Activity
From 10/28/2021 to 11/26/2021
11/26/2021
- 06:10 PM task #9886 (In Progress): Create cdmlib modul cdmlib-api
- A first implementation with moving UuidAndTitleCache to the new module has been implement. Vaadin and TaxEditor build...
- 02:44 PM task #9886 (In Progress): Create cdmlib modul cdmlib-api
- This modul in future will hold all classes and resources required for using cdmlib in a loosely coupled way.
Howev... - 12:05 PM bug #824 (Closed): Rank labes and Rank names inconsitent
- I removed the test and close the ticket.
- 11:06 AM bug #824: Rank labes and Rank names inconsitent
- I agree with this solution. Please decide how to further proceed with this ticket.
Shall we delete the test method?
11/25/2021
- 04:23 PM bug #9878 (Resolved): show MediaSpecimen media source citations in registration items
- the issue in the web ui (vaadin) is fixed, the data portal issues are handled in #9388
- 03:01 PM bug #9878 (In Progress): show MediaSpecimen media source citations in registration items
- The problem with this issue is that we are suppressing the "designated by ..." reference by just removing all separa...
- 04:22 PM feature request #9388: show media specimen source in all pages
- further example:
![](picture548-1.png) - 03:42 PM bug #824: Rank labes and Rank names inconsitent
- This seems to be a misunderstanding. I did not mean that the issue is "fixed" but according to note-1 it is not an is...
- 11:52 AM bug #824: Rank labes and Rank names inconsitent
- Yes, still open. I created a Test to reproduce this issue. However it is completely unclear what is being meant by "*...
- 02:15 PM bug #9885 (New): Write tests for all rowWrapper issues
- There are two basic tests in DescriptiveDatasetServiceTest, but actually both tests failing in suite.
- 11:04 AM bug #9851: Problems during search for updates when network delay is too big
- **NOTE**: "Nur die Connect Versuche zum cdm-server gehen über den Proxy, die Update-Request gehen einen anderen Weg."
- 11:02 AM bug #9851: Problems during search for updates when network delay is too big
- with the following settings in `{eclipse-installation-folder}/configuration/.settings/org.eclipse.core.net.prefs`
...
11/24/2021
- 05:38 PM task #7139 (Rejected): consider using spring profiles to enable vaadin UI contexts
- superseded by #9884
- 05:32 PM feature request #9497 (Closed): User self registration service
- 05:32 PM feature request #9877 (Resolved): Account Registration UI
- please review
- 05:31 PM feature request #9498 (Closed): Password Recovery, Registration and Login Dialog Tab fully functional
- 05:30 PM feature request #6161 (Closed): Service and webservice to recover forgotten passwords
- I think we can keep it as it is.
- 05:29 PM bug #3811 (Closed): Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
- fixed!
- 10:57 AM bug #3811 (New): Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
- still open and a really wired interim solution to this problem.
- 05:11 PM feature request #9884 (Resolved): Vaadin UI-disabled reporting
- 05:02 PM feature request #9884 (Closed): Vaadin UI-disabled reporting
- Currently the attempt to access an vaadin UI that is disabled causes a incomprehensible exception which hardly can be...
- 03:11 PM bug #9883 (New): Swagger-UI respects https
- 11:58 AM bug #9851: Problems during search for updates when network delay is too big
- Using socks proxy can defined by adding
proxyData/SOCKS/hasAuth=false
proxyData/SOCKS/host=127.0.0.1
proxyData/SO... - 11:43 AM bug #9851: Problems during search for updates when network delay is too big
- https://stackoverflow.com/questions/5857499/how-do-i-configure-the-proxy-settings-so-that-eclipse-can-download-new-pl...
- 11:23 AM task #2773 (New): TestingTermInitializer & CdmIntegrationTest must not use hardcoded DataTypeFactory
- 10:37 AM task #2773 (Feedback): TestingTermInitializer & CdmIntegrationTest must not use hardcoded DataTypeFactory
- not without investigating the code. Could you please take over this ticket?
- 08:32 AM bug #9882 (In Progress): Null argument when deleting description in bulkeditor
- The original problem is solved, but there is another issue. The deletion of the description elements is not solved by...
- 08:29 AM bug #9882 (Closed): Null argument when deleting description in bulkeditor
- mail AM:
null beim Löschen einer Description:
~~~ text
last remote method : http://api.cybertaxonomy.org:80/fl...
11/23/2021
- 11:12 PM feature request #2506 (In Progress): (Type-) Specimens may need status
- 10:58 PM feature request #7619: Registration Item: better layoout to avoid dao element overlapping
- Is this still an open issue? If yes, please adapt category/target version and/or project.
- 10:57 PM bug #8023: IndexOutOfBoundsException caused by RegistrationWorkingSet.getRegistrationDate()
- Andreas Müller wrote:
> Is this still an open issue? If yes please add category and adapt assignee and or target ver... - 10:41 PM feature request #804 (Feedback): Integrationtest for TextData.getPreferredLanguageString()
- Can you give a suggestion how the test should look like?
Which service/persistence layer method to use? - 10:21 PM feature request #694 (Resolved): FeatureTreeService and DescriptionElement implemented
- 08:35 PM task #2250 (Feedback): TODO use AbstractPagerImpl.hasResultsInRange() where possible
- Is this still an open issue?
- 07:45 PM bug #3811 (Feedback): Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
- Is this still an open issue?
- 07:27 PM task #2773: TestingTermInitializer & CdmIntegrationTest must not use hardcoded DataTypeFactory
- do you know if this is still an open issue?
- 07:13 PM bug #824 (Feedback): Rank labes and Rank names inconsitent
- I guess we can close this ticket?
