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From 04/13/2022 to 05/12/2022

05/12/2022

10:51 PM task #9991: Move content for users and admins from site.xml's to cybertaxonomy.org/drupal
This was blocked by problems with D8 version. So we may want to wait until D9 is installed (#10064) Andreas Müller
10:44 PM task #9994 (Closed): Tasks from documentation meeting 3/22
For all tasks from https://wiki.bgbm.org/bdinotes/index.php/BDI_332 tickets have been created. So we can close this t... Andreas Müller
10:41 PM task #10064 (Resolved): Upgrade cybertaxonomy.org to Drupal9
... as support for Drupal8 already ended this is an urgent issue.
#9994: "Drupal8 needs to be upgraded to D9/10"
Andreas Müller
10:36 PM task #10063 (New): Move online tutorials to single place
"we put all online tutorials a single place, preferable at https://cybertaxonomy.org/download/manual/ or https://cybe... Andreas Müller
10:28 PM feature request #10062 (New): Migrate TaxEditor word documentation to markdown
Word documents Manual-EDIT-Platform-01-XXX.pdf, -02 and -03 should be fully migrated to markdown for testing if every... Andreas Müller
10:24 PM bug #10061 (New): Current in-TaxEditor documentation needs to be removed
... (and replaced by up-to-date docmentation if possible, pdf?, html?)
see meeting 2022-03-18 (https://wiki.bgbm.o...
Andreas Müller
06:12 PM task #10015 (Duplicate): Cleanup EDIT server pages on BDI notes
Close this as duplicate as #10042 has a bit larger focus. Andreas Müller
06:09 PM task #10015 (In Progress): Cleanup EDIT server pages on BDI notes
I created an Retire and Archive section on the main page. Andreas Müller
06:05 PM discussion #7917 (In Progress): Revise ReferenceSystemTerms
Andreas Müller
05:55 PM bug #9007: Enable i18n support for media description UI
There seems to be a related open issue with the details view for the MediaSpecimen in the specimen tree editor.
* i...
Andreas Müller
05:54 PM bug #9007 (Feedback): Enable i18n support for media description UI
This to me seems to be fixed. Can you please verify and close the ticket if possible.
Andreas Müller
05:13 PM feature request #3756: Missing data and layout improvements for MediaSpecimen in data portal
I checked the MediaSpecimen and changed the ticket in the way that it becomes an implementation ticket. Andreas Müller
02:55 PM feature request #3756: Missing data and layout improvements for MediaSpecimen in data portal
Many things happened since this ticket was created. We need to check if there are still open issues. Andreas Müller
02:33 PM bug #10060 (In Progress): Exception when adding kind-of-unit information to a field unit
When trying to edit the "kind of unit" field of a field unit in specimen-tree-editor details view the following error... Andreas Müller
02:12 PM feature request #6866: Improve specimen page
Move back to original milestone. Andreas Müller
02:09 PM feature request #6866 (Closed): Improve specimen page
This can be closed. Open issues were moved to follow-up ticket #10058 (missing attributes) and related ticket #9879 (... Andreas Müller
12:19 PM bug #10059 (Closed): Link for stored under and identification on specimen page does not work correctly
**Stored under** links to e.g. https://portal.cybertaxonomy.org/salvador/cdm_dataportal/occurrence/cdm_dataportal/nam... Andreas Müller
12:17 PM feature request #10058 (New): Further improve specimen page (factual data, extensions,
follow up for #6866
In #6866 data has been atomized and structured already. However, there are datatypes missing. ...
Andreas Müller
11:27 AM feature request #3307 (Worksforme): optionally reduce complexity in specimen display
I guess this is fixed more or less with current implementations of 3 representations for specimens and the possibilit... Andreas Müller
10:06 AM Revision 66c8317c (taxeditor): ref #5741: add NULL value handling to symbol and symbol2
Katja Luther

05/11/2022

01:31 PM feature request #10057: Add "accessed" field to OriginalSourceBase
WGB:
mir ist gerade an Hand des folgenden Eintrags etwas aufgefallen:

![](clipboard-202205111331-1tf2u.png)
Hier ...
Andreas Müller
01:28 PM feature request #10057 (Closed): Add "accessed" field to OriginalSourceBase
to allow reusability for references of type "WebPage".
Currently it is not possible to fully reuse them once the "...
Andreas Müller
01:07 PM bug #10056 (Closed): Make Reference.Accessed deletable in TaxEditor
References of type WebPage do have an "accessed" field. This currently can't be deleted. We should make it deleteable... Andreas Müller
11:34 AM task #8863: Create full documentation on multilingual setup of the Data Portal
Within 5.32 the documentation at [[CdmDataportalMultilingual]] has been updated as far as needed for the flora mexico... Andreas Müller
11:11 AM feature request #10003 (Resolved): Implement specimen status in Data portal
Andreas Müller
10:54 AM task #10055 (New): Updates, upgrades and cleanup 2023
All tasks that should be considered during the 2023 updates, upgrades and cleanup sprint
* ~~Upgrade linux to late...
Andreas Müller

05/10/2022

05:32 PM task #9991: Move content for users and admins from site.xml's to cybertaxonomy.org/drupal
partly done for https://cybertaxonomy.org/portal/ (new page preliminary at .../portal2/)
For details see #2091#no...
Andreas Müller
05:25 PM task #2091 (Feedback): Improve DataPortal documentation
There are still a couple of open issues therefore I move this to the current milestone. We may discuss the open issue... Andreas Müller
04:46 PM task #2091: Improve DataPortal documentation
Open issues:
* move all content from https://cybertaxonomy.org/portal/ to https://cybertaxonomy.org/portal2/ : DONE...
Andreas Müller
12:50 PM task #2091: Improve DataPortal documentation
removed the outdated "CDM Dataportal Demo Sites" block by a link to reference projects on cybertaxonomy.org Andreas Müller
01:13 PM Revision ce9d99b6 (cdm-dataportal): ref #10003: fix test
Katja Luther
01:07 PM Revision 142acf49 (cdm-dataportal): ref #10003: temporarely comment out the failing line in test
Katja Luther
11:33 AM Revision 36938c7d (cdmlib): minor
Andreas Müller
09:12 AM Revision 71e326e9 (cdmlib): minor
Andreas Müller

05/09/2022

06:11 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
Andreas Müller wrote in #note-2:
> We should check within 5.32 if this is reproducabl, at least.
In first tests I...
Katja Luther
05:18 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
We should check within 5.32 if this is reproducabl, at least. Andreas Müller
04:06 PM bug #10054 (Closed): Changes on secundum reference are lost after changing status to basionym
mail Maryam Malekmohammady:
I am writing this email for your information and maybe you already know. As you know t...
Katja Luther
04:03 PM bug #10053 (Closed): Problems with saving of secundum references
mail Maryam Malekmohammady:
This problem happened several times while working on different taxon names. I am repor...
Katja Luther

05/06/2022

11:51 AM feature request #2584 (Worksforme): Show loading information for "Referencing Objects"
This is fixed in the meanwhile (probably by #9541) Andreas Müller
11:26 AM Revision 92363451 (cdm-dataportal): ref #10003: add compose status method
Katja Luther
10:33 AM Revision c3ba83c1 (server-scripts): update path to original file for rsnapshot-failsafe
Andreas Müller
10:13 AM bug #10039 (Closed): The specimen table tree shows missing date parts as "?"
Works as expected Andreas Müller
10:02 AM bug #10038 (Closed): NPE when editing multilanguage support
Seems to work as expected. Andreas Müller
09:52 AM Revision 35c7ecf0 (cdm-dataportal): ref #10003: adapt tests
Katja Luther
09:49 AM feature request #10003 (Feedback): Implement specimen status in Data portal
There is still a failing test Andreas Müller

