Project

General

Profile

Activity

From 05/12/2022 to 06/10/2022

06/10/2022

05:59 PM Revision 90a40d1d (cdmlib): ignore IpniServiceTest again
Andreas Müller
05:09 PM Revision 8866e92d (cdmlib): cleanup
Andreas Müller
05:00 PM Revision 05137c06 (cdmlib): update PresenceAbsenceTerm.csv, remove double whitespaces for invasive terms
Andreas Müller
04:59 PM Revision 33724181 (cdmlib): update lineendings
Andreas Müller
04:21 PM Revision b5f7b1f2 (cdmlib): cleanup
Andreas Müller
04:20 PM Revision f407d3fa (cdmlib): cleanup
Andreas Müller
04:17 PM Revision 01e98b70 (cdmlib): ref #10067, #10070 reassign javassist as bytecode provider in cdmlib
Andreas Müller
03:54 PM Revision 8757f365 (cdmlib): revert changes in taxonnodeDto.noteStatus
Katja Luther
03:51 PM Revision d7b4d78c (cdmlib): revert changes in taxonnodeDto.noteStatus
Katja Luther
03:39 PM Revision 5cf11d96 (cdm-vaadin): remove unnecessary component scan filters
Andreas Müller
03:06 PM Revision e9b0c758 (cdmlib): ref #10073 remove docbkx related files from gitattributes
Andreas Müller
03:06 PM Revision c5af637e (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now (cont 2)
Andreas Müller
02:55 PM task #10073 (New): Remove all docbkx related code/files from cdmlib
... and maybe others. They can be found at {parent}\src\docbkx\ and in parent-pom.
Probably also the changes folde...
Andreas Müller
02:30 PM Revision 3b6301d5 (cdmlib): revert changes to get statusNote
Katja Luther
01:53 PM Revision d4f676c6 (cdmlib): adapt test data
Katja Luther
01:52 PM Revision 60474dec (cdmlib): remove the hsql files again
Katja Luther
01:30 PM Revision a69f97f1 (cdmlib): ref #10071: add statusNote to dto
Katja Luther
01:13 PM Revision 9139d0dd (cdm-vaadin): adapt spring xsd versions in all other applicationContexts
Andreas Müller
01:05 PM Revision 1521fa2e (cdmlib): revert some changes added accidently
Katja Luther
01:00 PM Revision 4df43dd4 (cdmlib): resolve the merge
Katja Luther
12:54 PM Revision cd3e6740 (cdmlib): white space problems
Katja Luther
12:54 PM Revision 6c541cef (cdmlib): adapt tests to added description
Katja Luther
12:36 PM Revision 40dd7cc6 (cdmlib): cleanup
Andreas Müller
12:26 PM Revision b1d8767d (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now (cont)
Andreas Müller
12:22 PM Revision 6545b1d5 (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now
Andreas Müller
12:16 PM Revision 475d237f (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now
Andreas Müller
11:45 AM Revision db707134 (cdmlib): ref #10071: additional constructor and test added
Katja Luther
11:43 AM Revision 6e0c944e (cdmlib): ref #9359 temporarily neglect LoggingConfigurer
Andreas Müller
11:21 AM Revision 4f248b8f (cdm-vaadin): adapt spring xsd versions in applicationContext-service-integration.xml
Andreas Müller
11:06 AM Revision 2506b246 (cdmlib): cleanup
Andreas Müller
11:04 AM Revision 80d999e5 (cdmlib): remove h2-datasource.xml as it is not used anymore
Andreas Müller
10:56 AM Revision 2d405aee (cdmlib): remove applicationContext.xml from remote test base directory
Andreas Müller
10:45 AM Revision 56dd942a (cdmlib): remove all java and some licence/readme from gitattributes
Andreas Müller
10:10 AM Revision a23f2969 (cdm-vaadin): adapt spring xsd versions in cdm-vaadin-servlet.xml
Andreas Müller
08:09 AM Revision ac9cae76 (cdmlib): ref #10067 byteCodeProvider for HibernateConfiguration and factory methods
Andreas Müller

