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From 10/03/2021 to 11/01/2021

11/01/2021

09:32 PM bug #9831: Exception in TermRepresentationUpdater if term does not exist
ahh, good you found this. It is actually not a problem of the update script but of the term loader which was introduc... Andreas Müller
09:31 PM bug #9831 (Resolved): Exception in TermRepresentationUpdater if term does not exist
Applied in changeset commit:cdmlib|43ca311a71a11f78f62f495ee73815fc69f5e0a6. Andreas Müller
01:01 PM bug #9831 (Feedback): Exception in TermRepresentationUpdater if term does not exist
I tested updating of the attached (attachment:cdm_production_caryophyllales_2018-11-16.sql.bz2) database on ws1 and i... Andreas Kohlbecker
11:53 AM bug #9831: Exception in TermRepresentationUpdater if term does not exist
Andreas, can you test this with an old database on WS1. Andreas Müller
09:30 PM Revision f4543616 (cdmlib): cleanup
Andreas Müller
09:30 PM Revision 43ca311a (cdmlib): fix #9831, ref #9477 fix failing term loading for unordered missing terms
Andreas Müller
06:08 PM bug #9834 (Feedback): Cannot create a nomenclatural standard abbreviation in the Reference author team
I cant reproduce the reported problem.
* Did you test this with the test system?
* If yes, could you give some mo...
Andreas Kohlbecker
05:12 PM bug #6978 (Worksforme): NPE in DefaultReferenceCacheStrategy
yes, this is fixed, ticket can be closed Andreas Kohlbecker
04:26 PM Revision a5f3077d (cdm-vaadin): ref #9837 updating vaadin to latest open source version and updating jsoup to fix https://vaadin.com/security/2021-10-27 by our self - commented, due to code incompatibility
Andreas Kohlbecker
03:56 PM bug #9816: Implement correct handling of more than one element for a character
Then the ticket is not correctly implemented as there is yellow 2x in existing as described above. I also cannot beli... Andreas Müller
03:45 PM bug #9816: Implement correct handling of more than one element for a character
Andreas Müller wrote:
> I found an open issue: The literature description of Descripta prima in the test dataset for...
Katja Luther
03:19 PM bug #9816 (Feedback): Implement correct handling of more than one element for a character
I found an open issue: The literature description of Descripta prima in the test dataset for bush color has 1 record ... Andreas Müller
03:38 PM task #9833 (Closed): Remove cascading from descriptive dataset
I intensively tested saving DDS with new ranks, feature trees, subtrees and descriptions and everything seems to work... Andreas Müller
03:30 PM bug #9803 (Closed): Aggregating full dataset does not work
Works as expected Andreas Müller
03:23 PM bug #9807 (Feedback): Matrix should not collapse after aggregation
The current solution solves that the matrix is completely collapsed which is helpful. However the aim is to keep it e... Andreas Müller
03:14 PM task #9837 (Resolved): updadte vaadin to latets 7.* version
Andreas Kohlbecker
03:12 PM task #9837: updadte vaadin to latets 7.* version
instead of updating vaadin itself it should be sufficient to upgrade the vulnerable jsoup dependency Andreas Kohlbecker
02:59 PM task #9837: updadte vaadin to latets 7.* version
updating any component to the latest vaadin 7 release requires the pro license:
Vaadin 7.7.17 was the last public ...
Andreas Kohlbecker
12:46 PM task #9837 (In Progress): updadte vaadin to latets 7.* version
due to https://vaadin.com/security/2021-10-27 we needed to update vaadin.server quickly.
Updating of vaadin-client...
Andreas Kohlbecker
03:14 PM Revision 6ad3a403 (cdm-vaadin): ref #9837 updating vaadin to latest open source version and updating jsoup to fix https://vaadin.com/security/2021-10-27 by our self
Andreas Kohlbecker
01:42 PM feature request #9840 (New): Add the possibility to enter new server
We need a possibility to enter new servers into the json file, therefore it should be possible to add a new server fr... Katja Luther
01:09 PM bug #9838: Loading of details of categorical and quantitative data takes very long
The long time loading was produced by a mistake in term manager.
The extreme number of loaded objects is caused by...
Katja Luther
01:06 PM bug #9838 (Closed): Loading of details of categorical and quantitative data takes very long
The loading of the details view of categorical data or quantitative data takes really long and the loaded objects in ... Katja Luther
01:08 PM feature request #9839 (New): Show distanceToGround on the occurrence page
Currently, only "alt." is displayed.
PhycoBank enables the following parameter:
Distance to water surface (= wa...
Wolf-Henning Kusber
12:47 PM Revision d5673a19 (cdm-vaadin): ref #9837 updating vaadin-server
Andreas Kohlbecker
09:28 AM feature request #9836: Make nameUsedInSource available for secundum references
Andreas Müller wrote:
> We should also think about improved structuring for the preference page of the name/taxon de...
Katja Luther
09:18 AM feature request #9836 (In Progress): Make nameUsedInSource available for secundum references
As a first step the name in Source field was added. We have to decide whether we want to have the own section in this... Katja Luther
09:16 AM Revision 5a27a3cc (taxeditor): ref #9836: add name in Source for Secundum source
Katja Luther

10/29/2021

11:55 PM feature request #9836: Make nameUsedInSource available for secundum references
We should also think about improved structuring for the preference page of the name/taxon details view preferences. C... Andreas Müller
11:53 PM feature request #9836: Make nameUsedInSource available for secundum references
Maybe the secundum source should get an own section similar to nomenclatural source so it becomes clearer what belong... Andreas Müller
11:50 PM feature request #9836 (Closed): Make nameUsedInSource available for secundum references
For some reason probably during #9549 the nameUsedInSource field for secundum references is not visible in the TaxEdi... Andreas Müller
01:25 PM feature request #6050 (Closed): provide the possibility to choose the fields of the simple details view for names
created a new ticket with remaining issues and close this ticket. Katja Luther
01:10 PM feature request #6050 (In Progress): provide the possibility to choose the fields of the simple details view for names
Andreas Müller wrote:
> There are some functional issues:
>
> * ~~"Show appended phrase" can not be switched on~...
Katja Luther
01:24 PM bug #9835 (New): Remaining issues for NameDetailsView Configuration
copied from #6050:
Additionally there are layout and labeling issues
* No German translation
* (maybe function...
Katja Luther
01:19 PM Revision 244abf53 (taxeditor): avoid NPE
Katja Luther
11:57 AM feature request #5972 (Closed): Prevent user from unwanted author and reference updates
Andreas Müller wrote:
> It looks like it wokrs only for references until now. But we need it for all objects (if thi...
Katja Luther
11:50 AM feature request #5671 (In Progress): Name selection should not allow self referencing name relationships
this is still an open issue Katja Luther
11:43 AM feature request #5365 (Closed): Add delete configurator to Media View image gallery
The NPE is fixed in the meanwhile, so i close the ticket. Katja Luther
11:34 AM bug #4945 (In Progress): Right click menu for polytomous key node list view needs correct enabling
Andreas Müller wrote:
> is this still an open issue?
Yes, the menu shows delete and refresh even though there is ...
Katja Luther
11:26 AM bug #4821: Changing order of terms not possible
Andreas Müller wrote:
> For ordered terms it seems to work now (though there are other issues but they will be handl...
Katja Luther
11:26 AM bug #4821 (Resolved): Changing order of terms not possible
Applied in changeset commit:taxeditor|8cebdfe48f07309665d5d9cdc8d39e05feec7478. Katja Luther
11:25 AM Revision 8cebdfe4 (taxeditor): fix #4821: do not show possibility to move between terms for anordered terms
Katja Luther
11:00 AM bug #9807: Matrix should not collapse after aggregation
please review Katja Luther
10:02 AM bug #9807 (Resolved): Matrix should not collapse after aggregation
this is fixed. Katja Luther
10:37 AM Revision 7ffca7dc (taxeditor): revert expand the matrix completely
Katja Luther
10:23 AM bug #9834 (Closed): Cannot create a nomenclatural standard abbreviation in the Reference author team
Bug applies to Release/Test:
Unale to create nomenclatural authors, once a new reference or a in-reference is crea...
Wolf-Henning Kusber
10:00 AM Revision a9136afc (taxeditor): expand the matrix completely
Katja Luther
09:50 AM bug #9803: Aggregating full dataset does not work
tested on rem_conf_am. works with Structured dds test. Katja Luther
09:22 AM bug #9803 (Resolved): Aggregating full dataset does not work
this is fixed. Katja Luther
09:24 AM Revision 254fe5a2 (taxeditor): code cleaning
Katja Luther
09:17 AM Revision e9941985 (cdmlib): ref #9803: fix not loaded subtree in DDS
Katja Luther
08:52 AM Revision 727c9cd2 (taxeditor): expand matrix after aggregation
Katja Luther

