Activity
From 10/04/2021 to 11/02/2021
11/02/2021
- 11:00 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- Andreas Kohlbecker wrote:
> please review
... and change the ticket subject to "Cannot create a nomenclatural s... - 04:28 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- please review
- 04:02 PM bug #9834 (Resolved): Cannot create a nomenclatural standard abbreviation in the Reference author team
- Applied in changeset commit:cdm-vaadin|ea112e7e945ad66460e4cdf9570f00597ed220c5.
- 02:39 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- see ![](picture338-1.png)
- 02:37 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- > Cannot create a nomenclatural standard abbreviation in the Reference author team.
Also das ist das Problem? Auto... - 02:14 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- Henning:
Um ein konkretes Beispiel zu haben in 100970 (paper Takano et al. 2014) gibt es einen bibliographischen ... - 12:13 PM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- Same problem in the Test system
I added in the test system a "test" name with the respective author, who cannot be... - 10:50 AM bug #9834: Cannot create a nomenclatural standard abbreviation in the Reference author team
- > Cannot create a nomenclatural standard abbreviation in the Reference author team.
Also das ist das Problem? Auto... - 06:33 PM bug #9825: Selection wizards for areas in mulitlanguage instances show every vocabulary twice
- The method used is a DTO method VocabularyService.findVocabularyDtoByTermType() or finally on DTO level TermVocabular...
- 12:09 PM bug #9825 (In Progress): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
- First implementation with commit:d955087e . However, it may not yet work due to generics (the current DefinedTermDaoI...
- 05:18 PM task #9837 (In Progress): updadte vaadin to latets 7.* version
- 05:17 PM bug #9831 (Closed): Exception in TermRepresentationUpdater if term does not exist
- definitely fixed, can be closed
- 02:54 PM bug #4821: Changing order of terms not possible
- please review
- 01:14 PM feature request #9836: Make nameUsedInSource available for secundum references
- Andreas Müller wrote:
> @Katja, can you remove the nameUsedInSource for synonyms then?
this is already implemente... - 01:12 PM feature request #9836: Make nameUsedInSource available for secundum references
- @Katja, can you remove the nameUsedInSource for synonyms then?
- 11:41 AM feature request #9836: Make nameUsedInSource available for secundum references
- mail NaK:
nach meiner Erfahrung bisher ist das name in source vor allem wichtig wenn das Taxon in der sec. Refer... - 09:34 AM feature request #9836: Make nameUsedInSource available for secundum references
- AM:
... ich wollte allerdings gerne nochmal klären, ob wir bei der Semantik des Feldes übereinstimmen.
Aus meiner S... - 11:39 AM bug #9838: Loading of details of categorical and quantitative data takes very long
- Tested all collection elements in nightly and could not find any problems. Please have another look and review.
- 10:22 AM bug #9838 (Resolved): Loading of details of categorical and quantitative data takes very long
- Katja Luther wrote:
> The long time loading was produced by a mistake in term manager.
>
> The extreme number of ... - 09:06 AM bug #9838: Loading of details of categorical and quantitative data takes very long
- This is at least partly handled in 5.28 as far as I can see. If needed can we split ticket?
How far is it solved? - 11:39 AM task #9842 (In Progress): Improve performance for loading DDS (RowWrapperDTO)
- Since #9772 we mostly use DTOs for the "RowWrapper" retrieval. However, the loading of the DTOs still uses model obje...
- 11:27 AM bug #9813: Details view should be available for literature (and default) descriptions in character matrix
- This should have high priority
- 11:24 AM bug #9807: Matrix should not collapse after aggregation
- Andreas Müller wrote:
> The current solution solves that the matrix is completely collapsed which is helpful. Howeve... - 11:20 AM bug #8243 (In Progress): Cdm Cache uses a lot of disk space
- 11:19 AM bug #8243: Cdm Cache uses a lot of disk space
- Katja Luther wrote:
> We should have a look on this with the new implementation because the matrix worked with descr... - 11:10 AM feature request #9841 (New): Possibility to open only a taxonomic subtree of a matrix
- E.g. by having a context menu for the subtree filter in the descriptive dataset editor and/or having an "open in" (wi...
- 11:06 AM bug #9806: Clones should not be editable in factual data view and elsewhere
- This has been partly implemented in 5.28 I think. We should either split the ticket or implement the second part (con...
- 11:03 AM feature request #7675 (Rejected): Make columns with default values togglable
- Katja Luther wrote:
> I do not understand the intention of this ticket, if a default value exist no exact values fro... - 08:53 AM bug #9816: Implement correct handling of more than one element for a character
- Katja Luther wrote:
>The count is integrated in the description elements and is filled during aggregation, it is not... - 08:28 AM bug #9816: Implement correct handling of more than one element for a character
- Andreas Müller wrote:
> Then the ticket is not correctly implemented as there is yellow 2x in existing as described ...
11/01/2021
- 09:32 PM bug #9831: Exception in TermRepresentationUpdater if term does not exist
- ahh, good you found this. It is actually not a problem of the update script but of the term loader which was introduc...
- 09:31 PM bug #9831 (Resolved): Exception in TermRepresentationUpdater if term does not exist
- Applied in changeset commit:cdmlib|43ca311a71a11f78f62f495ee73815fc69f5e0a6.
- 01:01 PM bug #9831 (Feedback): Exception in TermRepresentationUpdater if term does not exist
- I tested updating of the attached (attachment:cdm_production_caryophyllales_2018-11-16.sql.bz2) database on ws1 and i...
- 11:53 AM bug #9831: Exception in TermRepresentationUpdater if term does not exist
- Andreas, can you test this with an old database on WS1.
- 06:08 PM bug #9834 (Feedback): Cannot create a nomenclatural standard abbreviation in the Reference author team
- I cant reproduce the reported problem.