06/09/2022

10:16 PM Revision 84808e22 (cdmlib): ref #9359 add exclusions to javax.mail and jena-tdl
Andreas Müller
09:39 PM Revision 222315aa (taxeditor): ref #9359 adapt taxeditor.local to log4j 2
Andreas Müller
07:32 PM Revision 661705c1 (taxeditor): ref #9359 fix Logger handling in some classes for which replace did not work (cont.)
Andreas Müller
07:25 PM Revision ba10d0e9 (taxeditor): ref #9359 fix Logger handling in some classes for which replace did not work
Andreas Müller
07:16 PM Revision 94de228d (taxeditor): minor
Andreas Müller
07:15 PM Revision 2bba4a19 (taxeditor): ref #9359 import log4j2 in some TaxEditor projects (fix)
Andreas Müller
07:12 PM Revision 9a6b2310 (taxeditor): ref #9359 import log4j2 in some TaxEditor projects
Andreas Müller
06:27 PM Revision d83fc07f (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (adapt workbench to new package)(cont)
Andreas Müller
06:16 PM Revision db825808 (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (add exported packages)
Andreas Müller
06:09 PM Revision e0ef5fb8 (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (cont)
Andreas Müller
06:08 PM Revision 7de7dd91 (taxeditor): cleanup
Andreas Müller
03:34 PM Revision 50935afd (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (adapt workbench to new package)
Andreas Müller
03:27 PM Revision f274f083 (taxeditor): ref #9359 upgrade TaxEditor to log4j2
Andreas Müller
02:45 PM Revision ec602490 (taxeditor): ref #9359 adapt log4j handling in TaxEditor (cont.)
Andreas Müller
01:56 PM Revision f97eecfd (taxeditor): ref #9359 adapt log4j handling in TaxEditor (cont.)
Andreas Müller
01:51 PM Revision b6f5d1a6 (cdmlib): ref #9359 add dependency management for error_prone_annotations
Andreas Müller
01:48 PM Revision 47f89b8f (taxeditor): ref #9359 adapt log4j handling in TaxEditor
Andreas Müller
01:37 PM Revision 15daf02c (taxeditor): ref #9359 update slf4j logging in TaxEditor
Andreas Müller
01:31 PM Revision 13307324 (cdmlib): minor
Andreas Müller
01:30 PM Revision 1feff2df (cdmlib): ref #9359 upgrade spring-security-oauth2 to latest version
Andreas Müller
01:25 PM Revision eadd0f35 (cdmlib): ref #9359 upgrade docx4j to latest version
Andreas Müller
01:23 PM Revision a820701f (cdmlib): ref #9359 upgrade plexus-utils to latest version
Andreas Müller
01:22 PM Revision e8694614 (cdmlib): ref #9359 upgrade Saxon-HE to latest version
Andreas Müller
01:21 PM Revision 94645f2d (cdmlib): ref #9359 replace slf4j-log4j12 by slf4j-reload4j
Andreas Müller
01:12 PM Revision 12c174d5 (cdmlib): ref #9359, ref #10072 some adaptations for log4j2
Andreas Müller
12:40 PM task #10072 (Closed): Upgrade fully to log4j2
We already upgraded to log4j2 in #9359.
~~However, the class eu.etaxonomy.cdm.opt.config.LoggingConfigurer is not ...
Andreas Müller
11:02 AM Revision 2b956f99 (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib (cont.)
Andreas Müller
10:23 AM Revision c7d418c8 (cdmlib): ref #9359 upgrade docx4j to v8 and manage versions for plexus-classworlds and plexus-component-annotations
Andreas Müller
10:15 AM Revision 23de68fc (cdmlib): ref #9359 upgrade cdmlib to log4j 2
Andreas Müller

06/08/2022

03:02 PM Revision 427378b1 (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib (cont.)
Andreas Müller
02:59 PM Revision f21c829a (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib (cont.)
Andreas Müller
02:52 PM Revision c07f06a0 (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib
Andreas Müller
02:39 PM Revision 9628a4a5 (taxeditor): #10009 add antlr again
Andreas Müller
01:55 PM Revision 7829b055 (cdmlib): ref #10067 change back bytecode provider to javassist in hibernate.cfg.xmls
Andreas Müller
01:53 PM Revision d8a4b95f (taxeditor): #10009 add lucene-core again
Andreas Müller
01:12 PM Revision 1c648453 (taxeditor): #10009 add hibernate-eners again
Andreas Müller
12:59 PM Revision 5a9cce4d (cdmlib): cleanup
Andreas Müller
12:59 PM Revision 3a1dbf7c (cdmlib): ref #10067 revert bytecode provider in hibernate.cfg.xmls
Andreas Müller
11:54 AM Revision 27dafab6 (cdmlib): minor
Katja Luther
10:57 AM bug #10071: TaxonNodeDtos should be created directly not from taxon objects
There were some follow up fixes, because the taxonnode dto created with SortableTaxonNodeQueryResult was not complete... Katja Luther
10:28 AM Revision e3d5927a (cdm-dataportal): minor
Katja Luther
09:45 AM Revision 17e31533 (cdmlib): ref #10071: add node status to dto and implemented some tests
Katja Luther

