Activity
From 02/16/2022 to 03/17/2022
03/17/2022
- 11:20 PM discussion #6613 (In Progress): Interesting examples for good documentation
- "Any interested developers, including customers, can subscribe to notifications on pull requests when the documentati...
- 01:52 PM feature request #9984 (In Progress): Show area in common name label in facts view
- Katja Luther wrote in #note-3:
> We should discuss how to format this and whether it should be configurable.
>
> ... - 10:38 AM feature request #9984: Show area in common name label in facts view
- We should discuss how to format this and whether it should be configurable.
The first implementation looks like th... - 09:10 AM feature request #9984: Show area in common name label in facts view
- Example: Piper auritum Kunth. , common name "uó (Mixe)" in Mexico Eflora.
- 09:06 AM feature request #9984 (Closed): Show area in common name label in facts view
- In the Mexico Eflora we have lots of common names that differ only by area (but not in name and language). To better ...
- 01:46 PM bug #6730 (Feedback): Deleting media leads to inconsistent data
- Andreas Müller wrote in #note-25:
> Sorry if I have even one more issue. Looking at the code I wonder if the service... - 11:09 AM bug #6730 (Closed): Deleting media leads to inconsistent data
- Now only media of descriptions and protogues can be deleted if they are used more then once. The messages are adapted...
- 01:40 PM Revision 0041651c (cdmlib): ref #9932 improve BibliographicAuthorParser
- 01:40 PM Revision 4b4f15bc (cdmlib): cleanup BibliographicAuthorParser
- 01:40 PM Revision 230416f7 (cdmlib): change FRANCEFRENCHREPUBLIC to FRANCE
- 11:27 AM feature request #8344 (Closed): Cdm light export: add dummy line in simple facts table
- 11:22 AM bug #9988 (New): Fix selection for supplemental data view/referencing objects view
- from #8316#note-4
But after closing the dialog (for selecting name in source of secundum source) the supplemental ... - 11:12 AM bug #8316 (Closed): Endless loop when editing name in source of distribution
- The selection issue is another problem, so I would close this ticket and create a new ticket for setting the correct ...
- 10:14 AM bug #9983: Order sources by source type
- Example: The common names of Randia obcordata in Mexico Eflora
- 09:03 AM bug #9983 (New): Order sources by source type
- Sources for description elements (and maybe others) are not yet ordered by source type. For users the "Primary XXX" s...
- 09:39 AM bug #9987 (New): Handle areas of different vocabularies in comparator
- Areas of different vocabularies can not be compared for example while creating the condensed distribution string in c...
- 09:27 AM bug #9986 (New): Log when cdmLight export is interrupted completely
- Actually the error log does not show whether the export was created or not if exceptions appeared. Sometimes the expo...
- 09:23 AM bug #9985 (New): Problems in cdmLight export which are caught and not critical should be warnings only
- Actually every exception during the export is logged as exception, but some are catched and should only be logged as ...
03/16/2022
- 10:12 PM feature request #5736 (Closed): Show sec reference for TaxonInteractions
- Remaining issue copied to #9982
- 10:10 PM feature request #9982 (Duplicate): Show links for sec references
- reported for taxon interaction sec references (#5736) but seems also not implemented for ordinary accepted taxon sec ...
- 06:02 PM feature request #3533 (Closed): Prefill nomenclatural reference information if possible
- works as expected
- 12:53 PM feature request #3533: Prefill nomenclatural reference information if possible
- Tested with nightly and it worked as expected. Please review.
- 09:40 AM feature request #3533 (Resolved): Prefill nomenclatural reference information if possible
- 02:24 PM bug #9980 (New): Implement a checkbox to distinguish between export the whole subtree or only the selected node
- from #6800
the subtree filter should be available now, please review. To filter on taxa, you have to click on taxon... - 02:22 PM feature request #6800 (Closed): Allow all filters for DwCA export in TaxEditor
- The last issue having a checkbox "include children" is still an open issue, therefore I create a new ticket and close...
- 01:52 PM task #8445 (Closed): improve service description
- 11:27 AM task #8445: improve service description
- still needs review after release
- 11:25 AM task #8445 (Resolved): improve service description
- Applied in changeset commit:utis-webapp|cb3e1fa442c8f68b4212a6bf27338296feb350fe.
- 01:52 PM task #6384 (Closed): update BGBM logo
- 11:11 AM task #6384 (Resolved): update BGBM logo
- still needs review after release
- 01:51 PM Revision 34e5f1cf (utis-webapp): fix #6384 resize the new Bo logo
- 11:25 AM Revision cb3e1fa4 (utis-webapp): fix #8445 update utis service description
- 11:01 AM Revision f52a3556 (utis-webapp): ref #9899 update log4j to v 2.17.2 in UTIS
- 11:00 AM Revision 2b46e98c (utis-webapp): ref #6384 update BO logo and some related issues
- 10:37 AM task #8863: Create full documentation on multilingual setup of the Data Portal
- As we have a concrete example now we should try to work on this during the next week.
- 10:34 AM task #8863: Create full documentation on multilingual setup of the Data Portal
- WGB: We can test-drive this with the setup of the Flora de México portal – I just received bi-lingual texts for the p...
- 10:31 AM bug #9978 (In Progress): Change of CacheStrategy from DerivedUnitFacade to DerivedUnitDefaultCacheStrategy results in different caches for MediaSpecimen
- Not critical anymore because we implemented workaround for critical problems in #9965.
Katja, can you document the... - 10:18 AM feature request #6812 (Resolved): Improve TaxEditor download site
- 10:09 AM bug #9966 (In Progress): Search order in advanced search not correct
- 10:04 AM discussion #8558: Questionaire to get user feedback
- So while cleaning up the documentation during the next weeks we should create a site with such relevant questions.
- 10:01 AM bug #5132 (Worksforme): Remove EDITor documentation from web
- The old documentation has been moved to archive and was replaced by a newer version at cybertaxonomy.org/download/man...
