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From 11/22/2021 to 12/21/2021

12/21/2021

11:56 PM Revision 8f7ca08d (taxeditor): ref #9359 updating junit and joda-time to latest version in taxeditor (cont.)
Andreas Müller
11:50 PM Revision c31fcd9c (taxeditor): ref #9359 updating commons-lang3 to latest version in taxeditor (cont.)
Andreas Müller
11:23 PM Revision 594bfa10 (taxeditor): remove dozer from gitattributes
Andreas Müller
11:23 PM Revision 9884d3db (taxeditor): ref #9359 updating junit and joda-time to latest version in taxeditor
Andreas Müller
11:22 PM Revision fd27a29d (cdmlib): ref #9359 updating junit and joda-time to latest version in cdmlib
Andreas Müller
11:08 PM Revision 92605e20 (taxeditor): ref #9359 updating commons-lang3 to latest version in taxeditor
Andreas Müller
11:07 PM Revision e2a36780 (cdmlib): ref #9359 updating commons-lang3 to latest version in cdmlib
Andreas Müller
11:03 PM Revision 6b7f04a6 (taxeditor): ref #9359 updating jackson and fop to latest version in taxeditor
Andreas Müller
11:01 PM Revision 2425ff4f (cdmlib): ref #9359 updating jackson, dozer, fop and guava to latest version in cdmlib
Andreas Müller
10:30 PM Revision 5ba4170a (taxeditor): cleanup pom developer data and ci URL to https
Andreas Müller
10:24 PM Revision 886a4b2e (cdmlib): ref #9359 update spring security OAuth2 to 2.5.1 in cdmlib
Andreas Müller
10:23 PM Revision a623e437 (cdmlib): update organizationURL
Andreas Müller
09:56 PM Revision c6e48a0a (taxeditor): ref #9359 update spring to 4.3.30 in taxeditor and use mvn properties for spring version
Andreas Müller
09:50 PM Revision 46ddc021 (cdmlib): ref #9359 update spring to 4.3.30 in cdmlib
Andreas Müller
09:37 PM Revision 3267b6d8 (taxeditor): cleanup
Andreas Müller
06:36 PM feature request #9903 (Closed): disable common name search in defaults
Andreas Kohlbecker
06:28 PM feature request #9903 (Resolved): disable common name search in defaults
Applied in changeset commit:cdm-dataportal|868cf790da78a99a626c7544a5ef512cdd28e002. Andreas Kohlbecker
06:26 PM feature request #9903 (Closed): disable common name search in defaults
Common Name Suche sollte m.E. auf jeden Fall ausgeschaltet sein per Default. Andreas Kohlbecker
06:28 PM Revision 868cf790 (cdm-dataportal): fix #9903 common name search disabled by default
Andreas Kohlbecker
06:13 PM Revision 058c75f7 (taxeditor): ref #9359 httpcomponents to 4.5.13 and spring-security to 4.2.20 in taxeditor
Andreas Müller
06:12 PM Revision 58cfb4c1 (cdmlib): cleanup
Andreas Müller
06:11 PM Revision 5bda5597 (cdmlib): ref #9359 httpcomponents to 4.5.13 and spring-security to 4.2.20 in cdmlib
Andreas Müller
05:57 PM Revision 9c73e70f (cdmlib): ref #9359 update commons-compress to 1.21
Andreas Müller
05:54 PM Revision 624722d8 (cdm-server): cleanup
Andreas Müller
02:03 PM feature request #9902 (New): Add possibility to clear area filter in advanced search
Request from Davie Merrick: "The place filter works well. Can I suggest there be an option to clear the filter. " Andreas Müller
09:00 AM Revision eee93087 (taxeditor): ref #9900: fix consistent use of abbrev title for authors of nomenclatural reference - continue
Katja Luther

12/20/2021

10:06 AM Revision 2e454d0f (cdm-server): revert usage of DefaultParser/GnuParser()
Andreas Müller

12/19/2021

01:02 AM Revision 847b908a (cdm-server): remove some more PermSize and MaxPermSize
Andreas Müller
12:54 AM Revision b396b65c (cdm-server): Replace deprecated GnuParser by DefaultParser
Andreas Müller
12:53 AM Revision d8a13c97 (cdm-server): cleanup
Andreas Müller

