andreas Müller
11:54 AM Revision 27dafab6 (cdmlib): minor
Katja Luther
10:57 AM bug #10071: TaxonNodeDtos should be created directly not from taxon objects
There were some follow up fixes, because the taxonnode dto created with SortableTaxonNodeQueryResult was not complete... Katja Luther
10:28 AM Revision e3d5927a (cdm-dataportal): minor
Katja Luther
09:45 AM Revision 17e31533 (cdmlib): ref #10071: add node status to dto and implemented some tests
Katja Luther

06/07/2022

05:42 PM Revision 6103abfd (taxeditor): ref #9359 update surefire plugin to 3.0.0-M7 in taxeditor (cont.)
Andreas Müller
05:37 PM Revision b84468fb (cdmlib): fix NPEs in DTO creation
Katja Luther
03:08 PM Revision efa3824e (cdmlib): taxon node status needs to be added to the dto
Katja Luther
02:39 PM Revision 02a32271 (cdm-dataportal): adapt test
Katja Luther
01:19 PM bug #10033 (In Progress): For new FeatureTree only uuid is shown in dataportal
Katja Luther
01:19 PM bug #10033 (Resolved): For new FeatureTree only uuid is shown in dataportal
We need to adapt the taxeditor implementation, so that not the titlecache but the representation is used. Katja Luther
12:36 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
Terms contain an termrepresentation object, this is empty for terms/termcollections created in taxeditor. As a first ... Katja Luther
12:33 PM Revision 5f4a411c (cdmlib): ref #10033: if term has no representation use titlecache in termrepresentation_L10n
Katja Luther
10:18 AM Revision f98660c3 (taxeditor): ref #9359 update surefire plugin to 3.0.0-M7 in taxeditor
Andreas Müller
09:52 AM Revision e629eadb (cdm-server): ref #9359 update surefire plugin to 3.0.0-M7 in cdm-server
Andreas Müller
09:50 AM Revision f05af282 (cdm-vaadin): ref #9359 update surefire plugin to 3.0.0-M7 in vaadin
Andreas Müller
09:49 AM Revision 7500a7a4 (cdmlib): ref #9359 update surefire plugin to 3.0.0-M7 in cdmlib
Andreas Müller
 

Also available in: Atom