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From 10/12/2021 to 11/10/2021

11/10/2021

10:45 PM feature request #9858 (Resolved): Add update result to aggregation algorithms
Applied in changeset commit:cdmlib|4d8fec305c68624239caca8185d587fa62efd824. Andreas Müller
09:04 PM feature request #9858: Add update result to aggregation algorithms
AM:
... und habe bereits das UpdateResult in ein DeleteResult umgestellt, damit ggf. gelöschte Descriptions erfass...
Andreas Müller
10:45 PM Revision 31b6fd3a (cdmlib): minor
Andreas Müller
10:45 PM Revision 4d8fec30 (cdmlib): fix #9858 add updatedObjects to aggregation result for aggregated descriptions
Andreas Müller
10:45 PM Revision 463a8a35 (cdmlib): cleanup
Andreas Müller
10:45 PM Revision 7bf6b5a7 (cdmlib): cleanup
Andreas Müller
10:45 PM Revision 42648459 (cdmlib): ref #8871 further unify aggregation classes and add ref #9858 some update result functionality
Andreas Müller
10:45 PM Revision 154a4700 (cdmlib): cleanup
Andreas Müller
10:45 PM Revision 38d61910 (cdmlib): add factory methods for CdmEntityIdentifier and use it in UpdateResult
Andreas Müller
10:44 PM Revision 479c7ac8 (cdmlib): add status to distribution toString and remove space in statedata toString
Andreas Müller
02:10 PM Revision 6b48abc9 (taxeditor): ref #9851: minor
Katja Luther
01:54 PM feature request #6161 (Resolved): Service and webservice to recover forgotten passwords
Andreas Kohlbecker
01:53 PM Revision 3ba8fefd (cdmlib): ref #6161 testing for error conditions, timeouts and making ratelimitor configurable
Andreas Kohlbecker
01:15 PM Revision 4394f4a4 (taxeditor): ref #9851: add org.eclipse.core.net
Katja Luther
01:06 PM Revision f1620324 (taxeditor): ref #9851: set proxy
Katja Luther
10:06 AM bug #9851: Problems during search for updates when network delay is too big
Andreas Kohlbecker wrote:
> another option to simulate the situation would be to establish a ssl SOCKS proxy to a se...
Andreas Kohlbecker
10:04 AM feature request #8822 (Worksforme): Handle exceptions caused by sortinex problems in cdm light export
In the meanwhile the message mentioned the taxon node. I think this is ok. Katja Luther
09:41 AM bug #9857: TitleCache field of collector in specimen dialog should show collector title
This should be fixed, also fixed in field unit details view.
Please review.
Katja Luther
09:40 AM bug #9857 (Resolved): TitleCache field of collector in specimen dialog should show collector title
Applied in changeset commit:taxeditor|3cbd91d4793b62425eaf1dad93f07167687f981d. Katja Luther
09:40 AM Revision 3cbd91d4 (taxeditor): fix #9857: collector field should show collector title
Katja Luther

11/09/2021

05:50 PM Revision 950c7b33 (cdmlib): javadoc
Andreas Müller
05:50 PM Revision 9ce05b21 (cdmlib): ref #9858 change aggregation result from UpdateResult to DeleteResult
Andreas Müller
05:50 PM Revision feb31341 (cdmlib): cleanup and javadoc
Andreas Müller
05:50 PM Revision b81ccc04 (cdmlib): ref #9858 adapt DeleteResult and UpdateResult to use common include method and add parameter to exclude exceptions and status from inclusion
Andreas Müller
05:50 PM Revision e244a4ff (cdmlib): cleanup
Andreas Müller
03:32 PM Revision b3c1efd7 (cdmlib): ref #6161 time oput test
Andreas Kohlbecker
02:41 PM Revision e121d84a (cdmlib): ref #6161 better exception handling
Andreas Kohlbecker
01:54 PM Revision 93f25a6b (cdmlib): ref #6161 implementing password recovery service & tests
Andreas Kohlbecker
01:54 PM Revision e185587b (cdmlib): avoiding confusion with 001-cdm.h2.sql and it's tmeplate for humans and IDEs
Andreas Kohlbecker
12:11 PM feature request #9839 (Feedback): Show distanceToGround on the occurrence page
For distance to water surface and distance to substrate to become visible in the FieldUnit title cache the correspond... Andreas Kohlbecker
12:07 PM feature request #9839: Show distanceToGround on the occurrence page
The FieldUnit details are visible here: https://www.phycobank.org/cdm_dataportal/occurrence/ce3b36d8-6c6a-44b0-84dd-1... Andreas Kohlbecker
11:42 AM bug #9851: Problems during search for updates when network delay is too big
Whith no internet connection the message is the same "no updates available", but the log contains an exception.
~~...
Katja Luther
10:05 AM feature request #9858 (Closed): Add update result to aggregation algorithms
... for now it is enough to have the aggregated descriptions in the update result Andreas Müller
10:01 AM bug #9857 (Closed): TitleCache field of collector in specimen dialog should show collector title
im Dialog für Specimen sollte im Collector Feld der CollectorCache angezeigt werden, nicht der titleCache.
Könntes...
Katja Luther
09:59 AM bug #9856 (Resolved): Cancel of taxon selection in move synonym results in exception
please review Katja Luther
09:54 AM bug #9856 (Closed): Cancel of taxon selection in move synonym results in exception
mail WB:
Hallo,
versucht, ein Synonym (Agrostemma parviflora Cav. ex Steud. in Nomencl. Bot. 19. 1821) zu verschi...
Katja Luther

11/08/2021

06:51 PM Revision 7812d3b5 (cdmlib): add empty controller again for TaxEditor remoting controller
Andreas Müller
05:19 PM Revision cebddcf1 (cdmlib): cleanup TaxonNodeDto constructor
Andreas Müller
05:12 PM bug #9855: Specimen images sometimes show duplicates
AK can you please review if the result is as expected.
KL can you please review the fix for ABCD.
Andreas Müller
05:11 PM bug #9855: Specimen images sometimes show duplicates
The reason for the duplicates was that in TaxonServiceImpl.listMedia() media were not deduplicate if e.g. an image of... Andreas Müller
04:59 PM bug #9855 (Resolved): Specimen images sometimes show duplicates
Applied in changeset commit:cdmlib|75539fa3b6e75f1972f2c3e3f90a3b395ea9d356. Andreas Müller
11:41 AM bug #9855: Specimen images sometimes show duplicates
Andreas Müller wrote:
> Duplication only happens in UniversalViewer (using the ManifestController.doTaxonMedia()) co...
Andreas Kohlbecker
11:18 AM bug #9855 (In Progress): Specimen images sometimes show duplicates
Duplication only happens in UniversalViewer (using the ManifestController.doTaxonMedia()) code. Switching to simple v... Andreas Müller
11:02 AM bug #9855: Specimen images sometimes show duplicates
AK:
eu.etaxonomy.cdm.remote.controller.iiif.ManifestController.doTaxonMedia()
Andreas Müller
10:07 AM bug #9855 (Closed): Specimen images sometimes show duplicates
e.g. https://campanula.e-taxonomy.net/cdm_dataportal/taxon/cdcacbda-11c0-4cb8-a2e0-8d7abc5ae756/images
Andreas Müller
05:07 PM Revision fb09cec0 (cdmlib): make commandline debugging available in cdmlib-remote
Andreas Müller
04:58 PM Revision c61b7547 (cdmlib): ref #9855 remove image duplicates for MediaSpecimen in ABCD import
Andreas Müller
04:58 PM Revision ece0f9f5 (cdmlib): fix #9855 deduplicate images in TaxonServiceImpl.listMedia()
Andreas Müller
04:56 PM Revision 3eed28dc (cdmlib): Revert "rename getMediainHierarchy to getMediaInHierarchy"
This reverts commit 10a9a8cd7811b77de3d877298448c650a3e117e4. Andreas Müller
04:50 PM Revision 10a9a8cd (cdmlib): rename getMediainHierarchy to getMediaInHierarchy
Andreas Müller
04:49 PM Revision 75539fa3 (cdmlib): fix #9855 fix duplicated images
Andreas Müller
04:35 PM Revision 41502854 (cdmlib): cleanup
Andreas Müller
03:27 PM bug #9843 (Feedback): When adding new descriptions it should not be necessary to load the complete matrix
Therefore it is necessary that the aggregation result contains the uuids of the newly created or updated descriptions... Katja Luther
02:25 PM Revision 0ba13d6d (taxeditor): avoid NPE
Katja Luther
12:03 PM bug #9800 (In Progress): Open issues for character matrix
Open in menu is added. Katja Luther
12:02 PM Revision a4461831 (taxeditor): ref #9800: add open in menu to character matrix
Katja Luther
10:54 AM Revision 669bb68e (cdmlib): simplify and javadoc for TaxonNodeDto constructor
Andreas Müller
10:40 AM task #6841: [DISCUSS] Correct use of MediaSpecimen and derivates
WGB:
Ich finde die Behandlung von eindeutig auf eine Unit bezogenen Fotos (oder anderen Medien) als Derived Unit v...
Andreas Müller
10:19 AM bug #9851: Problems during search for updates when network delay is too big
Andreas Müller wrote:
> Katja Luther wrote:
> > The checkForUpdates method shows "No updates available" only if ope...
Katja Luther
10:18 AM bug #9851: Problems during search for updates when network delay is too big
Katja Luther wrote:
> The checkForUpdates method shows "No updates available" only if operation.resolveModal(monitor...
Andreas Müller
09:41 AM Revision 70a3ae7c (taxeditor): ref #9851: change log level
Katja Luther