12/17/2021

11:54 PM Revision 3baaf1b2 (cdmlib): ref #9607 remove redundant method in IMediaInfoFactory
Andreas Müller
11:54 PM Revision f37ad6bb (cdmlib): cleanup
Andreas Müller
02:59 PM bug #9901 (In Progress): Remove unique key Media_RightsInfo.rights_id
Andreas Müller
02:59 PM bug #9901 (In Progress): Remove unique key Media_RightsInfo.rights_id
Some DBs still have this key but as rights are reusable now this is not correct.
~~~
ALTER TABLE `Media_RightsInf...
Andreas Müller
01:36 PM Revision d82999cd (taxeditor): ref #9900: fix consistent use of abbrev title for authors of nomenclatural reference
Katja Luther
11:42 AM bug #9900 (Closed): Null values in agent search dialog
mail AM:
schon seit längerem ist mir aufgefallen, dass bei der Anzeige von Personen im Dialog etwas nicht stimmt. ...
Katja Luther

12/16/2021

04:28 PM Revision a9ee539b (cdm-dataportal): Merge tag '5.28.1' into develop
tagging 5.28.1 Andreas Kohlbecker
04:28 PM Revision 5726a297 (cdm-dataportal): Merge branch 'hotfix/5.28.1'
Andreas Kohlbecker
04:28 PM Revision 4f63f56d (cdm-dataportal): diabling WoRMS due to unresolved potential copyright issues
Andreas Kohlbecker
04:26 PM Revision 936c6844 (cdm-dataportal): diabling WoRMS due to unresolved potential copyright issues
Andreas Kohlbecker
01:52 PM Revision 22845878 (cdmlib): fix exception in delete of specimen
Katja Luther
01:17 PM Revision 95fa5b49 (utis-core): updating log4j configuration
Andreas Kohlbecker
01:05 PM Revision a2f52132 (utis-core): replacing all system.err/out to proper logging
Andreas Kohlbecker
11:57 AM Revision a9d074d6 (utis-webapp): ref #9899 updating log4j to latest version >=2.16.0
Andreas Kohlbecker
11:56 AM Revision 02d98cb4 (utis-core): ref #9899 updating log4j to latest version >=2.16.0
Andreas Kohlbecker
11:55 AM Revision bc1fb5b4 (utis-core): gitignore
Andreas Kohlbecker

12/15/2021

11:10 PM Revision c5d04eba (cdmlib-apps): cleanup
Andreas Müller
11:09 PM Revision 32e6bfbb (cdmlib-apps): ref #9607 adapt app-import to new media metadata reading
Andreas Müller
02:31 PM Revision 39026d65 (cdmlib): remove PermSize from cdmlib-remote-webapp launchers
Andreas Müller
02:25 PM Revision 4f5f1a8d (cdmlib): add ExcelSpecimenImportTemplate.xlsx
Andreas Müller

12/14/2021

03:45 PM Revision 81745451 (cdm-dataportal): README: on apache module installation
Andreas Kohlbecker
03:26 PM Revision e3a8d2d7 (cdm-dataportal): README: on /etc/hosts
Andreas Kohlbecker
02:53 PM Revision 2d49e5fc (cdm-dataportal): fixing path in README
Andreas Kohlbecker
02:25 PM Revision 20ea70f7 (utis-webapp): ref #9898 upgrading spring to 4.3.30.RELEASE
Andreas Kohlbecker
02:12 PM Revision 642ac8dd (cdm-dataportal): updating installation doc
Andreas Kohlbecker
01:52 PM Revision b17d9c81 (utis-webapp): ignoring .factorypath
Andreas Kohlbecker
11:36 AM Revision 7cc62e59 (taxeditor): ref #9851: add equinox/p2 to logger configuration
Katja Luther

12/13/2021

03:49 PM Revision 778f90cb (utis-core): ref #9898 updating java code level and maven plugins
Andreas Kohlbecker
03:48 PM Revision ecf8f7fc (taxeditor): minor
Katja Luther
03:48 PM Revision dc877faa (utis-webapp): ref #9898 updating javva code level and maven plugins
Andreas Kohlbecker
03:48 PM task #9898: Update utis projects to jdk 11
as first step we will need to update to jdk 1.8 Andreas Kohlbecker
02:02 PM task #9898 (New): Update utis projects to jdk 11
Andreas Kohlbecker
03:03 PM Revision 041b2db9 (utis-core): ref #9899 updating log4j to latest version >=2.15.0
Andreas Kohlbecker
03:02 PM Revision 26588e67 (utis-webapp): ref #9899 updating log4j to latest version >=2.15.0
Andreas Kohlbecker
11:39 AM Revision 793bb6ac (cdm-server): Revert "remove PermSize and MaxPermSize from launchers and configs"
This reverts commit 47d992391158c22481b5c7e178b8454e95abc4c8. Andreas Müller
11:30 AM Revision 47d99239 (cdm-server): remove PermSize and MaxPermSize from launchers and configs
Andreas Müller

12/10/2021

04:52 PM Revision be14d958 (cdm-dataportal): ref #9897 support for AnnotationDTO class
Andreas Kohlbecker
04:50 PM Revision 53ecdbc6 (cdmlib): ref #9896 adding missing AnnotationDTO class
Andreas Kohlbecker
04:50 PM Revision e3820923 (cdmlib): adding again full ReferenceDTO to SourceDTO as the data portal needs more data
Andreas Kohlbecker
03:22 PM feature request #9896 (Resolved): Add annotations of the complete derivation branch to DerivedUnitDTO and FieldUnitDTO as AnnotationDTO
Applied in changeset commit:cdmlib|c25679bb50510d0b5ff98b617e9a18ba4fec879b. Andreas Kohlbecker
11:33 AM feature request #9896 (Closed): Add annotations of the complete derivation branch to DerivedUnitDTO and FieldUnitDTO as AnnotationDTO
the set of AnnotationDTOs should be added at SpecimenOrObservationBaseDTO
suggested structure of AnnotationDTOs:
...
Andreas Kohlbecker
03:22 PM Revision c25679bb (cdmlib): fix #9896 DerivedUnitDTO with complete set of annotationDTOs
Andreas Kohlbecker
11:39 AM feature request #9897 (New): adapt dataportal methods for transparent usage of Anntoation and AnnotationDTO
AnnotationDTO will be implemented in #9896
Methods to adapt in the data portal:
* cdm_ws_fetch_annotations() - ...
Andreas Kohlbecker
10:13 AM bug #9895 (Closed): Multiple representations of the same entity after move of synonym
This exception appears when moving a synonym to another taxon which is already open and add this synonym to another h... Katja Luther

12/09/2021

11:53 PM bug #2448 (Worksforme): Missing updated by/when (e.g. in PalmWeb)
This is very likely being fixed by #9665 therefore I close ticket. Reopen if something similar is observed in future. Andreas Müller
10:02 PM bug #9649 (Closed): Specimens sometimes have empty titleCache instead of class<UUID>
This issue seems to be fixed with #9665 Andreas Müller
12:17 AM bug #9649 (In Progress): Specimens sometimes have empty titleCache instead of class<UUID>
There are still records in fdac, which is not supported anymore and did not run cache updates.
~~~
SELECT *
F...
Andreas Müller
05:28 PM Revision dc49e27e (cdm-dataportal): adapting test to improved DerivedUnitDTO.summaryLabel
Andreas Kohlbecker
03:06 PM Revision e198e1a9 (cdm-dataportal): php doc
Andreas Kohlbecker
03:04 PM Revision 9ba6f6a5 (cdmlib): using the derivedUnit.titleCache as DerivedUnitDTO.summaryLabel
Andreas Kohlbecker
01:33 PM bug #9851: Problems during search for updates when network delay is too big
Found a possibility to increase the timeout for equinox:
https://wiki.eclipse.org/Equinox/p2/TransportDebugging
...
Katja Luther
11:35 AM Revision 95d95003 (taxeditor): ref #9851: log only update handler - minor
Katja Luther
11:09 AM Revision 0c4e1698 (taxeditor): ref #9851: log only update handler - continue
Katja Luther
11:07 AM Revision 934cad1f (taxeditor): ref #9851: change logger in UpdateHandler - continue
Katja Luther
10:50 AM Revision 365140b4 (taxeditor): ref #9851: change logger in UpdateHandler
Katja Luther
10:30 AM Revision c9aeb938 (taxeditor): ref #9851: change logging - continue
Katja Luther
10:26 AM bug #7342 (Worksforme): incomplete bean initialization with specific data causes LIEs
Andreas Kohlbecker
10:24 AM task #2250 (New): TODO use AbstractPagerImpl.hasResultsInRange() where possible
Andreas Müller wrote:
> Is this still an open issue?
yepp!
Andreas Kohlbecker
10:23 AM feature request #9884: Vaadin UI-disabled reporting
the message dialog does not yet appear for all UIs ( e.g.: http://test.e-taxonomy.eu/cdmserver/phycobank/app/distribu... Andreas Kohlbecker
09:28 AM Revision cdf554b8 (taxeditor): ref #9851: change logging
Katja Luther