* Did you test this with the test system?
* If yes, could you give some mo... - 05:12 PM bug #6978 (Worksforme): NPE in DefaultReferenceCacheStrategy
- yes, this is fixed, ticket can be closed
- 03:56 PM bug #9816: Implement correct handling of more than one element for a character
- Then the ticket is not correctly implemented as there is yellow 2x in existing as described above. I also cannot beli...
- 03:45 PM bug #9816: Implement correct handling of more than one element for a character
- Andreas Müller wrote:
> I found an open issue: The literature description of Descripta prima in the test dataset for... - 03:19 PM bug #9816 (Feedback): Implement correct handling of more than one element for a character
- I found an open issue: The literature description of Descripta prima in the test dataset for bush color has 1 record ...
- 03:38 PM task #9833 (Closed): Remove cascading from descriptive dataset
- I intensively tested saving DDS with new ranks, feature trees, subtrees and descriptions and everything seems to work...
- 03:30 PM bug #9803 (Closed): Aggregating full dataset does not work
- Works as expected
- 03:23 PM bug #9807 (Feedback): Matrix should not collapse after aggregation
- The current solution solves that the matrix is completely collapsed which is helpful. However the aim is to keep it e...
- 03:14 PM task #9837 (Resolved): updadte vaadin to latets 7.* version
- 03:12 PM task #9837: updadte vaadin to latets 7.* version
- instead of updating vaadin itself it should be sufficient to upgrade the vulnerable jsoup dependency
- 02:59 PM task #9837: updadte vaadin to latets 7.* version
- updating any component to the latest vaadin 7 release requires the pro license:
Vaadin 7.7.17 was the last public ... - 12:46 PM task #9837 (In Progress): updadte vaadin to latets 7.* version
- due to https://vaadin.com/security/2021-10-27 we needed to update vaadin.server quickly.
Updating of vaadin-client... - 01:42 PM feature request #9840 (Duplicate): Add the possibility to enter new server
- We need a possibility to enter new servers into the json file, therefore it should be possible to add a new server fr...
- 01:09 PM bug #9838: Loading of details of categorical and quantitative data takes very long
- The long time loading was produced by a mistake in term manager.
The extreme number of loaded objects is caused by... - 01:06 PM bug #9838 (Closed): Loading of details of categorical and quantitative data takes very long
- The loading of the details view of categorical data or quantitative data takes really long and the loaded objects in ...
- 01:08 PM feature request #9839 (New): Show distanceToGround on the occurrence page
- Currently, only "alt." is displayed.
PhycoBank enables the following parameter:
Distance to water surface (= wa... - 09:28 AM feature request #9836: Make nameUsedInSource available for secundum references
- Andreas Müller wrote:
> We should also think about improved structuring for the preference page of the name/taxon de... - 09:18 AM feature request #9836 (In Progress): Make nameUsedInSource available for secundum references
- As a first step the name in Source field was added. We have to decide whether we want to have the own section in this...
10/29/2021
- 11:55 PM feature request #9836: Make nameUsedInSource available for secundum references
- We should also think about improved structuring for the preference page of the name/taxon details view preferences. C...
- 11:53 PM feature request #9836: Make nameUsedInSource available for secundum references
- Maybe the secundum source should get an own section similar to nomenclatural source so it becomes clearer what belong...
- 11:50 PM feature request #9836 (Closed): Make nameUsedInSource available for secundum references
- For some reason probably during #9549 the nameUsedInSource field for secundum references is not visible in the TaxEdi...
- 01:25 PM feature request #6050 (Closed): provide the possibility to choose the fields of the simple details view for names
- created a new ticket with remaining issues and close this ticket.
- 01:10 PM feature request #6050 (In Progress): provide the possibility to choose the fields of the simple details view for names
- Andreas Müller wrote:
> There are some functional issues:
>
> * ~~"Show appended phrase" can not be switched on~... - 01:24 PM bug #9835 (New): Remaining issues for NameDetailsView Configuration
- copied from #6050:
Additionally there are layout and labeling issues
* No German translation
* (maybe function... - 11:57 AM feature request #5972 (Closed): Prevent user from unwanted author and reference updates
- Andreas Müller wrote:
> It looks like it wokrs only for references until now. But we need it for all objects (if thi... - 11:50 AM feature request #5671 (In Progress): Name selection should not allow self referencing name relationships
- this is still an open issue
- 11:43 AM feature request #5365 (Closed): Add delete configurator to Media View image gallery
- The NPE is fixed in the meanwhile, so i close the ticket.
- 11:34 AM bug #4945 (In Progress): Right click menu for polytomous key node list view needs correct enabling
- Andreas Müller wrote:
> is this still an open issue?
Yes, the menu shows delete and refresh even though there is ... - 11:26 AM bug #4821: Changing order of terms not possible
- Andreas Müller wrote:
> For ordered terms it seems to work now (though there are other issues but they will be handl... - 11:26 AM bug #4821 (Resolved): Changing order of terms not possible
- Applied in changeset commit:taxeditor|8cebdfe48f07309665d5d9cdc8d39e05feec7478.
- 11:00 AM bug #9807: Matrix should not collapse after aggregation
- please review
- 10:02 AM bug #9807 (Resolved): Matrix should not collapse after aggregation
- this is fixed.
- 10:23 AM bug #9834 (Closed): Cannot create a nomenclatural standard abbreviation in the Reference author team
- Bug applies to Release/Test:
Unale to create nomenclatural authors, once a new reference or a in-reference is crea... - 09:50 AM bug #9803: Aggregating full dataset does not work
- tested on rem_conf_am. works with Structured dds test.
- 09:22 AM bug #9803 (Resolved): Aggregating full dataset does not work
- this is fixed.