10/28/2021

04:11 PM Revision 447a6c83 (taxeditor): adapt getCurrentSampleDesignation to new getIdentifier methods
Andreas Müller
04:01 PM Revision a2af4a1c (cdmlib): adapt getIdentifier methods (cont.)
Andreas Müller
03:56 PM Revision 18f5dece (cdmlib): adapt getIdentifier methods
Andreas Müller
03:18 PM Revision dfb6afeb (taxeditor): fix getCurrentSampleDesignation
Katja Luther
01:33 PM Revision b27c9233 (taxeditor): increase server connect timeout from 1s to 3s
Andreas Müller
01:33 PM Revision 0c45efba (taxeditor): typo
Andreas Müller
12:04 PM task #9833 (Resolved): Remove cascading from descriptive dataset
Applied in changeset commit:cdmlib|f51cbc4e73cba3be1ebdd46613626b742698763e. Andreas Müller
10:33 AM task #9833 (Closed): Remove cascading from descriptive dataset
Cascading for descriptive system (feature tree), subtree filter (taxon nodes) and geo filter (named areas) is not nec... Andreas Müller
12:03 PM Revision f51cbc4e (cdmlib): fix #9833 remove cascading in DDS to descriptions
Andreas Müller
12:02 PM Revision 1ac5959f (cdmlib): preliminary ignore test as it does not run in test suite
Andreas Müller
12:01 PM Revision c3decf23 (cdmlib): cleanup
Andreas Müller
11:45 AM Revision cfc64b74 (taxeditor): cleanup
Andreas Müller
11:01 AM Revision 7e908a79 (cdmlib): cleanup
Andreas Müller
10:45 AM Revision 79fadb72 (cdmlib): rename DescriptiveDataSetServiceTest
Andreas Müller
10:41 AM Revision aae4cb3d (taxeditor): fix term caching for term type and avoid doubled call of populate terms
Katja Luther
10:39 AM Revision dc8980a4 (cdmlib): ref #9833 remove cascading in DDS to descriptiveSystem, geoFilter and subtreeFilter
Andreas Müller
09:48 AM Revision 75f21cbb (taxeditor): minor
Katja Luther
01:27 AM Revision 19744d89 (taxeditor): cleanup
Andreas Müller