12/08/2021

11:06 PM bug #2449: Some or many names have an empty fullTitleCache though information is atomized
Also the 2 examples from the description are handled correctly in the meanwhile. Andreas Müller
11:05 PM bug #2449 (In Progress): Some or many names have an empty fullTitleCache though information is atomized
Also Algaterra was saved correctly when the name was explicitly stored differently and then changed back.
Only rem...
Andreas Müller
10:52 PM bug #2449: Some or many names have an empty fullTitleCache though information is atomized
An empty fullTitleCache with atomized data was not found anywhere. Empty fullTitleCaches exist for fully empty data w... Andreas Müller
06:09 PM task #9650: Update all titleCaches after upgrade of cache strategies and formatters
last full cache updates: (e.g. for country labels)
additivity_ontology: 2021-12-09
algaterra_old: 2021-12-08
alg...
Andreas Müller
05:50 PM bug #9892 (Closed): Registration List: type status select in filter options broken
Andreas Kohlbecker
05:50 PM bug #9892 (Resolved): Registration List: type status select in filter options broken
Applied in changeset commit:cdm-vaadin|cfe33fb8b0f01d160647015e4d373d8674f7fffd. Andreas Kohlbecker
05:50 PM Revision cfe33fb8 (cdm-vaadin): fix #9892 solving broken height of type status mutiselect and turning RegistrationSearchFilter into proper java bean
Andreas Kohlbecker
05:11 PM bug #9856 (Closed): Cancel of taxon selection in move synonym results in exception
Works as expected and code ok. Andreas Müller
05:07 PM bug #9857 (Closed): TitleCache field of collector in specimen dialog should show collector title
Works as expected. Andreas Müller
04:49 PM feature request #9894 (Closed): Make primary collector editable for field unit
FieldUnit has a field primaryCollector of type Person. This seems not to be editalbe in the FieldUnit details view ye... Andreas Müller
04:41 PM bug #9881 (Closed): Newly created collector team is not shown in selection dialog
Seems to work as expected. Andreas Müller
04:09 PM bug #9893 (Closed): Name in source not shown
This works for me and also code looks ok so I think it can be closed. Andreas Müller
09:43 AM bug #9893 (Resolved): Name in source not shown
Applied in changeset commit:taxeditor|701f467031a7950db4b5cde8d6c5a10127898cc0. Katja Luther
09:21 AM bug #9893 (Closed): Name in source not shown
mail AM:
Hier gibt es eigentlich einen Name in Source „Vinca maior“, der aber nicht angezeigt wird.
Das Problem s...
Katja Luther
03:57 PM Revision a75a276d (taxeditor): typography in README
Andreas Kohlbecker
03:53 PM Revision 94c9a8c8 (taxeditor): cleaning up dev-linked-projects folder, adding README and doc for project-setup-wire-locally.sh
Andreas Kohlbecker
03:14 PM Revision 835e8eaf (taxeditor): Merge branch 'hotfix/5.28.1'
jenkins
02:29 PM Revision 4884e7f6 (taxeditor): minor for update problems
Katja Luther
10:05 AM Revision 713ed94d (taxeditor): fix #9893: fix the not shown content of descriptionelementsources
Katja Luther
09:48 AM Revision d4bd0b54 (taxeditor): Updated version in pom / project files to taxeditor version : 5.28.1 and cdmlib version : 5.28.0
jenkins
09:43 AM Revision 701f4670 (taxeditor): fix #9893: fix the not shown content of descriptionelementsources
Katja Luther