10/28/2021
- 12:04 PM task #9833 (Resolved): Remove cascading from descriptive dataset
- Applied in changeset commit:cdmlib|f51cbc4e73cba3be1ebdd46613626b742698763e.
- 10:33 AM task #9833 (Closed): Remove cascading from descriptive dataset
- Cascading for descriptive system (feature tree), subtree filter (taxon nodes) and geo filter (named areas) is not nec...
10/27/2021
- 06:49 PM feature request #9832 (New): Make StatisticalMeasurementValues and StateData available in SupplementalData view
- Currently it is not possible to select those in details view for factual data. Only the categorical/quantitative data...
- 06:01 PM bug #7634: Timeout/Performance problems in Taxeditor
- WGB:
weiß ich nicht – habe schon länger nicht mehr von zu Hause aus mit dem TE gearbeitet. - 04:46 PM bug #9816: Implement correct handling of more than one element for a character
- Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > This works as expected. Only a few minor... - 01:44 PM bug #9816 (Resolved): Implement correct handling of more than one element for a character
- Katja Luther wrote:
> Andreas Müller wrote:
> > This works as expected. Only a few minor thinks:
> >
> > * for ... - 01:37 PM bug #9816: Implement correct handling of more than one element for a character
- Andreas Müller wrote:
> This works as expected. Only a few minor thinks:
>
> * for users it might be unclear why... - 11:43 AM bug #9816 (Feedback): Implement correct handling of more than one element for a character
- This works as expected. Only a few minor thinks:
* for users it might be unclear why the cell is greyed. So maybe... - 08:50 AM bug #9816: Implement correct handling of more than one element for a character
- Tested with Structured DDS Test:
* For Descripta prima there exist two elements for "bush property", they are grey... - 04:28 PM bug #6106 (Closed): [Discuss] Handle rights and roles for CdmPreferences
- 12:23 AM bug #6106 (Resolved): [Discuss] Handle rights and roles for CdmPreferences
- CDM Preferences are currently only available via the Admin menu which, I think, is only available for admin and Role_...
- 04:15 PM bug #8343: potential timezone problem in application stack
- Is this solved in the meanwhile? https://www.phycobank.org/cdm_dataportal/registration-search/filter?identifier=10016...
- 04:06 PM bug #8291: saving text with special characters throws exception
- Can you give some more input what characters cause problems?
- 04:02 PM feature request #6162: Implement "Forgot your password?" button in the Taxeditor connect dialog
- As AK is currently working on this for Vaadin I move this ticket to the next but one milestone
- 03:59 PM feature request #6161: Service and webservice to recover forgotten passwords
- I move this to next milestone as it is what you are currently work on as far as I know.
- 03:47 PM feature request #6865: [DISCUSS] Separator for Code and Accession Number
- NoK:
eine Lösung wie „B: B 10 0018600“ finde ich gut; auf keinen Fall Deduplizieren für B, das bringt nur unschöne... - 11:16 AM bug #6548 (Closed): NPE in DeduplicationHelper
- Tested with two open editors and deduplicated the same references. Saving the second deduplication results in a merge...
- 01:33 AM bug #6548 (Resolved): NPE in DeduplicationHelper
- I guess this was fixed with commit:c3794190 . Please verify and move to v4.8 if correct.
- 10:50 AM bug #6202 (Worksforme): Disable "New" button in toolbar when editor is not connected
- 10:49 AM bug #6202 (Closed): Disable "New" button in toolbar when editor is not connected
- 10:49 AM bug #6202: Disable "New" button in toolbar when editor is not connected
- Yes this is fixed.
- 12:59 AM bug #6202 (Resolved): Disable "New" button in toolbar when editor is not connected
- I guess this is fixed in the meanwhile. Can you please verify and remove target version if true.
- 10:47 AM bug #9814 (Closed): Advanced search webservice for area throws NPE (mexico portal)
- This works as expected.
- 09:49 AM bug #9831 (Resolved): Exception in TermRepresentationUpdater if term does not exist
- Applied in changeset commit:cdmlib|d5693d330120d64d73392743a05f102b33ca0865.
- 09:41 AM bug #9831 (Closed): Exception in TermRepresentationUpdater if term does not exist
- observed during CoL update
~~~
Errors:
=======
Term for representations update does not exist. Term not updat... - 09:21 AM bug #9830: México Distrito Federal needs accent
- I updated the csv file but we still need an update script.
- 09:21 AM bug #9830: México Distrito Federal needs accent
- ~~~
SELECT *
FROM Representation dtb
WHERE dtb.label LIKE '%México Distrito Federal%'
;
SELECT *
FROM DefinedTermBase... - 09:10 AM bug #9830 (Closed): México Distrito Federal needs accent
- copied from #7200
for details see there - 09:13 AM bug #7200 (Worksforme): México Distrito Federal spelling and ignore accents in area search
- I split the ticket. Correct spelling for „México Distrito Federal“ is now handled in #9830 as this needs a model chan...
- 09:11 AM bug #7200: México Distrito Federal spelling and ignore accents in area search
- NK:
Ja, searching for "Mexico" also returns "México State"
Aber es heißt immer noch „Mexico Distrito Federal“ sta... - 01:46 AM bug #6978 (Resolved): NPE in DefaultReferenceCacheStrategy
- I guess this is fixed in the meanwhile. The above link gives a result (though taking time) and the mentioned method R...
- 01:37 AM bug #6768 (Duplicate): NumberFormatException during BHL query
- duplicates #6861
- 12:54 AM bug #6191 (Worksforme): Update context menu in name editor after "Change to accepted taxon"
- I can't reproduce this. Probably it has been fixed in the meanwhile.
- 12:46 AM bug #6181 (In Progress): Deleting a misapplied name does not set the dirty flag
- There is a warning now saying that the operation is not revertable and additionally the dirty flag is set. Also I tes...