06/07/2022

05:42 PM Revision 6103abfd (taxeditor): ref #9359 update surefire plugin to 3.0.0-M7 in taxeditor (cont.)
Andreas Müller
05:37 PM Revision b84468fb (cdmlib): fix NPEs in DTO creation
Katja Luther
03:08 PM Revision efa3824e (cdmlib): taxon node status needs to be added to the dto
Katja Luther
02:39 PM Revision 02a32271 (cdm-dataportal): adapt test
Katja Luther
01:19 PM bug #10033 (In Progress): For new FeatureTree only uuid is shown in dataportal
Katja Luther
01:19 PM bug #10033 (Resolved): For new FeatureTree only uuid is shown in dataportal
We need to adapt the taxeditor implementation, so that not the titlecache but the representation is used. Katja Luther
12:36 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
Terms contain an termrepresentation object, this is empty for terms/termcollections created in taxeditor. As a first ... Katja Luther
12:33 PM Revision 5f4a411c (cdmlib): ref #10033: if term has no representation use titlecache in termrepresentation_L10n
Katja Luther
10:18 AM Revision f98660c3 (taxeditor): ref #9359 update surefire plugin to 3.0.0-M7 in taxeditor
Andreas Müller
09:52 AM Revision e629eadb (cdm-server): ref #9359 update surefire plugin to 3.0.0-M7 in cdm-server
Andreas Müller
09:50 AM Revision f05af282 (cdm-vaadin): ref #9359 update surefire plugin to 3.0.0-M7 in vaadin
Andreas Müller
09:49 AM Revision 7500a7a4 (cdmlib): ref #9359 update surefire plugin to 3.0.0-M7 in cdmlib
Andreas Müller

06/03/2022

05:50 PM Revision bfb84c1f (taxeditor): ref #9359 revert ehcache in taxeditor
Andreas Müller
03:45 PM Revision cc5425b9 (cdmlib): ref #9359 revert ehcache
Andreas Müller
03:45 PM Revision f12f1234 (cdmlib): minor
Andreas Müller
03:45 PM Revision 2f048780 (cdmlib): ref #10067 try to use javassit as bytecode provider
Andreas Müller
03:31 PM Revision 37a35ef6 (taxeditor): cleanup
Andreas Müller
02:35 PM Revision 29ce7c87 (cdmlib): ref #10071: create taxonnodeDTOs, add classification uuid
Katja Luther

06/02/2022

02:33 PM bug #10034 (Resolved): Flat feature tree throws exception
Now moving unsaved nodes is handled correctly. Please reviw. Katja Luther
02:30 PM Revision 46fc1532 (taxeditor): ref #10034: better handling of messages
Katja Luther
09:41 AM bug #10071 (In Progress): TaxonNodeDtos should be created directly not from taxon objects
This is done for the search of the taxonnodes for a specific taxon and also for the search in a subtree. Katja Luther
08:50 AM bug #10071 (Closed): TaxonNodeDtos should be created directly not from taxon objects
The webservice getting the taxonnodeDtos for a taxon, first gets the taxon object and then creates the Dtos for the t... Katja Luther
09:34 AM Revision d9740b37 (cdmlib): ref #10071: create taxonnodeDTOs also for a subtree
Katja Luther
08:51 AM Revision 23b979d9 (cdmlib): ref #10071: create taxonnodeDTOs directly from taxon uuid
Katja Luther