- 01:14 PM bug #9881 (Resolved): Newly created collector team is not shown in selection dialog
- this should be fixed, please review.
- 08:08 AM bug #9881 (Closed): Newly created collector team is not shown in selection dialog
- After creating a new collector team from the selection dialog, the team does not show up in the selection dialog.
- 08:04 AM bug #9880 (New): Add active flag to user bulkeditor
- In some instances are a lot of inactive users, we should add the inactive flag to the bulkeditor and a possibility to...
11/22/2021
- 10:04 PM feature request #9879: Short title for field and derived units
- AM (aus Antwort auf die Mail von WGB):
Zu 2.: Es gibt im Modell schon den sog. „identityCache“ der für kürzere Lab... - 09:57 PM feature request #9879 (New): Short title for field and derived units
- WGB:
Der **Titel** mit seinem langen Text ist sehr groß – folgt vermutlich dem normalen Titelformat – kann man das... - 06:02 PM bug #9878 (Closed): show MediaSpecimen media source citations in registration items
- If lectotype= published image, image reference and refdetail not shown.
see marked areas for Vaadin
![](picture27... - 05:53 PM feature request #9877 (Closed): Account Registration UI
- implement a separate UI for the self registration of user accounts
- 05:52 PM feature request #9498 (In Progress): Password Recovery, Registration and Login Dialog Tab fully functional
11/19/2021
- 01:24 PM bug #9876: If no distribution has a status the mapUriParams are missing required parameters
- chaning the subject to better reflect the problem
- 12:04 PM bug #9876 (New): If no distribution has a status the mapUriParams are missing required parameters
- This was observed for Begonia aptera on FM prospective (http://portal.cybertaxonomy.org/flora-malesiana-prospective/c...
11/18/2021
- 05:50 PM feature request #9497 (Resolved): User self registration service
- Applied in changeset commit:cdmlib|002f394d7a5cc8b251f99b25b951d46410223979.
- 04:00 PM task #9875 (New): Atomize Salvador specimen data
- AM:
... Grundsätzlich würde es ja mehr Sinn machen die textbasierten Specimen zu versuchen zu atomisieren. Da sie ... - 03:49 PM feature request #8931: Taxeditor supports https
- i think we should move this ticket back to 5.15 or even to 5.14
- 03:45 PM feature request #8931 (Closed): Taxeditor supports https
- 03:00 PM feature request #8931 (Feedback): Taxeditor supports https
- Andreas Kohlbecker wrote:
> There are no problems connecting the production server api.cybertaxonomy.org:443
>
> ... - 02:51 PM bug #9873: Open in... in search view should show distribution editor
- Andreas Müller wrote:
> Maybe we can do a count before opening the distribution editor. If count is >100 (or any oth... - 08:52 AM bug #9873: Open in... in search view should show distribution editor
- Maybe we can do a count before opening the distribution editor. If count is >100 (or any other number) we may ask the...
- 08:16 AM bug #9873: Open in... in search view should show distribution editor
- mail WGB:
in principle I would expect the same behaviour as in the Taxon Navigator (i.e. opening the subtree) – so... - 02:34 PM feature request #2506: (Type-) Specimens may need status
- NaK:
Bei den Kakteen-Typus-Angaben stoße ich immer wieder auf „not preserved“ und „not found at..“, und um diese I... - 10:50 AM feature request #9859 (Resolved): Password Recovery UI
- ready for review
- 10:49 AM feature request #9498 (Closed): Password Recovery, Registration and Login Dialog Tab fully functional
- 08:14 AM bug #9874 (New): Calculate endemism automatically for higher levels (in cuba)
- mail WGB:
bei der Cuba Datenbank gibt’s ja eine eindeutige 3-stufige Hierarchie: Cuba – Cuba W/C/E – Provinz.
Es ...
11/17/2021
- 05:32 PM feature request #1580 (Duplicate): Doubtful flag or presence attribute for specimen in collection
- 05:26 PM bug #9861: Provide possibility to set a field as inapplicable
- This is a feature currently needed for Lactucinae. Therefore we should evaluate if we can implement it soon.
- 04:18 PM bug #9873 (New): Open in... in search view should show distribution editor
- We should discuss whether this should open only the selected taxon or the subtree of the selected taxon.
- 02:07 PM bug #9872 (New): Selecting cancel in "many records selected" dialogue for specimen tree editor has not effect.
- In specimen tree editor when search returns a larger number of records a warning appears that many records were selec...
- 11:59 AM feature request #9859: Password Recovery UI
- to enable the new ui in all cdm instances:
~~~
cd /opt/cdmserver/.cdmLibrary
find -maxdepth 2 -type f -name 'va... - 09:58 AM bug #9015 (Resolved): Comparator for Character Matrix creates strange result
- Hopefully this is fixed with rev 108ef8d8. With the current implementation I did not get this problem anymore. Please...
11/16/2021
- 04:02 PM feature request #9839 (New): Show distanceToGround on the occurrence page
- adapting ticket subject and category ....
- 12:52 PM feature request #9839: Show distanceToGround on the occurrence page
- If the footnote idea was only a workaround and the distance to water surface should be added to the titleCache please...
- 04:00 PM task #9871: Use identity cache for specimens in TaxEditor
- The search dialog part is mostly a duplicate for #5952
- 03:57 PM task #9871 (New): Use identity cache for specimens in TaxEditor
- In facts view and searches specimen labels are difficult to read as they use the titleCache which is often too long a...
- 01:15 PM feature request #9870 (New): [DISCUSS] Media for gathering event
- Maybe also gathering event needs media attached.