- 12:35 AM bug #6121 (Feedback): NPE during portal web service requests that go through BaseController.doGetMethod()
- Is this still an open issue? I tested with http://api.cybertaxonomy.org/euromed/portal/taxon/4a889e6c-9816-4745-9d06-...
- 12:23 AM feature request #9829 (New): Secure writing methods for CdmPreferences with role Role_Project_Manager
- copied from #6106
for details see there and in related tickets.
10/26/2021
- 11:52 PM bug #6098: Improve session handling for TaxonNavigator and newTaxonNodeWizard
- Is this still an open issue?
- 11:33 PM bug #9828 (New): Preferred stable URI (and maybe other data) are not shown in specimen table if no field unit exists
- If the specimen is only a derived unit with e.g. all field unit data in protected cache but with a prefered stable UR...
- 10:53 PM bug #5863 (Resolved): Specimen tab condensed table does not show Collection for single collection
- For me this ticket seems to be fixed in the meanwhile. Can you please double check and remove target version/set to w...
- 10:37 PM bug #5517 (Worksforme): Update label for synonym types
- As we do not use synonym relations anymore the relationship type is not shown anymore in the TaxEditor. However, inte...
- 09:59 PM bug #7200 (Resolved): México Distrito Federal spelling and ignore accents in area search
- This seems to be fixed in the meanwhile. At least searching for "Mexico" also returns "México State". Norbert, can yo...
- 05:55 PM bug #7200: México Distrito Federal spelling and ignore accents in area search
- How to implement java side accent insensitive compare or contains is e.g. explained here:
https://stackoverflow.co... - 05:45 PM bug #7200: México Distrito Federal spelling and ignore accents in area search
- Andreas Kohlbecker wrote:
> These types of problems are usually rather a question of the collation being used in the... - 06:37 PM bug #9812 (Closed): Display of scientific name in the list-view of Vaadin
- The bug is fixed, fine (tested in Vaadin Test), closed the ticket.
- 02:28 PM bug #9812: Display of scientific name in the list-view of Vaadin
- @henning, please review
- 11:54 AM bug #9812 (Resolved): Display of scientific name in the list-view of Vaadin
- Applied in changeset commit:cdm-vaadin|0b1a05647fb83bfc590202a8a5d7a844d7605ba5.
- 11:38 AM bug #9812: Display of scientific name in the list-view of Vaadin
- to reproduce search for "Planothidium cryptolanceolatum" in http://api.phycobank.org/phycobank/app/registration#!list...
- 11:21 AM bug #9812: Display of scientific name in the list-view of Vaadin
- see "preparation" 2019/2020/2021, in the Test and Production system.
- 06:01 PM bug #8023: IndexOutOfBoundsException caused by RegistrationWorkingSet.getRegistrationDate()
- Is this still an open issue? If yes please add category and adapt assignee and or target version.
- 05:58 PM bug #7634: Timeout/Performance problems in Taxeditor
- Is this still an open issue?
- 05:40 PM bug #7049 (Worksforme): DB preferences should allow triple state to allow null values for checkboxes
- This is implemented in the meanwhile. Please reopen if you think there is still something missing.
- 05:39 PM bug #7048 (Worksforme): DB preferences allow override needs to be implemented per preference, not per preference page
- I checked again and it is definetely implemented in the meanwhile (at least for DB preferences). Close as worksforme.
- 05:36 PM bug #7048 (Feedback): DB preferences allow override needs to be implemented per preference, not per preference page
- I guess this is fixed in the meanwhile. Can you please double-check?
- 05:32 PM bug #7979: Registration date and time, display
- Andreas Müller wrote:
> Can we adapt milestone or remove it?
??
- 05:28 PM bug #9821 (Closed): Description sources shown for description elements should not be editable
- Works as expected.
- 03:37 PM bug #9821: Description sources shown for description elements should not be editable
- I guess the change of milestone was accidentally
- 03:22 PM bug #9821 (Resolved): Description sources shown for description elements should not be editable
- Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > It works for sources loaded during the s... - 01:43 PM bug #9821: Description sources shown for description elements should not be editable
- Katja Luther wrote:
> Andreas Müller wrote:
> > It works for sources loaded during the session but not yet for sour... - 01:27 PM bug #9821 (In Progress): Description sources shown for description elements should not be editable
- 10:19 AM bug #9821 (Resolved): Description sources shown for description elements should not be editable
- Andreas Müller wrote:
> It works for sources loaded during the session but not yet for sources created during the se... - 04:36 PM bug #9814 (Resolved): Advanced search webservice for area throws NPE (mexico portal)
- I think in general this ticket is fixed as the webservice and TaxEditor do use 2 different methods to initialize the ...
- 04:33 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
- Andreas Müller wrote:
> In the mentioned method you iterate over all returned dtos and for each you run a query to r... - 03:52 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
- In the mentioned method you iterate over all returned dtos and for each you run a query to retrieve the VocDto. This ...
- 03:41 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
- who is now in charge of this ticket?
- 02:49 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
- Andreas Kohlbecker wrote:
> 1. I think adding the VocDto to the termDTOs bloats the reponses with a lot of redundant... - 10:49 AM bug #9814 (Feedback): Advanced search webservice for area throws NPE (mexico portal)
- 1. I think adding the VocDto to the termDTOs bloats the reponses with a lot of redundant information. In most cases t...
- 02:40 PM bug #9816 (Resolved): Implement correct handling of more than one element for a character
- The disabling of the fields for two or more elements per feature is implemented.
Actually if one of the fields is ... - 01:38 PM bug #9819 (Closed): Rename "Nameeditor" to "Taxon Editor" in menus
- I guess we can close this ticket now.