06/01/2022

10:57 PM Revision 5cef85cb (taxeditor): #10009 add xml-apisand commons-pool and remove others from bin.includes
Andreas Müller
08:09 PM Revision e0a68352 (taxeditor): #10009 adapt c3p0 version number
Andreas Müller
05:26 PM Revision cd817281 (taxeditor): #10009 add c3p0 and other DB drivers
Andreas Müller
04:06 PM Revision b00a278f (cdmlib): ref #10067 add bytebuddy check to ProxyUtils
Andreas Müller
04:05 PM Revision 90d49e1d (cdmlib): cleanup
Andreas Müller
02:40 PM Revision 909ec7f3 (taxeditor): #9359, #10009 adding jackson-annotations and jboss-transaction-api_1.2_spec required for login and transactions
Andreas Müller
01:49 PM Revision 1c2181be (cdmlib): create taxonnodeDto directly with taxonUuid - continue
Katja Luther
01:47 PM Revision 1a9f6e9d (cdmlib): create taxonnodeDto directly with taxonUuid
Katja Luther
01:46 PM Revision 76701f6e (taxeditor): #9359, #10009 remove slf4j-log4j12
Andreas Müller
01:40 PM Revision 77fcaa65 (taxeditor): #9359, #10009 remove bean-utils from taxeditor.cdmlib (still exists in molecular.lib)
Andreas Müller
01:33 PM Revision 2e5e28a6 (taxeditor): #9359, #10009 update slf4j-log4j12 version in case we still need it
Andreas Müller
01:28 PM Revision 8f7929b5 (taxeditor): ref #10067, #10009 remove hibernate-jpa-2.1-api
Andreas Müller
01:23 PM Revision 112f74db (taxeditor): #10009 preliminary remove usertype.core
Andreas Müller
01:23 PM Revision 7c4f7d92 (taxeditor): move byte-buddy
Andreas Müller
01:20 PM Revision 2e76ec21 (cdmlib): ref #10067, ref #3722 add parent.childNodes to taxonNode property path to allow sortindex computation
* should be preliminary Andreas Müller
01:08 PM Revision b121cf83 (taxeditor): #10009 remove commons-collections4
Andreas Müller
12:54 PM Revision 7f99924f (cdmlib): ref #9359 removed duplicated manage version of jcl-over-slf4j in cdmlib
Andreas Müller
12:53 PM Revision 55c15c2d (cdmlib): ref #10067 remove direct dependencies to javassist and hibernate-jpa-2.1 from cdmlib-persistence
Andreas Müller
12:30 PM Revision 87a6f8ae (taxeditor): cleanup
Andreas Müller
12:27 PM Revision 6dbe2e69 (taxeditor): ref #10067, #9359, #10009 ignore CdmEntitySessionAwareTest.readPolytomousKeyDataFromNodes preliminary to allow full build
Andreas Müller
11:55 AM Revision 29655c12 (cdmlib): ref #10067 add byte-buddy dependency management
Andreas Müller
11:52 AM Revision f4a1eae4 (taxeditor): ref #10067, #10009 add byte-buddy (replaces javassist in hibernate)
Andreas Müller
11:51 AM Revision 82fc1145 (taxeditor): ref #10067, #10009 remove javassist (not used by hibernate anymore)
Andreas Müller
11:32 AM Revision db27d783 (taxeditor): #10009 remove spring-security-remoting again as it was not the reason
Andreas Müller
11:30 AM Revision bdf38d94 (taxeditor): ref #10067 adapt AbstractPersistentCollection serialVersionUID
Andreas Müller
11:25 AM Revision 8bd58569 (taxeditor): #10009 add spring-security-remoting again to try to solve serialVersionUID issue
Andreas Müller
11:06 AM Revision 06a1c881 (taxeditor): #10009 remove empty lines from bin.includes
Andreas Müller
10:53 AM Revision adc61987 (taxeditor): ref #10067, #9359, #10009 adapt taxeditor to new jakarta validation package
Andreas Müller
10:39 AM Revision 88d6cebc (taxeditor): ref #10067, #9359, #10009 remove not used entries in bin.includes and fix copying of jadira usertypes
Andreas Müller
10:29 AM Revision 0f6841be (taxeditor): ref #10067, #9359, #10009 adapt dependencies in taxeditor to latest versions in cdmlib and remove all dependencies not needed directly or for export
* this version will not work yet Andreas Müller
10:29 AM Revision 5056c949 (taxeditor): use static method in Conditions as suggested
Andreas Müller
10:29 AM Revision 9da105d2 (taxeditor): cleanup
Andreas Müller
10:25 AM Revision 2629c0c7 (cdmlib): ref #9359 manage version of jcl-over-slf4j in cdmlib
Andreas Müller
10:20 AM Revision af8867dd (cdmlib): ref #9359 upgrade xmlgraphics-fop and -commons to latest version in cdmlib
Andreas Müller
10:10 AM Revision 84a352cb (cdmlib): ref #9359 upgrade slf4j-xxx, commons-imaging, xercesImpl, hibernate-commons-annotations, javassist and jakarta.validation-api to latest version in cdmlib
Andreas Müller
09:09 AM Revision 428e9ed2 (taxeditor): ref #10034: check dirty nodes at the beginning of move operation.
Katja Luther
01:58 AM bug #10034 (In Progress): Flat feature tree throws exception
Andreas Müller wrote in #note-2:
> The problem does only seem to appear if you try to move a node before you save. I...
Andreas Müller
12:53 AM Revision a7a4b973 (cdmlib): cleanup
Andreas Müller
12:00 AM task #10009 (In Progress): Cleanup dependencies in TaxEditor
Andreas Müller

