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From 12/11/2021 to 01/09/2022

01/07/2022

10:57 AM Revision e5cb086b (cdmlib): minor
Andreas Müller

01/05/2022

03:39 PM bug #9911 (New): Expand area search to adjacent countries
Suggestion from David Merrick:
... Also you could have an "expand to adjacent countries" if the page knows for eac...
Andreas Müller
03:15 PM bug #9802: Label for min=max does not unify values in Matrix QuantitativeData label provider
Katja Luther wrote:
> > Also the label provider for the factual data view handles the issue correct. Is there a reas...
Andreas Müller
02:39 PM bug #9802: Label for min=max does not unify values in Matrix QuantitativeData label provider
> Also the label provider for the factual data view handles the issue correct. Is there a reason why we do not use th... Katja Luther
03:02 PM Revision 498bb6e4 (taxeditor): ref #9894: remove strange import
Katja Luther
02:24 PM Revision 72e2be95 (cdmlib): ref #9607 try metadata reading client side if error occurs server side
Andreas Müller
02:07 PM Revision 32b18aed (cdm-server): cleanup
Andreas Müller
02:02 PM Revision 68e2422c (cdm-server): Adapt organizationUrl
Andreas Müller
02:02 PM Revision 1bc53106 (cdm-server): remove PermGenSpace constants
Andreas Müller
01:04 PM feature request #9894 (Resolved): Make primary collector editable for field unit
This is implemented with a selection dialog, maybe it would be easier to use with a drop down, filled with the team m... Katja Luther
01:01 PM Revision 4faee5bc (taxeditor): ref #9894: add field primary collector and handle as described in ticket
Katja Luther
12:27 PM feature request #9910 (New): Add configurable flag for common name search in dataportal simple search
Some portals may want to have a common name search flag included in simple search (similar to include misaplication f... Andreas Müller
10:16 AM task #9909 (New): Think about using the checker framework to avoid e.g. NPEs
https://checkerframework.org/manual/ Andreas Müller

01/04/2022

03:17 PM bug #9882 (Resolved): Null argument when deleting description in bulkeditor
Katja Luther wrote:
> The original problem is solved, but there is another issue. The deletion of the description el...
Katja Luther
02:47 PM bug #9895 (Resolved): Multiple representations of the same entity after move of synonym
This is fixed,please review. Katja Luther
02:47 PM Revision cd505f6b (cdmlib): ref #9895: fix MRE when moving synonym to an already open taxon
Katja Luther
02:15 PM Revision 495cf16b (cdmlib): ref #9907: fix missing treeIndex in taxonNodeDto - continue
Katja Luther
01:49 PM bug #9907 (Resolved): NPE when trying to create polytomous key
This should be fixed. Katja Luther
01:44 PM bug #9907: NPE when trying to create polytomous key
This exception is caused by the missing treeIndex in nodeDto. Katja Luther
01:44 PM bug #9907 (Closed): NPE when trying to create polytomous key
mail Murat Erdem Guzel:
We tried to "generate polytomous key" for our group. However, we got the following error m...
Katja Luther
01:48 PM bug #9900 (Resolved): Null values in agent search dialog
This should be fixed. Katja Luther
01:47 PM feature request #9908 (Closed): Add timeperiod to credits
for further explanation see #9906#note-1 Andreas Müller
01:45 PM Revision 523bd6bc (cdmlib): ref #9907: fix missing treeIndex in taxonNodeDto
Katja Luther
12:21 PM Revision 1cc04f46 (taxeditor): change product version
Katja Luther
11:07 AM Revision 4716220c (taxeditor): minor
Katja Luther
10:22 AM Revision ac1d2808 (taxeditor): minor
Katja Luther
09:52 AM feature request #9906: Implement credits in dataportal
ERS:
eine Frage zur Portal-Gestaltung: im Cichorieae-Portal gibt es auf einzelnen Taxon-Seiten die Kategorie “Cred...
Andreas Müller
09:49 AM feature request #9906 (New): Implement credits in dataportal
Credits are editable in TaxEditor but currently not yet visible in the CDM dataportals. However, in future they will ... Andreas Müller