11/05/2021

01:42 PM bug #9851: Problems during search for updates when network delay is too big
another option to simulate the situation would be to establish a ssl SOCKS proxy to a server in mexico and to pipe al... Andreas Kohlbecker
12:36 PM bug #9854 (Resolved): In ABCD import type designations should not be added to all names of a homotypic group
Katja Luther
12:35 PM bug #9854 (Closed): In ABCD import type designations should not be added to all names of a homotypic group
The addTypeDesignation() method is used with the parameter addToAllNames = true, but it should be false. Katja Luther
12:25 PM feature request #9853 (New): [DISCUSS] Integrate collecting areas into fieldUnit/derivedUnit titleCache (or citation)
Currently collecting areas beside countries are not integrated into the citation string (titleCache) for specimens/fi... Andreas Müller
11:53 AM Revision f51e2b7c (cdmlib): add typedesignation only to designated name
Katja Luther
11:07 AM bug #6207 (Resolved): Import Salvador images
WGB:
durch die Footnote wird die Quellenangabe im Titel eigentlich überflüssig, finde ich auch...
===
AM (20...
Andreas Müller
10:47 AM task #9852 (New): Use rulebased creation of thumbnail links for Salvador images
Currently salvador images are stored as full images and thumbnails on the media fileserver.
We could use the rulebas...
Andreas Müller
10:16 AM task #6252 (Closed): Implement image import for salvador
This seems to be fully imported. Further discussion on image handling in #6207. Andreas Müller
09:27 AM Revision 1a894cf4 (taxeditor): add logger to UpdateHandler
Katja Luther

11/04/2021

03:37 PM bug #9851 (In Progress): Problems during search for updates when network delay is too big
The checkForUpdates method shows "No updates available" only if operation.resolveModal(monitor) gives back Status.STA... Katja Luther
01:56 PM bug #9851 (In Progress): Problems during search for updates when network delay is too big
Users from mexico does not get the correct informations about new updates, maybe this is because the response needs t... Katja Luther
01:32 PM bug #9850 (New): Discussion and implementation how to expand the tree
Actually the character matrix can only be collapsed and opened but we also need the possibility to open only a subtre... Katja Luther
12:28 PM bug #7342 (Resolved): incomplete bean initialization with specific data causes LIEs
As I can't reproduce any of the LIEs anymore I suggest to close this ticket as worksforme (and remove target version)... Andreas Müller
12:26 PM Revision c155ce7d (cdmlib): ref #7342 add statusNote to taxonNodes init strategy (just in case as locally I got NPE)
Andreas Müller
12:14 PM Revision 3ac9988f (cdmlib): cleanup
Andreas Müller
12:06 PM Revision e9e99357 (cdm-vaadin): fix #9849 adapt test data in vaadin
Andreas Müller
11:33 AM task #9849: Remove trailing full stops from specimen titleCaches
@AK: This is fixed now but maybe we still need to adapt tests in dataportal. Andreas Müller
11:28 AM task #9849 (Resolved): Remove trailing full stops from specimen titleCaches
Applied in changeset commit:cdmlib|837670bb6622f49a3ca2d2bf6baabdbdf723df53. Andreas Müller
10:24 AM task #9849 (Closed): Remove trailing full stops from specimen titleCaches
As decided e.g. in #9788 we should not add trailing dots to titleCaches. If they are needed/wanted by publications th... Andreas Müller
11:28 AM Revision 837670bb (cdmlib): fix #9849 further adapt test data
Andreas Müller
11:18 AM Revision dec4ce63 (cdmlib): cleanup
Andreas Müller
11:16 AM Revision 7d0a4ffe (cdmlib): ref #6865 remove some javadoc
Andreas Müller
11:15 AM Revision d973bbb0 (cdmlib): ref #9849 remove trailing dot from FieldUnitDefaultCacheStrategy
Andreas Müller
11:11 AM Revision 7d08e9ac (cdmlib): ref #9849 remove trailing dot from DerivedUnitDefaultCacheStrategy
Andreas Müller
10:53 AM bug #7183: Creating a new reference in bulk editor the focus is not set to the newly created entity
As this is back to "In Progress" I set it to current milestone. Andreas Müller
10:04 AM bug #7183 (In Progress): Creating a new reference in bulk editor the focus is not set to the newly created entity
Andreas Müller wrote:
> Katja Luther wrote:
> > now the selected item is not blue, but with a grey box around it to...
Katja Luther
10:29 AM feature request #6865 (Resolved): [DISCUSS] Separator for Code and Accession Number
Applied in changeset commit:cdmlib|dbcf8d32533ad6132d3ef2d976cdcfe5761f8969. Andreas Müller
10:29 AM Revision 06a4005c (cdmlib): ref #6865 fix test for DerivedUnitDefaultCacheStrategy formatting (cont.)
Andreas Müller
10:14 AM Revision bd4dde76 (cdmlib): ref #6865 fix test for DerivedUnitDefaultCacheStrategy formatting
Andreas Müller
10:11 AM Revision 5656b567 (cdmlib): some refactoring for NonReferencedObjectsDeleter
Andreas Müller
10:11 AM Revision dbcf8d32 (cdmlib): fix #6865 add colon seperator for collection code <-> number and add factory methods for DerivedUnitDefaultCacheStrategy
Andreas Müller
09:29 AM bug #6298: Add delete button for areas for common names and for person in user
Andreas Müller wrote:
> I guess this can be done fast - and is really needed
hmm, maybe not so much needed for di...
Andreas Müller
09:26 AM bug #6298: Add delete button for areas for common names and for person in user
I guess this can be done fast - and is really needed Andreas Müller