10/27/2021

06:49 PM feature request #9832 (New): Make StatisticalMeasurementValues and StateData available in SupplementalData view
Currently it is not possible to select those in details view for factual data. Only the categorical/quantitative data... Andreas Müller
06:01 PM bug #7634: Timeout/Performance problems in Taxeditor
WGB:
weiß ich nicht – habe schon länger nicht mehr von zu Hause aus mit dem TE gearbeitet.
Andreas Müller
05:34 PM Revision 97fb032d (cdmlib): first steps for rowwrapper tests
Katja Luther
04:46 PM bug #9816: Implement correct handling of more than one element for a character
Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > This works as expected. Only a few minor...
Katja Luther
01:44 PM bug #9816 (Resolved): Implement correct handling of more than one element for a character
Katja Luther wrote:
> Andreas Müller wrote:
> > This works as expected. Only a few minor thinks:
> >
> > * for ...
Katja Luther
01:37 PM bug #9816: Implement correct handling of more than one element for a character
Andreas Müller wrote:
> This works as expected. Only a few minor thinks:
>
> * for users it might be unclear why...
Katja Luther
11:43 AM bug #9816 (Feedback): Implement correct handling of more than one element for a character
This works as expected. Only a few minor thinks:
* for users it might be unclear why the cell is greyed. So maybe...
Andreas Müller
08:50 AM bug #9816: Implement correct handling of more than one element for a character
Tested with Structured DDS Test:
* For Descripta prima there exist two elements for "bush property", they are grey...
Katja Luther
04:28 PM bug #6106 (Closed): [Discuss] Handle rights and roles for CdmPreferences
Andreas Müller
12:23 AM bug #6106 (Resolved): [Discuss] Handle rights and roles for CdmPreferences
CDM Preferences are currently only available via the Admin menu which, I think, is only available for admin and Role_... Andreas Müller
04:15 PM bug #8343: potential timezone problem in application stack
Is this solved in the meanwhile? https://www.phycobank.org/cdm_dataportal/registration-search/filter?identifier=10016... Andreas Müller
04:06 PM bug #8291: saving text with special characters throws exception
Can you give some more input what characters cause problems? Andreas Müller
04:02 PM feature request #6162: Implement "Forgot your password?" button in the Taxeditor connect dialog
As AK is currently working on this for Vaadin I move this ticket to the next but one milestone Andreas Müller
03:59 PM feature request #6161: Service and webservice to recover forgotten passwords
I move this to next milestone as it is what you are currently work on as far as I know. Andreas Müller
03:47 PM feature request #6865: [DISCUSS] Separator for Code and Accession Number
NoK:
eine Lösung wie „B: B 10 0018600“ finde ich gut; auf keinen Fall Deduplizieren für B, das bringt nur unschöne...
Andreas Müller
03:18 PM Revision 6722a199 (taxeditor): ref #9816: tooltip and disabled field for taxon descriptions also - continue
Katja Luther
02:30 PM Revision 2f45fa53 (taxeditor): ref #9816: tooltip and disabled field for taxon descriptions also
Katja Luther
01:35 PM Revision c9fd6dd7 (taxeditor): ref #9816: adapt tooltip text
Katja Luther
01:25 PM Revision 49f4efde (taxeditor): ref #9816: add tooltip to disabled fields and change color of fields with default value
Katja Luther
11:16 AM bug #6548 (Closed): NPE in DeduplicationHelper
Tested with two open editors and deduplicated the same references. Saving the second deduplication results in a merge... Katja Luther
01:33 AM bug #6548 (Resolved): NPE in DeduplicationHelper
I guess this was fixed with commit:c3794190 . Please verify and move to v4.8 if correct. Andreas Müller
11:04 AM Revision d146cd8f (taxeditor): ref #9821: no references yet should be shown only once
Katja Luther
10:50 AM bug #6202 (Worksforme): Disable "New" button in toolbar when editor is not connected
Andreas Müller
10:49 AM bug #6202 (Closed): Disable "New" button in toolbar when editor is not connected
Katja Luther
10:49 AM bug #6202: Disable "New" button in toolbar when editor is not connected
Yes this is fixed. Katja Luther
12:59 AM bug #6202 (Resolved): Disable "New" button in toolbar when editor is not connected
I guess this is fixed in the meanwhile. Can you please verify and remove target version if true. Andreas Müller
10:47 AM bug #9814 (Closed): Advanced search webservice for area throws NPE (mexico portal)
This works as expected. Katja Luther
10:13 AM Revision b1dbf58c (cdmlib): further reduce minFreeHeap for aggregation tests
Andreas Müller
10:08 AM Revision 67603589 (cdmlib): ref #9831 reduce error handling for missing terms, languages or representations from error to warning in Adder
Andreas Müller
10:07 AM Revision 4371ee3e (cdmlib): fix stepList handling in SingleTermUpdater
Andreas Müller
10:07 AM Revision 5ab2bdcf (cdmlib): cleanup
Andreas Müller
09:49 AM bug #9831 (Resolved): Exception in TermRepresentationUpdater if term does not exist
Applied in changeset commit:cdmlib|d5693d330120d64d73392743a05f102b33ca0865. Andreas Müller
09:41 AM bug #9831 (Closed): Exception in TermRepresentationUpdater if term does not exist
observed during CoL update
~~~
Errors:
=======
Term for representations update does not exist. Term not updat...
Andreas Müller
09:48 AM Revision d5693d33 (cdmlib): fix #9831 reduce error handling for missing terms, languages or representations from error to warning in TermRepresentationUpdater
Andreas Müller
09:21 AM bug #9830: México Distrito Federal needs accent
I updated the csv file but we still need an update script. Andreas Müller
09:21 AM bug #9830: México Distrito Federal needs accent
~~~
SELECT *
FROM Representation dtb
WHERE dtb.label LIKE '%México Distrito Federal%'
SELECT *
FROM DefinedTer...
Andreas Müller
09:10 AM bug #9830 (New): México Distrito Federal needs accent
copied from #7200
for details see there
Andreas Müller
09:18 AM Revision 598b79bf (cdmlib): ref #9830 add accent to México Distrito Federal in TdwgArea.csv
Andreas Müller
09:13 AM bug #7200 (Worksforme): México Distrito Federal spelling and ignore accents in area search
I split the ticket. Correct spelling for „México Distrito Federal“ is now handled in #9830 as this needs a model chan... Andreas Müller
09:11 AM bug #7200: México Distrito Federal spelling and ignore accents in area search
NK:
Ja, searching for "Mexico" also returns "México State"
Aber es heißt immer noch „Mexico Distrito Federal“ sta...
Andreas Müller
08:32 AM Revision 888a0d35 (taxeditor): avoid NPE for root node
Katja Luther
01:46 AM bug #6978 (Resolved): NPE in DefaultReferenceCacheStrategy
I guess this is fixed in the meanwhile. The above link gives a result (though taking time) and the mentioned method R... Andreas Müller
01:37 AM bug #6768 (Duplicate): NumberFormatException during BHL query
duplicates #6861 Andreas Müller
12:54 AM bug #6191 (Worksforme): Update context menu in name editor after "Change to accepted taxon"
I can't reproduce this. Probably it has been fixed in the meanwhile. Andreas Müller
12:46 AM bug #6181 (In Progress): Deleting a misapplied name does not set the dirty flag
There is a warning now saying that the operation is not revertable and additionally the dirty flag is set. Also I tes... Andreas Müller
12:35 AM bug #6121 (Feedback): NPE during portal web service requests that go through BaseController.doGetMethod()
Is this still an open issue? I tested with http://api.cybertaxonomy.org/euromed/portal/taxon/4a889e6c-9816-4745-9d06-... Andreas Müller
12:23 AM feature request #9829 (New): Secure writing methods for CdmPreferences with role Role_Project_Manager
copied from #6106
for details see there and in related tickets.
Andreas Müller