WGB: (in email discussion on #9095)
Was ist ein “reines Bild“,... - 12:05 PM feature request #9869 (Closed): Page showing IPNI authors used in PhycoBank
- Additional to the page "publish to IPNI" Zusatzdaten, Marker, "publish to IPNI"
https://www.phycobank.org/cdm_datapo... - 10:22 AM feature request #9868 (New): [DISCUSS] FeatureState map instead of Set
- Maybe we should implement inapllicable-if and only-applicable-if not as Set<FeatureState> but as Map<Feature,Applicab...
- 09:20 AM feature request #8775 (In Progress): Improve (rapid) data entry into characater matrix for categorical data
- 08:45 AM feature request #9858 (Closed): Add update result to aggregation algorithms
- Use the update result and works as expected, the code looks good as well.
- 08:42 AM bug #9843 (Resolved): When adding new descriptions it should not be necessary to load the complete matrix
- This is fixed now, please review.
11/15/2021
- 10:51 AM task #9866: Import further Salvador images
- see also #6252#note-13
- 10:50 AM task #6252: Implement image import for salvador
- WGB:
Kurz zum Verständnis: Es gibt 3 Arten von Salvador-Images:
1. Die hier referenzierten Zeichnungen aus der ... - 10:47 AM task #9867 (New): Import taxon level drawing from other publications
- WGB:
... Eine Reihe von zusätzlichen Taxon-Level Zeichnungen aus einer anderen Publikation (Witsberger, „Arboles ... - 09:41 AM bug #6296 (Closed): Simple search for common names returns duplicates
- Code cleaning done.
11/12/2021
- 04:05 PM feature request #9862: centralized password policy enforcement validator
- the commit:4b4dfff4 also contains a `@ValidPassword` annotation which can be used at model classes
please review - 03:58 PM feature request #9862 (Resolved): centralized password policy enforcement validator
- Applied in changeset commit:cdmlib|4b4dfff4929970b5b547c1f21b10359fd3f39c50.
- 02:37 PM feature request #9862 (Closed): centralized password policy enforcement validator
- Currently rules to validate the security of passwords are only implemented in the TaxEditor (`eu.etaxonomy.taxeditor....
- 03:48 PM task #9864 (Feedback): Evaluate "naturalearthdata" as possble dataset for maps
- http://www.diva-gis.org/Data has much better data for our purpose as they have also administrative regions of the lev...
- 02:51 PM task #9864 (Feedback): Evaluate "naturalearthdata" as possble dataset for maps
- Franck:
I also found recently an interesting dataset : https://www.naturalearthdata.com
It seems to be more up-to... - 03:21 PM task #9866 (New): Import further Salvador images
- Note: currently information/data is still missing for implementation
WGB (2019):
ich bereite einen Arbeitsauf... - 03:12 PM feature request #9865 (New): Formatter for common names of a taxon
- wGB:
bevor ich anfange, das selbst zu programmieren: Wie realistisch ist eine CDM-light Implementierung eines Comm... - 03:10 PM bug #6296: Simple search for common names returns duplicates
- Katja, can you have a look? Closing this ticket is needed to cleanup open Salvador issues and to finally close the ac...
- 02:55 PM bug #6207 (Closed): Import Salvador images
- Open issues were moved to other tickets therefore I guess we can close this ticket.
- 02:46 PM feature request #9853: [DISCUSS] Integrate collecting areas into fieldUnit/derivedUnit titleCache (or citation)
- WGB:
... tatsächlich – ich hatte wohl nur auf den Output gesehen. Santa Ana ist ein Departamento – sehr gut. Das s... - 02:43 PM feature request #9863 (New): Import Salvador municipios
- WGB:
... Municipio ist eigentlich die 3. Stufe – hier findet sich eine Liste: https://es.wikipedia.org/wiki/Anexo:... - 02:28 PM feature request #9839: Show distanceToGround on the occurrence page
- Henning, please can you answer Andreas M's questions?
- 12:19 PM feature request #9839: Show distanceToGround on the occurrence page
- Is there a reason why you moved this to "Reviewed Next Major Release"?
In the ticket description it is said that t... - 02:26 PM feature request #9859 (In Progress): Password Recovery UI
- 12:51 PM bug #9861 (In Progress): Provide possibility to set a field as inapplicable
- mail NK:
es gibt noch ein Desideratum, das wir im Projekt schon identifiziert hatten und das auch Murat schon mal ... - 12:48 PM feature request #9420: Harmonize Update- and ImportResult
- Discussion on how to use UpdateResult in aggregations:
KL:
leider gibt es noch keine Dokumentation, wann was ve... - 12:46 PM feature request #9420: Harmonize Update- and ImportResult
- Discussion on "include()" handling in Update/DeleteResult:
AM:
>Ich habe mir den Code jetzt noch nicht genau an... - 12:06 PM task #9650: Update all titleCaches after upgrade of cache strategies and formatters
- Updated all caches for databases on integration server
- 12:05 PM task #9849 (Closed): Remove trailing full stops from specimen titleCaches
- Andreas Müller wrote:
> @AK: This is fixed now but maybe we still need to adapt tests in dataportal.
All tests ar... - 11:49 AM feature request #6161 (Resolved): Service and webservice to recover forgotten passwords
- ... or we implement it similar to the ProgressMonitoring services which also handle asynchronous task but differently...
- 11:46 AM feature request #6161: Service and webservice to recover forgotten passwords
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > I added the new service to httpInvoker and CdmApplication... - 11:36 AM feature request #6161 (Feedback): Service and webservice to recover forgotten passwords
- Andreas Müller wrote:
> I added the new service to httpInvoker and CdmApplicationRemoteConfiguration
I am not s...