11/03/2021

11:26 PM feature request #6874: Find better maps for salvador
WGB (2017-07-21):
Nochmal die Area-Karte: die Umrisse der Dept. und des Landes stimmen nicht ganz überein (auffäl...
Andreas Müller
11:23 PM feature request #9848 (New): Alternativ output string for specimen duplicates in specimen table view
WGB:
mir wäre ein konkatenierter Output lieber, nach dem Muster:
Duplicates: B, barcode: B 10 0031037, preferred ...
Andreas Müller
11:18 PM bug #9847 (New): Specimen table view citation must not include collection information
e.g. on http://portal.cybertaxonomy.org/salvador/cdm_dataportal/taxon/98924180-7c12-453d-bcfc-f6f211b684e1/specimens ... Andreas Müller
10:01 PM Revision 0f56664f (cdmlib): remove seperate config package for NonReferencedObjectsDeleterConfigurator
Andreas Müller
09:55 PM Revision ca7fb73a (cdmlib-apps): ref #9798 fix check handling in MexicoSpanishCountriesActivator
Andreas Müller
09:53 PM Revision 36dfc014 (cdmlib-apps): adapt app-import to new identifier methods
Andreas Müller
09:52 PM Revision 4a5c4812 (cdmlib-apps): add DianthusIdentifierActivator
Andreas Müller
07:29 PM Revision 1207266e (cdmlib): ref #9772 , ref #9842 cleanup rowwrapper test
Andreas Müller
07:25 PM Revision d42f5dbb (cdmlib): cleanup
Andreas Müller
05:45 PM bug #4821 (Closed): Changing order of terms not possible
Can be closed. Andreas Müller
05:29 PM bug #5676: Sensu does not show up if no author exists for secundum reference
Andreas Müller wrote:
> The only open question is "Also I wonder if it is wanted behavior, that the publication date...
Andreas Müller
05:16 PM bug #6119 (Closed): Implement uuidAndTitleCache remote services
The above links work both so I guess we can close this ticket. Andreas Müller
04:19 PM bug #6119: Implement uuidAndTitleCache remote services
http://test.e-taxonomy.eu/cdmserver/euromed/taxon/uuidAndTitleCache.json?limit=10&pattern=Abies%25&class=Taxon works... Andreas Müller
04:17 PM bug #6119: Implement uuidAndTitleCache remote services
A test could be http://test.e-taxonomy.eu/cdmserver/euromed/taxon/uuidAndTitleCache.json?limit=10&pattern=Abies%25 Andreas Müller
04:56 PM bug #9772 (Closed): Improve DTO usage for character matrix
There are a couple of open issues (most important probably the loading which uses still model objects and therefore i... Andreas Müller
04:29 PM Revision e5e42d33 (cdm-server): Merge branch 'release/5.28.0' into develop
jenkins
04:29 PM Revision 0610a0fd (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
04:28 PM feature request #5474 (Closed): TermEditor menu should be more structured
The term menu is handled differently in the meanwhile anyway so I think we can close this ticket without having to ch... Andreas Müller
04:28 PM Revision 905735fb (cdm-server): updating poms for branch'release/5.28.0' with non-snapshot versions
jenkins
04:12 PM Revision d3cf0760 (cdmlib): ref #5676 fix NPE when clazz is not passed as paramter to getUuidAndTitleCache()
Andreas Müller
04:09 PM Revision 809b00e8 (cdm-webapp): Merge branch 'release/5.28.0' into develop
jenkins
04:09 PM Revision bd81a7f9 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
04:09 PM Revision a98ebcdf (cdm-webapp): updating poms for branch'release/5.28.0' with non-snapshot versions
jenkins
04:08 PM Revision e59fc922 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.28.0
jenkins
03:38 PM bug #6105 (Closed): Make CdmPreferences editable in separate view
Andreas Müller
03:31 PM Revision 8cae542d (cdm-vaadin): Merge branch 'release/5.28.0' into develop
jenkins
03:31 PM Revision 5e2d866c (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
03:29 PM Revision 97896da2 (cdm-dataportal): Merge branch 'release/5.28.0' into develop
jenkins
03:28 PM Revision d32b2586 (cdm-dataportal): updating poms for branch'release/5.28.0' with non-snapshot versions
jenkins
03:28 PM Revision 5803c151 (cdm-dataportal): release-preparation: production level css
jenkins
03:28 PM Revision 43c5a778 (taxeditor): Merge branch 'release/5.28.0' into develop
jenkins
03:28 PM Revision c5527b35 (taxeditor): Merge branch 'release/5.28.0'
jenkins
03:27 PM Revision 9b3e1a77 (cdm-vaadin): updating poms for branch'release/5.28.0' with non-snapshot versions
jenkins
03:27 PM Revision 1acdee26 (cdm-vaadin): jenkins bumping cdmlib.version to 5.28.0
jenkins
03:00 PM feature request #7275: [DISCUSS] Require email address for Users
in #7276#note-11 we decided for the strategy to adding default dummy-email addresses to replace null values. Andreas Kohlbecker
02:55 PM feature request #7275: [DISCUSS] Require email address for Users
i am removing the last comment as this was misplaced here. This comment is a duplicate of #7276#note-11 Andreas Kohlbecker
02:45 PM Revision 2ea48187 (cdmlib): Updating develop poms back to pre merge state
jenkins
02:45 PM Revision c6987df1 (cdmlib): Merge branch 'master' into develop
jenkins
02:45 PM Revision ea68116e (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
02:45 PM Revision b6c327d7 (cdmlib): Merge branch 'release/5.28.0'
jenkins
02:34 PM bug #6480 (Closed): Re-saved by cascade in specimen bulk editor
Katja Luther
02:32 PM bug #6480: Re-saved by cascade in specimen bulk editor
Andreas Müller wrote:
> There is a problem with the message displayed in Confirm Deletion dialog. Looks like i18n do...
Katja Luther
02:33 PM bug #9846 (New): Improve delete configuration in specimen list editor
copied from #6480:
adapt labels:
* "Delete Children" => "Delete **c**hildren", to be consistent
* Delete from ...
Katja Luther
02:24 PM bug #6299 (Closed): Error when deleting reference in bulk editor
As we never got this exception anymore, we can close this ticket. Katja Luther
02:23 PM Revision 2e843cf9 (cdmlib): updating poms for branch'release/5.28.0' with non-snapshot versions
jenkins
02:19 PM bug #6220 (Closed): Improve definition of orphaned taxon and synonym
Andreas Müller wrote:
> Katja, can you please extract the open issues to a new ticket and close this one?
created...
Katja Luther
02:19 PM bug #9845 (New): Find a solution to keep "isOrphaned" in sync (java based and hql based)
copied from #6220:
This is what I expected. So the critical question is here, how we can keep the java based defin...
Katja Luther
02:00 PM Revision 80e02d36 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.28.0-SNAPSHOT
jenkins
02:00 PM Revision dd882427 (cdm-webapp): updating poms for 5.29.0-SNAPSHOT development
jenkins
02:00 PM Revision d96f73f8 (cdm-webapp): updating poms for 5.28.0 branch with snapshot versions
jenkins
02:00 PM Revision 83ec09a2 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.29.0-SNAPSHOT
jenkins
01:59 PM Revision 7e1047c1 (cdm-server): updating poms for 5.29.0-SNAPSHOT development
jenkins
01:59 PM Revision 49667e09 (taxeditor): Updated version in pom / project files to taxeditor version : 5.29.0-SNAPSHOT and cdmlib version : 5.29.0-SNAPSHOT
jenkins
01:59 PM Revision 12e620bc (taxeditor): Updated version in pom / project files to taxeditor version : 5.28.0 and cdmlib version : 5.28.0
jenkins
01:58 PM Revision ace1ee59 (cdm-vaadin): jenkins bumping cdmlib.version to 5.28.0-SNAPSHOT
jenkins
01:58 PM Revision e2c2e9fa (cdm-dataportal): updating poms for 5.29.0-SNAPSHOT development
jenkins
01:58 PM Revision fc696dd8 (cdm-vaadin): updating poms for 5.29.0-SNAPSHOT development
jenkins
01:58 PM Revision 7276d7de (cdm-vaadin): updating poms for 5.28.0 branch with snapshot versions
jenkins
01:58 PM Revision f8fb8bbd (cdm-vaadin): jenkins bumping cdmlib.version to 5.29.0-SNAPSHOT
jenkins
01:54 PM Revision 4767bb1e (cdmlib): updating poms for 5.29.0-SNAPSHOT development
jenkins
01:50 PM bug #9825 (Closed): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
I tested on rem_conf_am and everything seems to work as expected. Andreas Müller
12:11 PM bug #9825: Selection wizards for areas in mulitlanguage instances show every vocabulary twice
Should be solved now. Can you please review? Andreas Müller
12:10 PM bug #9825 (Resolved): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
Applied in changeset commit:cdmlib|e3538034fba60c336b797d1ba58fbca89db817f8. Andreas Müller
11:13 AM bug #9825 (Feedback): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
Andreas Müller wrote:
> The method used is a DTO method VocabularyService.findVocabularyDtoByTermType() or finally o...
Katja Luther
01:47 PM feature request #9836 (Closed): Make nameUsedInSource available for secundum references
This works now. Andreas Müller
12:39 PM feature request #9836: Make nameUsedInSource available for secundum references
Andreas Müller wrote:
> Currently it also does not show up for accepted taxa. This needs to be fixed before release....
Katja Luther
12:29 PM feature request #9836 (Feedback): Make nameUsedInSource available for secundum references
Currently it also does not show up for accepted taxa. This needs to be fixed before release. Andreas Müller
12:03 PM feature request #9836 (Resolved): Make nameUsedInSource available for secundum references
Can this be closed? Katja Luther
12:37 PM Revision bd8cded2 (taxeditor): ref #9836: fix problem of missing name in source
Katja Luther
12:25 PM bug #9838 (Closed): Loading of details of categorical and quantitative data takes very long
I think we can close this ticket.
Loading categorical data facts is much faster now and only a view objects are lo...
Andreas Müller
12:15 PM bug #9816 (Closed): Implement correct handling of more than one element for a character
Works as expected. Andreas Müller
12:04 PM bug #9816 (Resolved): Implement correct handling of more than one element for a character
Please do short review whether we can close this ticket. Katja Luther
11:25 AM bug #9816: Implement correct handling of more than one element for a character
KL:
die schnelle Lösung wäre, dass einfach alle Daten, auch doppelte angezeigt werden
Andreas Müller
12:10 PM Revision e3538034 (cdmlib): fix #9825 implement deduplication for list(Set) methods in term and vocabulary services
Andreas Müller
12:10 PM Revision 7b64453a (cdmlib): cleanup
Andreas Müller
12:08 PM bug #9844 (New): Add preference for disabling cloned descriptions
copied from #9806:
Descriptions Clones, die an Specimens oder auch Taxa hängen sind derzeit noch normal bearbeitba...
Katja Luther
12:04 PM bug #9806 (Closed): Clones should not be editable in factual data view and elsewhere
Andreas Müller wrote:
> This has been partly implemented in 5.28 I think. We should either split the ticket or imple...
Katja Luther
12:04 PM bug #9834 (Closed): Cannot create a nomenclatural standard abbreviation in the Reference author team
Bug fixed, ticket closed THANKS! Wolf-Henning Kusber
12:02 PM bug #9807 (Closed): Matrix should not collapse after aggregation
Katja Luther
12:02 PM bug #9807: Matrix should not collapse after aggregation
Create a new ticket, because the original problem is solved but a nicer solution should be implemented.(#9843) Katja Luther
12:01 PM bug #9843 (Closed): When adding new descriptions it should not be necessary to load the complete matrix
copied from #9807:
The current solution solves that the matrix is completely collapsed which is helpful. However the...
Katja Luther
11:25 AM Revision 8b6867bf (cdm-dataportal): adapting test configuration to https - 2
Andreas Kohlbecker
11:22 AM Revision be6ae017 (cdm-dataportal): adapting test configuration to https
Andreas Kohlbecker
11:16 AM bug #5863 (Worksforme): Specimen tab condensed table does not show Collection for single collection
Andreas Kohlbecker
10:31 AM Revision e551d0b2 (taxeditor): ref #9805: adapt labels
Katja Luther
09:50 AM Revision 01ec16e7 (cdmlib): revert out comment code
Katja Luther