05/31/2022

11:43 PM Revision e20f99e1 (taxeditor): ref #10067 add remoting specific parts to AbstractLazyInitializer again in taxeditor
Andreas Müller
11:30 PM Revision 58696c35 (taxeditor): ref #10067 adapt AbstractLazyInitializer to new hibernate version in taxeditor
Andreas Müller
11:28 PM Revision 59695a56 (taxeditor): cleanup
Andreas Müller
11:27 PM Revision 2760b7b4 (taxeditor): ref #10067 adapt AbstractPersistentCollection to new hibernate version in taxeditor
Andreas Müller
10:55 PM Revision cbadc5e7 (cdmlib): ref #9359 javadoc
Andreas Müller
10:53 PM Revision 99c1e469 (cdmlib): ref #9359 downgrade jboss-logging version to 3.4.3 as 3.5.0 requires java11 in cdmlib
Andreas Müller
10:40 PM Revision 57863fba (cdmlib): ref #9359 add dependency management for jboss-logging-processor in cdmlib
Andreas Müller
10:35 PM Revision 9805efb5 (cdmlib): ref #9359 revert removing jboss-logging-annotations in cdmlib
Andreas Müller
10:21 PM Revision 28218fda (cdmlib): ref #9359 upgrade jboss-logging to latest version and remove jboss-logging-annotations in cdmlib
Andreas Müller
09:47 PM Revision fe29288a (taxeditor): cleanup
Andreas Müller
09:36 PM Revision 383098c0 (taxeditor): cleanup
Andreas Müller
09:25 PM Revision d7670e34 (cdmlib): ref #9359 javadoc
Andreas Müller
09:25 PM Revision b86b1f35 (cdmlib): ref #9359 upgrade net.sf.ehcache/ehcache and org.json/json to latest version in cdmlib
Andreas Müller
06:12 PM Revision 159e7b25 (taxeditor): cleanup
Andreas Müller
03:38 PM Revision 73054571 (cdm-vaadin): ref #10067 adapt vaadin to new preference lookup handling
Andreas Müller
03:36 PM Revision 29f43e42 (cdm-vaadin): cleanup
Andreas Müller
03:32 PM Revision 0053a70e (taxeditor): minor
Andreas Müller
03:28 PM Revision c46c3b29 (cdmlib): ref #9359 upgrade xtream version 1.4.14->1.4.19 and remove xmlpull
Andreas Müller
03:17 PM Revision 88dee2f2 (cdmlib): ref #9359 downgrade xmlpull:xmlpull to 1.1.3.1 as 1.2.0 is only available in the JBoss repo which is currently switched off
Andreas Müller
03:16 PM Revision c240e90c (cdmlib): update metadata in parent pom
Andreas Müller
03:02 PM Revision d7905be5 (taxeditor): cleanup
Andreas Müller
03:00 PM Revision c1537fe2 (taxeditor): ref #10067 fix cacheStrategy compile issue in taxeditor
Andreas Müller
02:43 PM bug #10034: Flat feature tree throws exception
Could not reproduce this problem with the actual nightly build.
Steps I tried to reproduce the problem:
* creat...
Katja Luther
02:12 PM Revision 519bff7b (cdmlib): ref #10067 replace deprecated hibernate validation NotEmpty by JPA version
Andreas Müller
01:51 PM Revision 533864b4 (taxeditor): ref #9359 cleanup gitignore
Andreas Müller
01:51 PM Revision cea8edf6 (taxeditor): ref #9359 update joda-time and mysql-connector-java to latest version in taxeditor
Andreas Müller
01:51 PM Revision a10b0a4e (taxeditor): ref #9359 update itextpdf to latest version in taxeditor
Andreas Müller
01:51 PM Revision 9e7380cc (taxeditor): ref #9359 update postgresql version to 42.3.6 in taxeditor (cont.)
Andreas Müller
01:51 PM Revision 9f485921 (taxeditor): ref #9359 update taxeditor to latest jackson version
Andreas Müller
01:51 PM Revision 502edc8a (taxeditor): ref #9359 update postgresql version to 42.3.6 in taxeditor
Andreas Müller
01:19 PM Revision a4de9dec (cdmlib): cleanup
Andreas Müller
01:12 PM feature request #10070 (New): Upgrade to hibernate 6+
Before start upgrade to hibernate 5.6.x if not yet done. There is still a problem with the TaxonGraphHibernateListene... Andreas Müller
01:08 PM Revision c3190812 (cdmlib): cleanup some base DAOs (rename, remove @Repository, ...)
Andreas Müller
12:44 PM bug #10056 (Resolved): Make Reference.Accessed deletable in TaxEditor
Added a delete button, please review. Katja Luther
12:43 PM Revision ec8df5bb (taxeditor): ref #10056: add delete button to date element
Katja Luther
12:14 PM Revision 0d59864d (cdmlib): cleanup
Andreas Müller
11:57 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
please review. Katja Luther
11:57 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
The path to the name needs to be processed by url(), then the correct link is used. Katja Luther
11:56 AM bug #10059 (Resolved): Link for stored under and identification on specimen page does not work correctly
Applied in changeset commit:cdm-dataportal|c90f5440175074c6a350ad24fdaba0c0b6b9ae74. Katja Luther
10:22 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
This problem occurs because there is an element data-cdm-render-path containing the actual render path and this is us... Katja Luther
11:57 AM Revision 89c7717e (cdmlib): cleanup
Andreas Müller
11:56 AM Revision 9fd2eb7e (cdmlib): ref #9359 update joda-time, mariadb-java-client and mysql-connector-java to latest version in cdmlib
Andreas Müller
11:56 AM Revision c90f5440 (cdm-dataportal): fix #10059: the url needs to be processed with url()
Katja Luther
11:36 AM Revision ce43a73f (cdmlib): ref #9359 update itextpdf to latest version in cdmlib
Andreas Müller
11:31 AM Revision 92c60bc1 (cdmlib): ref #9359 update jackson and guava to latest version in cdmlib
Andreas Müller
11:12 AM Revision 8c468c66 (cdmlib): ref #10067 adapt getAllPersistedClasses() to new hibernate metadata handling
Andreas Müller
10:43 AM Revision 10634f7c (cdm-dataportal): ref #10059: remove render path
Katja Luther
10:16 AM Revision b220af7c (cdmlib): ref #9359 remove JBoss and apache incubating repository
Andreas Müller
10:13 AM Revision f9e2340e (cdmlib): ref #9359, #10067 upgrade pom to hibernate 5.4.33,hibernate-validator 6.2.3 and hibernate-search 5.11.10
Andreas Müller
08:28 AM task #10067 (In Progress): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
Andreas Müller
08:16 AM feature request #10069 (New): Upgrade hibernate search and lucene to hs6+ and lucene 8+
Lucene 6+ seems to require hs6+ as there is a strange dependency on org.apache.lucene.document.Field.Index and ...Fie... Andreas Müller
02:54 AM Revision f5a9c13f (cdmlib): ref #9359, #10067 add lucene-sandbox
Andreas Müller
02:52 AM Revision a95fbfcc (cdmlib): ref #9359, #10067 prepare Lucene6+ double queries
Andreas Müller
02:47 AM Revision 6155fd74 (cdmlib): ref #9359, #10067 remove SortFieldOptions
Andreas Müller
02:46 AM Revision 77f0d8ee (cdmlib): ref #9359, #10067 remove most index boosts
Andreas Müller