11/11/2021
- 04:54 PM feature request #6161: Service and webservice to recover forgotten passwords
- I added the new service to httpInvoker and CdmApplicationRemoteConfiguration
- 04:08 PM feature request #9858: Add update result to aggregation algorithms
- should be fixed. Please review.
- 04:06 PM bug #9843 (In Progress): When adding new descriptions it should not be necessary to load the complete matrix
- The blocking issue (#9858) is resolved now
- 03:58 PM feature request #8503: Create abstract base UI from RegistrationUI and use it for all UIs
- migration of existing UIs:
* DistributionStatusUI URGENT: this UI is already based on the UI interface only
* Sta... - 03:57 PM feature request #8503 (Closed): Create abstract base UI from RegistrationUI and use it for all UIs
- 03:55 PM feature request #8503 (Resolved): Create abstract base UI from RegistrationUI and use it for all UIs
- Applied in changeset commit:cdm-vaadin|4f8aab68e114332f01013b52b7e4f1d17a6582e8.
- 03:57 PM feature request #9860 (New): base all UIs on the AbstractUI
-
* DistributionStatusUI **URGENT**: this UI is already based on the UI interface only
* StatusEditorUI: still ba... - 11:24 AM feature request #9859 (Closed): Password Recovery UI
- implement a separate UI for Password Recovery
- 11:21 AM feature request #9498 (In Progress): Password Recovery, Registration and Login Dialog Tab fully functional
- reusing ticket instead of closing as duplicate
11/10/2021
- 10:45 PM feature request #9858 (Resolved): Add update result to aggregation algorithms
- Applied in changeset commit:cdmlib|4d8fec305c68624239caca8185d587fa62efd824.
- 09:04 PM feature request #9858: Add update result to aggregation algorithms
- AM:
... und habe bereits das UpdateResult in ein DeleteResult umgestellt, damit ggf. gelöschte Descriptions erfass... - 01:54 PM feature request #6161 (Resolved): Service and webservice to recover forgotten passwords
- 10:06 AM bug #9851: Problems during search for updates when network delay is too big
- Andreas Kohlbecker wrote:
> another option to simulate the situation would be to establish a ssl SOCKS proxy to a se... - 10:04 AM feature request #8822 (Worksforme): Handle exceptions caused by sortinex problems in cdm light export
- In the meanwhile the message mentioned the taxon node. I think this is ok.
- 09:41 AM bug #9857: TitleCache field of collector in specimen dialog should show collector title
- This should be fixed, also fixed in field unit details view.
Please review. - 09:40 AM bug #9857 (Resolved): TitleCache field of collector in specimen dialog should show collector title
- Applied in changeset commit:taxeditor|3cbd91d4793b62425eaf1dad93f07167687f981d.
11/09/2021
- 12:11 PM feature request #9839 (Feedback): Show distanceToGround on the occurrence page
- For distance to water surface and distance to substrate to become visible in the FieldUnit title cache the correspond...
- 12:07 PM feature request #9839: Show distanceToGround on the occurrence page
- The FieldUnit details are visible here: https://www.phycobank.org/cdm_dataportal/occurrence/ce3b36d8-6c6a-44b0-84dd-1...
- 11:42 AM bug #9851: Problems during search for updates when network delay is too big
- Whith no internet connection the message is the same "no updates available", but the log contains an exception.
~~... - 10:05 AM feature request #9858 (Closed): Add update result to aggregation algorithms
- ... for now it is enough to have the aggregated descriptions in the update result
- 10:01 AM bug #9857 (Closed): TitleCache field of collector in specimen dialog should show collector title
- im Dialog für Specimen sollte im Collector Feld der CollectorCache angezeigt werden, nicht der titleCache.
Könntes... - 09:59 AM bug #9856 (Resolved): Cancel of taxon selection in move synonym results in exception
- please review
- 09:54 AM bug #9856 (Closed): Cancel of taxon selection in move synonym results in exception
- mail WB:
Hallo,
versucht, ein Synonym (Agrostemma parviflora Cav. ex Steud. in Nomencl. Bot. 19. 1821) zu verschi...
11/08/2021
- 05:12 PM bug #9855: Specimen images sometimes show duplicates
- AK can you please review if the result is as expected.
KL can you please review the fix for ABCD. - 05:11 PM bug #9855: Specimen images sometimes show duplicates
- The reason for the duplicates was that in TaxonServiceImpl.listMedia() media were not deduplicate if e.g. an image of...
- 04:59 PM bug #9855 (Resolved): Specimen images sometimes show duplicates
- Applied in changeset commit:cdmlib|75539fa3b6e75f1972f2c3e3f90a3b395ea9d356.
- 11:41 AM bug #9855: Specimen images sometimes show duplicates
- Andreas Müller wrote:
> Duplication only happens in UniversalViewer (using the ManifestController.doTaxonMedia()) co... - 11:18 AM bug #9855 (In Progress): Specimen images sometimes show duplicates
- Duplication only happens in UniversalViewer (using the ManifestController.doTaxonMedia()) code. Switching to simple v...
- 11:02 AM bug #9855: Specimen images sometimes show duplicates
- AK:
eu.etaxonomy.cdm.remote.controller.iiif.ManifestController.doTaxonMedia() - 10:07 AM bug #9855 (Closed): Specimen images sometimes show duplicates
- e.g. https://campanula.e-taxonomy.net/cdm_dataportal/taxon/cdcacbda-11c0-4cb8-a2e0-8d7abc5ae756/images
- 03:27 PM bug #9843 (Feedback): When adding new descriptions it should not be necessary to load the complete matrix
- Therefore it is necessary that the aggregation result contains the uuids of the newly created or updated descriptions...