- 09:59 AM task #2035: [MANUAL] Update Editor documentation to current version
- ... and discuss future structure where documentation should be stored and how to update
- 09:47 AM task #2091 (In Progress): Improve DataPortal documentation
- 09:42 AM bug #9965 (Resolved): Newly created derived unit is not shown in selection dialog
03/15/2022
- 10:24 AM Revision 4ab64574 (cdm-dataportal): adapt tests to changes in cacheStrategy - continue
- 09:41 AM Revision f02cd83c (taxeditor): ref #6730: change message text for media deletion
- 09:39 AM bug #9979 (In Progress): Flora Greece shows large images
- though medium and small exist and seem to have correct metadata.
E.g. Achillea setacea https://portal.cybertaxonom... - 09:36 AM Revision c40b1228 (cdmlib): ref #6730: only media of descriptions and protologues can be deleted if referenced
- 09:07 AM discussion #8558: Questionaire to get user feedback
- WGB: Ich denke, es ist produktiver, die Leute, die direkt im Kontakt mit Nutzern stehen zu bitten, nach Workshops, Ku...
- 08:28 AM Revision 6a5ec781 (cdmlib): ref #9965 remove trailing dot in DerivedUnitFacadeFieldUnitCacheStrategy
03/14/2022
- 09:36 PM Revision 7477eb58 (cdmlib-apps): ref #9932 handle Plantae and Tracheophyta
- 09:34 PM Revision d75ed864 (cdmlib-apps): ref #9932 handle countries for distribution
- 03:54 PM feature request #5836 (Feedback): Rename the abbrev titlecache in Reference Details View
- In #7726 abbrev title was also shorten to nomencl. title, is this the wanted label?
- 03:36 PM feature request #5346: Allow 3 ways of ordering in Taxon Navigator
- Please have a short look and then we can close this ticket.
- 03:36 PM feature request #5346: Allow 3 ways of ordering in Taxon Navigator
- Katja Luther wrote in #note-6:
> now if the taxonnode is moved as child it is put as first child and the text is cha... - 03:27 PM feature request #5346: Allow 3 ways of ordering in Taxon Navigator
- Andreas Müller wrote in #note-4:
> Also I wonder if we couldn't automatically refresh the navigator if the preference... - 03:25 PM Revision d97c3532 (taxeditor): ref #5346: after changing order in navigator update automatically
- 03:12 PM Revision 7ac49206 (cdmlib-apps): ref #9932 parse bibliographic authors
- 03:12 PM Revision abcd9503 (cdmlib-apps): ref #9932 deduplicate authors
- 03:11 PM Revision 799f779a (cdmlib-apps): ref #9932 cleanup and minor issues
- 03:10 PM Revision 2dc91504 (cdmlib-apps): ref #9932 improve parsing of subgeneric names and some refactoring
- 03:08 PM Revision 947cfcd8 (cdmlib-apps): ref #9932 adapt article detail/pages handling for MexicoEflora import
- 03:03 PM Revision fe1ac35c (cdmlib): ref #9932 add BibliographicAuthorParser (minimum version to support MexicoEflora author parsing)
- 02:41 PM Revision 3597bcc1 (cdmlib): ref #9965: adapt to changes in derivedUnit facade
- 01:23 PM Revision 0889ef83 (taxeditor): ref #9965: adapt to changes in FacadeImplementation
- 01:20 PM Revision 8f2ab1dc (cdmlib): ref #9965: revert changes and remove trailing dots
- 12:36 PM discussion #1410: DISCUSS - CDM product names
- AM: Falls es zu diesem Thema noch Änderungswünsche von jemandem gibt, wäre es schön, wenn diese bis spätestens Freita...
- 12:34 PM task #3482: Dataportal administration documentation
- Andreas Müller wrote in #note-2:
> WGB:
>
> wir haben das Dokument Manual-EDIT-Platform-DataPortal.docx, das ich ... - 12:10 PM task #3482: Dataportal administration documentation
- WGB:
wir haben das Dokument Manual-EDIT-Platform-DataPortal.docx, das ich aber dringend mit verschiedenen in meine... - 11:49 AM bug #9965 (Feedback): Newly created derived unit is not shown in selection dialog
- As discussed, the implementation leads to follow up problems due to implementations in the MediaSpecimenCacheStrategy...
- 11:46 AM Revision d5af424c (taxeditor): ref #3533: use search for author id
- 11:45 AM feature request #3533 (Feedback): Prefill nomenclatural reference information if possible
- The search works again but it does not seem to use the new search via author id. It looks like the code for the TaxEd...
- 10:29 AM bug #9978: Change of CacheStrategy from DerivedUnitFacade to DerivedUnitDefaultCacheStrategy results in different caches for MediaSpecimen
- Critical as dataportal tests fail
- 09:40 AM bug #9978 (In Progress): Change of CacheStrategy from DerivedUnitFacade to DerivedUnitDefaultCacheStrategy results in different caches for MediaSpecimen
- Discuss which titleCache is the correct one.
In dataportal test the titleCache of a derived unit changed from "Ger... - 10:02 AM bug #4944 (Closed): "Protected" indication for references needs to be improved
- This works now.
03/11/2022
- 06:43 PM task #9960 (Closed): Remove start and end date from all tickets
- 06:23 PM feature request #4682: [DISCUSS] Do we need an explanation/reason field in RelationBase
- Dicussion/implementation should be done in 5.31 to have it available for RL import in case we implement it.
- 05:36 PM bug #5132: Remove EDITor documentation from web
- I guess this is a duplicate. TODO find duplicate ticket.
However, should be implemented in 5.31 or 5.32. - 05:18 PM feature request #786: Write Developers Guide for CDM Library
- This should be updated during current milestone.
- 05:09 PM Revision c768ddb6 (cdm-dataportal): adapt tests to changes in cacheStrategy - continue
- 05:07 PM discussion #1410: DISCUSS - CDM product names
- This is a bit urgent as we want to work on documentation during the next weeks
- 05:07 PM discussion #1410 (In Progress): DISCUSS - CDM product names
- Before updating the documentations during the next weeks we should agree on common labels and how to write (e.g. CDM ...
- 04:55 PM Revision 1a071af2 (cdm-dataportal): adapt tests to changes in cacheStrategy - continue
- 04:51 PM task #2756: Documentation for MultilanguageText and TranslationEditor
- We need to check how far this is implemented. If there are open issues decide how to handle (what, who, when, ...).