10/26/2021

11:52 PM bug #6098: Improve session handling for TaxonNavigator and newTaxonNodeWizard
Is this still an open issue? Andreas Müller
11:46 PM Revision e2bb62a5 (cdmlib): ref #6025 add comment to test dependency
Andreas Müller
11:45 PM Revision 7451ea0f (cdmlib): cleanup
Andreas Müller
11:33 PM bug #9828 (New): Preferred stable URI (and maybe other data) are not shown in specimen table if no field unit exists
If the specimen is only a derived unit with e.g. all field unit data in protected cache but with a prefered stable UR... Andreas Müller
10:53 PM bug #5863 (Resolved): Specimen tab condensed table does not show Collection for single collection
For me this ticket seems to be fixed in the meanwhile. Can you please double check and remove target version/set to w... Andreas Müller
10:37 PM bug #5517 (Worksforme): Update label for synonym types
As we do not use synonym relations anymore the relationship type is not shown anymore in the TaxEditor. However, inte... Andreas Müller
09:59 PM bug #7200 (Resolved): México Distrito Federal spelling and ignore accents in area search
This seems to be fixed in the meanwhile. At least searching for "Mexico" also returns "México State". Norbert, can yo... Andreas Müller
05:55 PM bug #7200: México Distrito Federal spelling and ignore accents in area search
How to implement java side accent insensitive compare or contains is e.g. explained here:
https://stackoverflow.co...
Andreas Müller
05:45 PM bug #7200: México Distrito Federal spelling and ignore accents in area search
Andreas Kohlbecker wrote:
> These types of problems are usually rather a question of the collation being used in the...
Andreas Müller
06:37 PM bug #9812 (Closed): Display of scientific name in the list-view of Vaadin
The bug is fixed, fine (tested in Vaadin Test), closed the ticket. Wolf-Henning Kusber
02:28 PM bug #9812: Display of scientific name in the list-view of Vaadin
@henning, please review Andreas Kohlbecker
11:54 AM bug #9812 (Resolved): Display of scientific name in the list-view of Vaadin
Applied in changeset commit:cdm-vaadin|0b1a05647fb83bfc590202a8a5d7a844d7605ba5. Andreas Kohlbecker
11:38 AM bug #9812: Display of scientific name in the list-view of Vaadin
to reproduce search for "Planothidium cryptolanceolatum" in http://api.phycobank.org/phycobank/app/registration#!list... Andreas Kohlbecker
11:21 AM bug #9812: Display of scientific name in the list-view of Vaadin
see "preparation" 2019/2020/2021, in the Test and Production system. Wolf-Henning Kusber
06:01 PM bug #8023: IndexOutOfBoundsException caused by RegistrationWorkingSet.getRegistrationDate()
Is this still an open issue? If yes please add category and adapt assignee and or target version. Andreas Müller
05:58 PM bug #7634: Timeout/Performance problems in Taxeditor
Is this still an open issue? Andreas Müller
05:40 PM bug #7049 (Worksforme): DB preferences should allow triple state to allow null values for checkboxes
This is implemented in the meanwhile. Please reopen if you think there is still something missing. Andreas Müller
05:39 PM bug #7048 (Worksforme): DB preferences allow override needs to be implemented per preference, not per preference page
I checked again and it is definetely implemented in the meanwhile (at least for DB preferences). Close as worksforme. Andreas Müller
05:36 PM bug #7048 (Feedback): DB preferences allow override needs to be implemented per preference, not per preference page
I guess this is fixed in the meanwhile. Can you please double-check? Andreas Müller
05:32 PM bug #7979: Registration date and time, display
Andreas Müller wrote:
> Can we adapt milestone or remove it?
??
Andreas Müller
05:28 PM bug #9821 (Closed): Description sources shown for description elements should not be editable
Works as expected. Andreas Müller
03:37 PM bug #9821: Description sources shown for description elements should not be editable
I guess the change of milestone was accidentally Andreas Müller
03:22 PM bug #9821 (Resolved): Description sources shown for description elements should not be editable
Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > It works for sources loaded during the s...
Katja Luther
01:43 PM bug #9821: Description sources shown for description elements should not be editable
Katja Luther wrote:
> Andreas Müller wrote:
> > It works for sources loaded during the session but not yet for sour...
Katja Luther
01:27 PM bug #9821 (In Progress): Description sources shown for description elements should not be editable
Katja Luther
10:19 AM bug #9821 (Resolved): Description sources shown for description elements should not be editable
Andreas Müller wrote:
> It works for sources loaded during the session but not yet for sources created during the se...
Katja Luther
04:49 PM Revision cdb9241f (cdmlib): javadoc
Andreas Müller
04:48 PM Revision cb291ebd (cdmlib): ref #9814 fix vocabularyDtos caching
Andreas Müller
04:36 PM bug #9814 (Resolved): Advanced search webservice for area throws NPE (mexico portal)
I think in general this ticket is fixed as the webservice and TaxEditor do use 2 different methods to initialize the ... Andreas Müller
04:33 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
Andreas Müller wrote:
> In the mentioned method you iterate over all returned dtos and for each you run a query to r...
Andreas Müller
03:52 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
In the mentioned method you iterate over all returned dtos and for each you run a query to retrieve the VocDto. This ... Andreas Müller
03:41 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
who is now in charge of this ticket? Andreas Müller
02:49 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
Andreas Kohlbecker wrote:
> 1. I think adding the VocDto to the termDTOs bloats the reponses with a lot of redundant...
Katja Luther
10:49 AM bug #9814 (Feedback): Advanced search webservice for area throws NPE (mexico portal)
1. I think adding the VocDto to the termDTOs bloats the reponses with a lot of redundant information. In most cases t... Andreas Kohlbecker
04:31 PM Revision f1f5966b (cdmlib): ref #9814 cache vocabularyDtos when loading termDTOs
Andreas Müller
04:25 PM Revision 440ea14c (cdmlib): cleanup
Andreas Müller
04:25 PM Revision 23230c1f (cdmlib): cleanup and javadoc
Andreas Müller
03:31 PM Revision 40e7c19a (cdmlib): ref #9816: avoid NPE
Katja Luther
02:40 PM bug #9816 (Resolved): Implement correct handling of more than one element for a character
The disabling of the fields for two or more elements per feature is implemented.
Actually if one of the fields is ...
Katja Luther
02:03 PM Revision 13866815 (taxeditor): ref #9814: adapt method in editor
Katja Luther
02:01 PM Revision 4af8adcf (cdmlib): ref #9814: rename findByTitleasDto method to findByTitleAsDtoWithVocDto
Katja Luther
01:43 PM Revision df3a895a (taxeditor): ref #9821: renderContent needs to overrite
Katja Luther
01:38 PM bug #9819 (Closed): Rename "Nameeditor" to "Taxon Editor" in menus
I guess we can close this ticket now. Andreas Müller
01:38 PM bug #9819: Rename "Nameeditor" to "Taxon Editor" in menus
Andreas Müller wrote:
> Once this is done we can close the ticket. However, we should think about a new ticket to ad...
Andreas Müller
10:43 AM bug #9819: Rename "Nameeditor" to "Taxon Editor" in menus
Andreas Müller wrote:
> Have you checked partdescriptor.label.2 in eu.etaxonomy.taxeditor.editor/OSGI-INF/l10n/plugi...
Katja Luther
10:25 AM bug #9819 (Feedback): Rename "Nameeditor" to "Taxon Editor" in menus
Have you checked partdescriptor.label.2 in eu.etaxonomy.taxeditor.editor/OSGI-INF/l10n/plugin_de.properties ? And co... Andreas Müller
09:41 AM bug #9819 (Resolved): Rename "Nameeditor" to "Taxon Editor" in menus
Andreas Müller wrote:
> Please check that always both translations are adapted. E.g. there is a change in eu.etaxono...
Katja Luther
01:37 PM task #9827 (New): Rename taxeditor code from name editor to taxon editor
copied from #9819
However, we should think about a new ticket to adapt also code to the new labels. E.g. command.n...
Andreas Müller
01:03 PM Revision e0211b4b (cdmlib): avoid NPE
Katja Luther
01:01 PM Revision ba131d9b (cdmlib): ref #9816: correct handling of empty quant data
Katja Luther
12:59 PM Revision 782249c5 (cdmlib): cleanup and javadoc
Andreas Müller
12:59 PM Revision 07b5ae22 (taxeditor): ref #9816: quantitative data editor needs to handle new descr element correctly
Katja Luther
12:51 PM feature request #8062 (Closed): Make default preferences deletable serverside
So we finally chose solution 3 (from the ticket description) and had to revert some of the changes made here previous... Andreas Müller
12:21 PM feature request #8062: Make default preferences deletable serverside
In later discussions (e.g. related to #8045) we decided that it makes sense to distinguish default values (not existi... Andreas Müller
12:50 PM task #9826 (New): Move pure TaxEditor predicates back to taxeditor code
In #8062 with commit 3c2c16c0 we moved taxeditor predicates to cdmlib as we needed to handle default values server si... Andreas Müller
11:54 AM Revision 0b1a0564 (cdm-vaadin): fix #9812 adding missing blank after non separater tagged text items
Andreas Kohlbecker
11:02 AM bug #4721 (Worksforme): RestServices for list methods return error when index is out of range
works now:
https://int.e-taxonomy.eu/cdmserver/integration_palmae/classification.json?start=1&limit=3
returns...
Andreas Kohlbecker
10:52 AM bug #9811 (Closed): regression through removal of `TaxonRelationshipBeanProcessor` ?
confirmed Andreas Kohlbecker
10:51 AM task #3346 (Worksforme): Team.addListenerForTeamMember(Person member) adds idle listener
The listener now obviously calls `resetCaches()`, so this is fixed. Andreas Kohlbecker
10:42 AM Revision d7f7dcb0 (taxeditor): remove unused labels
Katja Luther
10:36 AM bug #9817 (Closed): AggregationWizard: Changing the maxRank results in empty minRank
Ok, so I think we can close this ticket now. Or is there still an open issue? Andreas Müller
10:25 AM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
Andreas Müller wrote:
> The problem itself is fixed now. There is a minor issue left: if a lowest rank is chosen the...
Katja Luther
10:30 AM Revision 1f2126f1 (taxeditor): avoid widget is disposed exception
Katja Luther
10:25 AM Revision 773fe4f3 (taxeditor): cleanup
Andreas Müller
10:18 AM Revision a9cd0534 (taxeditor): ref #9821: all sources of description should be disabled
Katja Luther
09:46 AM Revision 139dad7d (taxeditor): ref #9816: adapt matrix to possibility of more than one descr element
Katja Luther
09:45 AM Revision 2b942f17 (cdmlib): ref #9816: adapt rowWrapperDto to more than one description element
Katja Luther
09:39 AM Revision 7d4a750b (taxeditor): ref #9819: still some occurences of Namens-Editor, move to taxon editor
Katja Luther
09:15 AM feature request #9511 (New): Move specimens/individual associations for matrix into same description
This is still an open issue. Tested with my local installation. Katja Luther