12/07/2021

03:30 PM bug #9878: show MediaSpecimen media source citations in registration items
please can you review this ticket? Only the vaadin part is relevant. Andreas Kohlbecker
03:25 PM bug #9892: Registration List: type status select in filter options broken
only one option is shown: "- unknown -" Andreas Kohlbecker
03:24 PM bug #9892 (Closed): Registration List: type status select in filter options broken
only one option is shown: "- unknown -" Andreas Kohlbecker
10:22 AM Revision 786a7418 (taxeditor): ref #9861: do not show values when not applicable - continue
Katja Luther

12/06/2021

05:17 PM Revision a650c2c1 (cdm-vaadin): ref #9498 providing feedback to users in case an unknown email has been entered
Andreas Kohlbecker
05:17 PM Revision 0e53a8de (cdmlib): ref #6161 improving method timing for callers & reporting reporting email not found
Andreas Kohlbecker
05:15 PM Revision 7c3a1444 (cdmlib): ref #6161 improving method timing for callers
Andreas Kohlbecker
04:27 PM Revision 642d1a82 (cdm-vaadin): ref #9859 ref #9877 adding Referrer-Policy: no-referrer HTTP header to prevent from Cross-domain Referer leakage
Andreas Kohlbecker
03:38 PM Revision 994d3b34 (cdm-vaadin): ref #9877 fixing readonly bug in AccountRegistrationPresenter
Andreas Kohlbecker
02:39 PM Revision be6d7785 (taxeditor): ref #9861: do not show values when not applicable
Katja Luther
12:56 PM bug #9861: Provide possibility to set a field as inapplicable
Norbert Kilian wrote
> Felder ausgrauen: ja und zugleich mit einem Wert wie "n.a." (= not applicable) füllen, damit ...
Katja Luther
10:12 AM Revision 8cbae4a4 (taxeditor): ref #9861: adapt tooltip text
Katja Luther
09:06 AM Revision 33523822 (taxeditor): ref #9861: smaller changes to fit the logic of inapplicable and only applicable
Katja Luther

12/02/2021

10:33 PM Revision 0194a014 (cdmlib): cleanup
Andreas Müller
05:11 PM Revision ce7369eb (cdmlib): ref #9809 include new authors in result.
Andreas Müller
05:04 PM Revision 89cf1da2 (cdmlib): ref #9809 remove first "line" form source reference detail
Andreas Müller
05:03 PM Revision 5d7d0b62 (cdmlib): ref #9809 add the source reference to newly added authors
Andreas Müller
04:38 PM task #9890 (Closed): Move importDeduplicationHelper to import state
Andreas Müller
04:38 PM feature request #9888 (Closed): Implement RIS import for book sections
Also deduplication is implemented now. Andreas Müller
04:37 PM feature request #9889 (Closed): Implement deduplication for RIS import
Tested on a DB with 10000 records and it was fast and correct for a file with a single reference. Andreas Müller
02:19 PM feature request #9889 (Resolved): Implement deduplication for RIS import
Andreas Müller
03:51 PM feature request #6640 (Closed): Integrate RIS Import in taxEditor
Open issues were moved to #9891 Andreas Müller
03:48 PM bug #9891 (New): Open issues for RIS import in TaxEditor
open issues from #6640
* currently the import allows only "*.txt" as ending. Which should also allow "*.ris" and ...
Andreas Müller
03:20 PM Revision 81f3266d (cdmlib): ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference (cont. II)
Andreas Müller
02:58 PM Revision 277e8759 (cdmlib): ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference (cont.)
Andreas Müller
02:28 PM feature request #9809: Implement further tags for RIS reference import
Andreas Müller wrote:
> NaK:
>
> Nur bei Book Chapters funktioniert der Import nur teilweise, dafür muss man ja d...
Andreas Müller
02:25 PM feature request #6636 (Closed): First version of RIS reference import (e.g. for Endnote import)
I guess we can close this as there is a follow up ticket and some other specific tickets for open issues. Andreas Müller
02:18 PM Revision d5bca6b4 (cdmlib): ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference
Andreas Müller
02:18 PM Revision edfa2007 (cdmlib): ref #9890 make the configuration of the ImportDeduplicationHelper configurable per import class by overriding factory method
Andreas Müller