- 04:45 PM task #3482: Dataportal administration documentation
- Katja, Walter, can you please leave a message here / investigate how far this documentation exists already and if exi...
- 04:38 PM task #7404: Add linux and mac to editor installation documentation
- Before updating we need to decide if we do/want to have this documentation at https://cybertaxonomy.org at all. Isn't...
- 04:27 PM discussion #8558 (In Progress): Questionaire to get user feedback
- Discuss if needed and what is needed in current milestone.
- 04:21 PM Revision 6f28922f (cdm-dataportal): adapt tests to changes in cacheStrategy
- 04:13 PM task #2035: [MANUAL] Update Editor documentation to current version
- Generally check how far the documentation is integrated in the TaxEditor (e.g. help menu).
Also check if there are s... - 04:06 PM task #488: Parser for editor documented
- Eather finalize documentation or split ticket.
Also check if existing documentation is mentioned in TaxEditor manual... - 03:49 PM task #9975: Create new UML diagramms for the CDM
- There are a few tickets in the UML 5.X milestone that are related.
- 03:48 PM task #9975 (Resolved): Create new UML diagramms for the CDM
- tools, e.g. https://en.wikipedia.org/wiki/List_of_Unified_Modeling_Language_tools
Tools:
* UML Designer (https:... - 03:46 PM task #2086: CDM description is outdated
- The above link does not work anymore. However, we need to update CDM description where ever it can be found in the do...
- 03:41 PM discussion #6613: Interesting examples for good documentation
- Maybe helpful for the discussion on Mar 18th
- 03:37 PM task #8863: Create full documentation on multilingual setup of the Data Portal
- Please decide if this can be done in current or next milestone
- 03:34 PM task #9954: Refactor EDIT Platform (Wiki) Documentation
- Move open issues to new milestone after 5.31 release
- 03:29 PM feature request #6812: Improve TaxEditor download site
- Move back to 4.10 after review.
- 03:25 PM task #9974 (Closed): Upgrade edit-production
- Open issues:
* ~~adapt mariadb config (including timezones!)~~
* ~~/etc/ntp.conf~~
* ~~cleanup~~ (#10008)
* ~~... - 03:25 PM task #9973 (Closed): Upgrade edit-database
- Open issues:
* ~~adapt mariadb config. (including timezones!)~~
* ~~/etc/ntp.conf~~
* ~~cleanup~~ (#10008)
* ~~... - 03:24 PM task #9972 (Closed): Upgrade edit-integration
- open issues after upgrading to debian 10:
* ~~automysqlbackup~~
* ~~windows build for CDM Server does not work~~ ... - 03:23 PM task #9971 (Closed): Upgrade edit-test
- open issues:
* ~~backup on edit-backup for edit-test does not work yet~~ => #10006
* ~~tmux problem when first ... - 02:24 PM bug #9966: Search order in advanced search not correct
- The lucene search uses the OrderHint NOMENCLATURAL_SORT_ORDER, which sounds good, but at the end the id is used for o...
- 11:18 AM bug #9966 (In Progress): Search order in advanced search not correct
- ERS:
Das ist die nicht-alphabetische Ausgabe der Search results in der advanced search (also bei Setzen eines Geo-... - 12:29 PM task #9969 (New): Get utis jmeter test running or switch off test
- 12:27 PM task #9968 (New): Add test/monit for testing if utis is running
- Same for mapproxy.
https://cybertaxonomy.org/eu-bon/utis/1.3/
https://geo.cybertaxonomy.org/mapproxy/
Note: ... - 11:33 AM feature request #9939: Implement specimen status in TaxEditor
- Adapt a portal test with this status.
- 11:25 AM bug #9967 (Closed): Show "not designated" for type designations in dataportal
- NaK:
ich sehe gerade, dass die Typus-Angabe „not designated“ nicht im Portal ausgegeben wird
https://caryophyl...
03/10/2022
- 02:40 PM feature request #9114: Handle malformed URIs in user type
- This was fixed in 5.30 already
- 02:36 PM feature request #9114 (Closed): Handle malformed URIs in user type
- Added a testcase for more than one fragment, the rest was already reviewed, so we can close this ticket.
- 02:35 PM feature request #9114 (Resolved): Handle malformed URIs in user type
- Applied in changeset commit:cdmlib|09da5a1bd580baae6490435bc52dddd6d2aab353.
- 02:35 PM Revision 09da5a1b (cdmlib): fix #9114: add testcase with more than one fragment
- 02:23 PM Revision 6b6f20e9 (cdmlib): titleCache should not end with a point
- 02:00 PM Revision 138275e3 (cdmlib): adapt tests to existing authors
- 01:38 PM feature request #3533: Prefill nomenclatural reference information if possible
- Changed from matching of nomenclatural titleCache to matching of id of the author. Now only references of exact the s...
- 01:28 PM Revision 07658be8 (cdmlib): ref #3533: add test for reference search with author id
- 01:10 PM Revision bddca639 (cdmlib): ref #3533: add method to search for reference from author with authorID
- 01:05 PM bug #9965 (Resolved): Newly created derived unit is not shown in selection dialog
- This should be fixed, the problem comes from the change of the cache strategy of the derived unit to DerivedUnitFacad...
- 01:01 PM bug #9965 (Closed): Newly created derived unit is not shown in selection dialog
- mail Nadja Korotkova:
ich habe einen kleinen Bug gefunden
Wenn man ein neues Specimen angelegt hat, kann man es... - 01:03 PM Revision 4e59ccae (cdmlib): ref #9965: do not change cacheStrategy of derived unit
03/09/2022
- 04:05 PM Revision d984e66b (cdmlib): ref #3533: fix search for reference with author
- 01:59 PM bug #9959 (Closed): Abbrev title instead of title for authors in bibliographic references
- ERS: Funktioniert anscheinend wie erwartet
03/04/2022
- 05:34 PM bug #6333 (Closed): Add existing media to a taxon description is not persisted
- The solution sounds reasonable and it seems to work.
- 05:12 PM bug #5967 (Closed): Adapt default update site to production update site.
- I agree that we can close the ticket as the remaining issue is small and since than most users will have reinstalled ...
