Activity
From 11/15/2021 to 12/14/2021
12/13/2021
- 03:48 PM task #9898: Update utis projects to jdk 11
- as first step we will need to update to jdk 1.8
- 02:02 PM task #9898 (New): Update utis projects to jdk 11
12/10/2021
- 03:22 PM feature request #9896 (Resolved): Add annotations of the complete derivation branch to DerivedUnitDTO and FieldUnitDTO as AnnotationDTO
- Applied in changeset commit:cdmlib|c25679bb50510d0b5ff98b617e9a18ba4fec879b.
- 11:33 AM feature request #9896 (Closed): Add annotations of the complete derivation branch to DerivedUnitDTO and FieldUnitDTO as AnnotationDTO
- the set of AnnotationDTOs should be added at SpecimenOrObservationBaseDTO
suggested structure of AnnotationDTOs:
... - 11:39 AM feature request #9897 (New): adapt dataportal methods for transparent usage of Anntoation and AnnotationDTO
- AnnotationDTO will be implemented in #9896
Methods to adapt in the data portal:
* cdm_ws_fetch_annotations() - ... - 10:13 AM bug #9895 (Closed): Multiple representations of the same entity after move of synonym
- This exception appears when moving a synonym to another taxon which is already open and add this synonym to another h...
12/09/2021
- 11:53 PM bug #2448 (Worksforme): Missing updated by/when (e.g. in PalmWeb)
- This is very likely being fixed by #9665 therefore I close ticket. Reopen if something similar is observed in future.
- 10:02 PM bug #9649 (Closed): Specimens sometimes have empty titleCache instead of class<UUID>
- This issue seems to be fixed with #9665
- 12:17 AM bug #9649 (In Progress): Specimens sometimes have empty titleCache instead of class<UUID>
- There are still records in fdac, which is not supported anymore and did not run cache updates.
~~~
SELECT *
F... - 01:33 PM bug #9851: Problems during search for updates when network delay is too big
- Found a possibility to increase the timeout for equinox:
https://wiki.eclipse.org/Equinox/p2/TransportDebugging
... - 10:26 AM bug #7342 (Worksforme): incomplete bean initialization with specific data causes LIEs
- 10:24 AM task #2250 (New): TODO use AbstractPagerImpl.hasResultsInRange() where possible
- Andreas Müller wrote:
> Is this still an open issue?
yepp! - 10:23 AM feature request #9884: Vaadin UI-disabled reporting
- the message dialog does not yet appear for all UIs ( e.g.: http://test.e-taxonomy.eu/cdmserver/phycobank/app/distribu...
12/08/2021
- 11:06 PM bug #2449: Some or many names have an empty fullTitleCache though information is atomized
- Also the 2 examples from the description are handled correctly in the meanwhile.
- 11:05 PM bug #2449 (In Progress): Some or many names have an empty fullTitleCache though information is atomized
- Also Algaterra was saved correctly when the name was explicitly stored differently and then changed back.
Only rem... - 10:52 PM bug #2449: Some or many names have an empty fullTitleCache though information is atomized
- An empty fullTitleCache with atomized data was not found anywhere. Empty fullTitleCaches exist for fully empty data w...
- 06:09 PM task #9650: Update all titleCaches after upgrade of cache strategies and formatters
- last full cache updates: (e.g. for country labels)
algaterra_old: 2021-12-08
algaterra_new: 2021-12-08
asteraceae: 2... - 05:50 PM bug #9892 (Closed): Registration List: type status select in filter options broken
- 05:50 PM bug #9892 (Resolved): Registration List: type status select in filter options broken
- Applied in changeset commit:cdm-vaadin|cfe33fb8b0f01d160647015e4d373d8674f7fffd.
- 05:11 PM bug #9856 (Closed): Cancel of taxon selection in move synonym results in exception
- Works as expected and code ok.
- 05:07 PM bug #9857 (Closed): TitleCache field of collector in specimen dialog should show collector title
- Works as expected.
- 04:49 PM feature request #9894 (Closed): Make primary collector editable for field unit
- FieldUnit has a field primaryCollector of type Person. This seems not to be editalbe in the FieldUnit details view ye...
- 04:41 PM bug #9881 (Closed): Newly created collector team is not shown in selection dialog
- Seems to work as expected.