10/25/2021

11:36 PM feature request #9511: Move specimens/individual associations for matrix into same description
? Andreas Müller
11:35 PM bug #9817 (Feedback): AggregationWizard: Changing the maxRank results in empty minRank
Andreas Müller
11:35 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
The problem itself is fixed now. There is a minor issue left: if a lowest rank is chosen the "Highest rank" combo sti... Andreas Müller
01:42 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
Tested for Structured DDS test:
* select highest rank "Order", select lowest rank "species"
* select highest rank...
Katja Luther
11:23 PM bug #9281 (Closed): Set basionym not available for heterotypic synonyms after drag & drop
works as expected Andreas Müller
01:14 PM bug #9281: Set basionym not available for heterotypic synonyms after drag & drop
Tested on rem_conf_am:
Created new heterotypic synonym by using right click menu, creating second heterotypic syno...
Katja Luther
11:19 PM bug #9818 (Closed): Sources not visible for disabled DescriptionElements
works as expected Andreas Müller
01:33 PM bug #9818: Sources not visible for disabled DescriptionElements
Tested on rem_conf_am Descripta prima, sources can be expanded but are not editable, so it works as expected. Katja Luther
11:14 PM bug #9819 (Feedback): Rename "Nameeditor" to "Taxon Editor" in menus
Please check that always both translations are adapted. E.g. there is a change in eu.etaxonomy.taxeditor.bulkeditor/O... Andreas Müller
01:30 PM bug #9819: Rename "Nameeditor" to "Taxon Editor" in menus
Tested in taxon navigator and bulk editor and open in ... shows "taxon editor" Katja Luther
10:57 PM bug #9815 (Closed): When removing all elements of a description, the description disappears from factual data view, but still exist
works as expected Andreas Müller
01:47 PM bug #9815: When removing all elements of a description, the description disappears from factual data view, but still exist
Tested with Descripta prima:
* create a new Factual Data Set and add new distribution
* create another new factua...
Katja Luther
10:55 PM bug #9821 (Feedback): Description sources shown for description elements should not be editable
It works for sources loaded during the session but not yet for sources created during the session.
I created a new...
Andreas Müller
01:23 PM bug #9821: Description sources shown for description elements should not be editable
Tested with Descripta prima Dall. in Descriptive DS test.
Categorical as well as quantitative data worked as expec...
Katja Luther
10:36 PM bug #9806: Clones should not be editable in factual data view and elsewhere
Should we split this ticket? Andreas Müller
01:47 PM bug #9816 (In Progress): Implement correct handling of more than one element for a character
Katja Luther
10:31 AM bug #9825 (Closed): Selection wizards for areas in mulitlanguage instances show every vocabulary twice
The selection wizard for areas for the distribution editor shows the vocabularies twice in cuba, this is a multilangu... Katja Luther
10:27 AM bug #9824 (New): [Distribution Editor] Areas in header should be sorted hierarchically
mail WB:
c) kann man den Header der Tabelle hierarchisch anordnen? Ich nahm an, das wäre die „natural“ Option in d...
Katja Luther
10:23 AM bug #9823 (New): [Distribution Editor] Unsaved changes not shown in correct column when changing areas
mail WB:
a) Ein wichtiger Bug: Wenn man die Auswahl der areas ändert, ohne vorher gespeichert zu haben, werden die...
Katja Luther
09:34 AM Revision cb993828 (cdm-dataportal): ref #9811 switching in search results to portal/taxon/{uuid}/taxonRelationshipsDTO and adapting code
Andreas Kohlbecker

10/22/2021

12:35 PM Revision e6fe76d0 (cdmlib): ref #9816: create display string for all elements of the same feature
Katja Luther
11:33 AM feature request #7675 (Feedback): Make columns with default values togglable
I do not understand the intention of this ticket, if a default value exist no exact values from the specimen should b... Katja Luther
11:17 AM bug #9815 (Resolved): When removing all elements of a description, the description disappears from factual data view, but still exist
please review. Katja Luther
11:16 AM Revision 99ba434b (taxeditor): ref #9815: when removing all elements of description, do not remove it automatically
Katja Luther
11:03 AM Revision d2b34d6b (taxeditor): avoid NPE
Katja Luther
11:02 AM Revision 7a683d4e (taxeditor): ref #9819: one file was missing
Katja Luther
10:56 AM Revision 91d72a14 (taxeditor): ref #9816: disable field for more than one description element
Katja Luther

10/21/2021

09:30 AM bug #9814 (Resolved): Advanced search webservice for area throws NPE (mexico portal)
Added the vocDto to termDto when creating the termDto because the voc representations are needed for the term search.... Katja Luther
09:29 AM Revision dfd8da23 (cdmlib): ref #9814: add vocDto to termDto
Katja Luther

10/20/2021

04:46 PM bug #9819 (Resolved): Rename "Nameeditor" to "Taxon Editor" in menus
Searched for all "Namenseditor" and "name editor" strings and replaced it by "taxon editor"/"Taxon Editor" Katja Luther
04:44 PM Revision 25302047 (taxeditor): ref #9819: rename name editor to taxon editor in menues
Katja Luther
04:40 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
This should be fixed, please review. Katja Luther
04:30 PM bug #9817 (Resolved): AggregationWizard: Changing the maxRank results in empty minRank
Applied in changeset commit:taxeditor|9f84c59541baaae91592b1870fd11d5c802d68a8. Katja Luther
04:29 PM Revision 9f84c595 (taxeditor): fix #9817: remember selected rank when update rank combo
Katja Luther
03:28 PM bug #9821 (Resolved): Description sources shown for description elements should not be editable
This should be fixed. Please review. Katja Luther
12:49 PM bug #9821 (Closed): Description sources shown for description elements should not be editable
Since #7774 sources for descriptions are shown in the details view for description elements.
However, they should no...
Andreas Müller
03:09 PM Revision 4351685c (taxeditor): ref #9821: sources of description should not be editable
Katja Luther
01:18 PM feature request #9771: Implement Cdm2Cdm for vocabularies
Note: in TaxEditor there is a first version for handling a second CdmServer at CdmServerInfo.getDevServerRemoteSource() Andreas Müller
01:11 PM task #9822 (New): Improve performance for DDS aggregation
e.g. by faster loading of data and by not reloading the full dataset after aggregation (there might be a ticket for t... Andreas Müller
11:32 AM bug #9811 (Resolved): regression through removal of `TaxonRelationshipBeanProcessor` ?
solved, see http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/search/results/taxon?ws=portal%2Ftaxo... Andreas Kohlbecker
11:22 AM Revision cb2b26b5 (cdm-dataportal): ref #9811 switching in search results to portal/taxon/{uuid}/taxonRelationshipsDTO and adapting code
Andreas Kohlbecker
11:21 AM Revision 3d73cbc2 (cdmlib): ref #9811 adding classification uuids to TaxonRelationshipsDTO
Andreas Kohlbecker
11:21 AM Revision fd07b3aa (cdmlib): avoiding NPEs in loadTreeBranch methods
Andreas Kohlbecker