- 12:03 PM bug #9800 (In Progress): Open issues for character matrix
- Open in menu is added.
- 10:40 AM task #6841: [DISCUSS] Correct use of MediaSpecimen and derivates
- WGB:
Ich finde die Behandlung von eindeutig auf eine Unit bezogenen Fotos (oder anderen Medien) als Derived Unit v... - 10:19 AM bug #9851: Problems during search for updates when network delay is too big
- Andreas Müller wrote:
> Katja Luther wrote:
> > The checkForUpdates method shows "No updates available" only if ope... - 10:18 AM bug #9851: Problems during search for updates when network delay is too big
- Katja Luther wrote:
> The checkForUpdates method shows "No updates available" only if operation.resolveModal(monitor...
11/05/2021
- 01:42 PM bug #9851: Problems during search for updates when network delay is too big
- another option to simulate the situation would be to establish a ssl SOCKS proxy to a server in mexico and to pipe al...
- 12:36 PM bug #9854 (Resolved): In ABCD import type designations should not be added to all names of a homotypic group
- 12:35 PM bug #9854 (Closed): In ABCD import type designations should not be added to all names of a homotypic group
- The addTypeDesignation() method is used with the parameter addToAllNames = true, but it should be false.
- 12:25 PM feature request #9853 (New): [DISCUSS] Integrate collecting areas into fieldUnit/derivedUnit titleCache (or citation)
- Currently collecting areas beside countries are not integrated into the citation string (titleCache) for specimens/fi...
- 11:07 AM bug #6207 (Resolved): Import Salvador images
- WGB:
durch die Footnote wird die Quellenangabe im Titel eigentlich überflüssig, finde ich auch...
===
AM (20... - 10:47 AM task #9852 (New): Use rulebased creation of thumbnail links for Salvador images
- Currently salvador images are stored as full images and thumbnails on the media fileserver.
We could use the rulebas... - 10:16 AM task #6252 (Closed): Implement image import for salvador
- This seems to be fully imported. Further discussion on image handling in #6207.
11/04/2021
- 03:37 PM bug #9851 (In Progress): Problems during search for updates when network delay is too big
- The checkForUpdates method shows "No updates available" only if operation.resolveModal(monitor) gives back Status.STA...
- 01:56 PM bug #9851 (In Progress): Problems during search for updates when network delay is too big
- Users from mexico does not get the correct informations about new updates, maybe this is because the response needs t...
- 01:32 PM bug #9850 (New): Discussion and implementation how to expand the tree
- Actually the character matrix can only be collapsed and opened but we also need the possibility to open only a subtre...
- 12:28 PM bug #7342 (Resolved): incomplete bean initialization with specific data causes LIEs
- As I can't reproduce any of the LIEs anymore I suggest to close this ticket as worksforme (and remove target version)...
- 11:33 AM task #9849: Remove trailing full stops from specimen titleCaches
- @AK: This is fixed now but maybe we still need to adapt tests in dataportal.
- 11:28 AM task #9849 (Resolved): Remove trailing full stops from specimen titleCaches
- Applied in changeset commit:cdmlib|837670bb6622f49a3ca2d2bf6baabdbdf723df53.
- 10:24 AM task #9849 (Closed): Remove trailing full stops from specimen titleCaches
- As decided e.g. in #9788 we should not add trailing dots to titleCaches. If they are needed/wanted by publications th...
- 10:53 AM bug #7183: Creating a new reference in bulk editor the focus is not set to the newly created entity
- As this is back to "In Progress" I set it to current milestone.
- 10:04 AM bug #7183 (In Progress): Creating a new reference in bulk editor the focus is not set to the newly created entity
- Andreas Müller wrote:
> Katja Luther wrote:
> > now the selected item is not blue, but with a grey box around it to... - 10:29 AM feature request #6865 (Resolved): [DISCUSS] Separator for Code and Accession Number
- Applied in changeset commit:cdmlib|dbcf8d32533ad6132d3ef2d976cdcfe5761f8969.
- 09:29 AM bug #6298: Add delete button for areas for common names and for person in user
- Andreas Müller wrote:
> I guess this can be done fast - and is really needed
hmm, maybe not so much needed for di... - 09:26 AM bug #6298: Add delete button for areas for common names and for person in user
- I guess this can be done fast - and is really needed
11/03/2021
- 11:26 PM feature request #6874: Find better maps for salvador
- WGB (2017-07-21):
Nochmal die Area-Karte: die Umrisse der Dept. und des Landes stimmen nicht ganz überein (auffäl... - 11:23 PM feature request #9848 (New): Alternativ output string for specimen duplicates in specimen table view
- WGB:
mir wäre ein konkatenierter Output lieber, nach dem Muster:
Duplicates: B, barcode: B 10 0031037, preferred ... - 11:18 PM bug #9847 (New): Specimen table view citation must not include collection information
- e.g. on http://portal.cybertaxonomy.org/salvador/cdm_dataportal/taxon/98924180-7c12-453d-bcfc-f6f211b684e1/specimens ...
- 05:45 PM bug #4821 (Closed): Changing order of terms not possible
- Can be closed.
- 05:29 PM bug #5676: Sensu does not show up if no author exists for secundum reference
- Andreas Müller wrote:
> The only open question is "Also I wonder if it is wanted behavior, that the publication date... - 05:16 PM bug #6119 (Closed): Implement uuidAndTitleCache remote services
- The above links work both so I guess we can close this ticket.