12/01/2021

02:54 PM Revision b7367eb4 (cdmlib): ref #9861: featurestate save with dto
Katja Luther
02:27 PM Revision abd54417 (taxeditor): ref #9851: code cleaning
Katja Luther
02:17 PM Revision e92a852f (taxeditor): ref #9851: add retry paramater to vm arguments
Katja Luther
01:52 PM Revision 5f62bdc2 (cdmlib): ref #9861: termtree contains map with applicable informations
Katja Luther
01:49 PM bug #9861: Provide possibility to set a field as inapplicable
The termTreeDto contains maps, holding the information about which features relates on the presence or absence of a s... Katja Luther
09:20 AM bug #9861 (In Progress): Provide possibility to set a field as inapplicable
Katja Luther
01:44 PM Revision 027a0208 (taxeditor): ref #9861: check applicability of feature
Katja Luther
10:01 AM Revision dd020291 (taxeditor): ref #9861: add missing new workbench constant for matrix update
Katja Luther
09:29 AM Revision a55062d3 (taxeditor): ref #9861: adapt editor to changes in termnodeDto-featurestateDto
Katja Luther
09:21 AM Revision 0da64da4 (cdmlib): ref #9861: termnode contains featurestate as dto
Katja Luther

11/30/2021

02:58 PM task #9890 (Resolved): Move importDeduplicationHelper to import state
Andreas Müller
01:02 PM task #9890 (Closed): Move importDeduplicationHelper to import state
Andreas Müller
02:57 PM Revision 6a5c0e1b (cdmlib-apps): cleanup
Andreas Müller
02:56 PM Revision 9dbe8889 (cdmlib-apps): ref #9890 move importDeduplicationHelper to import state and include state in helper (cont.) - appimport
Andreas Müller
02:52 PM Revision 1594c653 (cdmlib): ref #9890 move importDeduplicationHelper to import state and include state in helper (cont.)
Andreas Müller
01:14 PM Revision 0bbede91 (cdmlib): cleanup
Andreas Müller
01:14 PM Revision afed3ff7 (cdmlib): ref #9890 move importDeduplicationHelper to import state and include state in helper (state not yet used in methods)
Andreas Müller
01:03 PM Revision 94dab8de (cdmlib-apps): ref #9890 use common state based deduplication helper in app-import
Andreas Müller
01:01 PM Revision 9d50dc9d (cdmlib-apps): cleanup
Andreas Müller
12:59 PM Revision 4fdcc9ef (cdmlib-apps): update eflora and pesi poms to 5.29
Andreas Müller

11/29/2021

11:22 PM feature request #9809: Implement further tags for RIS reference import
Book sections should work now (#9888) Andreas Müller
11:21 PM feature request #9889: Implement deduplication for RIS import
Maybe this is already partly implemented (see comment in description for #9809) Andreas Müller
11:17 PM feature request #9889 (Closed): Implement deduplication for RIS import
Most importantly needed for journals and books (as part of book sections) Andreas Müller
11:18 PM feature request #9888 (Resolved): Implement RIS import for book sections
This should be fixed except for deduplication which is handled in #9889 Andreas Müller
03:33 PM feature request #9888: Implement RIS import for book sections
Example see attachement. Andreas Müller
03:31 PM feature request #9888 (Closed): Implement RIS import for book sections
Hallo Andreas,
der RIS-Import von Artikeln und Büchern funktioniert jetzt. Das Einzige, was nicht funktioniert, is...
Andreas Müller
11:15 PM Revision 28259876 (cdmlib): cleanup
Andreas Müller
11:14 PM Revision 8e53bbac (cdmlib): ref #9888 add book section handling to RIS import
Andreas Müller
03:51 PM Revision 685db704 (cdmlib): ref #9359 update commons-io to 2.11.0 in cdmlib
Andreas Müller
02:07 PM task #9887 (Rejected): remove jdk15 classifier from json-lib
I did some rearch. json-lib on maven central is only available as json-lib-2.4-jdk15.jar and json-lib-2.4-jdk13.jar. ... Andreas Müller
12:49 PM task #9887 (Rejected): remove jdk15 classifier from json-lib
In all/most poms json-lib has a classifier
~~~
<classifier>jdk15</classifier>
~~~
It is unclear/not documente...
Andreas Müller
01:54 PM Revision c4c2f38d (taxeditor): ref #9887 add documentation to required json-lib jdk classifier in taxeditor
Andreas Müller
01:53 PM Revision d2eb469f (cdmlib): ref #9887 add documentation to required json-lib jdk classifier in cdmlib
Andreas Müller
01:38 PM Revision 89e7c142 (cdmlib): minor
Andreas Müller

11/27/2021

12:23 AM Revision 2a5543c4 (taxeditor): ref #9359 remove further libraries from lib folder in taxeditor (remaining only tools and swtchart) (cont. III)
Andreas Müller
12:17 AM Revision 9c42e66c (taxeditor): ref #9359 remove further libraries from lib folder in taxeditor (remaining only tools and swtchart) (cont. II)
Andreas Müller
12:13 AM Revision 4a655f94 (taxeditor): ref #9359 remove further libraries from lib folder in taxeditor (remaining only tools and swtchart) (cont.)
Andreas Müller
12:11 AM Revision 23a13680 (taxeditor): cleanup
Andreas Müller
12:11 AM Revision 38727a28 (taxeditor): ref #9359 remove further libraries from lib folder in taxeditor (remaining only tools and swtchart)
Andreas Müller