10/19/2021

03:23 PM bug #9818 (Resolved): Sources not visible for disabled DescriptionElements
This should be fixed. Katja Luther
03:21 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
I checked advance search on test servers and it works again: http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm... Andreas Müller
03:19 PM bug #9806 (In Progress): Clones should not be editable in factual data view and elsewhere
Now cloned descriptions are disabled like computed descriptions. Katja Luther
03:18 PM Revision b9b4a1ec (taxeditor): ref #9806: disable cloned descriptions
Katja Luther
02:58 PM Revision 22466e2e (taxeditor): ref #9818: avoid NPE
Katja Luther
02:49 PM bug #9281 (Resolved): Set basionym not available for heterotypic synonyms after drag & drop
This should be fixed, please review. Katja Luther
02:47 PM Revision eba0b772 (taxeditor): ref #9281: setBasionym should be available after d&d - continue
Katja Luther
02:34 PM Revision 342be9a6 (taxeditor): ref #9281: setBasionym should be available after d&d
Katja Luther
02:04 PM Revision 5af7ab6e (taxeditor): ref #9818: keep collapsable elements expandable when details are disabled
Katja Luther
11:18 AM bug #9820 (New): OptionalDataException when saving character matrix
After moving all used elements to Dtos the character matrix still needs a lot of time to start and sometimes an optio... Katja Luther
10:39 AM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
Katja Luther wrote:
> Actually maybe this was the wrong ticket because the exception coming up again was not an OutO...
Andreas Müller