- 01:38 PM bug #9819: Rename "Nameeditor" to "Taxon Editor" in menus
- Andreas Müller wrote:
> Once this is done we can close the ticket. However, we should think about a new ticket to ad... - 10:43 AM bug #9819: Rename "Nameeditor" to "Taxon Editor" in menus
- Andreas Müller wrote:
> Have you checked partdescriptor.label.2 in eu.etaxonomy.taxeditor.editor/OSGI-INF/l10n/plugi... - 10:25 AM bug #9819 (Feedback): Rename "Nameeditor" to "Taxon Editor" in menus
- Have you checked partdescriptor.label.2 in eu.etaxonomy.taxeditor.editor/OSGI-INF/l10n/plugin_de.properties ? And co...
- 09:41 AM bug #9819 (Resolved): Rename "Nameeditor" to "Taxon Editor" in menus
- Andreas Müller wrote:
> Please check that always both translations are adapted. E.g. there is a change in eu.etaxono... - 01:37 PM task #9827 (New): Rename taxeditor code from name editor to taxon editor
- copied from #9819
However, we should think about a new ticket to adapt also code to the new labels. E.g. command.n... - 12:51 PM feature request #8062 (Closed): Make default preferences deletable serverside
- So we finally chose solution 3 (from the ticket description) and had to revert some of the changes made here previous...
- 12:21 PM feature request #8062: Make default preferences deletable serverside
- In later discussions (e.g. related to #8045) we decided that it makes sense to distinguish default values (not existi...
- 12:50 PM task #9826 (New): Move pure TaxEditor predicates back to taxeditor code
- In #8062 with commit 3c2c16c0 we moved taxeditor predicates to cdmlib as we needed to handle default values server si...
- 11:02 AM bug #4721 (Worksforme): RestServices for list methods return error when index is out of range
- works now:
https://int.e-taxonomy.eu/cdmserver/integration_palmae/classification.json?start=1&limit=3
returns... - 10:52 AM bug #9811 (Closed): regression through removal of `TaxonRelationshipBeanProcessor` ?
- confirmed
- 10:51 AM task #3346 (Worksforme): Team.addListenerForTeamMember(Person member) adds idle listener
- The listener now obviously calls `resetCaches()`, so this is fixed.
- 10:36 AM bug #9817 (Closed): AggregationWizard: Changing the maxRank results in empty minRank
- Ok, so I think we can close this ticket now. Or is there still an open issue?
- 10:25 AM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
- Andreas Müller wrote:
> The problem itself is fixed now. There is a minor issue left: if a lowest rank is chosen the... - 09:15 AM feature request #9511 (New): Move specimens/individual associations for matrix into same description
- This is still an open issue. Tested with my local installation.
10/25/2021
- 11:36 PM feature request #9511: Move specimens/individual associations for matrix into same description
- ?
- 11:35 PM bug #9817 (Feedback): AggregationWizard: Changing the maxRank results in empty minRank
- 11:35 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
- The problem itself is fixed now. There is a minor issue left: if a lowest rank is chosen the "Highest rank" combo sti...
- 01:42 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
- Tested for Structured DDS test:
* select highest rank "Order", select lowest rank "species"
* select highest rank... - 11:23 PM bug #9281 (Closed): Set basionym not available for heterotypic synonyms after drag & drop
- works as expected
- 01:14 PM bug #9281: Set basionym not available for heterotypic synonyms after drag & drop
- Tested on rem_conf_am:
Created new heterotypic synonym by using right click menu, creating second heterotypic syno... - 11:19 PM bug #9818 (Closed): Sources not visible for disabled DescriptionElements
- works as expected
- 01:33 PM bug #9818: Sources not visible for disabled DescriptionElements
- Tested on rem_conf_am Descripta prima, sources can be expanded but are not editable, so it works as expected.
- 11:14 PM bug #9819 (Feedback): Rename "Nameeditor" to "Taxon Editor" in menus
- Please check that always both translations are adapted. E.g. there is a change in eu.etaxonomy.taxeditor.bulkeditor/O...
- 01:30 PM bug #9819: Rename "Nameeditor" to "Taxon Editor" in menus
- Tested in taxon navigator and bulk editor and open in ... shows "taxon editor"
- 10:57 PM bug #9815 (Closed): When removing all elements of a description, the description disappears from factual data view, but still exist
- works as expected
- 01:47 PM bug #9815: When removing all elements of a description, the description disappears from factual data view, but still exist
- Tested with Descripta prima:
* create a new Factual Data Set and add new distribution
* create another new factua... - 10:55 PM bug #9821 (Feedback): Description sources shown for description elements should not be editable
- It works for sources loaded during the session but not yet for sources created during the session.
I created a new... - 01:23 PM bug #9821: Description sources shown for description elements should not be editable
- Tested with Descripta prima Dall. in Descriptive DS test.
Categorical as well as quantitative data worked as expec... - 10:36 PM bug #9806: Clones should not be editable in factual data view and elsewhere
- Should we split this ticket?
- 01:47 PM bug #9816 (In Progress): Implement correct handling of more than one element for a character
- 10:31 AM bug #9825 (Closed): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
- The selection wizard for areas for the distribution editor shows the vocabularies twice in cuba, this is a multilangu...
- 10:27 AM bug #9824 (New): [Distribution Editor] Areas in header should be sorted hierarchically
- mail WB:
c) kann man den Header der Tabelle hierarchisch anordnen? Ich nahm an, das wäre die „natural“ Option in d... - 10:23 AM bug #9823 (New): [Distribution Editor] Unsaved changes not shown in correct column when changing areas
- mail WB:
a) Ein wichtiger Bug: Wenn man die Auswahl der areas ändert, ohne vorher gespeichert zu haben, werden die...