- 05:05 PM bug #5775 (Closed): Advanced Search AreaFilter: areas tree incomplete
- As this ticket was solved long time ago and no complaints since then I guess we can close the ticket. I also did neve...
- 04:59 PM bug #4915 (Closed): Abbrev title for person should never be orange
- I guess this can be closed. I never observed an orange person titleCache field since the reimplementation.
- 04:26 PM bug #8872 (Closed): TermEditor does not use selected language
- This seems to be fully fixed in 5.30.
- 03:06 PM bug #8532 (Closed): common name language selection is not selected
- This seems to be fully fixed.
- 02:21 PM bug #8502 (Closed): taxa with doubtful flag lack proper formatting
- I tested this and it seems to work as expected. Ticket has been fixed 2 years ago and no complaints since then so I g...
- 01:24 PM bug #9943 (Closed): webservice portal/agent delivers wrong page content
- 01:04 PM bug #9943: webservice portal/agent delivers wrong page content
- The bug is perfectly fixed. Tested in the release version after release. Thanks & Ticket can be closed.
03/03/2022
- 04:02 PM bug #6383 (Closed): fatal error on git push: The remote end hung up unexpectedly
- This seems to be fixed with the installation of the latest redmine version.
- 03:27 PM Revision c3287a15 (cdm-server): Merge branch 'release/5.30.0' into develop
- 03:27 PM Revision f171a31c (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 03:26 PM Revision b314b22f (cdm-server): updating poms for branch'release/5.30.0' with non-snapshot versions
- 03:13 PM Revision f63b6726 (cdm-webapp): Merge branch 'release/5.30.0' into develop
- 03:13 PM Revision 56604840 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 03:13 PM Revision baebf263 (cdm-webapp): updating poms for branch'release/5.30.0' with non-snapshot versions
- 03:13 PM Revision ff41cf61 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.30.0
- 03:13 PM Revision d5955765 (taxeditor): Merge branch 'release/5.30.0' into develop
- 03:13 PM Revision e0134735 (taxeditor): Merge branch 'release/5.30.0'
- 03:11 PM Revision b8fd433a (cdm-dataportal): Merge branch 'release/5.30.0' into develop
- 03:11 PM Revision d7ecab13 (cdm-dataportal): updating poms for branch'release/5.30.0' with non-snapshot versions
- 03:10 PM Revision 2d7fb6d2 (cdm-dataportal): release-preparation: production level css
- 03:10 PM Revision 8075facf (cdm-vaadin): Merge branch 'release/5.30.0' into develop
- 03:10 PM Revision 7393b80e (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 03:05 PM Revision 30f1bc83 (cdm-vaadin): updating poms for branch'release/5.30.0' with non-snapshot versions
- 03:05 PM Revision 4b21faad (cdm-vaadin): jenkins bumping cdmlib.version to 5.30.0
- 03:04 PM Revision d85a9a5d (cdmlib): Updating develop poms back to pre merge state
- 03:04 PM Revision 12e69683 (cdmlib): Merge branch 'master' into develop
- 03:04 PM Revision 0ba186f6 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 03:04 PM Revision 2946a32b (cdmlib): Merge branch 'release/5.30.0'
- 02:58 PM bug #4348 (Discussed): Remove InputDialog in creating new bulk editor entities where not needed
- 02:49 PM bug #9943: webservice portal/agent delivers wrong page content
- https://www.phycobank.org/cdm_dataportal/search/agent/?markerType=c7cc1bcc-7e72-4ed5-8dba-e204363056a4&cdmType=Person...
- 02:45 PM bug #9830 (In Progress): México Distrito Federal needs accent
- 02:39 PM Revision 6a0535dc (cdmlib): updating poms for branch'release/5.30.0' with non-snapshot versions
- 02:33 PM Revision 07f08ef5 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.30.0-SNAPSHOT
- 02:33 PM Revision 4d6f1a53 (cdm-webapp): updating poms for 5.31.0-SNAPSHOT development
- 02:33 PM Revision 9a25a763 (cdm-webapp): updating poms for 5.30.0 branch with snapshot versions
- 02:33 PM Revision fd69ce9e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.31.0-SNAPSHOT
- 02:31 PM Revision ed8a5bcb (cdm-vaadin): jenkins bumping cdmlib.version to 5.30.0-SNAPSHOT
- 02:31 PM Revision 5921b0d5 (cdm-vaadin): updating poms for 5.31.0-SNAPSHOT development
- 02:31 PM Revision 5734cba9 (cdm-vaadin): updating poms for 5.30.0 branch with snapshot versions
- 02:31 PM Revision eb5b41b0 (taxeditor): Updated version in pom / project files to taxeditor version : 5.31.0-SNAPSHOT and cdmlib version : 5.31.0-SNAPSHOT
- 02:31 PM Revision ea661063 (taxeditor): Updated version in pom / project files to taxeditor version : 5.30.0 and cdmlib version : 5.30.0
- 02:30 PM Revision 326b6b54 (cdm-vaadin): jenkins bumping cdmlib.version to 5.31.0-SNAPSHOT
- 02:30 PM Revision 90d37c4c (cdm-server): updating poms for 5.31.0-SNAPSHOT development
- 02:30 PM Revision 9672b202 (cdm-dataportal): updating poms for 5.31.0-SNAPSHOT development
- 02:27 PM Revision 3ec2b623 (cdmlib): updating poms for 5.31.0-SNAPSHOT development
- 02:21 PM Revision 30bcb0e9 (cdmlib): cleanup
- 02:05 PM bug #9905 (Closed): Parser is slow for names with authorteams
- The work around works for me and KL also tested it and finally did not find any errors anymore. So I close this ticket.
- 12:13 PM bug #9905 (Resolved): Parser is slow for names with authorteams
- 02:00 PM bug #9962 (Closed): Primary Collector is not disabled when no collector is selected
- Works as expected now.
- 08:51 AM bug #9962 (Resolved): Primary Collector is not disabled when no collector is selected
- 01:44 PM bug #9963 (Closed): IndexOutOfBoundsException when moving a taxonnode or move an accepted taxon into synonymy
- Seems to work as expected.
- 11:51 AM Revision 360e1668 (cdmlib): ref #9905 fix exception when matching TeamOrPersonBase
- 08:57 AM bug #9949 (Closed): doGetSynonymy throws LIE in Mexico Portal
- This works as expected and adapted property path seems to be correct.