05/05/2022

05:37 PM Revision 69d1d0e6 (cdm-dataportal): ref #10003: adapt tests
Katja Luther
02:28 PM bug #10033 (In Progress): For new FeatureTree only uuid is shown in dataportal
Katja Luther
02:21 PM Revision a13c6392 (cdm-dataportal): ref #10003: add tests
Katja Luther
02:17 PM feature request #10003 (Resolved): Implement specimen status in Data portal
There are example data for Miconia cubacinerea.
https://int.e-taxonomy.eu/dataportal/integration/reference/cdm_datap...
Katja Luther
11:54 AM feature request #10003 (In Progress): Implement specimen status in Data portal
Katja Luther
11:49 AM feature request #10003: Implement specimen status in Data portal
Added the status to derivate path and detailed specimen page
details view (in tree view and details page)
![](Scree...
Katja Luther
01:21 PM Revision 0cc7c5b5 (cdmlib): ref #10003: new statusDto and add status to derivedUnitDTO
Katja Luther
11:47 AM Revision f957f649 (cdm-dataportal): ref #10003: add status to derivate path view
Katja Luther
11:31 AM Revision d60856f1 (cdm-dataportal): ref #10003: add status to specimen detail page
Katja Luther
10:44 AM Revision 1d243157 (cdm-dataportal): adapt test to additional specimen status
Katja Luther

05/04/2022

03:12 PM bug #8591: Multiple representations problem on setting synonym as basionym
mail Maryam:
I think I reported this error before but, I am sending it here including the ordination of the action...
Katja Luther

05/03/2022

01:28 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
Actually the object returned by the ws does not contain the titlecache, independent of the value of the protectedTitl... Katja Luther
11:06 AM Revision bd00bfbf (server-scripts): move server scripts from svn to git
Katja Luther

05/02/2022

02:41 PM bug #9917 (Closed): etopo1 broken due to server migration at noaa.gov
tested the changes, additionaly removed the etopo1 entries in configuration table. Katja Luther
02:40 PM bug #9917: etopo1 broken due to server migration at noaa.gov
Applied in changeset commit:cdm-dataportal|3844ef1e68d48ab58fa0d1d292e68fef149abf2a. Katja Luther
02:40 PM Revision 3844ef1e (cdm-dataportal): fix #9917: remove etopo1 and add update script
Katja Luther
09:54 AM task #10052 (New): Check if JReleaser could be helpful
https://www.heise.de/news/JReleaser-1-0-0-Release-Automatisierung-fuer-Java-und-andere-Projekte-6669624.html Andreas Müller

04/29/2022

03:17 PM bug #9646 (Closed): CDM Light: Add name relationship to concatenated string for homotypic group
Katja Luther wrote in #note-4:
> this is fixed, last review of Walter and Nadja is needed.
As this is in producti...
Katja Luther
03:16 PM feature request #10020 (Closed): Add media transformation for new BGBM mediahub image server
Andreas Müller wrote in #note-3:
> Can you please review.
The tests look reasonable and work, so I think we can c...
Katja Luther
03:13 PM bug #8600 (Closed): Taxon Navigator: tree no longer scrolls while draging a taxon node
This is fixed, this should be around the version 5.9 Katja Luther
03:03 PM bug #10038: NPE when editing multilanguage support
This should be fixed. Please review. Katja Luther
03:01 PM feature request #9541 (Closed): Improve referencing objects handling
Works fine and open issues are moved to a new ticket. Katja Luther
03:00 PM bug #10051 (New): Remaining issues for Referencing Objects View
open issues from #9541:
* improved formatting for all CdmBase classes (some formatting also seems to have regressi...
Katja Luther
02:57 PM feature request #9071 (Closed): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
This is fixed Katja Luther
02:56 PM bug #8526 (Closed): Swap synonym with accepted taxon does not work
Katja Luther
02:56 PM bug #8526: Swap synonym with accepted taxon does not work
As this is already in production since 5.9 we can close this ticket Katja Luther
02:55 PM bug #6627 (Closed): Remaining cdm light issues
Close this ticket because a new ticket with remaining issues are created, the blocking ticket is now a related ticket. Katja Luther
02:50 PM feature request #7158 (Feedback): Add pro parte misapplied name to the concept relationship types
Katja Luther wrote in #note-10:
> the search especially of the standard search looks correct.
> @AK please review t...
Katja Luther
02:35 PM bug #6730 (Resolved): Deleting media leads to inconsistent data
I think we can close this ticket now? Katja Luther
02:33 PM bug #6730: Deleting media leads to inconsistent data
Andreas Müller wrote in #note-28:
> Andreas Müller wrote in #note-25:
> > Sorry if I have even one more issue. Look...
Katja Luther
02:07 PM feature request #5346: Allow 3 ways of ordering in Taxon Navigator
Everything is done, except a translation for sibbling in terms of trees? "Geschwister" sounds not very nice, actually... Katja Luther