11/26/2021

06:10 PM task #9886 (In Progress): Create cdmlib modul cdmlib-api
A first implementation with moving UuidAndTitleCache to the new module has been implement. Vaadin and TaxEditor build... Andreas Müller
02:44 PM task #9886 (In Progress): Create cdmlib modul cdmlib-api
This modul in future will hold all classes and resources required for using cdmlib in a loosely coupled way.
Howev...
Andreas Müller
05:44 PM Revision 58400774 (taxeditor): ref #9886 adapt taxeditor to cdmlib-api changes (cont.)
Andreas Müller
05:36 PM Revision e6f1aeb9 (cdmlib): ref #9388 adding sources to MediaDTO
Andreas Kohlbecker
05:36 PM Revision e30c8166 (cdmlib): code cleaning
Andreas Kohlbecker
05:35 PM Revision 41299e2e (cdm-dataportal): ref #9388 media specimen source for name page complete but with citation format problems
Andreas Kohlbecker
04:57 PM Revision 3a9187cb (taxeditor): ref #9886 adapt taxeditor to cdmlib-api changes
Andreas Müller
03:48 PM Revision 2528cc0f (cdmlib): cleanup
Andreas Müller
03:46 PM Revision b625ecad (cdm-dataportal): avoiding invalid calls to ./{cdm-entity-uuid}/taggedText.json - 2
Andreas Kohlbecker
03:05 PM Revision b68853e5 (cdmlib): ref #9886 first implementation for cdmlib-api with only UuidAndTitleCache moved to new module
Andreas Müller
03:03 PM Revision 233fb241 (cdm-dataportal): avoiding invalid calls to ./{cdm-entity-uuid}/taggedText.json
Andreas Kohlbecker
01:32 PM Revision 0474e8d1 (cdm-dataportal): converting define into const
Andreas Kohlbecker
01:15 PM Revision 50f675e7 (cdm-dataportal): ref #9388 showing media specimen sources in compact registration dto (fixes search reults and 1 case in name page) - bug fix
Andreas Kohlbecker
12:28 PM Revision 0991781d (cdm-dataportal): ref #9388 showing media specimen sources in compact registration dto (fixes search reults and 1 case in name page)
Andreas Kohlbecker
12:05 PM bug #824 (Closed): Rank labes and Rank names inconsitent
I removed the test and close the ticket. Andreas Müller
11:06 AM bug #824: Rank labes and Rank names inconsitent
I agree with this solution. Please decide how to further proceed with this ticket.
Shall we delete the test method?
Andreas Kohlbecker
12:02 PM Revision fc26406a (cdmlib): ref #824 remove test (testRankByNameConsistency_issue824) and cleanup
Andreas Müller
10:03 AM Revision 53521cab (taxeditor): ref #9800: correct handling of enabled/disabled fields in quantitative data dialog
Katja Luther

11/25/2021

11:26 PM Revision 9816d977 (cdm-vaadin): ref #9878 fix regex
Andreas Müller
04:23 PM bug #9878 (Resolved): show MediaSpecimen media source citations in registration items
the issue in the web ui (vaadin) is fixed, the data portal issues are handled in #9388 Andreas Kohlbecker
03:01 PM bug #9878 (In Progress): show MediaSpecimen media source citations in registration items
The problem with this issue is that we are suppressing the "designated by ..." reference by just removing all separa... Andreas Kohlbecker
04:22 PM feature request #9388: show media specimen source in all pages
further example:
![](picture548-1.png)
Andreas Kohlbecker
03:54 PM Revision 14faf02d (cdmlib): ref #824 adapt app-import to rank.getByLatinName (cont.)
Andreas Müller
03:42 PM bug #824: Rank labes and Rank names inconsitent
This seems to be a misunderstanding. I did not mean that the issue is "fixed" but according to note-1 it is not an is... Andreas Müller
11:52 AM bug #824: Rank labes and Rank names inconsitent
Yes, still open. I created a Test to reproduce this issue. However it is completely unclear what is being meant by "*... Andreas Kohlbecker
03:27 PM Revision 8b853f4a (cdm-vaadin): ref #9878 restoring media type source citations by making use of tagged text cropping
Andreas Kohlbecker
03:26 PM Revision 28538cdf (cdmlib): ref #9878 tagged text crop method
Andreas Kohlbecker
03:19 PM Revision 0229525a (cdmlib-apps): ref #824 adapt app-import to rank.getByLatinName
Andreas Müller
03:18 PM Revision 3b52542d (cdmlib-apps): ref #694 adapt appimport to new DescriptionElementService
Andreas Müller
03:16 PM Revision 2c4c98fc (cdmlib-apps): cleanup
Andreas Müller
02:58 PM Revision 56f39f93 (cdmlib): dummy
Andreas Müller
02:51 PM Revision 7316cc00 (cdmlib): ref #824 rename Rank.getByNameXXX to getByLatinNameXXX
Andreas Müller
02:15 PM bug #9885 (New): Write tests for all rowWrapper issues
There are two basic tests in DescriptiveDatasetServiceTest, but actually both tests failing in suite. Katja Luther
02:01 PM Revision 6fbe489c (cdmlib): add explanation why set test to ignore
Katja Luther
01:02 PM Revision 770b2aea (taxeditor): ref #9842: adaptions to changes in descriptiveDatasetService
Katja Luther
12:39 PM Revision 8d9f9e27 (cdmlib): cleanup
Andreas Müller
12:23 PM Revision e6b5b074 (cdmlib): ignore test
Katja Luther
11:50 AM Revision 582490c7 (cdmlib): ref #9842: adaption in descriptivedataset service
Katja Luther
11:44 AM Revision ccc93896 (cdmlib): ref #824 test to reproduce rankByName consistency issue
Andreas Kohlbecker
11:43 AM Revision efb63169 (cdmlib): ref #834 test to reproduce rankByName consistency issue
Andreas Kohlbecker
11:36 AM Revision c15e4e1a (cdmlib): ref #9842: first steps removing objects in dto creation - continue
Katja Luther
11:27 AM Revision 4012cbc4 (cdmlib): ref #9842: first steps removing objects in dto creation - continue
Katja Luther
11:21 AM Revision 0d3c622a (cdm-vaadin): ref #9884 fixing PasswordResetTokenStore bean binding problem in presenter
Andreas Kohlbecker
11:04 AM bug #9851: Problems during search for updates when network delay is too big
**NOTE**: "Nur die Connect Versuche zum cdm-server gehen über den Proxy, die Update-Request gehen einen anderen Weg." Andreas Kohlbecker
11:02 AM bug #9851: Problems during search for updates when network delay is too big
with the following settings in `{eclipse-installation-folder}/configuration/.settings/org.eclipse.core.net.prefs`
...
Andreas Kohlbecker
10:05 AM Revision ed7c8f19 (cdmlib): ref #9842: first steps removing objects in dto creation
Katja Luther
09:56 AM Revision 43855127 (taxeditor): specify description type
Katja Luther