10/18/2021

06:39 PM Revision 22c38d41 (taxeditor): cleanup (cont.)
Andreas Müller
06:21 PM Revision 611fddf9 (taxeditor): cleanup
Andreas Müller
05:09 PM bug #8936: Improve default distribution formatting
there was a problem with the release in the master branch, some commits have been lost. this is fixed and it is now t... Andreas Kohlbecker
04:37 PM Revision 73bd997a (cdm-dataportal): Merge tag '5.27.1' into develop
tagging hotfix Andreas Kohlbecker
04:37 PM Revision e3b0407b (cdm-dataportal): Merge branch 'hotfix/5.27.1'
Andreas Kohlbecker
04:37 PM Revision ec495134 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
04:18 PM Revision 32ae53fa (cdmlib): cleanup
Andreas Müller
03:59 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
this method is only used in the TaxEditor:
~~~
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor...
Andreas Kohlbecker
02:09 PM bug #9814 (Feedback): Advanced search webservice for area throws NPE (mexico portal)
I fixed the NPE so it does not throw an exception anymore. However, we need to discuss how the TermDTO should behave.... Andreas Müller
12:02 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
This is strange, the actual method getVocRepresentation_L10n_abbreviatedLabel() is never called in cdmlib so I don't ... Andreas Müller
11:58 AM bug #9814 (Closed): Advanced search webservice for area throws NPE (mexico portal)
... Die Area-Terme in der Suche fehlen gerade komplett, das der Webservice nichts zurückliefert: https://132.248.13.8... Andreas Müller
03:07 PM bug #9819 (Closed): Rename "Nameeditor" to "Taxon Editor" in menus
follow up for #9744
Currently the "open in" context menu still uses Nameeditor.
Please also check for other occ...
Andreas Müller
02:23 PM bug #9818 (Closed): Sources not visible for disabled DescriptionElements
The sources of disabled description elements are not expandable but should. Katja Luther
02:09 PM Revision a4eb66ae (cdmlib): ref #9798 add also Spanish translation for country (label of vocabulary)
Andreas Müller
02:06 PM Revision 19252634 (cdmlib): cleanup
Andreas Müller
02:06 PM Revision d4542f66 (cdmlib): ref #9814 fix NPE in TermDto.getVocRepresentation_L10n (+..._abbreviatedLabel)
Andreas Müller
02:02 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
Actually maybe this was the wrong ticket because the exception coming up again was not an OutOfMemoryException but an... Katja Luther
01:51 PM bug #8783 (Feedback): Massive Heap consumption in server instance opening the Description-Matrix editor
Was comment 16 ("changed from Closed to In Progress") a mistake, it completely misses any explanation?
I am assumin...
Andreas Kohlbecker
12:54 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
If we reopen then we should adapt the milestone. But maybe it is better to keep this closed and create a new ticket a... Andreas Müller
12:44 PM bug #8783 (In Progress): Massive Heap consumption in server instance opening the Description-Matrix editor
Katja Luther
01:37 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
This is a regression therefore setting to 5.28 Andreas Müller
01:12 PM bug #9817 (Closed): AggregationWizard: Changing the maxRank results in empty minRank
mail AM:
wenn ich den max-Rank beim DDS Aggregationsdialog ändere wird immer der min-Rang auch gelöscht. Auch in F...
Katja Luther
01:10 PM bug #9816 (Closed): Implement correct handling of more than one element for a character
Implement correct handling in the character matrix, if two or more elements exist for one character. If one of the el... Katja Luther
12:35 PM bug #9815 (Closed): When removing all elements of a description, the description disappears from factual data view, but still exist
mail AM:
wenn ich mehrere Descriptions in eine merge im Facts View und somit eine volle und eine komplett leere üb...
Katja Luther
11:18 AM bug #398 (Worksforme): DIPTERA: Typestatus entered as Notes for NameTypes
Ich glaube dieses Ticket können wir schließen.
Keinerlei Hinweise darauf, was gemacht wurde, daher WORKSFORME
Andreas Kohlbecker
10:38 AM bug #9813 (New): Details view should be available for literature (and default) descriptions in character matrix
this is a subticket #9799 but with highest priority as adding sources to literature descriptions is essential functi... Andreas Müller

10/15/2021

07:27 PM feature request #6387 (Closed): [Rule] Rank rule for CultivarPlantNames
Added a level 2 rule that checks if cultivar (ICNCP) names have a cultivar rank.
Of course there could be much mor...
Andreas Müller
07:25 PM Revision 64254a55 (cdmlib): ref 6387 add some first rules for rank<->code test (cont.)
Andreas Müller
07:10 PM Revision a01d2bd1 (cdmlib): ref 6387 add some first rules for rank<->code test
Andreas Müller
07:06 PM Revision 7828c44e (cdmlib): cleanup
Andreas Müller
05:55 PM bug #9785 (In Progress): Update script for missing unit_ids (matrix)
The above update should run with error recovery to avoid a break in update if the SQL fails (especially for non-MySQL) Andreas Müller
05:53 PM bug #9785: Update script for missing unit_ids (matrix)
Some search SQL:
~~~sql
SELECT deb.id, fe.id, fe.titleCache -- , COUNT(*) AS n
FROM DescriptionElementBase deb...
Andreas Müller
05:52 PM bug #9785: Update script for missing unit_ids (matrix)
An Update for MySQL:
~~~
UPDATE DescriptionElementBase deb LEFT OUTER JOIN DefinedTermBase fe ON fe.id = deb.feat...
Andreas Müller
04:14 PM bug #9477 (Closed): New ordered terms do not have correct order index
Andreas Müller
04:10 PM feature request #8979 (Closed): Prevent misuse of field initial for personal names
Andreas Müller
12:05 PM feature request #8979: Prevent misuse of field initial for personal names
In Vaadin perfectly implemented there 100%, but did not check the TaxEditor if it is there relevant. Wolf-Henning Kusber
04:09 PM task #9308 (Closed): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Andreas Müller
11:33 AM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Task is perfectly implemented, ticket can be closed. Wolf-Henning Kusber
04:06 PM bug #8936: Improve default distribution formatting
It looks item suffix is currently not yet handled correctly in Drupal Code.
Example from mexico flora: https://13...
Andreas Müller
12:17 PM bug #9812 (Closed): Display of scientific name in the list-view of Vaadin
As of 15 Oct 2021 scientific names (Vaadin release system) are displayed mainly without blanks between genus, species... Wolf-Henning Kusber
11:59 AM feature request #7640 (Closed): Update ISO country names where necessary
Andreas Müller
11:49 AM feature request #7640: Update ISO country names where necessary
I am happy with the implementation, short names and it is clear which country is meant. Tested it in Vaadin, release ... Wolf-Henning Kusber

10/13/2021

03:22 PM bug #9797 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
new ticket for the open issue #9811 Andreas Kohlbecker
03:22 PM bug #9811 (Closed): regression through removal of `TaxonRelationshipBeanProcessor` ?
It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture502-1.pn...
Andreas Kohlbecker

10/12/2021

05:45 PM task #9123 (Closed): Fix BigDecimal algebra in aggregation algorithms
Moved polytomous key handling to new ticket #9810 Andreas Müller
05:35 PM task #9810 (New): Test if BigDecimal algebra is correct in PolytomousKey algorithms
copied from #9123 and #8978
Aggregation is checked and fixed in the meanwhile (#9123)
Andreas Müller
05:31 PM feature request #9798 (Closed): Import Spanish representations for countries
Andreas Müller
04:02 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture143-1.pn...
Andreas Kohlbecker
02:25 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
There are still problems with loading MAN, e.g. https://europlusmed.org/cdm_dataportal/search/results/taxon?ws=portal... Andreas Müller
02:52 PM Revision 29d0b0f6 (cdmlib-apps): some upgrade for BgbmInstancesUpdater
Andreas Müller
02:37 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
Andreas Kohlbecker
02:30 PM bug #9808 (Resolved): option to disable ssl/tsl certificate validation of the cdm webserver
Applied in changeset commit:cdm-dataportal|91313ab4c0d34ddd9d9c745e268b16c4eefe234b. Andreas Kohlbecker
02:29 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
in situations when a self signed certificate is being used with the cdmserver it is needed to disable certificate val... Andreas Kohlbecker
02:37 PM feature request #9786 (Closed): Implement tags CY and fix PY handling for RIS import
This should work as tests exist. If there are open issues we should add them to #9809 Andreas Müller
02:35 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
Generally this works. However, there are a couple of open issues handled in #9809. Andreas Müller
02:34 PM feature request #9809: Implement further tags for RIS reference import
NaK:
Nur bei Book Chapters funktioniert der Import nur teilweise, dafür muss man ja das Buch separat anlegen und d...
Andreas Müller
02:31 PM feature request #9809 (New): Implement further tags for RIS reference import
in #6636 and #9786 the most important tags for RIS import have been implemented. However, there are a couple of more ... Andreas Müller
02:31 PM Revision 17ed1083 (cdm-dataportal): Merge tag '5.27.1' into develop
tagging hfx release Andreas Kohlbecker
02:31 PM Revision 827c80d5 (cdm-dataportal): Merge branch 'hotfix/5.27.1'
Andreas Kohlbecker
02:31 PM Revision 2415b2e3 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
02:30 PM Revision 91313ab4 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
10:27 AM Revision 6b34400c (cdmlib): minor and cleanup
Andreas Müller

10/11/2021