11/02/2021

11:10 PM Revision 5024f433 (cdmlib): javadoc and minor
Andreas Müller
11:09 PM Revision 1774e407 (cdmlib): ref #9804 improve handling for empty categorical data (empty or null value state data) (cont.)
Andreas Müller
11:07 PM Revision 9b8a8049 (cdmlib): ref #9804 improve handling for empty categorical data (empty or null value state data)
Andreas Müller
11:00 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
Andreas Kohlbecker wrote:
> please review
... and change the ticket subject to "Cannot create a nomenclatural s...
Andreas Kohlbecker
04:28 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
please review Andreas Kohlbecker
04:02 PM bug #9834 (Resolved): Cannot create a nomenclatural standard abbreviation in the Reference author team
Applied in changeset commit:cdm-vaadin|ea112e7e945ad66460e4cdf9570f00597ed220c5. Andreas Kohlbecker
02:39 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
see ![](picture338-1.png) Andreas Kohlbecker
02:37 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
> Cannot create a nomenclatural standard abbreviation in the Reference author team.
Also das ist das Problem? Auto...
Andreas Kohlbecker
02:14 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
Henning:
Um ein konkretes Beispiel zu haben in 100970 (paper Takano et al. 2014) gibt es einen bibliographischen ...
Andreas Kohlbecker
12:13 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
Same problem in the Test system
I added in the test system a "test" name with the respective author, who cannot be...
Wolf-Henning Kusber
10:50 AM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
> Cannot create a nomenclatural standard abbreviation in the Reference author team.
Also das ist das Problem? Auto...
Wolf-Henning Kusber
06:44 PM Revision f8b73f93 (cdmlib): cleanup
Andreas Müller
06:33 PM bug #9825: Selection wizards for areas in mulitlanguage instances show every vocabulary twice
The method used is a DTO method VocabularyService.findVocabularyDtoByTermType() or finally on DTO level TermVocabular... Andreas Müller
12:09 PM bug #9825 (In Progress): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
First implementation with commit:d955087e . However, it may not yet work due to generics (the current DefinedTermDaoI... Andreas Müller
06:28 PM Revision 259c70d2 (cdmlib): ref #9825 fix failing vocDto test
Andreas Müller
06:20 PM Revision 64c991e6 (cdmlib): add javadoc and cleanup
Andreas Müller
05:27 PM Revision dd1494d6 (cdmlib): add schema updater for next schema update
Andreas Müller
05:18 PM task #9837 (In Progress): updadte vaadin to latets 7.* version
Andreas Kohlbecker
05:17 PM bug #9831 (Closed): Exception in TermRepresentationUpdater if term does not exist
definitely fixed, can be closed Andreas Kohlbecker
04:02 PM Revision ea112e7e (cdm-vaadin): fix #9834 adding lost nomenclaturalTitleButton again & removing debug code modification
Andreas Kohlbecker
04:01 PM Revision 4eccb67a (cdmlib): ref #9825 revert "failing" deduplication and add test showing that deduplication works on dao level
Andreas Müller
03:59 PM Revision 368ed797 (cdmlib): cleanup
Andreas Müller
03:55 PM Revision 58bc40a9 (cdm-vaadin): improving spacing of team and person fiels elements
Andreas Kohlbecker
02:54 PM bug #4821: Changing order of terms not possible
please review Katja Luther
02:32 PM Revision be9359f3 (taxeditor): ref #9838: change order of ui element creation and setting entity in collection elements - continue
Katja Luther
01:47 PM Revision 6d9a00e0 (taxeditor): ref #9821: disable sources for computed and cloned descriptions - continue
Katja Luther
01:14 PM feature request #9836: Make nameUsedInSource available for secundum references
Andreas Müller wrote:
> @Katja, can you remove the nameUsedInSource for synonyms then?
this is already implemente...
Katja Luther
01:12 PM feature request #9836: Make nameUsedInSource available for secundum references
@Katja, can you remove the nameUsedInSource for synonyms then? Andreas Müller
11:41 AM feature request #9836: Make nameUsedInSource available for secundum references
mail NaK:
nach meiner Erfahrung bisher ist das name in source vor allem wichtig wenn das Taxon in der sec. Refer...
Katja Luther
09:34 AM feature request #9836: Make nameUsedInSource available for secundum references
AM:
... ich wollte allerdings gerne nochmal klären, ob wir bei der Semantik des Feldes übereinstimmen.
Aus meiner S...
Andreas Müller
12:11 PM Revision d0198e95 (taxeditor): ref #9821: disable sources for computed and cloned descriptions
Katja Luther
12:06 PM Revision d955087e (cdmlib): ref #9825 try to fix duplicated vocabularies in distribution editor (probably not working yet due to generics)
Andreas Müller
11:47 AM Revision c585a089 (cdmlib): remove commented code from TermVocabularyDao.findVocabularyDtoByTermTypes(termTypes, pattern, includeSubtypes)
Andreas Müller
11:39 AM bug #9838: Loading of details of categorical and quantitative data takes very long
Tested all collection elements in nightly and could not find any problems. Please have another look and review. Katja Luther
10:22 AM bug #9838 (Resolved): Loading of details of categorical and quantitative data takes very long
Katja Luther wrote:
> The long time loading was produced by a mistake in term manager.
>
> The extreme number of ...
Katja Luther
09:06 AM bug #9838: Loading of details of categorical and quantitative data takes very long
This is at least partly handled in 5.28 as far as I can see. If needed can we split ticket?
How far is it solved?
Andreas Müller
11:39 AM task #9842 (In Progress): Improve performance for loading DDS (RowWrapperDTO)
Since #9772 we mostly use DTOs for the "RowWrapper" retrieval. However, the loading of the DTOs still uses model obje... Andreas Müller
11:27 AM bug #9813: Details view should be available for literature (and default) descriptions in character matrix
This should have high priority Andreas Müller
11:24 AM bug #9807: Matrix should not collapse after aggregation
Andreas Müller wrote:
> The current solution solves that the matrix is completely collapsed which is helpful. Howeve...
Andreas Müller
11:20 AM bug #8243 (In Progress): Cdm Cache uses a lot of disk space
Andreas Müller
11:19 AM bug #8243: Cdm Cache uses a lot of disk space
Katja Luther wrote:
> We should have a look on this with the new implementation because the matrix worked with descr...
Andreas Müller
11:10 AM feature request #9841 (New): Possibility to open only a taxonomic subtree of a matrix
E.g. by having a context menu for the subtree filter in the descriptive dataset editor and/or having an "open in" (wi... Andreas Müller
11:06 AM bug #9806: Clones should not be editable in factual data view and elsewhere
This has been partly implemented in 5.28 I think. We should either split the ticket or implement the second part (con... Andreas Müller
11:03 AM feature request #7675 (Rejected): Make columns with default values togglable
Katja Luther wrote:
> I do not understand the intention of this ticket, if a default value exist no exact values fro...
Andreas Müller
10:45 AM Revision defbfd3c (taxeditor): ref #9836: show name in source only for taxa
Katja Luther
10:28 AM Revision 0415fbc2 (taxeditor): ref #9836: first implementation for own section for secundum source - still not used
Katja Luther
10:20 AM Revision d7ad25d9 (taxeditor): ref #9838: change order of ui element creation and setting entity in collection elements
Katja Luther
09:49 AM Revision e95c1bbd (cdmlib): ref #9816: all data need to be shown in displayString
Katja Luther
08:53 AM bug #9816: Implement correct handling of more than one element for a character
Katja Luther wrote:
>The count is integrated in the description elements and is filled during aggregation, it is not...
Andreas Müller
08:28 AM bug #9816: Implement correct handling of more than one element for a character
Andreas Müller wrote:
> Then the ticket is not correctly implemented as there is yellow 2x in existing as described ...
Katja Luther

11/01/2021

09:32 PM bug #9831: Exception in TermRepresentationUpdater if term does not exist
ahh, good you found this. It is actually not a problem of the update script but of the term loader which was introduc... Andreas Müller
09:31 PM bug #9831 (Resolved): Exception in TermRepresentationUpdater if term does not exist
Applied in changeset commit:cdmlib|43ca311a71a11f78f62f495ee73815fc69f5e0a6. Andreas Müller
01:01 PM bug #9831 (Feedback): Exception in TermRepresentationUpdater if term does not exist
I tested updating of the attached (attachment:cdm_production_caryophyllales_2018-11-16.sql.bz2) database on ws1 and i... Andreas Kohlbecker
11:53 AM bug #9831: Exception in TermRepresentationUpdater if term does not exist
Andreas, can you test this with an old database on WS1. Andreas Müller
09:30 PM Revision f4543616 (cdmlib): cleanup
Andreas Müller
09:30 PM Revision 43ca311a (cdmlib): fix #9831, ref #9477 fix failing term loading for unordered missing terms
Andreas Müller
06:08 PM bug #9834 (Feedback): Cannot create a nomenclatural standard abbreviation in the Reference author team
I cant reproduce the reported problem.
* Did you test this with the test system?
* If yes, could you give some mo...
Andreas Kohlbecker
05:12 PM bug #6978 (Worksforme): NPE in DefaultReferenceCacheStrategy
yes, this is fixed, ticket can be closed Andreas Kohlbecker
04:26 PM Revision a5f3077d (cdm-vaadin): ref #9837 updating vaadin to latest open source version and updating jsoup to fix https://vaadin.com/security/2021-10-27 by our self - commented, due to code incompatibility
Andreas Kohlbecker
03:56 PM bug #9816: Implement correct handling of more than one element for a character
Then the ticket is not correctly implemented as there is yellow 2x in existing as described above. I also cannot beli... Andreas Müller
03:45 PM bug #9816: Implement correct handling of more than one element for a character
Andreas Müller wrote:
> I found an open issue: The literature description of Descripta prima in the test dataset for...
Katja Luther
03:19 PM bug #9816 (Feedback): Implement correct handling of more than one element for a character
I found an open issue: The literature description of Descripta prima in the test dataset for bush color has 1 record ... Andreas Müller
03:38 PM task #9833 (Closed): Remove cascading from descriptive dataset
I intensively tested saving DDS with new ranks, feature trees, subtrees and descriptions and everything seems to work... Andreas Müller
03:30 PM bug #9803 (Closed): Aggregating full dataset does not work
Works as expected Andreas Müller
03:23 PM bug #9807 (Feedback): Matrix should not collapse after aggregation
The current solution solves that the matrix is completely collapsed which is helpful. However the aim is to keep it e... Andreas Müller
03:14 PM task #9837 (Resolved): updadte vaadin to latets 7.* version
Andreas Kohlbecker
03:12 PM task #9837: updadte vaadin to latets 7.* version
instead of updating vaadin itself it should be sufficient to upgrade the vulnerable jsoup dependency Andreas Kohlbecker
02:59 PM task #9837: updadte vaadin to latets 7.* version
updating any component to the latest vaadin 7 release requires the pro license:
Vaadin 7.7.17 was the last public ...
Andreas Kohlbecker
12:46 PM task #9837 (In Progress): updadte vaadin to latets 7.* version
due to https://vaadin.com/security/2021-10-27 we needed to update vaadin.server quickly.
Updating of vaadin-client...
Andreas Kohlbecker
03:14 PM Revision 6ad3a403 (cdm-vaadin): ref #9837 updating vaadin to latest open source version and updating jsoup to fix https://vaadin.com/security/2021-10-27 by our self
Andreas Kohlbecker
01:42 PM feature request #9840 (New): Add the possibility to enter new server
We need a possibility to enter new servers into the json file, therefore it should be possible to add a new server fr... Katja Luther
01:09 PM bug #9838: Loading of details of categorical and quantitative data takes very long
The long time loading was produced by a mistake in term manager.
The extreme number of loaded objects is caused by...
Katja Luther
01:06 PM bug #9838 (Closed): Loading of details of categorical and quantitative data takes very long
The loading of the details view of categorical data or quantitative data takes really long and the loaded objects in ... Katja Luther
01:08 PM feature request #9839 (New): Show distanceToGround on the occurrence page
Currently, only "alt." is displayed.
PhycoBank enables the following parameter:
Distance to water surface (= wa...
Wolf-Henning Kusber
12:47 PM Revision d5673a19 (cdm-vaadin): ref #9837 updating vaadin-server
Andreas Kohlbecker
09:28 AM feature request #9836: Make nameUsedInSource available for secundum references
Andreas Müller wrote:
> We should also think about improved structuring for the preference page of the name/taxon de...
Katja Luther
09:18 AM feature request #9836 (In Progress): Make nameUsedInSource available for secundum references
As a first step the name in Source field was added. We have to decide whether we want to have the own section in this... Katja Luther
09:16 AM Revision 5a27a3cc (taxeditor): ref #9836: add name in Source for Secundum source
Katja Luther