11/24/2021

05:38 PM task #7139 (Rejected): consider using spring profiles to enable vaadin UI contexts
superseded by #9884 Andreas Kohlbecker
05:35 PM Revision 3a2f0b2a (cdm-vaadin): ref #7139 cleaning up for rejected ticket
Andreas Kohlbecker
05:32 PM feature request #9497 (Closed): User self registration service
Andreas Kohlbecker
05:32 PM feature request #9877 (Resolved): Account Registration UI
please review Andreas Kohlbecker
05:31 PM feature request #9498 (Closed): Password Recovery, Registration and Login Dialog Tab fully functional
Andreas Kohlbecker
05:30 PM feature request #6161 (Closed): Service and webservice to recover forgotten passwords
I think we can keep it as it is. Andreas Kohlbecker
05:29 PM bug #3811 (Closed): Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
fixed! Andreas Kohlbecker
10:57 AM bug #3811 (New): Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
still open and a really wired interim solution to this problem. Andreas Kohlbecker
05:26 PM Revision a2fb3579 (cdmlib): ref #3811 resoring lost code line and solving "Null pointer access" problem
Andreas Kohlbecker
05:19 PM Revision 8cb8fc5c (cdmlib): ref #9497 user account self registration: AccountCreationRequest only with email-address
- request tokens only with email address possible
- refactoring request tokens class hierarchy
- ... and token stores
Andreas Kohlbecker
05:11 PM feature request #9884 (Resolved): Vaadin UI-disabled reporting
Andreas Kohlbecker
05:02 PM feature request #9884 (Closed): Vaadin UI-disabled reporting
Currently the attempt to access an vaadin UI that is disabled causes a incomprehensible exception which hardly can be... Andreas Kohlbecker
05:08 PM Revision 7f6f8587 (cdm-vaadin): ref #9884 refactoring UI enablement:
- ui beans never are null
- disabled beans have state.enabled=false
- uis throw UIDisabledException
- ErrorV...
Andreas Kohlbecker
03:11 PM bug #9883 (New): Swagger-UI respects https
Andreas Kohlbecker
03:05 PM Revision 551708da (cdm-vaadin): ref #9877 Account Registration View implemented - LoginPresenter
Andreas Kohlbecker
03:04 PM Revision bc4c64f2 (cdm-vaadin): ref #9877 Account Registration View implemented
Andreas Kohlbecker
01:42 PM Revision 83912d04 (taxeditor): ref #9851: remove experimental code - continue
Katja Luther
11:58 AM bug #9851: Problems during search for updates when network delay is too big
Using socks proxy can defined by adding
proxyData/SOCKS/hasAuth=false
proxyData/SOCKS/host=127.0.0.1
proxyData/SO...
Katja Luther
11:43 AM bug #9851: Problems during search for updates when network delay is too big
https://stackoverflow.com/questions/5857499/how-do-i-configure-the-proxy-settings-so-that-eclipse-can-download-new-pl... Katja Luther
11:23 AM task #2773 (New): TestingTermInitializer & CdmIntegrationTest must not use hardcoded DataTypeFactory
Andreas Müller
10:37 AM task #2773 (Feedback): TestingTermInitializer & CdmIntegrationTest must not use hardcoded DataTypeFactory
not without investigating the code. Could you please take over this ticket? Andreas Kohlbecker
09:52 AM Revision 91aca92e (taxeditor): cleanup
Andreas Müller
09:47 AM Revision 2e23d727 (taxeditor): ref #9882: changes in Manifest.mf
Katja Luther
09:41 AM Revision 2f8eda20 (taxeditor): ref #9882: use service method to delete description element
Katja Luther
08:36 AM Revision e2ab596e (taxeditor): ref #9882: remember operations and execute while saving
Katja Luther
08:32 AM bug #9882 (In Progress): Null argument when deleting description in bulkeditor
The original problem is solved, but there is another issue. The deletion of the description elements is not solved by... Katja Luther
08:29 AM bug #9882 (Closed): Null argument when deleting description in bulkeditor
mail AM:
null beim Löschen einer Description:
~~~ text
last remote method : http://api.cybertaxonomy.org:80/fl...
Katja Luther

11/23/2021

11:12 PM feature request #2506 (In Progress): (Type-) Specimens may need status
Andreas Müller
10:58 PM feature request #7619: Registration Item: better layoout to avoid dao element overlapping
Is this still an open issue? If yes, please adapt category/target version and/or project. Andreas Müller
10:57 PM bug #8023: IndexOutOfBoundsException caused by RegistrationWorkingSet.getRegistrationDate()
Andreas Müller wrote:
> Is this still an open issue? If yes please add category and adapt assignee and or target ver...
Andreas Müller
10:41 PM feature request #804 (Feedback): Integrationtest for TextData.getPreferredLanguageString()