05/30/2022

11:56 PM Revision 273ff5e1 (cdmlib): cleanup
Andreas Müller
10:59 PM bug #5477 (Resolved): lucene index not updated in all cases after Taxon.addMisappliedName
Was not fully fixed yet. Problem reoccurred after upgrading to hibernate-search 5.7.3. "ContainedIn" was still missin... Andreas Müller
10:56 PM Revision 44e77359 (cdmlib): ref #7487 fix fulltext search for proparten MAN and partial MAN+synonyms
Andreas Müller
10:51 PM Revision 74b8cb5c (cdmlib): cleanup
Andreas Müller
10:47 PM bug #7487 (Resolved): Full text misapplied name search with area filter uses fixed relation type uuid
Solved by adding also proparte and partial MAN and partial synonym relationship type subqueries. Also related to fina... Andreas Müller
10:01 PM Revision e0a87ccd (cdmlib): ref #7487 adapt test
Andreas Müller
09:59 PM Revision 384235ed (cdmlib): ref #10067, ref #5477 add containedIn to relatedFrom and relatedTo to adapt to hibernate search 5.7.3
Andreas Müller
09:56 PM Revision 127e8d62 (cdmlib): cleanup
Andreas Müller
01:55 PM Revision de68a697 (cdmlib): minor
Andreas Müller
11:54 AM bug #10068 (Closed): Changing focus to accepted taxon does not work
After opening a the name editor with focus on a synonym, the change of focus to the accepted taxon does not work, res... Katja Luther
11:27 AM bug #10060: Exception when adding kind-of-unit information to a field unit
Katja Luther wrote in #note-1:
> I think we should not allow to set a kind of unit for a field unit, so I would remo...
Katja Luther
09:18 AM bug #10060 (In Progress): Exception when adding kind-of-unit information to a field unit
I think we should not allow to set a kind of unit for a field unit, so I would remove the possibility to edit the kin... Katja Luther
10:20 AM Revision be473233 (cdmlib): cleanup
Andreas Müller

05/25/2022

03:05 PM Revision 40fc8ef7 (cdmlib): ref #9359 update postgresql version to 42.3.6 in cdmlib
Andreas Müller
01:39 PM Revision 0eeb74cb (cdmlib): ref #10067 update to hibernate 5.3 (cont.)
Andreas Müller
01:38 PM Revision 8b4d3b05 (cdmlib): ref #10067 update to hibernate-search 5.9
Andreas Müller
01:37 PM Revision 1a2ac5f4 (cdmlib): ref #10067 update to hibernate 5.3
Andreas Müller
12:56 PM Revision 009442e0 (cdmlib): cleanup
Andreas Müller
10:49 AM task #3722 (Resolved): Using @OrderColumn does not work in trees
Probably solved, still needs intensive testing and code cleanup. Andreas Müller
10:39 AM Revision bfab2edd (cdmlib): cleanup
Andreas Müller
10:39 AM Revision 857528e8 (cdmlib): ref #10067 improve handling of CdmPreferenceLookup (now ...Cache) to allow running with >1 entity managers (e.g. during maven tests)
Andreas Müller
10:29 AM feature request #7861 (In Progress): TaxonGraphHibernateListener: inject the ITaxonGraphDao into TaxonGraphBeforeTransactionCompleteProcess
A somehow similar solution was implemented in 8c6b6172722d to adapt the TaxonGraphBeforeTransactionCompleteProcess to... Andreas Müller
10:23 AM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Andreas Kohlbecker wrote in #note-10:
> "Session is closed!"-problem is solved now.
This fix was only a workaroun...
Andreas Müller