- 08:47 AM Revision ad58612f (cdmlib): cleanup
- 08:42 AM Revision a253e382 (cdmlib): ref #9905 preliminary fix handling of collections with match mode "match" using count and Person.nomenclaturalTitle
03/02/2022
- 11:16 PM task #9964 (New): Improve matching of collections
- For details see #9905.
Maybe we need to switch to HQL (https://stackoverflow.com/questions/3940371/how-do-i-select... - 11:05 PM bug #9905: Parser is slow for names with authorteams
- JPA allows addressing a certain list entry by index. Example here: https://www.logicbig.com/tutorials/java-ee-tutori...
- 10:49 AM bug #9905: Parser is slow for names with authorteams
- The problem is that in CdmGenericDaoImpl.matchNonComponentType() - currently line 775 - the MatchMode Match is not ye...
- 04:09 PM Revision 9482b46a (taxeditor): ref #9962: initially the selection dialog should show all team members -continue
- 02:44 PM Revision dfa42144 (taxeditor): ref #9962: initially the selection dialog should show all team members
- 02:08 PM bug #9948 (Closed): Search result contains only 24 items and the next page starts with the 26th result
- This works fine and the test looks good.
- 02:06 PM bug #9963 (Resolved): IndexOutOfBoundsException when moving a taxonnode or move an accepted taxon into synonymy
- please review.
- 01:30 PM bug #9963 (Closed): IndexOutOfBoundsException when moving a taxonnode or move an accepted taxon into synonymy
- mail Nadja Korotkova:
ein neuer Bug der schnell behoben werden sollte, vielleicht wurde das auch schon gemeldet. N... - 02:04 PM Revision b5515af2 (taxeditor): ref #9962: primary collector should stay if new team contains it
- 01:33 PM Revision e42e63e1 (cdmlib): ref #9963: return null, if list is empty
- 12:41 PM Revision bbc29125 (cdmlib): ref #9905 fix ticket number and add javadoc
- 12:35 PM Revision 23ac1700 (cdmlib): ref ##9943 add (commented) test for #9943 (too many matching candidates for teams)
- 12:35 PM Revision ade7e981 (cdmlib): cleanup
- 12:19 PM Revision eb5498e3 (cdmlib): cleanup
- 10:02 AM Revision bb33dd5f (taxeditor): cleanup
- 09:50 AM bug #9943: webservice portal/agent delivers wrong page content
- Henning, can you please review if this is fully fixed?
- 12:15 AM bug #9943 (Resolved): webservice portal/agent delivers wrong page content
- Applied in changeset commit:cdmlib|22584cdff29e10320c9f6385234a07f42f3c8862.
- 09:39 AM bug #9959: Abbrev title instead of title for authors in bibliographic references
- This should be fixed. Eckhard, could you review after the release if this works as expected now.
- 09:29 AM bug #9958 (Closed): Clicking on New Person Button in CollectorSelectionDialog opens TeamWizard
- Katja Luther wrote in #note-4:
> Andreas Müller wrote in #note-3:
> > It now opens the person dialogue but when ret... - 08:42 AM bug #9958: Clicking on New Person Button in CollectorSelectionDialog opens TeamWizard
- Andreas Müller wrote in #note-3:
> It now opens the person dialogue but when returning to the search the new person ... - 08:44 AM bug #9962: Primary Collector is not disabled when no collector is selected
- Andreas Müller wrote in #note-5:
> Generally this is fixed. 3 minor issues:
>
> * I suggest to also disable (make gr... - 08:32 AM Revision 850cc100 (taxeditor): ref #9962: the label of a disabled selectionElement should also be 'disabled'
- 12:15 AM Revision 22584cdf (cdmlib): fix #9943 fix incorrect pageSize/pageIndex handling in ServiceBase.page(..., restrictions, ....)
- 12:14 AM Revision d56e33e5 (cdmlib): cleanup
03/01/2022
- 11:27 PM bug #9943: webservice portal/agent delivers wrong page content
- Wolf-Henning Kusber wrote in #note-1:
> Second page delivers page 1, but beginning with position 2 on page 1
> Posi... - 11:08 PM bug #9948 (Resolved): Search result contains only 24 items and the next page starts with the 26th result
- Applied in changeset commit:cdmlib|36d4abe5020a4efefe5fd895f2b888ea2aa68071.
- 11:08 PM Revision 36d4abe5 (cdmlib): fix #9948 fix incorrect handling of "limit" in LuceneSearch and add paging test for lucene search
- 11:06 PM Revision 01670fde (cdmlib): cleanup
- 03:42 PM bug #9949: doGetSynonymy throws LIE in Mexico Portal
- Please review.
- 12:56 PM bug #9949 (Resolved): doGetSynonymy throws LIE in Mexico Portal
- Fixed. I tested on https://test.e-taxonomy.eu/dataportal/preview/test1/cdm_dataportal/taxon/0a279351-c222-4281-a825-1...
- 11:48 AM bug #9949: doGetSynonymy throws LIE in Mexico Portal
- The problem is that Mexico eFlora has sec references with authors being teams (though they are often only single pers...
- 10:38 AM bug #9949 (In Progress): doGetSynonymy throws LIE in Mexico Portal
- 03:41 PM bug #9958 (Feedback): Clicking on New Person Button in CollectorSelectionDialog opens TeamWizard
- It now opens the person dialogue but when returning to the search the new person is not found yet.
- 03:38 PM bug #9962 (Feedback): Primary Collector is not disabled when no collector is selected
- Generally this is fixed. 3 minor issues:
* I suggest to also disable (make grey) the label not only the editing fi... - 10:20 AM bug #9962 (Resolved): Primary Collector is not disabled when no collector is selected
- please review
- 12:02 PM Revision aad54f8c (cdmlib): ref #9949 first less invasive try to solve LIE for sec ref teams with no members
- 12:01 PM Revision b3bd8648 (cdmlib): cleanup
- 10:17 AM Revision 0e4271f2 (taxeditor): replace again cybertaxonomy.eu by cybertaxonomy.org in taxeditor (I)
02/28/2022
- 10:52 PM Revision 93b0f461 (taxeditor): revert replace cybertaxonomy.eu by cybertaxonomy.org for remove-update-site scp (cont. III)
- 04:44 PM Revision 20ba3f1b (taxeditor): revert replace cybertaxonomy.eu by cybertaxonomy.org for remove-update-site scp (cont. II)
- 03:34 PM Revision f52c1a89 (taxeditor): revert replace cybertaxonomy.eu by cybertaxonomy.org for remove-update-site scp (cont.)