01/03/2022

10:08 PM bug #9905 (In Progress): Parser is slow for names with authorteams
Andreas Müller
09:58 PM bug #9905 (Closed): Parser is slow for names with authorteams
Probably the reason is that potential deduplication candidates are not found correctly and the list of candidates is ... Andreas Müller
04:48 PM Revision 6c29ac64 (taxeditor): minor
Andreas Müller
04:48 PM Revision 0489e98a (taxeditor): ref #9359 update iiif-apis and javassist version in taxeditor (cont.)
Andreas Müller
03:31 PM Revision bbab5719 (taxeditor): minor
Katja Luther
03:13 PM Revision 3b421286 (taxeditor): revert removing commons.httpclient in rcp.target
Katja Luther
03:04 PM Revision c6e3c294 (cdmlib): ref #9359 update ant version in cdmlib
Andreas Müller
03:01 PM Revision bfa2a878 (taxeditor): ref #9359 update iiif-apis and javassist version in taxeditor
Andreas Müller
02:53 PM Revision 98b42ca6 (cdmlib): minor
Andreas Müller
02:52 PM Revision 3837f479 (cdmlib): ref #9359 update doxia, objenesis, iiif-apis, xom, Saxon-HE and javassist version in cdmlib
Andreas Müller
02:47 PM Revision c311c134 (taxeditor): minor
Andreas Müller
02:47 PM Revision 1fbecc37 (taxeditor): ref #9359 fix junit version in taxeditor.test build.properties
Andreas Müller
02:46 PM Revision 53aa6cb3 (taxeditor): ref #9359 revert httpclient.version to httpcomponents.version in taxeditor
Andreas Müller
02:40 PM Revision 39287958 (cdmlib): ref #9359 update httpcore version in cdmlib
Andreas Müller
02:23 PM Revision f2e2fe71 (taxeditor): ref #9359 fix artifactID for httpcore in taxeditor
Andreas Müller
02:12 PM Revision 797afa38 (taxeditor): ref #9359 update httpclient, httpclient-cache and httpcore version in taxeditor
Andreas Müller
01:54 PM Revision 284634e7 (taxeditor): adapt feature to new version of apache httpcomponents - continue
Katja Luther
01:12 PM Revision 92d78f9c (taxeditor): adapt rcp.target to new version of apache httpcomponents
Katja Luther
12:55 PM Revision 68c6de2c (taxeditor): adapt feature to new version of apache httpcomponents
Katja Luther
12:11 PM Revision 0f130bb7 (taxeditor): revert rename of jre product definition
Katja Luther
11:38 AM Revision 1680ec19 (taxeditor): minor, only test update handler
Katja Luther