- 04:19 PM bug #6119: Implement uuidAndTitleCache remote services
- http://test.e-taxonomy.eu/cdmserver/euromed/taxon/uuidAndTitleCache.json?limit=10&pattern=Abies%25&class=Taxon works...
- 04:17 PM bug #6119: Implement uuidAndTitleCache remote services
- A test could be http://test.e-taxonomy.eu/cdmserver/euromed/taxon/uuidAndTitleCache.json?limit=10&pattern=Abies%25
- 04:56 PM bug #9772 (Closed): Improve DTO usage for character matrix
- There are a couple of open issues (most important probably the loading which uses still model objects and therefore i...
- 04:28 PM feature request #5474 (Closed): TermEditor menu should be more structured
- The term menu is handled differently in the meanwhile anyway so I think we can close this ticket without having to ch...
- 03:38 PM bug #6105 (Closed): Make CdmPreferences editable in separate view
- 03:00 PM feature request #7275: [DISCUSS] Require email address for Users
- in #7276#note-11 we decided for the strategy to adding default dummy-email addresses to replace null values.
- 02:55 PM feature request #7275: [DISCUSS] Require email address for Users
- i am removing the last comment as this was misplaced here. This comment is a duplicate of #7276#note-11
- 02:34 PM bug #6480 (Closed): Re-saved by cascade in specimen bulk editor
- 02:32 PM bug #6480: Re-saved by cascade in specimen bulk editor
- Andreas Müller wrote:
> There is a problem with the message displayed in Confirm Deletion dialog. Looks like i18n do... - 02:33 PM bug #9846 (New): Improve delete configuration in specimen list editor
- copied from #6480:
adapt labels:
* "Delete Children" => "Delete **c**hildren", to be consistent
* Delete from ... - 02:24 PM bug #6299 (Closed): Error when deleting reference in bulk editor
- As we never got this exception anymore, we can close this ticket.
- 02:19 PM bug #6220 (Closed): Improve definition of orphaned taxon and synonym
- Andreas Müller wrote:
> Katja, can you please extract the open issues to a new ticket and close this one?
created... - 02:19 PM bug #9845 (New): Find a solution to keep "isOrphaned" in sync (java based and hql based)
- copied from #6220:
This is what I expected. So the critical question is here, how we can keep the java based defin... - 01:50 PM bug #9825 (Closed): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
- I tested on rem_conf_am and everything seems to work as expected.
- 12:11 PM bug #9825: Selection wizards for areas in mulitlanguage instances show every vocabulary twice
- Should be solved now. Can you please review?
- 12:10 PM bug #9825 (Resolved): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
- Applied in changeset commit:cdmlib|e3538034fba60c336b797d1ba58fbca89db817f8.
- 11:13 AM bug #9825 (Feedback): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
- Andreas Müller wrote:
> The method used is a DTO method VocabularyService.findVocabularyDtoByTermType() or finally o... - 01:47 PM feature request #9836 (Closed): Make nameUsedInSource available for secundum references
- This works now.
- 12:39 PM feature request #9836: Make nameUsedInSource available for secundum references
- Andreas Müller wrote:
> Currently it also does not show up for accepted taxa. This needs to be fixed before release.... - 12:29 PM feature request #9836 (Feedback): Make nameUsedInSource available for secundum references
- Currently it also does not show up for accepted taxa. This needs to be fixed before release.
- 12:03 PM feature request #9836 (Resolved): Make nameUsedInSource available for secundum references
- Can this be closed?
- 12:25 PM bug #9838 (Closed): Loading of details of categorical and quantitative data takes very long
- I think we can close this ticket.
Loading categorical data facts is much faster now and only a view objects are lo... - 12:15 PM bug #9816 (Closed): Implement correct handling of more than one element for a character
- Works as expected.
- 12:04 PM bug #9816 (Resolved): Implement correct handling of more than one element for a character
- Please do short review whether we can close this ticket.
- 11:25 AM bug #9816: Implement correct handling of more than one element for a character
- KL:
die schnelle Lösung wäre, dass einfach alle Daten, auch doppelte angezeigt werden - 12:08 PM bug #9844 (New): Add preference for disabling cloned descriptions
- copied from #9806:
Descriptions Clones, die an Specimens oder auch Taxa hängen sind derzeit noch normal bearbeitba... - 12:04 PM bug #9806 (Closed): Clones should not be editable in factual data view and elsewhere
- Andreas Müller wrote:
> This has been partly implemented in 5.28 I think. We should either split the ticket or imple... - 12:04 PM bug #9834 (Closed): Cannot create a nomenclatural standard abbreviation in the Reference author team
- Bug fixed, ticket closed THANKS!
- 12:02 PM bug #9807 (Closed): Matrix should not collapse after aggregation
- 12:02 PM bug #9807: Matrix should not collapse after aggregation
- Create a new ticket, because the original problem is solved but a nicer solution should be implemented.(#9843)
- 12:01 PM bug #9843 (Closed): When adding new descriptions it should not be necessary to load the complete matrix
- copied from #9807:
The current solution solves that the matrix is completely collapsed which is helpful. However the... - 11:16 AM bug #5863 (Worksforme): Specimen tab condensed table does not show Collection for single collection
11/02/2021
- 11:00 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- Andreas Kohlbecker wrote:
> please review
... and change the ticket subject to "Cannot create a nomenclatural s... - 04:28 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- please review
- 04:02 PM bug #9834 (Resolved): Cannot create a nomenclatural standard abbreviation in the Reference author team
- Applied in changeset commit:cdm-vaadin|ea112e7e945ad66460e4cdf9570f00597ed220c5.
- 02:39 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- see ![](picture338-1.png)
- 02:37 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- > Cannot create a nomenclatural standard abbreviation in the Reference author team.