05/24/2022

07:44 PM Revision 56edf3ba (cdmlib): ref #10067, ref #3722, ref #8127 adapt handling of sortIndex after upgrade to hibernate5.2
Andreas Müller
07:06 PM Revision 665d2a60 (cdmlib): cleanup
Andreas Müller
08:58 AM Revision adabc933 (cdmlib): cleanup
Andreas Müller

05/23/2022

03:56 PM task #3722 (In Progress): Using @OrderColumn does not work in trees
Andreas Müller
10:57 AM task #3722: Using @OrderColumn does not work in trees
sortIndex needs to be handled newly in hibernate5.2 so we can try to handle this ticket, too. Andreas Müller
03:55 PM task #8127 (In Progress): [Reminder] to check if Hibernate Null Value bug still exists
Andreas Müller
03:55 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
HHH_9751_Util is closed in the meanwhile (https://hibernate.atlassian.net/browse/HHH-9751) and we probably can remove... Andreas Müller
01:04 PM bug #10012 (Closed): Fix failing SpecimensTreeViewTest for dataportals after debian11 migration
Tests are ok again, so we can close this ticket. Katja Luther
10:03 AM bug #10012: Fix failing SpecimensTreeViewTest for dataportals after debian11 migration
php5 needed to be disabled and php7.4 enabled. This is done and pages with jstor image viewer as url are displayed co... Katja Luther
11:36 AM Revision 527d7260 (cdmlib): ref #10067 fix query type in UserDaoImpl
Andreas Müller
11:22 AM Revision 302ebb43 (cdmlib): ref #10067 adapt SortIndexUpdaterWrapperTest to new sortIndex handling
Andreas Müller
10:37 AM Revision 7ec0457c (cdmlib): ref #10067 remove hibernate-entitymanager from pom
Andreas Müller
10:34 AM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
mvn clean install –fail-never (or just –fn)
https://maven.apache.org/surefire/maven-surefire-plugin/examples/single-...
Andreas Müller
10:01 AM Revision 0880ebb5 (cdm-dataportal): ref #10012: reenable tests
Katja Luther
09:24 AM Revision c0920090 (cdmlib): cleanup
Andreas Müller

05/22/2022

12:43 AM Revision 5405f3af (cdmlib): ref #10067 change to new hibernate Query class, adapt generics and use set Parameter instead old setXXX (cont.)
Andreas Müller
12:43 AM Revision 03677b90 (cdmlib): improve paging handling in multiple DAOs
Andreas Müller
12:40 AM Revision 0f18ef1d (cdmlib): cleanup
Andreas Müller
12:30 AM Revision ab8ef9d7 (cdmlib): ref #10067 change to new hibernate Query class, adapt generics and use set Parameter instead old setXXX
Andreas Müller

05/21/2022

03:29 PM Revision 543da901 (cdmlib): ref #10067 fix incorrect pageSize/number handling in findTaxaByName
Andreas Müller
03:28 PM Revision 48415466 (cdmlib): ref #10067 adapt test to new LIE message format
Andreas Müller
03:27 PM Revision d6e66697 (cdmlib): ref #10067 adapt getFlushMode() to getHibernateFlushMode()
Andreas Müller
03:26 PM Revision 477f1ca3 (cdmlib): ref #10067 adapt IdFieldOptions and SortFieldOptions to updated lucene/hibernate search version
Andreas Müller
03:25 PM Revision d3c4888e (cdmlib): ref #10067 adapt IdentifiableEntity.cacheStrategy handling to avoid problem with unhandled generic handling and transient getter
Andreas Müller
03:21 PM Revision b82005b4 (cdmlib): ref #10067 update to hibernate 5.2.18 and jadira usertypes 7.0.0.CR1
Andreas Müller
02:34 PM Revision 2d32f71a (cdmlib): cleanup
Andreas Müller

05/20/2022

10:00 PM Revision 56a58ebe (cdmlib): cleanup
Andreas Müller
09:18 PM Revision 2a40b437 (cdmlib): cleanup
Andreas Müller
06:03 PM task #10067 (Closed): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
https://stackoverflow.com/questions/50207195/how-to-upgrade-hibernate-from-version-4-3-to-5-2-for-migration-to-jdk-10... Andreas Müller
05:50 PM Revision aee4e5c0 (cdmlib): ref #9497 fix some issues in PasswordResetServiceTest to make it more stable
Andreas Müller
05:32 PM Revision cca6cdd9 (cdmlib): cleanup
Andreas Müller
05:30 PM Revision 6d460721 (cdmlib): fix BibliographicAuthorParserTest encoding
Andreas Müller
02:50 PM task #10064 (Resolved): Upgrade cybertaxonomy.org to Drupal9
cybertaxonomy.org is updated to 9.3 and using core-recommended (see https://github.com/drupal/core-recommended), the ... Katja Luther

05/18/2022

11:05 AM feature request #10066 (New): Secundum reference should be clickable
The secundum reference should be clickable to open the details of the reference. Katja Luther