10/22/2021
- 11:33 AM feature request #7675 (Feedback): Make columns with default values togglable
- I do not understand the intention of this ticket, if a default value exist no exact values from the specimen should b...
- 11:17 AM bug #9815 (Resolved): When removing all elements of a description, the description disappears from factual data view, but still exist
- please review.
10/21/2021
- 09:30 AM bug #9814 (Resolved): Advanced search webservice for area throws NPE (mexico portal)
- Added the vocDto to termDto when creating the termDto because the voc representations are needed for the term search....
10/20/2021
- 04:46 PM bug #9819 (Resolved): Rename "Nameeditor" to "Taxon Editor" in menus
- Searched for all "Namenseditor" and "name editor" strings and replaced it by "taxon editor"/"Taxon Editor"
- 04:40 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
- This should be fixed, please review.
- 04:30 PM bug #9817 (Resolved): AggregationWizard: Changing the maxRank results in empty minRank
- Applied in changeset commit:taxeditor|9f84c59541baaae91592b1870fd11d5c802d68a8.
- 03:28 PM bug #9821 (Resolved): Description sources shown for description elements should not be editable
- This should be fixed. Please review.
- 12:49 PM bug #9821 (Closed): Description sources shown for description elements should not be editable
- Since #7774 sources for descriptions are shown in the details view for description elements.
However, they should no... - 01:18 PM feature request #9771: Implement Cdm2Cdm for vocabularies
- Note: in TaxEditor there is a first version for handling a second CdmServer at CdmServerInfo.getDevServerRemoteSource()
- 01:11 PM task #9822 (New): Improve performance for DDS aggregation
- e.g. by faster loading of data and by not reloading the full dataset after aggregation (there might be a ticket for t...
- 11:32 AM bug #9811 (Resolved): regression through removal of `TaxonRelationshipBeanProcessor` ?
- solved, see http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/search/results/taxon?ws=portal%2Ftaxo...
10/19/2021
- 03:23 PM bug #9818 (Resolved): Sources not visible for disabled DescriptionElements
- This should be fixed.
- 03:21 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
- I checked advance search on test servers and it works again: http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm...
- 03:19 PM bug #9806 (In Progress): Clones should not be editable in factual data view and elsewhere
- Now cloned descriptions are disabled like computed descriptions.
- 02:49 PM bug #9281 (Resolved): Set basionym not available for heterotypic synonyms after drag & drop
- This should be fixed, please review.
- 11:18 AM bug #9820 (New): OptionalDataException when saving character matrix
- After moving all used elements to Dtos the character matrix still needs a lot of time to start and sometimes an optio...
- 10:39 AM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- Katja Luther wrote:
> Actually maybe this was the wrong ticket because the exception coming up again was not an OutO...
10/18/2021
- 05:09 PM bug #8936: Improve default distribution formatting
- there was a problem with the release in the master branch, some commits have been lost. this is fixed and it is now t...
- 03:59 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
- this method is only used in the TaxEditor:
~~~
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor... - 02:09 PM bug #9814 (Feedback): Advanced search webservice for area throws NPE (mexico portal)
- I fixed the NPE so it does not throw an exception anymore. However, we need to discuss how the TermDTO should behave....
- 12:02 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
- This is strange, the actual method getVocRepresentation_L10n_abbreviatedLabel() is never called in cdmlib so I don't ...
- 11:58 AM bug #9814 (Closed): Advanced search webservice for area throws NPE (mexico portal)
- ... Die Area-Terme in der Suche fehlen gerade komplett, das der Webservice nichts zurückliefert: https://132.248.13.8...
- 03:07 PM bug #9819 (Closed): Rename "Nameeditor" to "Taxon Editor" in menus
- follow up for #9744
Currently the "open in" context menu still uses Nameeditor.
Please also check for other occ... - 02:23 PM bug #9818 (Closed): Sources not visible for disabled DescriptionElements
- The sources of disabled description elements are not expandable but should.
- 02:02 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
- Actually maybe this was the wrong ticket because the exception coming up again was not an OutOfMemoryException but an...
- 01:51 PM bug #8783 (Feedback): Massive Heap consumption in server instance opening the Description-Matrix editor
- Was comment 16 ("changed from Closed to In Progress") a mistake, it completely misses any explanation?
I am assumin... - 12:54 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- If we reopen then we should adapt the milestone. But maybe it is better to keep this closed and create a new ticket a...
- 12:44 PM bug #8783 (In Progress): Massive Heap consumption in server instance opening the Description-Matrix editor
- 01:37 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
- This is a regression therefore setting to 5.28
- 01:12 PM bug #9817 (Closed): AggregationWizard: Changing the maxRank results in empty minRank
- mail AM:
wenn ich den max-Rank beim DDS Aggregationsdialog ändere wird immer der min-Rang auch gelöscht. Auch in F... - 01:10 PM bug #9816 (Closed): Implement correct handling of more than one element for a character
- Implement correct handling in the character matrix, if two or more elements exist for one character. If one of the el...
- 12:35 PM bug #9815 (Closed): When removing all elements of a description, the description disappears from factual data view, but still exist
- mail AM:
wenn ich mehrere Descriptions in eine merge im Facts View und somit eine volle und eine komplett leere üb... - 11:18 AM bug #398 (Worksforme): DIPTERA: Typestatus entered as Notes for NameTypes
- Ich glaube dieses Ticket können wir schließen.
Keinerlei Hinweise darauf, was gemacht wurde, daher WORKSFORME - 10:38 AM bug #9813 (New): Details view should be available for literature (and default) descriptions in character matrix
- this is a subticket #9799 but with highest priority as adding sources to literature descriptions is essential functi...
10/15/2021
- 07:27 PM feature request #6387 (Closed): [Rule] Rank rule for CultivarPlantNames
- Added a level 2 rule that checks if cultivar (ICNCP) names have a cultivar rank.