10/29/2021

11:55 PM feature request #9836: Make nameUsedInSource available for secundum references
We should also think about improved structuring for the preference page of the name/taxon details view preferences. C... Andreas Müller
11:53 PM feature request #9836: Make nameUsedInSource available for secundum references
Maybe the secundum source should get an own section similar to nomenclatural source so it becomes clearer what belong... Andreas Müller
11:50 PM feature request #9836 (Closed): Make nameUsedInSource available for secundum references
For some reason probably during #9549 the nameUsedInSource field for secundum references is not visible in the TaxEdi... Andreas Müller
01:25 PM feature request #6050 (Closed): provide the possibility to choose the fields of the simple details view for names
created a new ticket with remaining issues and close this ticket. Katja Luther
01:10 PM feature request #6050 (In Progress): provide the possibility to choose the fields of the simple details view for names
Andreas Müller wrote:
> There are some functional issues:
>
> * ~~"Show appended phrase" can not be switched on~...
Katja Luther
01:24 PM bug #9835 (New): Remaining issues for NameDetailsView Configuration
copied from #6050:
Additionally there are layout and labeling issues
* No German translation
* (maybe function...
Katja Luther
01:19 PM Revision 244abf53 (taxeditor): avoid NPE
Katja Luther
11:57 AM feature request #5972 (Closed): Prevent user from unwanted author and reference updates
Andreas Müller wrote:
> It looks like it wokrs only for references until now. But we need it for all objects (if thi...
Katja Luther
11:50 AM feature request #5671 (In Progress): Name selection should not allow self referencing name relationships
this is still an open issue Katja Luther
11:43 AM feature request #5365 (Closed): Add delete configurator to Media View image gallery
The NPE is fixed in the meanwhile, so i close the ticket. Katja Luther
11:34 AM bug #4945 (In Progress): Right click menu for polytomous key node list view needs correct enabling
Andreas Müller wrote:
> is this still an open issue?
Yes, the menu shows delete and refresh even though there is ...
Katja Luther
11:26 AM bug #4821: Changing order of terms not possible
Andreas Müller wrote:
> For ordered terms it seems to work now (though there are other issues but they will be handl...
Katja Luther
11:26 AM bug #4821 (Resolved): Changing order of terms not possible
Applied in changeset commit:taxeditor|8cebdfe48f07309665d5d9cdc8d39e05feec7478. Katja Luther
11:25 AM Revision 8cebdfe4 (taxeditor): fix #4821: do not show possibility to move between terms for anordered terms
Katja Luther
11:00 AM bug #9807: Matrix should not collapse after aggregation
please review Katja Luther
10:02 AM bug #9807 (Resolved): Matrix should not collapse after aggregation
this is fixed. Katja Luther
10:37 AM Revision 7ffca7dc (taxeditor): revert expand the matrix completely
Katja Luther
10:23 AM bug #9834 (Closed): Cannot create a nomenclatural standard abbreviation in the Reference author team
Bug applies to Release/Test:
Unale to create nomenclatural authors, once a new reference or a in-reference is crea...
Wolf-Henning Kusber
10:00 AM Revision a9136afc (taxeditor): expand the matrix completely
Katja Luther
09:50 AM bug #9803: Aggregating full dataset does not work
tested on rem_conf_am. works with Structured dds test. Katja Luther
09:22 AM bug #9803 (Resolved): Aggregating full dataset does not work
this is fixed. Katja Luther
09:24 AM Revision 254fe5a2 (taxeditor): code cleaning
Katja Luther
09:17 AM Revision e9941985 (cdmlib): ref #9803: fix not loaded subtree in DDS
Katja Luther
08:52 AM Revision 727c9cd2 (taxeditor): expand matrix after aggregation
Katja Luther

10/28/2021

04:11 PM Revision 447a6c83 (taxeditor): adapt getCurrentSampleDesignation to new getIdentifier methods
Andreas Müller
04:01 PM Revision a2af4a1c (cdmlib): adapt getIdentifier methods (cont.)
Andreas Müller
03:56 PM Revision 18f5dece (cdmlib): adapt getIdentifier methods
Andreas Müller
03:18 PM Revision dfb6afeb (taxeditor): fix getCurrentSampleDesignation
Katja Luther
01:33 PM Revision b27c9233 (taxeditor): increase server connect timeout from 1s to 3s
Andreas Müller
01:33 PM Revision 0c45efba (taxeditor): typo
Andreas Müller
12:04 PM task #9833 (Resolved): Remove cascading from descriptive dataset
Applied in changeset commit:cdmlib|f51cbc4e73cba3be1ebdd46613626b742698763e. Andreas Müller
10:33 AM task #9833 (Closed): Remove cascading from descriptive dataset
Cascading for descriptive system (feature tree), subtree filter (taxon nodes) and geo filter (named areas) is not nec... Andreas Müller
12:03 PM Revision f51cbc4e (cdmlib): fix #9833 remove cascading in DDS to descriptions
Andreas Müller
12:02 PM Revision 1ac5959f (cdmlib): preliminary ignore test as it does not run in test suite
Andreas Müller
12:01 PM Revision c3decf23 (cdmlib): cleanup
Andreas Müller
11:45 AM Revision cfc64b74 (taxeditor): cleanup
Andreas Müller
11:01 AM Revision 7e908a79 (cdmlib): cleanup
Andreas Müller
10:45 AM Revision 79fadb72 (cdmlib): rename DescriptiveDataSetServiceTest
Andreas Müller
10:41 AM Revision aae4cb3d (taxeditor): fix term caching for term type and avoid doubled call of populate terms
Katja Luther
10:39 AM Revision dc8980a4 (cdmlib): ref #9833 remove cascading in DDS to descriptiveSystem, geoFilter and subtreeFilter
Andreas Müller
09:48 AM Revision 75f21cbb (taxeditor): minor
Katja Luther
01:27 AM Revision 19744d89 (taxeditor): cleanup
Andreas Müller

10/27/2021

06:49 PM feature request #9832 (New): Make StatisticalMeasurementValues and StateData available in SupplementalData view
Currently it is not possible to select those in details view for factual data. Only the categorical/quantitative data... Andreas Müller
06:01 PM bug #7634: Timeout/Performance problems in Taxeditor
WGB:
weiß ich nicht – habe schon länger nicht mehr von zu Hause aus mit dem TE gearbeitet.
Andreas Müller
05:34 PM Revision 97fb032d (cdmlib): first steps for rowwrapper tests
Katja Luther
04:46 PM bug #9816: Implement correct handling of more than one element for a character
Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > This works as expected. Only a few minor...
Katja Luther
01:44 PM bug #9816 (Resolved): Implement correct handling of more than one element for a character
Katja Luther wrote:
> Andreas Müller wrote:
> > This works as expected. Only a few minor thinks:
> >
> > * for ...
Katja Luther
01:37 PM bug #9816: Implement correct handling of more than one element for a character
Andreas Müller wrote:
> This works as expected. Only a few minor thinks:
>
> * for users it might be unclear why...
Katja Luther
11:43 AM bug #9816 (Feedback): Implement correct handling of more than one element for a character
This works as expected. Only a few minor thinks:
* for users it might be unclear why the cell is greyed. So maybe...
Andreas Müller
08:50 AM bug #9816: Implement correct handling of more than one element for a character
Tested with Structured DDS Test:
* For Descripta prima there exist two elements for "bush property", they are grey...
Katja Luther
04:28 PM bug #6106 (Closed): [Discuss] Handle rights and roles for CdmPreferences
Andreas Müller
12:23 AM bug #6106 (Resolved): [Discuss] Handle rights and roles for CdmPreferences
CDM Preferences are currently only available via the Admin menu which, I think, is only available for admin and Role_... Andreas Müller
04:15 PM bug #8343: potential timezone problem in application stack
Is this solved in the meanwhile? https://www.phycobank.org/cdm_dataportal/registration-search/filter?identifier=10016... Andreas Müller
04:06 PM bug #8291: saving text with special characters throws exception
Can you give some more input what characters cause problems? Andreas Müller
04:02 PM feature request #6162: Implement "Forgot your password?" button in the Taxeditor connect dialog
As AK is currently working on this for Vaadin I move this ticket to the next but one milestone Andreas Müller
03:59 PM feature request #6161: Service and webservice to recover forgotten passwords
I move this to next milestone as it is what you are currently work on as far as I know. Andreas Müller
03:47 PM feature request #6865: [DISCUSS] Separator for Code and Accession Number
NoK:
eine Lösung wie „B: B 10 0018600“ finde ich gut; auf keinen Fall Deduplizieren für B, das bringt nur unschöne...
Andreas Müller
03:18 PM Revision 6722a199 (taxeditor): ref #9816: tooltip and disabled field for taxon descriptions also - continue
Katja Luther
02:30 PM Revision 2f45fa53 (taxeditor): ref #9816: tooltip and disabled field for taxon descriptions also
Katja Luther
01:35 PM Revision c9fd6dd7 (taxeditor): ref #9816: adapt tooltip text
Katja Luther
01:25 PM Revision 49f4efde (taxeditor): ref #9816: add tooltip to disabled fields and change color of fields with default value
Katja Luther
11:16 AM bug #6548 (Closed): NPE in DeduplicationHelper
Tested with two open editors and deduplicated the same references. Saving the second deduplication results in a merge... Katja Luther
01:33 AM bug #6548 (Resolved): NPE in DeduplicationHelper
I guess this was fixed with commit:c3794190 . Please verify and move to v4.8 if correct. Andreas Müller
11:04 AM Revision d146cd8f (taxeditor): ref #9821: no references yet should be shown only once
Katja Luther
10:50 AM bug #6202 (Worksforme): Disable "New" button in toolbar when editor is not connected
Andreas Müller
10:49 AM bug #6202 (Closed): Disable "New" button in toolbar when editor is not connected
Katja Luther
10:49 AM bug #6202: Disable "New" button in toolbar when editor is not connected
Yes this is fixed. Katja Luther
12:59 AM bug #6202 (Resolved): Disable "New" button in toolbar when editor is not connected
I guess this is fixed in the meanwhile. Can you please verify and remove target version if true. Andreas Müller
10:47 AM bug #9814 (Closed): Advanced search webservice for area throws NPE (mexico portal)
This works as expected. Katja Luther
10:13 AM Revision b1dbf58c (cdmlib): further reduce minFreeHeap for aggregation tests
Andreas Müller
10:08 AM Revision 67603589 (cdmlib): ref #9831 reduce error handling for missing terms, languages or representations from error to warning in Adder
Andreas Müller
10:07 AM Revision 4371ee3e (cdmlib): fix stepList handling in SingleTermUpdater
Andreas Müller
10:07 AM Revision 5ab2bdcf (cdmlib): cleanup
Andreas Müller
09:49 AM bug #9831 (Resolved): Exception in TermRepresentationUpdater if term does not exist
Applied in changeset commit:cdmlib|d5693d330120d64d73392743a05f102b33ca0865. Andreas Müller
09:41 AM bug #9831 (Closed): Exception in TermRepresentationUpdater if term does not exist
observed during CoL update
~~~
Errors:
=======
Term for representations update does not exist. Term not updat...
Andreas Müller
09:48 AM Revision d5693d33 (cdmlib): fix #9831 reduce error handling for missing terms, languages or representations from error to warning in TermRepresentationUpdater
Andreas Müller
09:21 AM bug #9830: México Distrito Federal needs accent
I updated the csv file but we still need an update script. Andreas Müller
09:21 AM bug #9830: México Distrito Federal needs accent
~~~
SELECT *
FROM Representation dtb
WHERE dtb.label LIKE '%México Distrito Federal%'
SELECT *
FROM DefinedTer...
Andreas Müller
09:10 AM bug #9830 (In Progress): México Distrito Federal needs accent
copied from #7200
for details see there
Andreas Müller
09:18 AM Revision 598b79bf (cdmlib): ref #9830 add accent to México Distrito Federal in TdwgArea.csv
Andreas Müller
09:13 AM bug #7200 (Worksforme): México Distrito Federal spelling and ignore accents in area search
I split the ticket. Correct spelling for „México Distrito Federal“ is now handled in #9830 as this needs a model chan... Andreas Müller
09:11 AM bug #7200: México Distrito Federal spelling and ignore accents in area search
NK:
Ja, searching for "Mexico" also returns "México State"
Aber es heißt immer noch „Mexico Distrito Federal“ sta...
Andreas Müller
08:32 AM Revision 888a0d35 (taxeditor): avoid NPE for root node
Katja Luther
01:46 AM bug #6978 (Resolved): NPE in DefaultReferenceCacheStrategy
I guess this is fixed in the meanwhile. The above link gives a result (though taking time) and the mentioned method R... Andreas Müller
01:37 AM bug #6768 (Duplicate): NumberFormatException during BHL query
duplicates #6861 Andreas Müller
12:54 AM bug #6191 (Worksforme): Update context menu in name editor after "Change to accepted taxon"
I can't reproduce this. Probably it has been fixed in the meanwhile. Andreas Müller
12:46 AM bug #6181 (In Progress): Deleting a misapplied name does not set the dirty flag
There is a warning now saying that the operation is not revertable and additionally the dirty flag is set. Also I tes... Andreas Müller
12:35 AM bug #6121 (Feedback): NPE during portal web service requests that go through BaseController.doGetMethod()
Is this still an open issue? I tested with http://api.cybertaxonomy.org/euromed/portal/taxon/4a889e6c-9816-4745-9d06-... Andreas Müller
12:23 AM feature request #9829 (New): Secure writing methods for CdmPreferences with role Role_Project_Manager
copied from #6106
for details see there and in related tickets.
Andreas Müller