- 04:09 PM bug #9893 (Closed): Name in source not shown
- This works for me and also code looks ok so I think it can be closed.
- 09:43 AM bug #9893 (Resolved): Name in source not shown
- Applied in changeset commit:taxeditor|701f467031a7950db4b5cde8d6c5a10127898cc0.
- 09:21 AM bug #9893 (Closed): Name in source not shown
- mail AM:
Hier gibt es eigentlich einen Name in Source „Vinca maior“, der aber nicht angezeigt wird.
Das Problem s...
12/07/2021
- 03:30 PM bug #9878: show MediaSpecimen media source citations in registration items
- please can you review this ticket? Only the vaadin part is relevant.
- 03:25 PM bug #9892: Registration List: type status select in filter options broken
- only one option is shown: "- unknown -"
- 03:24 PM bug #9892 (Closed): Registration List: type status select in filter options broken
- only one option is shown: "- unknown -"
12/06/2021
- 12:56 PM bug #9861: Provide possibility to set a field as inapplicable
- Norbert Kilian wrote
> Felder ausgrauen: ja und zugleich mit einem Wert wie "n.a." (= not applicable) füllen, damit ...
12/02/2021
- 04:38 PM task #9890 (Closed): Move importDeduplicationHelper to import state
- 04:38 PM feature request #9888 (Closed): Implement RIS import for book sections
- Also deduplication is implemented now.
- 04:37 PM feature request #9889 (Closed): Implement deduplication for RIS import
- Tested on a DB with 10000 records and it was fast and correct for a file with a single reference.
- 02:19 PM feature request #9889 (Resolved): Implement deduplication for RIS import
- 03:51 PM feature request #6640 (Closed): Integrate RIS Import in taxEditor
- Open issues were moved to #9891
- 03:48 PM bug #9891 (New): Open issues for RIS import in TaxEditor
- open issues from #6640
* currently the import allows only "*.txt" as ending. Which should also allow "*.ris" and ... - 02:28 PM feature request #9809: Implement further tags for RIS reference import
- Andreas Müller wrote:
> NaK:
>
> Nur bei Book Chapters funktioniert der Import nur teilweise, dafür muss man ja d... - 02:25 PM feature request #6636 (Closed): First version of RIS reference import (e.g. for Endnote import)
- I guess we can close this as there is a follow up ticket and some other specific tickets for open issues.
12/01/2021
- 01:49 PM bug #9861: Provide possibility to set a field as inapplicable
- The termTreeDto contains maps, holding the information about which features relates on the presence or absence of a s...
- 09:20 AM bug #9861 (In Progress): Provide possibility to set a field as inapplicable
11/30/2021
- 02:58 PM task #9890 (Resolved): Move importDeduplicationHelper to import state
- 01:02 PM task #9890 (Closed): Move importDeduplicationHelper to import state
11/29/2021
- 11:22 PM feature request #9809: Implement further tags for RIS reference import
- Book sections should work now (#9888)
- 11:21 PM feature request #9889: Implement deduplication for RIS import
- Maybe this is already partly implemented (see comment in description for #9809)
- 11:17 PM feature request #9889 (Closed): Implement deduplication for RIS import
- Most importantly needed for journals and books (as part of book sections)
- 11:18 PM feature request #9888 (Resolved): Implement RIS import for book sections
- This should be fixed except for deduplication which is handled in #9889
- 03:33 PM feature request #9888: Implement RIS import for book sections
- Example see attachement.
- 03:31 PM feature request #9888 (Closed): Implement RIS import for book sections
- Hallo Andreas,
der RIS-Import von Artikeln und Büchern funktioniert jetzt. Das Einzige, was nicht funktioniert, is... - 02:07 PM task #9887 (Rejected): remove jdk15 classifier from json-lib
- I did some rearch. json-lib on maven central is only available as json-lib-2.4-jdk15.jar and json-lib-2.4-jdk13.jar. ...
- 12:49 PM task #9887 (Rejected): remove jdk15 classifier from json-lib
- In all/most poms json-lib has a classifier
~~~
<classifier>jdk15</classifier>
~~~
It is unclear/not documente...