- 03:21 PM Revision 93c5d1c6 (taxeditor): revert replace cybertaxonomy.eu by cybertaxonomy.org for remove-update-site scp
- 02:42 PM Revision 652e974c (cdm-webapp): replace cybertaxonomy.eu by cybertaxonomy.org
- 02:39 PM Revision ea6dae31 (cdm-vaadin): replace cybertaxonomy.eu by cybertaxonomy.org in vaadin
- 02:37 PM Revision 12cc0880 (taxeditor): replace cybertaxonomy.eu by cybertaxonomy.org in taxeditor
- 02:20 PM Revision d7e0d295 (taxeditor): ref #9962: reset enable/disable only when value is changed
- 02:16 PM Revision 03815122 (cdm-dataportal): cleanup
- 02:16 PM Revision 1c8ac13e (cdm-dataportal): replace cybertaxonomy.eu by cybertaxonomy.org in dataportals
- 02:14 PM Revision 3be95520 (cdmlib-apps): update poms to 5.30 in cdm-app
- 02:13 PM Revision 9e7e5359 (cdmlib-apps): replace cybertaxonomy.eu by cybertaxonomy.org in cdm-app
- 02:10 PM Revision e8429d66 (cdm-server): replace cybertaxonomy.eu by cybertaxonomy.org in cdm-server
- 02:06 PM Revision 4b9e99f4 (utis-core): cleanup
- 02:06 PM Revision b70bd3a7 (utis-core): replace cybertaxonomy.eu by cybertaxonomy.org in utis-core
- 02:01 PM Revision 3712b556 (cdmlib): cleanup
- 02:01 PM Revision 9d9ff49d (cdmlib): Replace cybertaxonomy.eu by cybertaxonomy.org in cdmlib (cont.)
- 12:56 PM Revision 58204887 (cdmlib): Replace cybertaxonomy.eu by cybertaxonomy.org in cdmlib
- 12:55 PM Revision 424c8c2d (cdmlib): Cleanup
- 12:10 PM bug #9958 (Resolved): Clicking on New Person Button in CollectorSelectionDialog opens TeamWizard
- 12:09 PM bug #9959 (Resolved): Abbrev title instead of title for authors in bibliographic references
- 11:05 AM bug #9962 (Closed): Primary Collector is not disabled when no collector is selected
- In the specimen wizard the field for primary collector should be enabled only when a collector is available and this ...
02/25/2022
- 05:01 PM task #9961 (New): Automated ticket creation
- Implement automated ticket for emails developers forward to the redmine system.
- 04:45 PM bug #8525 (Duplicate): search for infraspecific name not working as expected
- 04:09 PM task #9960 (Closed): Remove start and end date from all tickets
- ... as these were usually automatically created which disturbs creating meaningfull gantt charts
- 12:56 PM Revision 06cec9fe (taxeditor): ref #9959: fix author text in bibliographic references
- 12:43 PM Revision 84f5fe70 (taxeditor): ref #9958: fix opening new person wizard in collector selection dialog
- 09:19 AM bug #9959 (Closed): Abbrev title instead of title for authors in bibliographic references
- mail ERS:
gerade fällt mir in diesen Zusammenhang aber etwas anderes auf, was mir gerade nach einem (neuen?) bug a... - 09:16 AM bug #9958 (Closed): Clicking on New Person Button in CollectorSelectionDialog opens TeamWizard
- mail NK:
ich lege gerade einen Beleg an und will einen einzelnen Sammler eingeben, dessen Namen ich aber neu anleg...
02/24/2022
- 04:03 PM task #9957 (New): Add category archiving plugin to redmin
- https://www.redmine.org/plugins/redmine_archive_issue_categories
Currently categories can only be deleted which is... - 02:56 PM task #9956 (New): Remove unused Customfields from Redmine
- These seem to be old fields from TRAC migration which are not used anymore. But check content before fully removing.
... - 02:46 PM task #9955 (New): Upgrade vaadin to latest version
- In March 2022 this will be v23 requiring Java 11 (https://vaadin.com/blog/vaadin-23-will-require-java-11).
Of some...
02/23/2022
- 03:11 PM task #9954 (Discussed): Refactor EDIT Platform (Wiki) Documentation
- 03:03 PM task #9954 (Closed): Refactor EDIT Platform (Wiki) Documentation
- Aim: Allow developers to navigate easily to information they need
How to:
* ~~Organize structure~~
* ~~Add... - 02:40 PM task #9953 (New): Migrate dataportal/drupal to use webcomponents
- https://www.webcomponents.org/
https://www.drupal.org/project/webcomponents
https://developer.mozilla.org/de/docs/W... - 12:18 PM Revision b8143678 (cdm-dataportal): change media url to avoid time out because of loading time
02/22/2022
- 09:07 PM feature request #9952 (New): Improved caching strategy for taxon pages
- Cache updates on taxon pages currently need to be triggered by an logged in user for single taxon pages (#1475).
A... - 08:45 PM bug #4879 (Feedback): Concept relationship annotations not shown in the portal
- Check if still an open issue after the concept relationships were implemented completely from scratch
- 07:58 PM bug #2851 (Discussed): Check ordering in API paged methods
- If this is still an open issue it is urgent.
- 07:48 PM task #3241: favicon for algaterra
- Unclear if still needed
- 07:47 PM feature request #9495: Add eISSN and eISBN fields if a publication is hard copy and electronic
- eISSN and eISBN as field names would be fine with me.
- 07:29 PM EDIT Platform Etablierung task #8896 (Rejected): Review tickets in milestone Edit>Update Documentation
- We don't need an explicit ticket for this task therefore I close the ticket.