12/23/2021

10:52 AM bug #9904 (Closed): NullPointerException (NPE) in ListView with filter name="Stephano"
fixed!
Now the validation errors are visible gain:
![](picture935-1.png)
Andreas Kohlbecker
10:51 AM bug #9904 (Resolved): NullPointerException (NPE) in ListView with filter name="Stephano"
Applied in changeset commit:cdmlib|00e4c79fbb7ae6fa6a5c911072ab1b6e0d8ccd7a. Andreas Kohlbecker
10:46 AM bug #9904: NullPointerException (NPE) in ListView with filter name="Stephano"
and is caused by a validation error ("Inconsistent type designations") in which case the `summaryText` in `Registrat... Andreas Kohlbecker
10:39 AM bug #9904: NullPointerException (NPE) in ListView with filter name="Stephano"
this happens for the registration http://phycobank.org/4680 Andreas Kohlbecker
10:34 AM bug #9904 (Closed): NullPointerException (NPE) in ListView with filter name="Stephano"

~~~
[phycobank] 10:31:11,561 DEBUG [qtp1161667116-25][eu.et.cd.va.pe.AccessRestrictedViewControlBean] - allowing...
Andreas Kohlbecker
10:51 AM Revision 00e4c79f (cdmlib): fix #9904 avoiding null value for RegistrationDT0.summaryTaggedText
Andreas Kohlbecker
10:04 AM Revision 54d7e850 (cdm-vaadin): proper logging instead of system.out
Andreas Kohlbecker
10:03 AM Revision d6a88817 (cdm-vaadin): cleaning up obsolete class
Andreas Kohlbecker

12/22/2021

12:08 AM Revision 8def85fa (taxeditor): update spring version in MANIFEST.MF and build.properties
Andreas Müller
12:01 AM Revision 2b7f1be4 (taxeditor): ref #9359 updating jackson and fop to latest version in taxeditor
Andreas Müller

12/21/2021

11:56 PM Revision 8f7ca08d (taxeditor): ref #9359 updating junit and joda-time to latest version in taxeditor (cont.)
Andreas Müller
11:50 PM Revision c31fcd9c (taxeditor): ref #9359 updating commons-lang3 to latest version in taxeditor (cont.)
Andreas Müller
11:23 PM Revision 594bfa10 (taxeditor): remove dozer from gitattributes
Andreas Müller
11:23 PM Revision 9884d3db (taxeditor): ref #9359 updating junit and joda-time to latest version in taxeditor
Andreas Müller
11:22 PM Revision fd27a29d (cdmlib): ref #9359 updating junit and joda-time to latest version in cdmlib
Andreas Müller
11:08 PM Revision 92605e20 (taxeditor): ref #9359 updating commons-lang3 to latest version in taxeditor
Andreas Müller
11:07 PM Revision e2a36780 (cdmlib): ref #9359 updating commons-lang3 to latest version in cdmlib
Andreas Müller
11:03 PM Revision 6b7f04a6 (taxeditor): ref #9359 updating jackson and fop to latest version in taxeditor
Andreas Müller
11:01 PM Revision 2425ff4f (cdmlib): ref #9359 updating jackson, dozer, fop and guava to latest version in cdmlib
Andreas Müller
10:30 PM Revision 5ba4170a (taxeditor): cleanup pom developer data and ci URL to https
Andreas Müller
10:24 PM Revision 886a4b2e (cdmlib): ref #9359 update spring security OAuth2 to 2.5.1 in cdmlib
Andreas Müller
10:23 PM Revision a623e437 (cdmlib): update organizationURL
Andreas Müller
09:56 PM Revision c6e48a0a (taxeditor): ref #9359 update spring to 4.3.30 in taxeditor and use mvn properties for spring version
Andreas Müller
09:50 PM Revision 46ddc021 (cdmlib): ref #9359 update spring to 4.3.30 in cdmlib
Andreas Müller
09:37 PM Revision 3267b6d8 (taxeditor): cleanup
Andreas Müller
06:36 PM feature request #9903 (Closed): disable common name search in defaults
Andreas Kohlbecker
06:28 PM feature request #9903 (Resolved): disable common name search in defaults
Applied in changeset commit:cdm-dataportal|868cf790da78a99a626c7544a5ef512cdd28e002. Andreas Kohlbecker
06:26 PM feature request #9903 (Closed): disable common name search in defaults
Common Name Suche sollte m.E. auf jeden Fall ausgeschaltet sein per Default. Andreas Kohlbecker
06:28 PM Revision 868cf790 (cdm-dataportal): fix #9903 common name search disabled by default
Andreas Kohlbecker
06:13 PM Revision 058c75f7 (taxeditor): ref #9359 httpcomponents to 4.5.13 and spring-security to 4.2.20 in taxeditor
Andreas Müller
06:12 PM Revision 58cfb4c1 (cdmlib): cleanup
Andreas Müller
06:11 PM Revision 5bda5597 (cdmlib): ref #9359 httpcomponents to 4.5.13 and spring-security to 4.2.20 in cdmlib
Andreas Müller
05:57 PM Revision 9c73e70f (cdmlib): ref #9359 update commons-compress to 1.21
Andreas Müller
05:54 PM Revision 624722d8 (cdm-server): cleanup
Andreas Müller
02:03 PM feature request #9902 (New): Add possibility to clear area filter in advanced search
Request from Davie Merrick: "The place filter works well. Can I suggest there be an option to clear the filter. " Andreas Müller
09:00 AM Revision eee93087 (taxeditor): ref #9900: fix consistent use of abbrev title for authors of nomenclatural reference - continue
Katja Luther

12/20/2021

10:06 AM Revision 2e454d0f (cdm-server): revert usage of DefaultParser/GnuParser()
Andreas Müller

12/19/2021

01:02 AM Revision 847b908a (cdm-server): remove some more PermSize and MaxPermSize
Andreas Müller
12:54 AM Revision b396b65c (cdm-server): Replace deprecated GnuParser by DefaultParser
Andreas Müller
12:53 AM Revision d8a13c97 (cdm-server): cleanup
Andreas Müller

12/17/2021

11:54 PM Revision 3baaf1b2 (cdmlib): ref #9607 remove redundant method in IMediaInfoFactory
Andreas Müller
11:54 PM Revision f37ad6bb (cdmlib): cleanup
Andreas Müller
02:59 PM bug #9901 (In Progress): Remove unique key Media_RightsInfo.rights_id
Andreas Müller
02:59 PM bug #9901 (Closed): Remove unique key Media_RightsInfo.rights_id
Some DBs still have this key but as rights are reusable now this is not correct.
~~~
ALTER TABLE `Media_RightsInf...
Andreas Müller
01:36 PM Revision d82999cd (taxeditor): ref #9900: fix consistent use of abbrev title for authors of nomenclatural reference
Katja Luther
11:42 AM bug #9900 (Closed): Null values in agent search dialog
mail AM:
schon seit längerem ist mir aufgefallen, dass bei der Anzeige von Personen im Dialog etwas nicht stimmt. ...
Katja Luther