11/26/2021
- 06:10 PM task #9886 (In Progress): Create cdmlib modul cdmlib-api
- A first implementation with moving UuidAndTitleCache to the new module has been implement. Vaadin and TaxEditor build...
- 02:44 PM task #9886 (In Progress): Create cdmlib modul cdmlib-api
- This modul in future will hold all classes and resources required for using cdmlib in a loosely coupled way.
Howev... - 12:05 PM bug #824 (Closed): Rank labes and Rank names inconsitent
- I removed the test and close the ticket.
- 11:06 AM bug #824: Rank labes and Rank names inconsitent
- I agree with this solution. Please decide how to further proceed with this ticket.
Shall we delete the test method?
11/25/2021
- 04:23 PM bug #9878 (Resolved): show MediaSpecimen media source citations in registration items
- the issue in the web ui (vaadin) is fixed, the data portal issues are handled in #9388
- 03:01 PM bug #9878 (In Progress): show MediaSpecimen media source citations in registration items
- The problem with this issue is that we are suppressing the "designated by ..." reference by just removing all separa...
- 04:22 PM feature request #9388: show media specimen source in all pages
- further example:
 - 03:42 PM bug #824: Rank labes and Rank names inconsitent
- This seems to be a misunderstanding. I did not mean that the issue is "fixed" but according to note-1 it is not an is...
- 11:52 AM bug #824: Rank labes and Rank names inconsitent
- Yes, still open. I created a Test to reproduce this issue. However it is completely unclear what is being meant by "*...
- 02:15 PM bug #9885 (New): Write tests for all rowWrapper issues
- There are two basic tests in DescriptiveDatasetServiceTest, but actually both tests failing in suite.
- 11:04 AM bug #9851: Problems during search for updates when network delay is too big
- **NOTE**: "Nur die Connect Versuche zum cdm-server gehen über den Proxy, die Update-Request gehen einen anderen Weg."
- 11:02 AM bug #9851: Problems during search for updates when network delay is too big
- with the following settings in `{eclipse-installation-folder}/configuration/.settings/org.eclipse.core.net.prefs`
...
11/24/2021
- 05:38 PM task #7139 (Rejected): consider using spring profiles to enable vaadin UI contexts
- superseded by #9884
- 05:32 PM feature request #9497 (Closed): User self registration service
- 05:32 PM feature request #9877 (Resolved): Account Registration UI
- please review
- 05:31 PM feature request #9498 (Closed): Password Recovery, Registration and Login Dialog Tab fully functional
- 05:30 PM feature request #6161 (Closed): Service and webservice to recover forgotten passwords
- I think we can keep it as it is.
- 05:29 PM bug #3811 (Closed): Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
- fixed!
- 10:57 AM bug #3811 (New): Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
- still open and a really wired interim solution to this problem.
- 05:11 PM feature request #9884 (Resolved): Vaadin UI-disabled reporting
- 05:02 PM feature request #9884 (Closed): Vaadin UI-disabled reporting
- Currently the attempt to access an vaadin UI that is disabled causes a incomprehensible exception which hardly can be...
- 03:11 PM bug #9883 (New): Swagger-UI respects https
- 11:58 AM bug #9851: Problems during search for updates when network delay is too big
- Using socks proxy can defined by adding
proxyData/SOCKS/hasAuth=false
proxyData/SOCKS/host=127.0.0.1
proxyData/SO... - 11:43 AM bug #9851: Problems during search for updates when network delay is too big
- https://stackoverflow.com/questions/5857499/how-do-i-configure-the-proxy-settings-so-that-eclipse-can-download-new-pl...
- 11:23 AM task #2773 (New): TestingTermInitializer & CdmIntegrationTest must not use hardcoded DataTypeFactory
- 10:37 AM task #2773 (Feedback): TestingTermInitializer & CdmIntegrationTest must not use hardcoded DataTypeFactory
- not without investigating the code. Could you please take over this ticket?
- 08:32 AM bug #9882 (In Progress): Null argument when deleting description in bulkeditor
- The original problem is solved, but there is another issue. The deletion of the description elements is not solved by...
- 08:29 AM bug #9882 (Closed): Null argument when deleting description in bulkeditor
- mail AM:
null beim Löschen einer Description:
~~~ text
last remote method : http://api.cybertaxonomy.org:80/fl...