Of course there could be much mor... - 05:55 PM bug #9785 (In Progress): Update script for missing measurment unit_ids (matrix)
- The above update should run with error recovery to avoid a break in update if the SQL fails (especially for non-MySQL)
- 05:53 PM bug #9785: Update script for missing measurment unit_ids (matrix)
- Some search SQL:
~~~sql
SELECT deb.id, fe.id, fe.titleCache -- , COUNT(*) AS n
FROM DescriptionElementBase deb... - 05:52 PM bug #9785: Update script for missing measurment unit_ids (matrix)
- An Update for MySQL:
~~~
UPDATE DescriptionElementBase deb LEFT OUTER JOIN DefinedTermBase fe ON fe.id = deb.feat... - 04:14 PM bug #9477 (Closed): New ordered terms do not have correct order index
- 04:10 PM feature request #8979 (Closed): Prevent misuse of field initial for personal names
- 12:05 PM feature request #8979: Prevent misuse of field initial for personal names
- In Vaadin perfectly implemented there 100%, but did not check the TaxEditor if it is there relevant.
- 04:09 PM task #9308 (Closed): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- 11:33 AM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- Task is perfectly implemented, ticket can be closed.
- 04:06 PM bug #8936: Improve default distribution formatting
- It looks item suffix is currently not yet handled correctly in Drupal Code.
Example from mexico flora: https://13... - 12:17 PM bug #9812 (Closed): Display of scientific name in the list-view of Vaadin
- As of 15 Oct 2021 scientific names (Vaadin release system) are displayed mainly without blanks between genus, species...
- 11:59 AM feature request #7640 (Closed): Update ISO country names where necessary
- 11:49 AM feature request #7640: Update ISO country names where necessary
- I am happy with the implementation, short names and it is clear which country is meant. Tested it in Vaadin, release ...
10/13/2021
- 03:22 PM bug #9797 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- new ticket for the open issue #9811
- 03:22 PM bug #9811 (Closed): regression through removal of `TaxonRelationshipBeanProcessor` ?
- It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture502-1.pn...
10/12/2021
- 05:45 PM task #9123 (Closed): Fix BigDecimal algebra in aggregation algorithms
- Moved polytomous key handling to new ticket #9810
- 05:35 PM task #9810 (New): Test if BigDecimal algebra is correct in PolytomousKey algorithms
- copied from #9123 and #8978
Aggregation is checked and fixed in the meanwhile (#9123) - 05:31 PM feature request #9798 (Closed): Import Spanish representations for countries
- 04:02 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture143-1.pn... - 02:25 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- There are still problems with loading MAN, e.g. https://europlusmed.org/cdm_dataportal/search/results/taxon?ws=portal...
- 02:37 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
- 02:30 PM bug #9808 (Resolved): option to disable ssl/tsl certificate validation of the cdm webserver
- Applied in changeset commit:cdm-dataportal|91313ab4c0d34ddd9d9c745e268b16c4eefe234b.
- 02:29 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
- in situations when a self signed certificate is being used with the cdmserver it is needed to disable certificate val...
- 02:37 PM feature request #9786 (Closed): Implement tags CY and fix PY handling for RIS import
- This should work as tests exist. If there are open issues we should add them to #9809
- 02:35 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
- Generally this works. However, there are a couple of open issues handled in #9809.
- 02:34 PM feature request #9809: Implement further tags for RIS reference import
- NaK:
Nur bei Book Chapters funktioniert der Import nur teilweise, dafür muss man ja das Buch separat anlegen und d... - 02:31 PM feature request #9809 (New): Implement further tags for RIS reference import
- in #6636 and #9786 the most important tags for RIS import have been implemented. However, there are a couple of more ...
10/11/2021
- 09:55 PM feature request #6818: Default Image Viewer: setting to enable display of 'Media Representations'
- According to commit this was fixed in 4.9
- 09:49 PM bug #7979: Registration date and time, display
- Can we adapt milestone or remove it?
- 09:46 PM bug #4721 (Feedback): RestServices for list methods return error when index is out of range
- Is this still an open issue? The above link seems to return a correct empty list now.
- 09:10 PM bug #3635: Protologue media should also be displayed when mime type is missing
- is this still an open issue?
- 09:08 PM bug #3511: errors are not cleared after reloading the configuration
- is this still an open issue?
- 08:52 PM bug #2592 (Worksforme): InvalidDataAccessApiUsageException when saving description scope
- I could save a scope for a description now so I guess this issue is solved in the meanwhile.
- 08:15 PM bug #5484 (Worksforme): Connecting to local H2 via local Mgd throws NPE in CdmServiceCacher
- I cannot reproduce therefore close as worksforme
- 08:14 PM bug #5485 (Duplicate): h2 database connection fails if datasource view is open
- This is either fixed already or will be fixed once #9742 is fixed. I tested with a workaround using AUTO_SERVER=TRUE
- 08:01 PM feature request #9771 (In Progress): Implement Cdm2Cdm for vocabularies
- 05:05 PM bug #9807: Matrix should not collapse after aggregation
- AM 2021-10-1:
... Wir müssten also entweder doch herausfinden, woran es liegt, dass diese zusätzlichen Knoten ents... - 04:57 PM bug #9807 (Closed): Matrix should not collapse after aggregation
- As the refresh after aggregation lead to row duplications (of taxa and maybe others) it was temporarily implemented i...
- 04:37 PM feature request #8706 (Closed): taxeditor error report with timestamps
- I guess we can close this ticket. Timestamping generally works. Open new ticket if there are open issues left.