10/26/2021

11:52 PM bug #6098: Improve session handling for TaxonNavigator and newTaxonNodeWizard
Is this still an open issue? Andreas Müller
11:46 PM Revision e2bb62a5 (cdmlib): ref #6025 add comment to test dependency
Andreas Müller
11:45 PM Revision 7451ea0f (cdmlib): cleanup
Andreas Müller
11:33 PM bug #9828 (New): Preferred stable URI (and maybe other data) are not shown in specimen table if no field unit exists
If the specimen is only a derived unit with e.g. all field unit data in protected cache but with a prefered stable UR... Andreas Müller
10:53 PM bug #5863 (Resolved): Specimen tab condensed table does not show Collection for single collection
For me this ticket seems to be fixed in the meanwhile. Can you please double check and remove target version/set to w... Andreas Müller
10:37 PM bug #5517 (Worksforme): Update label for synonym types
As we do not use synonym relations anymore the relationship type is not shown anymore in the TaxEditor. However, inte... Andreas Müller
09:59 PM bug #7200 (Resolved): México Distrito Federal spelling and ignore accents in area search
This seems to be fixed in the meanwhile. At least searching for "Mexico" also returns "México State". Norbert, can yo... Andreas Müller
05:55 PM bug #7200: México Distrito Federal spelling and ignore accents in area search
How to implement java side accent insensitive compare or contains is e.g. explained here:
https://stackoverflow.co...
Andreas Müller
05:45 PM bug #7200: México Distrito Federal spelling and ignore accents in area search
Andreas Kohlbecker wrote:
> These types of problems are usually rather a question of the collation being used in the...
Andreas Müller
06:37 PM bug #9812 (Closed): Display of scientific name in the list-view of Vaadin
The bug is fixed, fine (tested in Vaadin Test), closed the ticket. Wolf-Henning Kusber
02:28 PM bug #9812: Display of scientific name in the list-view of Vaadin
@henning, please review Andreas Kohlbecker
11:54 AM bug #9812 (Resolved): Display of scientific name in the list-view of Vaadin
Applied in changeset commit:cdm-vaadin|0b1a05647fb83bfc590202a8a5d7a844d7605ba5. Andreas Kohlbecker
11:38 AM bug #9812: Display of scientific name in the list-view of Vaadin
to reproduce search for "Planothidium cryptolanceolatum" in http://api.phycobank.org/phycobank/app/registration#!list... Andreas Kohlbecker
11:21 AM bug #9812: Display of scientific name in the list-view of Vaadin
see "preparation" 2019/2020/2021, in the Test and Production system. Wolf-Henning Kusber
06:01 PM bug #8023: IndexOutOfBoundsException caused by RegistrationWorkingSet.getRegistrationDate()
Is this still an open issue? If yes please add category and adapt assignee and or target version. Andreas Müller
05:58 PM bug #7634: Timeout/Performance problems in Taxeditor
Is this still an open issue? Andreas Müller
05:40 PM bug #7049 (Worksforme): DB preferences should allow triple state to allow null values for checkboxes
This is implemented in the meanwhile. Please reopen if you think there is still something missing. Andreas Müller
05:39 PM bug #7048 (Worksforme): DB preferences allow override needs to be implemented per preference, not per preference page
I checked again and it is definetely implemented in the meanwhile (at least for DB preferences). Close as worksforme. Andreas Müller
05:36 PM bug #7048 (Feedback): DB preferences allow override needs to be implemented per preference, not per preference page
I guess this is fixed in the meanwhile. Can you please double-check? Andreas Müller
05:32 PM bug #7979: Registration date and time, display
Andreas Müller wrote:
> Can we adapt milestone or remove it?
??
Andreas Müller
05:28 PM bug #9821 (Closed): Description sources shown for description elements should not be editable
Works as expected. Andreas Müller
03:37 PM bug #9821: Description sources shown for description elements should not be editable
I guess the change of milestone was accidentally Andreas Müller
03:22 PM bug #9821 (Resolved): Description sources shown for description elements should not be editable
Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > It works for sources loaded during the s...
Katja Luther
01:43 PM bug #9821: Description sources shown for description elements should not be editable
Katja Luther wrote:
> Andreas Müller wrote:
> > It works for sources loaded during the session but not yet for sour...
Katja Luther
01:27 PM bug #9821 (In Progress): Description sources shown for description elements should not be editable
Katja Luther
10:19 AM bug #9821 (Resolved): Description sources shown for description elements should not be editable
Andreas Müller wrote:
> It works for sources loaded during the session but not yet for sources created during the se...
Katja Luther
04:49 PM Revision cdb9241f (cdmlib): javadoc
Andreas Müller
04:48 PM Revision cb291ebd (cdmlib): ref #9814 fix vocabularyDtos caching
Andreas Müller
04:36 PM bug #9814 (Resolved): Advanced search webservice for area throws NPE (mexico portal)
I think in general this ticket is fixed as the webservice and TaxEditor do use 2 different methods to initialize the ... Andreas Müller
04:33 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
Andreas Müller wrote:
> In the mentioned method you iterate over all returned dtos and for each you run a query to r...
Andreas Müller
03:52 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
In the mentioned method you iterate over all returned dtos and for each you run a query to retrieve the VocDto. This ... Andreas Müller
03:41 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
who is now in charge of this ticket? Andreas Müller
02:49 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
Andreas Kohlbecker wrote:
> 1. I think adding the VocDto to the termDTOs bloats the reponses with a lot of redundant...
Katja Luther
10:49 AM bug #9814 (Feedback): Advanced search webservice for area throws NPE (mexico portal)
1. I think adding the VocDto to the termDTOs bloats the reponses with a lot of redundant information. In most cases t... Andreas Kohlbecker
04:31 PM Revision f1f5966b (cdmlib): ref #9814 cache vocabularyDtos when loading termDTOs
Andreas Müller
04:25 PM Revision 440ea14c (cdmlib): cleanup
Andreas Müller
04:25 PM Revision 23230c1f (cdmlib): cleanup and javadoc
Andreas Müller
03:31 PM Revision 40e7c19a (cdmlib): ref #9816: avoid NPE
Katja Luther
02:40 PM bug #9816 (Resolved): Implement correct handling of more than one element for a character
The disabling of the fields for two or more elements per feature is implemented.
Actually if one of the fields is ...
Katja Luther
02:03 PM Revision 13866815 (taxeditor): ref #9814: adapt method in editor
Katja Luther
02:01 PM Revision 4af8adcf (cdmlib): ref #9814: rename findByTitleasDto method to findByTitleAsDtoWithVocDto
Katja Luther
01:43 PM Revision df3a895a (taxeditor): ref #9821: renderContent needs to overrite
Katja Luther
01:38 PM bug #9819 (Closed): Rename "Nameeditor" to "Taxon Editor" in menus
I guess we can close this ticket now. Andreas Müller
01:38 PM bug #9819: Rename "Nameeditor" to "Taxon Editor" in menus
Andreas Müller wrote:
> Once this is done we can close the ticket. However, we should think about a new ticket to ad...
Andreas Müller
10:43 AM bug #9819: Rename "Nameeditor" to "Taxon Editor" in menus
Andreas Müller wrote:
> Have you checked partdescriptor.label.2 in eu.etaxonomy.taxeditor.editor/OSGI-INF/l10n/plugi...
Katja Luther
10:25 AM bug #9819 (Feedback): Rename "Nameeditor" to "Taxon Editor" in menus
Have you checked partdescriptor.label.2 in eu.etaxonomy.taxeditor.editor/OSGI-INF/l10n/plugin_de.properties ? And co... Andreas Müller
09:41 AM bug #9819 (Resolved): Rename "Nameeditor" to "Taxon Editor" in menus
Andreas Müller wrote:
> Please check that always both translations are adapted. E.g. there is a change in eu.etaxono...
Katja Luther
01:37 PM task #9827 (New): Rename taxeditor code from name editor to taxon editor
copied from #9819
However, we should think about a new ticket to adapt also code to the new labels. E.g. command.n...
Andreas Müller
01:03 PM Revision e0211b4b (cdmlib): avoid NPE
Katja Luther
01:01 PM Revision ba131d9b (cdmlib): ref #9816: correct handling of empty quant data
Katja Luther
12:59 PM Revision 782249c5 (cdmlib): cleanup and javadoc
Andreas Müller
12:59 PM Revision 07b5ae22 (taxeditor): ref #9816: quantitative data editor needs to handle new descr element correctly
Katja Luther
12:51 PM feature request #8062 (Closed): Make default preferences deletable serverside
So we finally chose solution 3 (from the ticket description) and had to revert some of the changes made here previous... Andreas Müller
12:21 PM feature request #8062: Make default preferences deletable serverside
In later discussions (e.g. related to #8045) we decided that it makes sense to distinguish default values (not existi... Andreas Müller
12:50 PM task #9826 (New): Move pure TaxEditor predicates back to taxeditor code
In #8062 with commit 3c2c16c0 we moved taxeditor predicates to cdmlib as we needed to handle default values server si... Andreas Müller
11:54 AM Revision 0b1a0564 (cdm-vaadin): fix #9812 adding missing blank after non separater tagged text items
Andreas Kohlbecker
11:02 AM bug #4721 (Worksforme): RestServices for list methods return error when index is out of range
works now:
https://int.e-taxonomy.eu/cdmserver/integration_palmae/classification.json?start=1&limit=3
returns...
Andreas Kohlbecker
10:52 AM bug #9811 (Closed): regression through removal of `TaxonRelationshipBeanProcessor` ?
confirmed Andreas Kohlbecker
10:51 AM task #3346 (Worksforme): Team.addListenerForTeamMember(Person member) adds idle listener
The listener now obviously calls `resetCaches()`, so this is fixed. Andreas Kohlbecker
10:42 AM Revision d7f7dcb0 (taxeditor): remove unused labels
Katja Luther
10:36 AM bug #9817 (Closed): AggregationWizard: Changing the maxRank results in empty minRank
Ok, so I think we can close this ticket now. Or is there still an open issue? Andreas Müller
10:25 AM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
Andreas Müller wrote:
> The problem itself is fixed now. There is a minor issue left: if a lowest rank is chosen the...
Katja Luther
10:30 AM Revision 1f2126f1 (taxeditor): avoid widget is disposed exception
Katja Luther
10:25 AM Revision 773fe4f3 (taxeditor): cleanup
Andreas Müller
10:18 AM Revision a9cd0534 (taxeditor): ref #9821: all sources of description should be disabled
Katja Luther
09:46 AM Revision 139dad7d (taxeditor): ref #9816: adapt matrix to possibility of more than one descr element
Katja Luther
09:45 AM Revision 2b942f17 (cdmlib): ref #9816: adapt rowWrapperDto to more than one description element
Katja Luther
09:39 AM Revision 7d4a750b (taxeditor): ref #9819: still some occurences of Namens-Editor, move to taxon editor
Katja Luther
09:15 AM feature request #9511 (New): Move specimens/individual associations for matrix into same description
This is still an open issue. Tested with my local installation. Katja Luther