04/28/2022

02:37 PM feature request #5346: Allow 3 ways of ordering in Taxon Navigator
Andreas Müller wrote in #note-11:
> What exactly is the reason, why taxa can't be moved in between 2 other taxa? Cur...
Katja Luther
02:32 PM Revision 5203542c (cdmlib): minor
Katja Luther
02:04 PM feature request #10050 (In Progress): Add missing functionality for MCL CDM dataportal
Once the MCL migrated to CDM all functionality of the MCL dataportal should be implemented also in CDM dataportals.
...
Andreas Müller
11:55 AM Revision 2a648cc6 (taxeditor): ref #5346: adapt label and fix order of dialogs
Katja Luther
11:39 AM task #7404: Add linux and mac to editor installation documentation
MAC version will be written by NaK Andreas Müller

04/27/2022

02:20 PM task #10010 (Closed): Install Spanish for Mexico Eflora dataportal
There is still a problem with textes below the search field, see #10045
but the rest is solved, so we can close this...
Katja Luther
01:32 PM task #10010: Install Spanish for Mexico Eflora dataportal
mail WB:
Hallo
im Advanced Search – Tab:
By content category – Según la categoría de contenido
Unter der Sucheing...
Katja Luther
01:03 PM task #10046 (New): Upgrade TaxEditor to java 11
Andreas Müller
12:56 PM bug #10044: Maps in Flore Du Gabon are broken
https://portal.cybertaxonomy.org/flore-gabon/cdm_dataportal/taxon/103571e4-7507-4f99-b975-1eedbca6e99d
does not work
Katja Luther
12:55 PM bug #10044: Maps in Flore Du Gabon are broken
There are pages where the maps work: https://portal.cybertaxonomy.org/flore-gabon/cdm_dataportal/taxon/f1c07476-4cf1-... Andreas Müller
12:47 PM bug #10038 (Resolved): NPE when editing multilanguage support
Andreas Müller
12:17 PM bug #10045 (In Progress): Open issues when updating portal translations
Katja Luther
10:30 AM bug #10045 (New): Open issues when updating portal translations
#5911 and [[edit:CdmDataportalMultilingual]] describe how to add and update a translation file.
* Actually the dr...
Katja Luther
12:15 PM task #8863 (In Progress): Create full documentation on multilingual setup of the Data Portal
Andreas Müller
12:13 PM bug #9990: Improve TaxEditor documentation
We need to decide if we do this now or in a later milestone Andreas Müller

04/26/2022

12:52 PM Revision a51d69a1 (cdm-dataportal): changes in spanish translations
Katja Luther

04/25/2022

03:24 PM bug #10044: Maps in Flore Du Gabon are broken
Not sure, but for FdG maybe the areas are simply not mapped. But if this is the case I wonder why maps are switched on. Andreas Müller
03:23 PM bug #10044: Maps in Flore Du Gabon are broken
Please add an example URL Andreas Müller
02:31 PM bug #10044 (Closed): Maps in Flore Du Gabon are broken
![](Screenshot 2022-04-25 143146.png)
No maps are displayed, only an error message.
Katja Luther

04/14/2022

12:57 PM Revision f89d7010 (cdm-dataportal): fix some typos
Katja Luther
12:42 PM Revision fd70850f (cdm-dataportal): add missing translations - continue
Katja Luther
12:39 PM Revision 1d0bce8b (cdm-dataportal): add missing translations - continue
Katja Luther
12:13 PM Revision 71083aff (cdm-dataportal): add missing translations
Katja Luther

04/13/2022

12:15 PM bug #10039: The specimen table tree shows missing date parts as "?"
This should be fixed with parsing the partial. Katja Luther
12:14 PM bug #10039 (Resolved): The specimen table tree shows missing date parts as "?"
Applied in changeset commit:cdm-dataportal|c2abfbb5280dc63e78d082d0c8a9d590af982329. Katja Luther
12:14 PM Revision c2abfbb5 (cdm-dataportal): fix #10039: parse partial
Katja Luther
10:49 AM bug #10012 (In Progress): Fix failing SpecimensTreeViewTest for dataportals after debian11 migration
* The problem is caused by the Specimen CEDiT 2017E68. If this is used as SpecimenTypedesignation or the taxon is use... Katja Luther
 

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