- 06:42 PM bug #6383 (Resolved): fatal error on git push: The remote end hung up unexpectedly
- This might be solved with the new redmine version. We have to watch. If it does not happen again until and during nex...
- 05:22 PM task #9898: Update utis projects to jdk 11
- Andreas Kohlbecker wrote in #note-2:
> as first step we will need to update to jdk 1.8
this is done. so next step is... - 04:53 PM bug #4583 (Closed): zoological names with book as nomref shown with undesirable comma
- meanwhile fixed
- 04:27 PM bug #3098 (New): CdmPermissionEvaluator can test for multiple permissions
- 04:21 PM task #5375: cdm-server without jsvc
- for the solution fond in the jetty project, you may refer to https://github.com/eclipse/jetty.project/issues/1485
- 04:15 PM task #8716 (Closed): Configure taxeditor to run with GTK2 in linux
- apparently fixed
- 03:44 PM feature request #9114 (Feedback): Handle malformed URIs in user type
- 03:40 PM feature request #7158: Add pro parte misapplied name to the concept relationship types
- Katja, can you do the lucene review?
- 03:37 PM bug #7176 (Feedback): published=false for Taxon where the according TaxonName is associated with an unpublished Registration
- 03:27 PM bug #7176: published=false for Taxon where the according TaxonName is associated with an unpublished Registration
- the production dvb is not consitent in the sense of this ticket:
testes on edit-db:
~~~sql
USE cdm_production_phyco... - 03:22 PM task #6512 (Worksforme): document eu.etaxonomy.cdm.model.common.IIdentifiableEntity.generateTitle()
- 03:18 PM bug #7284 (Closed): Multiple taxeditor jars created in p2 update for a single jenkins build
- apparently all issues solved
- 03:15 PM feature request #4594 (Closed): RL Webservice 7: Return taxa by Identifier
- Generally this works so we close the ticket.
- 03:14 PM feature request #5736: Show sec reference for TaxonInteractions
- For review to either close fully or split.
- 03:11 PM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor
- For further review.
- 03:09 PM bug #3511: errors are not cleared after reloading the configuration
- Ticket to me for testing.
- 01:33 PM bug #3511 (Feedback): errors are not cleared after reloading the configuration
- 03:07 PM task #4303 (Closed): [MASTER] Fauna Europaea Taxonomic Experts in the CDM [DISCUSS]
- 02:58 PM task #4303 (Feedback): [MASTER] Fauna Europaea Taxonomic Experts in the CDM [DISCUSS]
- I think this ticket can be closed. There is an open issue #5381 which is handled explicitly and not as subtask.
- 03:03 PM task #7948 (Closed): Editor for Classification Fragments
- I close this ticket. Henning, please open new ticket if there are remaining issues.
- 01:37 PM task #7948 (Feedback): Editor for Classification Fragments
- How far is this still open? The ticket description says that it was decided not to implement this.
- 02:50 PM feature request #5174 (Closed): web services for experts implemented
- I guess we can close this ticket. Even if not all webservices might be fully implemented there is currently no need f...
- 02:38 PM task #9513 (Closed): "table to div regression": replace scriptler + dynamic parameter plugins
- 02:38 PM task #9513: "table to div regression": replace scriptler + dynamic parameter plugins
- status:
* edit-jobber-1: **DONE**
* edit-test: **DONE**
* edit-int: **DONE** - 02:22 PM task #9513: "table to div regression": replace scriptler + dynamic parameter plugins
- status:
* edit-jobber-1: **DONE**
* edit-test: **DONE**
* edit-int: todo - 10:24 AM task #9513: "table to div regression": replace scriptler + dynamic parameter plugins
- status:
* edit-jobber-1: **DONE**
* edit-test: todo
* edit-int: todo - 01:59 PM bug #6245: Servlet context reports error after automatic update has run
- please check the log files on the production server:
~~~
egrep 'errors\s*ServletContext' /var/log/cdmserver/cdmse... - 01:30 PM bug #6245 (Resolved): Servlet context reports error after automatic update has run
- Does this error still exist?
- 01:54 PM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- The 4 tdwg area levels are currently mapped to 4 different map layers. The mapping of the area terms needs to be chan...
- 01:39 PM feature request #9122 (Feedback): update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- How far is this still open?
- 01:27 PM bug #8132 (In Progress): phycobank cdm-server instance problems with db connections
- This ticket seems at least to be in progress. Is it still open at all?
- 01:16 PM feature request #5815 (In Progress): Reverse label for features
- 11:13 AM report #7971 (Closed): Curator can see preparations in submitter's RegistrationWorkingSets
- Wolf-Henning Kusber wrote in #note-3:
> Curator has to be discret with respect to unpublished data.
OK, so we can... - 11:10 AM feature request #786 (New): Write Developers Guide for CDM Library
- 11:07 AM feature request #3347 (Worksforme): services and REST service controller for molecular classes implemented
- obsolete since these data are exposed as DTOs now.
- 11:05 AM feature request #3444 (Discussed): Don't show empty General Tab
- This ticket is still relevant in non-AlgaTerra context
- 11:01 AM task #3996 (Rejected): [Overview] Algaterra search functionality
- 10:59 AM bug #5676 (Closed): Sensu does not show up if no author exists for secundum reference
- 10:57 AM feature request #5956 (Closed): Improve functionality and UX for (children display in) breadcrumb navigation - 2
- open issue moved to #9951
- 10:57 AM task #9951 (New): Improve classification breadcrumb layout - avoid overlap
- see #5956#note-14 for details
- 10:52 AM task #7964: Name and orthographic variant - were to link types
- Hi Henningm, is this still an open issue, and still relevant? Please pass it to AM after commenting
- 10:43 AM feature request #6442 (Closed): Feature block settings: margins for data in block level elements
- apparently solved
- 10:12 AM task #9300 (In Progress): Name Page: harmonize media specimen lectotype representations
02/21/2022
- 04:38 PM task #9950 (New): remove Scriptler Plug-in
- The scriptler plugin is to be replaced by the [groovy plugin](https://plugins.jenkins.io/groovy/) see the description...
- 04:29 PM task #4846 (In Progress): update the integration portals to use the zen_basetheme
- cyprus can not be switched to it's new theme, the page element classes involved in theses two tests need to be adapte...