- 04:34 PM feature request #8467 (Closed): Save a "snapshot" of the SpecimenDescriptions used for aggregation
- This for me seems to be fixed. Open issue on visibility of clones moved to new ticket #9806
- 04:32 PM bug #9806: Clones should not be editable in factual data view and elsewhere
- AM: (2021-10-7)
Descriptions Clones, die an Specimens oder auch Taxa hängen sind derzeit noch normal bearbeitbar.
... - 04:31 PM bug #9806 (Closed): Clones should not be editable in factual data view and elsewhere
- copied from #8467:
Currently only aggregated data are not editable (depending on configuration). Also cloned data ... - 04:04 PM feature request #7981 (Closed): Add configuration UI for matrix description aggregation
- I created a ticket for old and new open issues: #9805
- 04:03 PM feature request #9805 (New): Open issues for DDS aggregation dialogue
- copied from #7981
- ~~aggregating full dataset does not work~~ (#9803)
- ~~matrix should not collapse after aggre... - 03:30 PM feature request #7980 (Closed): Enhance matrix description aggregation
- 03:27 PM feature request #7980: Enhance matrix description aggregation
- open issues moved to #9804
- 03:27 PM feature request #9804 (New): Further enhance description aggregation
- copied from #7980
- consider default values during aggregation
- deal with outliers etc.
- improve error and ... - 02:33 PM feature request #9795 (Closed): Add literature descriptions to matrix aggregation
- 02:32 PM bug #9803: Aggregating full dataset does not work
- Related to this I found that there is redundancy in the code. This lead to a failing fix for the rank handling as it ...
- 12:53 PM bug #9803 (Closed): Aggregating full dataset does not work
- Choosing "Aggregate all taxa of the descriptive datase" currently does not work.
This is because the dataset varia... - 11:24 AM bug #9802 (New): Label for min=max does not unify values in Matrix QuantitativeData label provider
- e.g. I get [987-987] instead.
Also the unit is missing.
In general we should try to unify the matrix label with...
10/08/2021
- 09:18 PM bug #9801 (New): Orphan removal does not work correctly for CdmLinkSource
- as part of OriginalSourceBase. As it is 1:1 the mapping should be done the other way round to make orphan removal wor...
10/07/2021
- 01:50 AM feature request #9795 (Resolved): Add literature descriptions to matrix aggregation
- this is probably fully resolved
- 01:49 AM task #8871 (In Progress): Remaining issues to unify description aggregation methods
10/06/2021
- 11:31 AM bug #9510 (In Progress): Improve label for descriptions created via DDS matrix
- 11:26 AM feature request #9511 (Resolved): Move specimens/individual associations for matrix into same description
- This seems to be fixed in the meanwhile. Can you please double check and if true close the ticket?
If you find the... - 09:26 AM bug #6523: Correct display of misspellings in synonymy
- another example case from the carypophyllales portal:
----
ich habe eben gesehen, dass die misspellings im Po...
10/05/2021
- 01:35 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Can you please also leave a note which model objects have been replaced by this ticket?
>
... - 01:21 PM bug #9772 (Resolved): Improve DTO usage for character matrix
- Code cleaning done for TaxonNodeService/Dao and DescriptiveDatasetService.
- 10:54 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Please check also if code is clean. E.g. I found DescriptiveDatasetService.getDescriptiveDat... - 08:45 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Same in TaxonNodeServiceImpl.getTaxonNodeDtos().
>
> By the way I wonder if all these HQL... - 09:40 AM bug #9800 (In Progress): Open issues for character matrix
- * implement the details view again to be able to edit some more advanced data like the modifiers. This worked in earl...
- 09:40 AM bug #9799 (New): Details view should be available for character matrix
- Implement the details view again to be able to edit some more advanced data like the modifiers. This worked in earlie...
- 09:30 AM bug #9073 (Worksforme): Configuring the matrix view throws HTTP invoker exception
- could not reproduce this anymore, so close this ticket.
- 09:20 AM bug #8243: Cdm Cache uses a lot of disk space
- We should have a look on this with the new implementation because the matrix worked with descriptions and descriptive...
- 08:56 AM bug #9074: Specimen missing a collector + n° and missing a collection identifier (Barcode, Accession number) not identifiable in descriptive Matrix
- With the actual implementation the "collector & nr" field is always filled, if a field unit with collector and collec...
10/04/2021
- 04:34 PM bug #9772: Improve DTO usage for character matrix
- Same in TaxonNodeServiceImpl.getTaxonNodeDtos().
By the way I wonder if all these HQL statements are necessary. Ha... - 04:23 PM bug #9772: Improve DTO usage for character matrix
- Please check also if code is clean. E.g. I found DescriptiveDatasetService.getDescriptiveDataSetDtoByUuid() which inc...
- 04:01 PM bug #9772: Improve DTO usage for character matrix
- Can you also check for other open matrix tickets and add the new tag "matrix" to them so we can check for all open ma...
- 03:52 PM bug #9772: Improve DTO usage for character matrix
- Generally we can close this ticket.
- 03:52 PM bug #9772: Improve DTO usage for character matrix
- Can you please also leave a note which model objects have been replaced by this ticket?
And can you check the (new... - 03:50 PM bug #9772: Improve DTO usage for character matrix
- This generally seems to work now as expected.
I guess we need to create a couple of follow-up tickets. I could thi... - 02:24 PM bug #9772: Improve DTO usage for character matrix
- Some more tests (with Lactucinae):
found two issues, both are already fixed:
* avoid NPE for quantitative data ... - 11:33 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Adding a new literature to a taxon does show the taxon row 2x if a specimen description for ... - 11:30 AM bug #9772 (Feedback): Improve DTO usage for character matrix
- Adding a new literature to a taxon does show the taxon row 2x if a specimen description for this taxon existed before...
- 03:35 PM bug #9796 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- the changes seem to solve the initialization problems without noticeable side-effects.
- 01:52 PM bug #9797 (Resolved): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
Also available in: Atom