10/25/2021

11:36 PM feature request #9511: Move specimens/individual associations for matrix into same description
? Andreas Müller
11:35 PM bug #9817 (Feedback): AggregationWizard: Changing the maxRank results in empty minRank
Andreas Müller
11:35 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
The problem itself is fixed now. There is a minor issue left: if a lowest rank is chosen the "Highest rank" combo sti... Andreas Müller
01:42 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
Tested for Structured DDS test:
* select highest rank "Order", select lowest rank "species"
* select highest rank...
Katja Luther
11:23 PM bug #9281 (Closed): Set basionym not available for heterotypic synonyms after drag & drop
works as expected Andreas Müller
01:14 PM bug #9281: Set basionym not available for heterotypic synonyms after drag & drop
Tested on rem_conf_am:
Created new heterotypic synonym by using right click menu, creating second heterotypic syno...
Katja Luther
11:19 PM bug #9818 (Closed): Sources not visible for disabled DescriptionElements
works as expected Andreas Müller
01:33 PM bug #9818: Sources not visible for disabled DescriptionElements
Tested on rem_conf_am Descripta prima, sources can be expanded but are not editable, so it works as expected. Katja Luther
11:14 PM bug #9819 (Feedback): Rename "Nameeditor" to "Taxon Editor" in menus
Please check that always both translations are adapted. E.g. there is a change in eu.etaxonomy.taxeditor.bulkeditor/O... Andreas Müller
01:30 PM bug #9819: Rename "Nameeditor" to "Taxon Editor" in menus
Tested in taxon navigator and bulk editor and open in ... shows "taxon editor" Katja Luther
10:57 PM bug #9815 (Closed): When removing all elements of a description, the description disappears from factual data view, but still exist
works as expected Andreas Müller
01:47 PM bug #9815: When removing all elements of a description, the description disappears from factual data view, but still exist
Tested with Descripta prima:
* create a new Factual Data Set and add new distribution
* create another new factua...
Katja Luther
10:55 PM bug #9821 (Feedback): Description sources shown for description elements should not be editable
It works for sources loaded during the session but not yet for sources created during the session.
I created a new...
Andreas Müller
01:23 PM bug #9821: Description sources shown for description elements should not be editable
Tested with Descripta prima Dall. in Descriptive DS test.
Categorical as well as quantitative data worked as expec...
Katja Luther
10:36 PM bug #9806: Clones should not be editable in factual data view and elsewhere
Should we split this ticket? Andreas Müller
01:47 PM bug #9816 (In Progress): Implement correct handling of more than one element for a character
Katja Luther
10:31 AM bug #9825 (Closed): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
The selection wizard for areas for the distribution editor shows the vocabularies twice in cuba, this is a multilangu... Katja Luther
10:27 AM bug #9824 (New): [Distribution Editor] Areas in header should be sorted hierarchically
mail WB:
c) kann man den Header der Tabelle hierarchisch anordnen? Ich nahm an, das wäre die „natural“ Option in d...
Katja Luther
10:23 AM bug #9823 (New): [Distribution Editor] Unsaved changes not shown in correct column when changing areas
mail WB:
a) Ein wichtiger Bug: Wenn man die Auswahl der areas ändert, ohne vorher gespeichert zu haben, werden die...
Katja Luther
09:34 AM Revision cb993828 (cdm-dataportal): ref #9811 switching in search results to portal/taxon/{uuid}/taxonRelationshipsDTO and adapting code
Andreas Kohlbecker

10/22/2021

12:35 PM Revision e6fe76d0 (cdmlib): ref #9816: create display string for all elements of the same feature
Katja Luther
11:33 AM feature request #7675 (Feedback): Make columns with default values togglable
I do not understand the intention of this ticket, if a default value exist no exact values from the specimen should b... Katja Luther
11:17 AM bug #9815 (Resolved): When removing all elements of a description, the description disappears from factual data view, but still exist
please review. Katja Luther
11:16 AM Revision 99ba434b (taxeditor): ref #9815: when removing all elements of description, do not remove it automatically
Katja Luther
11:03 AM Revision d2b34d6b (taxeditor): avoid NPE
Katja Luther
11:02 AM Revision 7a683d4e (taxeditor): ref #9819: one file was missing
Katja Luther
10:56 AM Revision 91d72a14 (taxeditor): ref #9816: disable field for more than one description element
Katja Luther

10/21/2021

09:30 AM bug #9814 (Resolved): Advanced search webservice for area throws NPE (mexico portal)
Added the vocDto to termDto when creating the termDto because the voc representations are needed for the term search.... Katja Luther
09:29 AM Revision dfd8da23 (cdmlib): ref #9814: add vocDto to termDto
Katja Luther

10/20/2021

04:46 PM bug #9819 (Resolved): Rename "Nameeditor" to "Taxon Editor" in menus
Searched for all "Namenseditor" and "name editor" strings and replaced it by "taxon editor"/"Taxon Editor" Katja Luther
04:44 PM Revision 25302047 (taxeditor): ref #9819: rename name editor to taxon editor in menues
Katja Luther
04:40 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
This should be fixed, please review. Katja Luther
04:30 PM bug #9817 (Resolved): AggregationWizard: Changing the maxRank results in empty minRank
Applied in changeset commit:taxeditor|9f84c59541baaae91592b1870fd11d5c802d68a8. Katja Luther
04:29 PM Revision 9f84c595 (taxeditor): fix #9817: remember selected rank when update rank combo
Katja Luther
03:28 PM bug #9821 (Resolved): Description sources shown for description elements should not be editable
This should be fixed. Please review. Katja Luther
12:49 PM bug #9821 (Closed): Description sources shown for description elements should not be editable
Since #7774 sources for descriptions are shown in the details view for description elements.
However, they should no...
Andreas Müller
03:09 PM Revision 4351685c (taxeditor): ref #9821: sources of description should not be editable
Katja Luther
01:18 PM feature request #9771: Implement Cdm2Cdm for vocabularies
Note: in TaxEditor there is a first version for handling a second CdmServer at CdmServerInfo.getDevServerRemoteSource() Andreas Müller
01:11 PM task #9822 (New): Improve performance for DDS aggregation
e.g. by faster loading of data and by not reloading the full dataset after aggregation (there might be a ticket for t... Andreas Müller
11:32 AM bug #9811 (Resolved): regression through removal of `TaxonRelationshipBeanProcessor` ?
solved, see http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/search/results/taxon?ws=portal%2Ftaxo... Andreas Kohlbecker
11:22 AM Revision cb2b26b5 (cdm-dataportal): ref #9811 switching in search results to portal/taxon/{uuid}/taxonRelationshipsDTO and adapting code
Andreas Kohlbecker
11:21 AM Revision 3d73cbc2 (cdmlib): ref #9811 adding classification uuids to TaxonRelationshipsDTO
Andreas Kohlbecker
11:21 AM Revision fd07b3aa (cdmlib): avoiding NPEs in loadTreeBranch methods
Andreas Kohlbecker