11/23/2021
- 11:12 PM feature request #2506 (In Progress): (Type-) Specimens may need status
- 10:58 PM feature request #7619: Registration Item: better layoout to avoid dao element overlapping
- Is this still an open issue? If yes, please adapt category/target version and/or project.
- 10:57 PM bug #8023: IndexOutOfBoundsException caused by RegistrationWorkingSet.getRegistrationDate()
- Andreas Müller wrote:
> Is this still an open issue? If yes please add category and adapt assignee and or target ver... - 10:41 PM feature request #804 (Feedback): Integrationtest for TextData.getPreferredLanguageString()
- Can you give a suggestion how the test should look like?
Which service/persistence layer method to use? - 10:21 PM feature request #694 (Resolved): FeatureTreeService and DescriptionElement implemented
- 08:35 PM task #2250 (Feedback): TODO use AbstractPagerImpl.hasResultsInRange() where possible
- Is this still an open issue?
- 07:45 PM bug #3811 (Feedback): Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
- Is this still an open issue?
- 07:27 PM task #2773: TestingTermInitializer & CdmIntegrationTest must not use hardcoded DataTypeFactory
- do you know if this is still an open issue?
- 07:13 PM bug #824 (Feedback): Rank labes and Rank names inconsitent
- I guess we can close this ticket?
- 01:14 PM bug #9881 (Resolved): Newly created collector team is not shown in selection dialog
- this should be fixed, please review.
- 08:08 AM bug #9881 (Closed): Newly created collector team is not shown in selection dialog
- After creating a new collector team from the selection dialog, the team does not show up in the selection dialog.
- 08:04 AM bug #9880 (New): Add active flag to user bulkeditor
- In some instances are a lot of inactive users, we should add the inactive flag to the bulkeditor and a possibility to...
11/22/2021
- 10:04 PM feature request #9879: Short title for field and derived units
- AM (aus Antwort auf die Mail von WGB):
Zu 2.: Es gibt im Modell schon den sog. „identityCache“ der für kürzere Lab... - 09:57 PM feature request #9879 (New): Short title for field and derived units
- WGB:
Der **Titel** mit seinem langen Text ist sehr groß – folgt vermutlich dem normalen Titelformat – kann man das... - 06:02 PM bug #9878 (Closed): show MediaSpecimen media source citations in registration items
- If lectotype= published image, image reference and refdetail not shown.
see marked areas for Vaadin
: Account Registration UI
- implement a separate UI for the self registration of user accounts
- 05:52 PM feature request #9498 (In Progress): Password Recovery, Registration and Login Dialog Tab fully functional
11/19/2021
- 01:24 PM bug #9876: If no distribution has a status the mapUriParams are missing required parameters
- chaning the subject to better reflect the problem
- 12:04 PM bug #9876 (New): If no distribution has a status the mapUriParams are missing required parameters
- This was observed for Begonia aptera on FM prospective (http://portal.cybertaxonomy.org/flora-malesiana-prospective/c...
11/18/2021
- 05:50 PM feature request #9497 (Resolved): User self registration service
- Applied in changeset commit:cdmlib|002f394d7a5cc8b251f99b25b951d46410223979.
- 04:00 PM task #9875 (New): Atomize Salvador specimen data
- AM:
... Grundsätzlich würde es ja mehr Sinn machen die textbasierten Specimen zu versuchen zu atomisieren. Da sie ... - 03:49 PM feature request #8931: Taxeditor supports https
- i think we should move this ticket back to 5.15 or even to 5.14
- 03:45 PM feature request #8931 (Closed): Taxeditor supports https
- 03:00 PM feature request #8931 (Feedback): Taxeditor supports https
- Andreas Kohlbecker wrote:
> There are no problems connecting the production server api.cybertaxonomy.org:443
>
> ... - 02:51 PM bug #9873: Open in... in search view should show distribution editor
- Andreas Müller wrote:
> Maybe we can do a count before opening the distribution editor. If count is >100 (or any oth... - 08:52 AM bug #9873: Open in... in search view should show distribution editor
- Maybe we can do a count before opening the distribution editor. If count is >100 (or any other number) we may ask the...