05/17/2022

11:46 AM task #10064 (In Progress): Upgrade cybertaxonomy.org to Drupal9
Updated to 8.9, now the update to drupal 9 should work.
-> To check whether everything is compatible with drupal 9, ...
Katja Luther

05/16/2022

05:21 PM bug #10007: fix reindex jobs on jobber
There are/were multiple problems.
TRIGGER-cdmserver-reindex:
1. No groovy was installed at all on the server
...
Andreas Müller
04:51 PM Revision 9cc4e8ba (server-scripts): replace cybertaxonomy.eu by .org in cdmserver-install.sh
Andreas Müller
08:45 AM task #10064: Upgrade cybertaxonomy.org to Drupal9
see https://www.drupal.org/docs/upgrading-drupal/how-to-prepare-your-drupal-7-or-8-site-for-drupal-9/upgrading-a-drup... Katja Luther

05/13/2022

12:07 PM task #10006: Check backups fully work after upgrades to debian 11
**edit-backup:**
The monthly for edit-community seems to be made every week instead every month.
Last monthlies are...
Andreas Müller
11:42 AM feature request #10003 (Closed): Implement specimen status in Data portal
Seems to work as expected and can be closed. Andreas Müller

05/12/2022

10:51 PM task #9991: Move content for users and admins from site.xml's to cybertaxonomy.org/drupal
This was blocked by problems with D8 version. So we may want to wait until D9 is installed (#10064) Andreas Müller
10:44 PM task #9994 (Closed): Tasks from documentation meeting 3/22
For all tasks from https://wiki.bgbm.org/bdinotes/index.php/BDI_332 tickets have been created. So we can close this t... Andreas Müller
10:41 PM task #10064 (Resolved): Upgrade cybertaxonomy.org to Drupal9
... as support for Drupal8 already ended this is an urgent issue.
#9994: "Drupal8 needs to be upgraded to D9/10"
Andreas Müller
10:36 PM task #10063 (New): Move online tutorials to single place
"we put all online tutorials a single place, preferable at https://cybertaxonomy.org/download/manual/ or https://cybe... Andreas Müller
10:28 PM feature request #10062 (New): Migrate TaxEditor word documentation to markdown
Word documents Manual-EDIT-Platform-01-XXX.pdf, -02 and -03 should be fully migrated to markdown for testing if every... Andreas Müller
10:24 PM bug #10061 (New): Current in-TaxEditor documentation needs to be removed
... (and replaced by up-to-date docmentation if possible, pdf?, html?)
see meeting 2022-03-18 (https://wiki.bgbm.o...
Andreas Müller
06:12 PM task #10015 (Duplicate): Cleanup EDIT server pages on BDI notes
Close this as duplicate as #10042 has a bit larger focus. Andreas Müller
06:09 PM task #10015 (In Progress): Cleanup EDIT server pages on BDI notes
I created an Retire and Archive section on the main page. Andreas Müller
06:05 PM discussion #7917 (In Progress): Revise ReferenceSystemTerms
Andreas Müller
05:55 PM bug #9007: Enable i18n support for media description UI
There seems to be a related open issue with the details view for the MediaSpecimen in the specimen tree editor.
* i...
Andreas Müller
05:54 PM bug #9007 (Feedback): Enable i18n support for media description UI
This to me seems to be fixed. Can you please verify and close the ticket if possible.
Andreas Müller
05:13 PM feature request #3756: Missing data and layout improvements for MediaSpecimen in data portal
I checked the MediaSpecimen and changed the ticket in the way that it becomes an implementation ticket. Andreas Müller
02:55 PM feature request #3756: Missing data and layout improvements for MediaSpecimen in data portal
Many things happened since this ticket was created. We need to check if there are still open issues. Andreas Müller
02:33 PM bug #10060 (In Progress): Exception when adding kind-of-unit information to a field unit
When trying to edit the "kind of unit" field of a field unit in specimen-tree-editor details view the following error... Andreas Müller
02:12 PM feature request #6866: Improve specimen page
Move back to original milestone. Andreas Müller
02:09 PM feature request #6866 (Closed): Improve specimen page
This can be closed. Open issues were moved to follow-up ticket #10058 (missing attributes) and related ticket #9879 (... Andreas Müller
12:19 PM bug #10059 (Closed): Link for stored under and identification on specimen page does not work correctly
**Stored under** links to e.g. https://portal.cybertaxonomy.org/salvador/cdm_dataportal/occurrence/cdm_dataportal/nam... Andreas Müller
12:17 PM feature request #10058 (New): Further improve specimen page (factual data, extensions,
follow up for #6866
In #6866 data has been atomized and structured already. However, there are datatypes missing. ...
Andreas Müller
11:27 AM feature request #3307 (Worksforme): optionally reduce complexity in specimen display
I guess this is fixed more or less with current implementations of 3 representations for specimens and the possibilit... Andreas Müller
10:06 AM Revision 66c8317c (taxeditor): ref #5741: add NULL value handling to symbol and symbol2
Katja Luther
 

Also available in: Atom