Can you give a suggestion how the test should look like?
Which service/persistence layer method to use?
Andreas Müller
10:21 PM feature request #694 (Resolved): FeatureTreeService and DescriptionElement implemented
Andreas Müller
10:09 PM Revision 6490911f (cdmlib): ref #694 fix DescriptionElementService in httpInvokerServices.xml
Andreas Müller
08:35 PM task #2250 (Feedback): TODO use AbstractPagerImpl.hasResultsInRange() where possible
Is this still an open issue? Andreas Müller
08:08 PM Revision 162b8a2c (taxeditor): ref #694 add DescriptionElementService to TaxEditor
Andreas Müller
07:45 PM bug #3811 (Feedback): Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
Is this still an open issue? Andreas Müller
07:27 PM task #2773: TestingTermInitializer & CdmIntegrationTest must not use hardcoded DataTypeFactory
do you know if this is still an open issue? Andreas Müller
07:13 PM bug #824 (Feedback): Rank labes and Rank names inconsitent
I guess we can close this ticket? Andreas Müller
07:01 PM Revision 468cd076 (cdmlib): cleanup
Andreas Müller
06:56 PM Revision 803bc957 (cdmlib): ref #694 add DescriptionElementService and move some methods (cont.)
Andreas Müller
06:42 PM Revision b83da0d9 (cdmlib): ref #694 add DescriptionElementService and move some methods
Andreas Müller
06:14 PM Revision e5d9cdab (taxeditor): remove eu.etaxonomy.cdm.io.operation.config from MANIFEST.MF
Andreas Müller
06:11 PM Revision 99810eaa (taxeditor): remove FeatureNodeService from TaxEditor
Andreas Müller
05:33 PM Revision 0247feba (cdmlib): cleanup and add null handling for isDeletable
Andreas Müller
05:32 PM Revision 13386866 (cdmlib): remove deprecated featureTreeService and featureNodeService and test classes
Andreas Müller
03:31 PM Revision 6cf3ae28 (taxeditor): remove deprecated featureTreeService and featureNodeService from CdmApplicationRemoteConfiguration
Andreas Müller
03:27 PM Revision f4a56b86 (cdmlib): remove further featureTree and featureNodeService occurrences
Andreas Müller
02:41 PM Revision 31928231 (cdmlib): cleanup
Andreas Müller
02:40 PM Revision 50e1fa63 (cdmlib): remove deprecated featureNodeService from ICdmRepository (cont.)
Andreas Müller
02:40 PM Revision 36458eca (cdmlib): remove deprecated featureNodeService from ICdmRepository
Andreas Müller
02:30 PM Revision 7a743d97 (cdmlib): remove deprecated featureTreeService from ICdmRepository
Andreas Müller
02:11 PM Revision 37c7b75c (cdmlib-apps): cleanup and remove usage of feature tree service
Andreas Müller
01:58 PM Revision c44b3c98 (cdmlib): cleanup and remove usage of feature tree service
Andreas Müller
01:14 PM bug #9881 (Resolved): Newly created collector team is not shown in selection dialog
this should be fixed, please review. Katja Luther
08:08 AM bug #9881 (Closed): Newly created collector team is not shown in selection dialog
After creating a new collector team from the selection dialog, the team does not show up in the selection dialog. Katja Luther
10:04 AM Revision 98523081 (taxeditor): ref #9881: fix not showing the newly created team in collector selection dialog
Katja Luther
08:04 AM bug #9880 (New): Add active flag to user bulkeditor
In some instances are a lot of inactive users, we should add the inactive flag to the bulkeditor and a possibility to... Katja Luther

11/22/2021

10:04 PM feature request #9879: Short title for field and derived units
AM (aus Antwort auf die Mail von WGB):
Zu 2.: Es gibt im Modell schon den sog. „identityCache“ der für kürzere Lab...
Andreas Müller
09:57 PM feature request #9879 (New): Short title for field and derived units
WGB:
Der **Titel** mit seinem langen Text ist sehr groß – folgt vermutlich dem normalen Titelformat – kann man das...
Andreas Müller
06:02 PM bug #9878 (Closed): show MediaSpecimen media source citations in registration items
If lectotype= published image, image reference and refdetail not shown.
see marked areas for Vaadin
![](picture27...
Wolf-Henning Kusber
05:56 PM Revision b659f5ea (cdm-vaadin): ref #9877, ref #9498 LoginDialog Tab for registration request ready and account registration ui implemented
Andreas Kohlbecker
05:53 PM feature request #9877 (Closed): Account Registration UI
implement a separate UI for the self registration of user accounts Andreas Kohlbecker
05:52 PM feature request #9498 (In Progress): Password Recovery, Registration and Login Dialog Tab fully functional
Andreas Kohlbecker
 

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