- 08:16 AM bug #9873: Open in... in search view should show distribution editor
- mail WGB:
in principle I would expect the same behaviour as in the Taxon Navigator (i.e. opening the subtree) – so... - 02:34 PM feature request #2506: (Type-) Specimens may need status
- NaK:
Bei den Kakteen-Typus-Angaben stoße ich immer wieder auf „not preserved“ und „not found at..“, und um diese I... - 10:50 AM feature request #9859 (Resolved): Password Recovery UI
- ready for review
- 10:49 AM feature request #9498 (Closed): Password Recovery, Registration and Login Dialog Tab fully functional
- 08:14 AM bug #9874 (New): Calculate endemism automatically for higher levels (in cuba)
- mail WGB:
bei der Cuba Datenbank gibt’s ja eine eindeutige 3-stufige Hierarchie: Cuba – Cuba W/C/E – Provinz.
Es ...
11/17/2021
- 05:32 PM feature request #1580 (Duplicate): Doubtful flag or presence attribute for specimen in collection
- 05:26 PM bug #9861: Provide possibility to set a field as inapplicable
- This is a feature currently needed for Lactucinae. Therefore we should evaluate if we can implement it soon.
- 04:18 PM bug #9873 (New): Open in... in search view should show distribution editor
- We should discuss whether this should open only the selected taxon or the subtree of the selected taxon.
- 02:07 PM bug #9872 (New): Selecting cancel in "many records selected" dialogue for specimen tree editor has not effect.
- In specimen tree editor when search returns a larger number of records a warning appears that many records were selec...
- 11:59 AM feature request #9859: Password Recovery UI
- to enable the new ui in all cdm instances:
~~~
cd /opt/cdmserver/.cdmLibrary
find -maxdepth 2 -type f -name 'va... - 09:58 AM bug #9015 (Resolved): Comparator for Character Matrix creates strange result
- Hopefully this is fixed with rev 108ef8d8. With the current implementation I did not get this problem anymore. Please...
11/16/2021
- 04:02 PM feature request #9839 (New): Show distanceToGround on the occurrence page
- adapting ticket subject and category ....
- 12:52 PM feature request #9839: Show distanceToGround on the occurrence page
- If the footnote idea was only a workaround and the distance to water surface should be added to the titleCache please...
- 04:00 PM task #9871: Use identity cache for specimens in TaxEditor
- The search dialog part is mostly a duplicate for #5952
- 03:57 PM task #9871 (New): Use identity cache for specimens in TaxEditor
- In facts view and searches specimen labels are difficult to read as they use the titleCache which is often too long a...
- 01:15 PM feature request #9870 (New): [DISCUSS] Media for gathering event
- Maybe also gathering event needs media attached.
WGB: (in email discussion on #9095)
Was ist ein “reines Bild“,... - 12:05 PM feature request #9869 (Closed): Page showing IPNI authors used in PhycoBank
- Additional to the page "publish to IPNI" Zusatzdaten, Marker, "publish to IPNI"
https://www.phycobank.org/cdm_datapo... - 10:22 AM feature request #9868 (New): [DISCUSS] FeatureState map instead of Set
- Maybe we should implement inapllicable-if and only-applicable-if not as Set<FeatureState> but as Map<Feature,Applicab...
- 09:20 AM feature request #8775 (In Progress): Improve (rapid) data entry into characater matrix for categorical data
- 08:45 AM feature request #9858 (Closed): Add update result to aggregation algorithms
- Use the update result and works as expected, the code looks good as well.
- 08:42 AM bug #9843 (Resolved): When adding new descriptions it should not be necessary to load the complete matrix
- This is fixed now, please review.
11/15/2021
- 10:51 AM task #9866: Import further Salvador images
- see also #6252#note-13
- 10:50 AM task #6252: Implement image import for salvador
- WGB:
Kurz zum Verständnis: Es gibt 3 Arten von Salvador-Images:
1. Die hier referenzierten Zeichnungen aus der ... - 10:47 AM task #9867 (New): Import taxon level drawing from other publications
- WGB:
... Eine Reihe von zusätzlichen Taxon-Level Zeichnungen aus einer anderen Publikation (Witsberger, „Arboles ... - 09:41 AM bug #6296 (Closed): Simple search for common names returns duplicates
- Code cleaning done.
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