Also das ist das Problem? Auto... - 02:14 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- Henning:
Um ein konkretes Beispiel zu haben in 100970 (paper Takano et al. 2014) gibt es einen bibliographischen ... - 12:13 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- Same problem in the Test system
I added in the test system a "test" name with the respective author, who cannot be... - 10:50 AM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- > Cannot create a nomenclatural standard abbreviation in the Reference author team.
Also das ist das Problem? Auto... - 06:33 PM bug #9825: Selection wizards for areas in mulitlanguage instances show every vocabulary twice
- The method used is a DTO method VocabularyService.findVocabularyDtoByTermType() or finally on DTO level TermVocabular...
- 12:09 PM bug #9825 (In Progress): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
- First implementation with commit:d955087e . However, it may not yet work due to generics (the current DefinedTermDaoI...
- 05:18 PM task #9837 (In Progress): updadte vaadin to latets 7.* version
- 05:17 PM bug #9831 (Closed): Exception in TermRepresentationUpdater if term does not exist
- definitely fixed, can be closed
- 02:54 PM bug #4821: Changing order of terms not possible
- please review
- 01:14 PM feature request #9836: Make nameUsedInSource available for secundum references
- Andreas Müller wrote:
> @Katja, can you remove the nameUsedInSource for synonyms then?
this is already implemente... - 01:12 PM feature request #9836: Make nameUsedInSource available for secundum references
- @Katja, can you remove the nameUsedInSource for synonyms then?
- 11:41 AM feature request #9836: Make nameUsedInSource available for secundum references
- mail NaK:
nach meiner Erfahrung bisher ist das name in source vor allem wichtig wenn das Taxon in der sec. Refer... - 09:34 AM feature request #9836: Make nameUsedInSource available for secundum references
- AM:
... ich wollte allerdings gerne nochmal klären, ob wir bei der Semantik des Feldes übereinstimmen.
Aus meiner S... - 11:39 AM bug #9838: Loading of details of categorical and quantitative data takes very long
- Tested all collection elements in nightly and could not find any problems. Please have another look and review.
- 10:22 AM bug #9838 (Resolved): Loading of details of categorical and quantitative data takes very long
- Katja Luther wrote:
> The long time loading was produced by a mistake in term manager.
>
> The extreme number of ... - 09:06 AM bug #9838: Loading of details of categorical and quantitative data takes very long
- This is at least partly handled in 5.28 as far as I can see. If needed can we split ticket?
How far is it solved? - 11:39 AM task #9842 (In Progress): Improve performance for loading DDS (RowWrapperDTO)
- Since #9772 we mostly use DTOs for the "RowWrapper" retrieval. However, the loading of the DTOs still uses model obje...
- 11:27 AM bug #9813: Details view should be available for literature (and default) descriptions in character matrix
- This should have high priority
- 11:24 AM bug #9807: Matrix should not collapse after aggregation
- Andreas Müller wrote:
> The current solution solves that the matrix is completely collapsed which is helpful. Howeve... - 11:20 AM bug #8243 (In Progress): Cdm Cache uses a lot of disk space
- 11:19 AM bug #8243: Cdm Cache uses a lot of disk space
- Katja Luther wrote:
> We should have a look on this with the new implementation because the matrix worked with descr... - 11:10 AM feature request #9841 (New): Possibility to open only a taxonomic subtree of a matrix
- E.g. by having a context menu for the subtree filter in the descriptive dataset editor and/or having an "open in" (wi...
- 11:06 AM bug #9806: Clones should not be editable in factual data view and elsewhere
- This has been partly implemented in 5.28 I think. We should either split the ticket or implement the second part (con...
- 11:03 AM feature request #7675 (Rejected): Make columns with default values togglable
- Katja Luther wrote:
> I do not understand the intention of this ticket, if a default value exist no exact values fro... - 08:53 AM bug #9816: Implement correct handling of more than one element for a character
- Katja Luther wrote:
>The count is integrated in the description elements and is filled during aggregation, it is not... - 08:28 AM bug #9816: Implement correct handling of more than one element for a character
- Andreas Müller wrote:
> Then the ticket is not correctly implemented as there is yellow 2x in existing as described ...
11/01/2021
- 09:32 PM bug #9831: Exception in TermRepresentationUpdater if term does not exist
- ahh, good you found this. It is actually not a problem of the update script but of the term loader which was introduc...
- 09:31 PM bug #9831 (Resolved): Exception in TermRepresentationUpdater if term does not exist
- Applied in changeset commit:cdmlib|43ca311a71a11f78f62f495ee73815fc69f5e0a6.
- 01:01 PM bug #9831 (Feedback): Exception in TermRepresentationUpdater if term does not exist
- I tested updating of the attached (attachment:cdm_production_caryophyllales_2018-11-16.sql.bz2) database on ws1 and i...
- 11:53 AM bug #9831: Exception in TermRepresentationUpdater if term does not exist
- Andreas, can you test this with an old database on WS1.
- 06:08 PM bug #9834 (Feedback): Cannot create a nomenclatural standard abbreviation in the Reference author team
- I cant reproduce the reported problem.
* Did you test this with the test system?
* If yes, could you give some mo... - 05:12 PM bug #6978 (Worksforme): NPE in DefaultReferenceCacheStrategy
- yes, this is fixed, ticket can be closed
- 03:56 PM bug #9816: Implement correct handling of more than one element for a character
- Then the ticket is not correctly implemented as there is yellow 2x in existing as described above. I also cannot beli...