12/16/2021

04:28 PM Revision a9ee539b (cdm-dataportal): Merge tag '5.28.1' into develop
tagging 5.28.1 Andreas Kohlbecker
04:28 PM Revision 5726a297 (cdm-dataportal): Merge branch 'hotfix/5.28.1'
Andreas Kohlbecker
04:28 PM Revision 4f63f56d (cdm-dataportal): diabling WoRMS due to unresolved potential copyright issues
Andreas Kohlbecker
04:26 PM Revision 936c6844 (cdm-dataportal): diabling WoRMS due to unresolved potential copyright issues
Andreas Kohlbecker
01:52 PM Revision 22845878 (cdmlib): fix exception in delete of specimen
Katja Luther
01:17 PM Revision 95fa5b49 (utis-core): updating log4j configuration
Andreas Kohlbecker
01:05 PM Revision a2f52132 (utis-core): replacing all system.err/out to proper logging
Andreas Kohlbecker
11:57 AM Revision a9d074d6 (utis-webapp): ref #9899 updating log4j to latest version >=2.16.0
Andreas Kohlbecker
11:56 AM Revision 02d98cb4 (utis-core): ref #9899 updating log4j to latest version >=2.16.0
Andreas Kohlbecker
11:55 AM Revision bc1fb5b4 (utis-core): gitignore
Andreas Kohlbecker

12/15/2021

11:10 PM Revision c5d04eba (cdmlib-apps): cleanup
Andreas Müller
11:09 PM Revision 32e6bfbb (cdmlib-apps): ref #9607 adapt app-import to new media metadata reading
Andreas Müller
02:31 PM Revision 39026d65 (cdmlib): remove PermSize from cdmlib-remote-webapp launchers
Andreas Müller
02:25 PM Revision 4f5f1a8d (cdmlib): add ExcelSpecimenImportTemplate.xlsx
Andreas Müller

12/14/2021

03:45 PM Revision 81745451 (cdm-dataportal): README: on apache module installation
Andreas Kohlbecker
03:26 PM Revision e3a8d2d7 (cdm-dataportal): README: on /etc/hosts
Andreas Kohlbecker
02:53 PM Revision 2d49e5fc (cdm-dataportal): fixing path in README
Andreas Kohlbecker
02:25 PM Revision 20ea70f7 (utis-webapp): ref #9898 upgrading spring to 4.3.30.RELEASE
Andreas Kohlbecker
02:12 PM Revision 642ac8dd (cdm-dataportal): updating installation doc
Andreas Kohlbecker
01:52 PM Revision b17d9c81 (utis-webapp): ignoring .factorypath
Andreas Kohlbecker
11:36 AM Revision 7cc62e59 (taxeditor): ref #9851: add equinox/p2 to logger configuration
Katja Luther

12/13/2021

03:49 PM Revision 778f90cb (utis-core): ref #9898 updating java code level and maven plugins
Andreas Kohlbecker
03:48 PM Revision ecf8f7fc (taxeditor): minor
Katja Luther
03:48 PM Revision dc877faa (utis-webapp): ref #9898 updating javva code level and maven plugins
Andreas Kohlbecker
03:48 PM task #9898: Update utis projects to jdk 11
as first step we will need to update to jdk 1.8 Andreas Kohlbecker
02:02 PM task #9898 (New): Update utis projects to jdk 11
Andreas Kohlbecker
03:03 PM Revision 041b2db9 (utis-core): ref #9899 updating log4j to latest version >=2.15.0
Andreas Kohlbecker
03:02 PM Revision 26588e67 (utis-webapp): ref #9899 updating log4j to latest version >=2.15.0
Andreas Kohlbecker
11:39 AM Revision 793bb6ac (cdm-server): Revert "remove PermSize and MaxPermSize from launchers and configs"
This reverts commit 47d992391158c22481b5c7e178b8454e95abc4c8. Andreas Müller
11:30 AM Revision 47d99239 (cdm-server): remove PermSize and MaxPermSize from launchers and configs
Andreas Müller
 

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