10/19/2021

03:23 PM bug #9818 (Resolved): Sources not visible for disabled DescriptionElements
This should be fixed. Katja Luther
03:21 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
I checked advance search on test servers and it works again: http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm... Andreas Müller
03:19 PM bug #9806 (In Progress): Clones should not be editable in factual data view and elsewhere
Now cloned descriptions are disabled like computed descriptions. Katja Luther
03:18 PM Revision b9b4a1ec (taxeditor): ref #9806: disable cloned descriptions
Katja Luther
02:58 PM Revision 22466e2e (taxeditor): ref #9818: avoid NPE
Katja Luther
02:49 PM bug #9281 (Resolved): Set basionym not available for heterotypic synonyms after drag & drop
This should be fixed, please review. Katja Luther
02:47 PM Revision eba0b772 (taxeditor): ref #9281: setBasionym should be available after d&d - continue
Katja Luther
02:34 PM Revision 342be9a6 (taxeditor): ref #9281: setBasionym should be available after d&d
Katja Luther
02:04 PM Revision 5af7ab6e (taxeditor): ref #9818: keep collapsable elements expandable when details are disabled
Katja Luther
11:18 AM bug #9820 (New): OptionalDataException when saving character matrix
After moving all used elements to Dtos the character matrix still needs a lot of time to start and sometimes an optio... Katja Luther
10:39 AM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
Katja Luther wrote:
> Actually maybe this was the wrong ticket because the exception coming up again was not an OutO...
Andreas Müller

10/18/2021

06:39 PM Revision 22c38d41 (taxeditor): cleanup (cont.)
Andreas Müller
06:21 PM Revision 611fddf9 (taxeditor): cleanup
Andreas Müller
05:09 PM bug #8936: Improve default distribution formatting
there was a problem with the release in the master branch, some commits have been lost. this is fixed and it is now t... Andreas Kohlbecker
04:37 PM Revision 73bd997a (cdm-dataportal): Merge tag '5.27.1' into develop
tagging hotfix Andreas Kohlbecker
04:37 PM Revision e3b0407b (cdm-dataportal): Merge branch 'hotfix/5.27.1'
Andreas Kohlbecker
04:37 PM Revision ec495134 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
04:18 PM Revision 32ae53fa (cdmlib): cleanup
Andreas Müller
03:59 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
this method is only used in the TaxEditor:
~~~
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor...
Andreas Kohlbecker
02:09 PM bug #9814 (Feedback): Advanced search webservice for area throws NPE (mexico portal)
I fixed the NPE so it does not throw an exception anymore. However, we need to discuss how the TermDTO should behave.... Andreas Müller
12:02 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
This is strange, the actual method getVocRepresentation_L10n_abbreviatedLabel() is never called in cdmlib so I don't ... Andreas Müller
11:58 AM bug #9814 (Closed): Advanced search webservice for area throws NPE (mexico portal)
... Die Area-Terme in der Suche fehlen gerade komplett, das der Webservice nichts zurückliefert: https://132.248.13.8... Andreas Müller
03:07 PM bug #9819 (Closed): Rename "Nameeditor" to "Taxon Editor" in menus
follow up for #9744
Currently the "open in" context menu still uses Nameeditor.
Please also check for other occ...
Andreas Müller
02:23 PM bug #9818 (Closed): Sources not visible for disabled DescriptionElements
The sources of disabled description elements are not expandable but should. Katja Luther
02:09 PM Revision a4eb66ae (cdmlib): ref #9798 add also Spanish translation for country (label of vocabulary)
Andreas Müller
02:06 PM Revision 19252634 (cdmlib): cleanup
Andreas Müller
02:06 PM Revision d4542f66 (cdmlib): ref #9814 fix NPE in TermDto.getVocRepresentation_L10n (+..._abbreviatedLabel)
Andreas Müller
02:02 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
Actually maybe this was the wrong ticket because the exception coming up again was not an OutOfMemoryException but an... Katja Luther
01:51 PM bug #8783 (Feedback): Massive Heap consumption in server instance opening the Description-Matrix editor
Was comment 16 ("changed from Closed to In Progress") a mistake, it completely misses any explanation?
I am assumin...
Andreas Kohlbecker
12:54 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
If we reopen then we should adapt the milestone. But maybe it is better to keep this closed and create a new ticket a... Andreas Müller
12:44 PM bug #8783 (In Progress): Massive Heap consumption in server instance opening the Description-Matrix editor
Katja Luther
01:37 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
This is a regression therefore setting to 5.28 Andreas Müller
01:12 PM bug #9817 (Closed): AggregationWizard: Changing the maxRank results in empty minRank
mail AM:
wenn ich den max-Rank beim DDS Aggregationsdialog ändere wird immer der min-Rang auch gelöscht. Auch in F...
Katja Luther
01:10 PM bug #9816 (Closed): Implement correct handling of more than one element for a character
Implement correct handling in the character matrix, if two or more elements exist for one character. If one of the el... Katja Luther
12:35 PM bug #9815 (Closed): When removing all elements of a description, the description disappears from factual data view, but still exist
mail AM:
wenn ich mehrere Descriptions in eine merge im Facts View und somit eine volle und eine komplett leere üb...
Katja Luther
11:18 AM bug #398 (Worksforme): DIPTERA: Typestatus entered as Notes for NameTypes
Ich glaube dieses Ticket können wir schließen.
Keinerlei Hinweise darauf, was gemacht wurde, daher WORKSFORME
Andreas Kohlbecker
10:38 AM bug #9813 (New): Details view should be available for literature (and default) descriptions in character matrix
this is a subticket #9799 but with highest priority as adding sources to literature descriptions is essential functi... Andreas Müller

10/15/2021

07:27 PM feature request #6387 (Closed): [Rule] Rank rule for CultivarPlantNames
Added a level 2 rule that checks if cultivar (ICNCP) names have a cultivar rank.
Of course there could be much mor...
Andreas Müller
07:25 PM Revision 64254a55 (cdmlib): ref 6387 add some first rules for rank<->code test (cont.)
Andreas Müller
07:10 PM Revision a01d2bd1 (cdmlib): ref 6387 add some first rules for rank<->code test
Andreas Müller
07:06 PM Revision 7828c44e (cdmlib): cleanup
Andreas Müller
05:55 PM bug #9785 (In Progress): Update script for missing unit_ids (matrix)
The above update should run with error recovery to avoid a break in update if the SQL fails (especially for non-MySQL) Andreas Müller
05:53 PM bug #9785: Update script for missing unit_ids (matrix)
Some search SQL:
~~~sql
SELECT deb.id, fe.id, fe.titleCache -- , COUNT(*) AS n
FROM DescriptionElementBase deb...
Andreas Müller
05:52 PM bug #9785: Update script for missing unit_ids (matrix)
An Update for MySQL:
~~~
UPDATE DescriptionElementBase deb LEFT OUTER JOIN DefinedTermBase fe ON fe.id = deb.feat...
Andreas Müller
04:14 PM bug #9477 (Closed): New ordered terms do not have correct order index
Andreas Müller
04:10 PM feature request #8979 (Closed): Prevent misuse of field initial for personal names
Andreas Müller
12:05 PM feature request #8979: Prevent misuse of field initial for personal names
In Vaadin perfectly implemented there 100%, but did not check the TaxEditor if it is there relevant. Wolf-Henning Kusber
04:09 PM task #9308 (Closed): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Andreas Müller
11:33 AM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Task is perfectly implemented, ticket can be closed. Wolf-Henning Kusber
04:06 PM bug #8936: Improve default distribution formatting
It looks item suffix is currently not yet handled correctly in Drupal Code.
Example from mexico flora: https://13...
Andreas Müller
12:17 PM bug #9812 (Closed): Display of scientific name in the list-view of Vaadin
As of 15 Oct 2021 scientific names (Vaadin release system) are displayed mainly without blanks between genus, species... Wolf-Henning Kusber
11:59 AM feature request #7640 (Closed): Update ISO country names where necessary
Andreas Müller
11:49 AM feature request #7640: Update ISO country names where necessary
I am happy with the implementation, short names and it is clear which country is meant. Tested it in Vaadin, release ... Wolf-Henning Kusber

10/13/2021

03:22 PM bug #9797 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
new ticket for the open issue #9811 Andreas Kohlbecker
03:22 PM bug #9811 (Closed): regression through removal of `TaxonRelationshipBeanProcessor` ?
It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture502-1.pn...
Andreas Kohlbecker

10/12/2021

05:45 PM task #9123 (Closed): Fix BigDecimal algebra in aggregation algorithms
Moved polytomous key handling to new ticket #9810 Andreas Müller
05:35 PM task #9810 (New): Test if BigDecimal algebra is correct in PolytomousKey algorithms
copied from #9123 and #8978
Aggregation is checked and fixed in the meanwhile (#9123)
Andreas Müller
05:31 PM feature request #9798 (Closed): Import Spanish representations for countries
Andreas Müller
04:02 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture143-1.pn...
Andreas Kohlbecker
02:25 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
There are still problems with loading MAN, e.g. https://europlusmed.org/cdm_dataportal/search/results/taxon?ws=portal... Andreas Müller
02:52 PM Revision 29d0b0f6 (cdmlib-apps): some upgrade for BgbmInstancesUpdater
Andreas Müller
02:37 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
Andreas Kohlbecker
02:30 PM bug #9808 (Resolved): option to disable ssl/tsl certificate validation of the cdm webserver
Applied in changeset commit:cdm-dataportal|91313ab4c0d34ddd9d9c745e268b16c4eefe234b. Andreas Kohlbecker
02:29 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
in situations when a self signed certificate is being used with the cdmserver it is needed to disable certificate val... Andreas Kohlbecker
02:37 PM feature request #9786 (Closed): Implement tags CY and fix PY handling for RIS import
This should work as tests exist. If there are open issues we should add them to #9809 Andreas Müller
02:35 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
Generally this works. However, there are a couple of open issues handled in #9809. Andreas Müller
02:34 PM feature request #9809: Implement further tags for RIS reference import
NaK:
Nur bei Book Chapters funktioniert der Import nur teilweise, dafür muss man ja das Buch separat anlegen und d...
Andreas Müller
02:31 PM feature request #9809 (New): Implement further tags for RIS reference import
in #6636 and #9786 the most important tags for RIS import have been implemented. However, there are a couple of more ... Andreas Müller
02:31 PM Revision 17ed1083 (cdm-dataportal): Merge tag '5.27.1' into develop
tagging hfx release Andreas Kohlbecker
02:31 PM Revision 827c80d5 (cdm-dataportal): Merge branch 'hotfix/5.27.1'
Andreas Kohlbecker
02:31 PM Revision 2415b2e3 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
02:30 PM Revision 91313ab4 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
10:27 AM Revision 6b34400c (cdmlib): minor and cleanup
Andreas Müller
 

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