- 03:45 PM bug #9816: Implement correct handling of more than one element for a character
- Andreas Müller wrote:
> I found an open issue: The literature description of Descripta prima in the test dataset for... - 03:19 PM bug #9816 (Feedback): Implement correct handling of more than one element for a character
- I found an open issue: The literature description of Descripta prima in the test dataset for bush color has 1 record ...
- 03:38 PM task #9833 (Closed): Remove cascading from descriptive dataset
- I intensively tested saving DDS with new ranks, feature trees, subtrees and descriptions and everything seems to work...
- 03:30 PM bug #9803 (Closed): Aggregating full dataset does not work
- Works as expected
- 03:23 PM bug #9807 (Feedback): Matrix should not collapse after aggregation
- The current solution solves that the matrix is completely collapsed which is helpful. However the aim is to keep it e...
- 03:14 PM task #9837 (Resolved): updadte vaadin to latets 7.* version
- 03:12 PM task #9837: updadte vaadin to latets 7.* version
- instead of updating vaadin itself it should be sufficient to upgrade the vulnerable jsoup dependency
- 02:59 PM task #9837: updadte vaadin to latets 7.* version
- updating any component to the latest vaadin 7 release requires the pro license:
Vaadin 7.7.17 was the last public ... - 12:46 PM task #9837 (In Progress): updadte vaadin to latets 7.* version
- due to https://vaadin.com/security/2021-10-27 we needed to update vaadin.server quickly.
Updating of vaadin-client... - 01:42 PM feature request #9840 (Duplicate): Add the possibility to enter new server
- We need a possibility to enter new servers into the json file, therefore it should be possible to add a new server fr...
- 01:09 PM bug #9838: Loading of details of categorical and quantitative data takes very long
- The long time loading was produced by a mistake in term manager.
The extreme number of loaded objects is caused by... - 01:06 PM bug #9838 (Closed): Loading of details of categorical and quantitative data takes very long
- The loading of the details view of categorical data or quantitative data takes really long and the loaded objects in ...
- 01:08 PM feature request #9839 (New): Show distanceToGround on the occurrence page
- Currently, only "alt." is displayed.
PhycoBank enables the following parameter:
Distance to water surface (= wa... - 09:28 AM feature request #9836: Make nameUsedInSource available for secundum references
- Andreas Müller wrote:
> We should also think about improved structuring for the preference page of the name/taxon de... - 09:18 AM feature request #9836 (In Progress): Make nameUsedInSource available for secundum references
- As a first step the name in Source field was added. We have to decide whether we want to have the own section in this...
10/29/2021
- 11:55 PM feature request #9836: Make nameUsedInSource available for secundum references
- We should also think about improved structuring for the preference page of the name/taxon details view preferences. C...
- 11:53 PM feature request #9836: Make nameUsedInSource available for secundum references
- Maybe the secundum source should get an own section similar to nomenclatural source so it becomes clearer what belong...
- 11:50 PM feature request #9836 (Closed): Make nameUsedInSource available for secundum references
- For some reason probably during #9549 the nameUsedInSource field for secundum references is not visible in the TaxEdi...
- 01:25 PM feature request #6050 (Closed): provide the possibility to choose the fields of the simple details view for names
- created a new ticket with remaining issues and close this ticket.
- 01:10 PM feature request #6050 (In Progress): provide the possibility to choose the fields of the simple details view for names
- Andreas Müller wrote:
> There are some functional issues:
>
> * ~~"Show appended phrase" can not be switched on~... - 01:24 PM bug #9835 (New): Remaining issues for NameDetailsView Configuration
- copied from #6050:
Additionally there are layout and labeling issues
* No German translation
* (maybe function... - 11:57 AM feature request #5972 (Closed): Prevent user from unwanted author and reference updates
- Andreas Müller wrote:
> It looks like it wokrs only for references until now. But we need it for all objects (if thi... - 11:50 AM feature request #5671 (In Progress): Name selection should not allow self referencing name relationships
- this is still an open issue
- 11:43 AM feature request #5365 (Closed): Add delete configurator to Media View image gallery
- The NPE is fixed in the meanwhile, so i close the ticket.
- 11:34 AM bug #4945 (In Progress): Right click menu for polytomous key node list view needs correct enabling
- Andreas Müller wrote:
> is this still an open issue?
Yes, the menu shows delete and refresh even though there is ... - 11:26 AM bug #4821: Changing order of terms not possible
- Andreas Müller wrote:
> For ordered terms it seems to work now (though there are other issues but they will be handl... - 11:26 AM bug #4821 (Resolved): Changing order of terms not possible
- Applied in changeset commit:taxeditor|8cebdfe48f07309665d5d9cdc8d39e05feec7478.
- 11:00 AM bug #9807: Matrix should not collapse after aggregation
- please review
- 10:02 AM bug #9807 (Resolved): Matrix should not collapse after aggregation
- this is fixed.
- 10:23 AM bug #9834 (Closed): Cannot create a nomenclatural standard abbreviation in the Reference author team
- Bug applies to Release/Test:
Unale to create nomenclatural authors, once a new reference or a in-reference is crea... - 09:50 AM bug #9803: Aggregating full dataset does not work
- tested on rem_conf_am. works with Structured dds test.
- 09:22 AM bug #9803 (Resolved): Aggregating full dataset does not work
- this is fixed.
10/28/2021
- 12:04 PM task #9833 (Resolved): Remove cascading from descriptive dataset
- Applied in changeset commit:cdmlib|f51cbc4e73cba3be1ebdd46613626b742698763e.
- 10:33 AM task #9833 (Closed): Remove cascading from descriptive dataset
- Cascading for descriptive system (feature tree), subtree filter (taxon nodes) and geo filter (named areas) is not nec...
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