- 04:11 PM task #4846 (Resolved): update the integration portals to use the zen_basetheme
- Almost all portals should be implemented now. Palms are probably still missing - still Garland (but better leave it a...
- 04:22 PM bug #9217: swagger-ui slow in Cromium and freezes Firefox
- can most probably be solved together with #8932
- 04:22 PM bug #8932: Swagger does not distinguish overloaded controller endpoints
- can most probably be solved together with #9217
- 04:19 PM task #9599: remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
- Still needs adaptation at some places
- 04:01 PM feature request #6866 (Resolved): Improve specimen page
- 03:59 PM EDIT Platform Etablierung task #8555 (Closed): Evaluate document format and management for the documentation
- we decided on using a pandoc markdown workflow, see https://github.com/cybertaxonomy/EDIT-Platform-Manual
- 03:55 PM bug #9917 (Resolved): etopo1 broken due to server migration at noaa.gov
- Is in branch, please test locally before merging with develop
- 03:54 PM feature request #3709 (Resolved): [E+M][Editor] sufficient rights management for E+M workflow
- This is either fixed or needs to be split.
- 03:46 PM feature request #6840 (Closed): Translate dataportal to German
- closed since sufficient for now
- 03:42 PM task #9233 (New): Provide feedback mechanism for dataportals
- 03:37 PM task #9837: updadte vaadin to latets 7.* version
- 1. vaadin has been updated to latest open source version (=7.7.17)
1. updading jsoup to fix https://vaadin.com/securi... - 01:22 PM Revision b8deaebb (cdm-dataportal): ref #9917 removing etopo1 layers with db update method - needs testing
- 12:25 PM bug #9949 (Closed): doGetSynonymy throws LIE in Mexico Portal
- Caused by collectorTitleCache creation
Example pages:
https://efloramex.ib.unam.mx/cdm_dataportal/taxon/0a27935... - 11:37 AM bug #9948 (Closed): Search result contains only 24 items and the next page starts with the 26th result
- Mail:
Sehr geehrte Damen und Herren,
in der "Flora of Greece" habe ich einen Fehler gefunden: Bei der seitenwe...
02/18/2022
- 03:22 PM bug #9947: Make DescriptionElementController inherit from base controller and remove doGetDescriptionElementAnnotations
- Andreas Müller wrote in #note-2:
> Is the getAnnotations method available in the BaseController already or does this... - 03:17 PM bug #9947: Make DescriptionElementController inherit from base controller and remove doGetDescriptionElementAnnotations
- Is the getAnnotations method available in the BaseController already or does this only come with the AbstractIdentifi...
- 03:10 PM bug #9947 (New): Make DescriptionElementController inherit from base controller and remove doGetDescriptionElementAnnotations
- copied from #694#note-15
- 03:16 PM feature request #694 (Closed): FeatureTreeService and DescriptionElement implemented
- Andreas Kohlbecker wrote in #note-15:
>
> The DescriptionElementController can now be modified like :
>
> ~~~ja... - 02:05 PM feature request #694: FeatureTreeService and DescriptionElement implemented
- looks good now! Ticket can be closed.
The DescriptionElementController can now be modified like :
~~~java
class Des... - 01:19 PM feature request #694: FeatureTreeService and DescriptionElement implemented
- Good point. I removed the method from the service and from the 2 calling controllers and started new build. Can you p...
- 03:13 PM Revision de134b7c (cdmlib): ref #9947 make DescriptionElementController inherit from BaseController
- 03:12 PM Revision 8eaafcc5 (cdmlib): ref #694 cleanup
- 01:16 PM Revision 0e9e6bb0 (cdmlib): ref #694 remove explicit annotation method from descriptionElementService
- 10:07 AM task #9946 (New): Update or remove jgitflow
- The jgitflow plugin version (M6) we are using seems not to be in the default maven repository. Last version there is ...
02/17/2022
- 04:41 PM Revision 9f6a59a6 (cdm-dataportal): doc on restoring backups
- 03:05 PM Revision bbb7b93b (cdm-dataportal): doc: more debian packages needed
- 02:39 PM bug #9945 (New): Login View: Registration tab registration button active once valid email address has been typed
-
Eine valide Email eingebe, wird der „Register“ Button erst enabled, wenn ich irgendwo außerhalb des Feldes drück... - 01:28 PM feature request #694: FeatureTreeService and DescriptionElement implemented
- I think the method `public Pager<Annotation> getDescriptionElementAnnotations()` just duplicates the method `public ...
- 01:03 PM feature request #694: FeatureTreeService and DescriptionElement implemented
- I created a new ticket for moving further methods to the new service (#9944).
Can we close this ticket now? - 01:06 PM Revision 1840dc73 (cdmlib): cleanup
- 01:02 PM bug #9943 (New): webservice portal/agent delivers wrong page content
- 12:53 PM bug #9943 (In Progress): webservice portal/agent delivers wrong page content
- 09:59 AM bug #9943: webservice portal/agent delivers wrong page content
- Second page delivers page 1, but beginning with position 2 on page 1
Posititon 1 Abarca, 2 Bishop - 01:00 PM task #9944 (New): Move further methods from DescriptionService to DescriptionElementService
- for details see #694
- 12:49 PM bug #8872 (Resolved): TermEditor does not use selected language
- Working on the label of terms in term editor, I fixed this issue. Please review.
- 12:38 PM Revision 70e816c9 (taxeditor): use editor wide defined language for term representations
02/16/2022
- 11:45 AM feature request #8989 (Closed): Implement flowering periods (temporal facts) in dataportal
- Andreas Müller wrote in #note-13:
> Probably fixed, still needs review and tests (by KL)
Tests are implemented an... - 11:45 AM bug #9943 (Closed): webservice portal/agent delivers wrong page content
- This request should deliver the second page:
https://api.phycobank.org/phycobank/portal/agent.json?restriction={%2... - 11:42 AM bug #9935 (Closed): Termvocabularies and terms without a label show uuid in term editor
- 12:22 AM task #9940: Handle type category formatting in compact typification strings
- WHK:
eine Doppelung, wie in dem Beispiel ist nicht sehr häufig. Theoretisch könnte man den Herbariumcode in Fett aus...
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