09:55 PM feature request #6818: Default Image Viewer: setting to enable display of 'Media Representations'
According to commit this was fixed in 4.9 Andreas Müller
09:49 PM bug #7979: Registration date and time, display
Can we adapt milestone or remove it? Andreas Müller
09:46 PM bug #4721 (Feedback): RestServices for list methods return error when index is out of range
Is this still an open issue? The above link seems to return a correct empty list now. Andreas Müller
09:10 PM bug #3635: Protologue media should also be displayed when mime type is missing
is this still an open issue? Andreas Müller
09:08 PM bug #3511: errors are not cleared after reloading the configuration
is this still an open issue? Andreas Müller
08:52 PM bug #2592 (Worksforme): InvalidDataAccessApiUsageException when saving description scope
I could save a scope for a description now so I guess this issue is solved in the meanwhile. Andreas Müller
08:15 PM bug #5484 (Worksforme): Connecting to local H2 via local Mgd throws NPE in CdmServiceCacher
I cannot reproduce therefore close as worksforme Andreas Müller
08:14 PM bug #5485 (Duplicate): h2 database connection fails if datasource view is open
This is either fixed already or will be fixed once #9742 is fixed. I tested with a workaround using AUTO_SERVER=TRUE Andreas Müller
08:01 PM feature request #9771 (In Progress): Implement Cdm2Cdm for vocabularies
Andreas Müller
05:05 PM bug #9807: Matrix should not collapse after aggregation
AM 2021-10-1:
... Wir müssten also entweder doch herausfinden, woran es liegt, dass diese zusätzlichen Knoten ents...
Andreas Müller
04:57 PM bug #9807 (Closed): Matrix should not collapse after aggregation
As the refresh after aggregation lead to row duplications (of taxa and maybe others) it was temporarily implemented i... Andreas Müller
04:37 PM feature request #8706 (Closed): taxeditor error report with timestamps
I guess we can close this ticket. Timestamping generally works. Open new ticket if there are open issues left. Andreas Müller
04:34 PM feature request #8467 (Closed): Save a "snapshot" of the SpecimenDescriptions used for aggregation
This for me seems to be fixed. Open issue on visibility of clones moved to new ticket #9806 Andreas Müller
04:32 PM bug #9806: Clones should not be editable in factual data view and elsewhere
AM: (2021-10-7)
Descriptions Clones, die an Specimens oder auch Taxa hängen sind derzeit noch normal bearbeitbar.
...
Andreas Müller
04:31 PM bug #9806 (Closed): Clones should not be editable in factual data view and elsewhere
copied from #8467:
Currently only aggregated data are not editable (depending on configuration). Also cloned data ...
Andreas Müller
04:04 PM feature request #7981 (Closed): Add configuration UI for matrix description aggregation
I created a ticket for old and new open issues: #9805 Andreas Müller
04:03 PM feature request #9805 (New): Open issues for DDS aggregation dialogue
copied from #7981
- ~~aggregating full dataset does not work~~ (#9803)
- ~~matrix should not collapse after aggre...
Andreas Müller
03:30 PM feature request #7980 (Closed): Enhance matrix description aggregation
Andreas Müller
03:27 PM feature request #7980: Enhance matrix description aggregation
open issues moved to #9804 Andreas Müller
03:27 PM feature request #9804 (New): Further enhance description aggregation
copied from #7980
- consider default values during aggregation
- deal with outliers etc.
- improve error and ...
Andreas Müller
02:37 PM Revision 4fdc7952 (cdm-server): Merge branch 'release/5.27.0' into develop
jenkins
02:37 PM Revision ee86969f (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
02:36 PM Revision 0be21ca1 (cdm-server): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:36 PM Revision cc117ebd (cdm-webapp): Merge branch 'release/5.27.0' into develop
jenkins
02:36 PM Revision 4611dabe (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
02:35 PM Revision 1c9fea82 (cdm-webapp): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:35 PM Revision 2971458c (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.27.0
jenkins
02:33 PM feature request #9795 (Closed): Add literature descriptions to matrix aggregation
Andreas Müller
02:32 PM bug #9803: Aggregating full dataset does not work
Related to this I found that there is redundancy in the code. This lead to a failing fix for the rank handling as it ... Andreas Müller
12:53 PM bug #9803 (Closed): Aggregating full dataset does not work
Choosing "Aggregate all taxa of the descriptive datase" currently does not work.
This is because the dataset varia...
Andreas Müller
02:10 PM Revision 17e0ac1e (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
02:09 PM Revision 7bd11533 (taxeditor): Merge branch 'release/5.27.0' into develop
jenkins
02:09 PM Revision c89621ab (taxeditor): Merge branch 'release/5.27.0'
jenkins
02:07 PM Revision 9a47de32 (cdm-dataportal): Merge branch 'release/5.27.0' into develop
jenkins
02:07 PM Revision 1032dd43 (cdm-dataportal): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:06 PM Revision 0780d58d (cdm-vaadin): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:06 PM Revision 44c4fa25 (cdm-dataportal): release-preparation: production level css
jenkins
02:06 PM Revision e8da55e7 (cdm-vaadin): jenkins bumping cdmlib.version to 5.27.0
jenkins
02:06 PM Revision 0e3b1877 (cdmlib): Updating develop poms back to pre merge state
jenkins
02:06 PM Revision 295c852f (cdmlib): Merge branch 'master' into develop
jenkins
02:06 PM Revision afb06063 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
02:06 PM Revision dab26056 (cdmlib): Merge branch 'release/5.27.0'
jenkins
01:47 PM Revision 51bd4576 (cdmlib): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
01:41 PM Revision 575a6bd5 (cdmlib-apps): ref #9778 adapt redlist import to new existing ranks lusus and subproles
Andreas Müller
01:40 PM Revision dab55660 (cdmlib-apps): ref #9780 fix grex handling in some scripts
Andreas Müller
01:38 PM Revision ae1ae34c (cdmlib-apps): remove JvmLimitsException handling form EuroMedDistributionAggregationActivator
Andreas Müller
01:03 PM Revision 48009893 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.27.0-SNAPSHOT
jenkins
01:03 PM Revision a95975ed (cdm-webapp): updating poms for 5.28.0-SNAPSHOT development
jenkins
01:03 PM Revision 9af719d8 (cdm-webapp): updating poms for 5.27.0 branch with snapshot versions
jenkins
01:03 PM Revision 01d670ed (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.28.0-SNAPSHOT
jenkins
01:01 PM Revision 70a62925 (cdm-vaadin): jenkins bumping cdmlib.version to 5.27.0-SNAPSHOT
jenkins
01:01 PM Revision 7cf401e1 (taxeditor): Updated version in pom / project files to taxeditor version : 5.28.0-SNAPSHOT and cdmlib version : 5.28.0-SNAPSHOT
jenkins
01:01 PM Revision 47020ac1 (cdm-vaadin): updating poms for 5.28.0-SNAPSHOT development
jenkins
01:01 PM Revision 104bacb0 (cdm-vaadin): updating poms for 5.27.0 branch with snapshot versions
jenkins
01:01 PM Revision 2be1f4fa (taxeditor): Updated version in pom / project files to taxeditor version : 5.27.0 and cdmlib version : 5.27.0
jenkins
01:01 PM Revision 09f6d172 (cdm-vaadin): jenkins bumping cdmlib.version to 5.28.0-SNAPSHOT
jenkins
01:01 PM Revision 9bc9587a (cdm-server): updating poms for 5.28.0-SNAPSHOT development
jenkins
01:00 PM Revision f2fca10a (cdm-dataportal): updating poms for 5.28.0-SNAPSHOT development
jenkins
12:57 PM Revision 206c20c1 (cdmlib): updating poms for 5.28.0-SNAPSHOT development
jenkins
12:55 PM Revision bbcd0abb (taxeditor): ref #9803 better handling of redundant minMaxRank and geoFilter handling in aggregation wizard
Andreas Müller
11:24 AM bug #9802 (New): Label for min=max does not unify values in Matrix QuantitativeData label provider
e.g. I get [987-987] instead.
Also the unit is missing.
In general we should try to unify the matrix label with...
Andreas Müller

10/08/2021

09:43 PM Revision f717518e (cdmlib): remove deprecated method
Andreas Müller
09:39 PM Revision 3c420001 (cdmlib): ref #9801, ref #7980, ref #8871 remove aggregated source descriptions from aggregation and fix persistence issues
Andreas Müller
09:18 PM bug #9801 (New): Orphan removal does not work correctly for CdmLinkSource
as part of OriginalSourceBase. As it is 1:1 the mapping should be done the other way round to make orphan removal wor... Andreas Müller
05:57 PM Revision c50ece59 (cdmlib): cleanup
Andreas Müller
04:05 PM Revision 1ac9cae7 (taxeditor): ref #7981: avoid NPE
Katja Luther
03:56 PM Revision a9b7ea5d (cdmlib): ref #9772 add deproxy to collector title computation
Andreas Müller
01:40 PM Revision 80bbeb1b (cdmlib): change line number for debugging
Andreas Müller
01:31 PM Revision 541ae6bc (cdmlib): ref #7980 fix concurrent modification exception
Andreas Müller
01:15 PM Revision e7e11b99 (taxeditor): set default for unpublished taxa to true
Katja Luther
01:06 PM Revision f11b2271 (taxeditor): set default sel in wizard to values in configurator
Katja Luther
01:04 PM Revision 843fbe64 (cdmlib): cleanup
Andreas Müller
01:04 PM Revision 7fee6b88 (cdmlib): ref #7980 fix NoSuchElement exception (cont.)
Andreas Müller
11:48 AM Revision 2374e385 (taxeditor): ref #7981: select configuration default values
Katja Luther
11:07 AM Revision 4ca90889 (cdmlib): ref #9772: adapt collectorstring, use collectorTitleCache
Katja Luther
10:42 AM Revision 305b0475 (taxeditor): statistical value details view should be disabled for computed desc
Katja Luther
10:30 AM Revision ef1a6397 (cdmlib): ref #7980 fix NoSuchElement exception
Andreas Müller
12:02 AM Revision edfed83c (taxeditor): cleanup
Andreas Müller

10/07/2021

11:57 PM Revision c978affc (taxeditor): cleanup
Andreas Müller
11:45 PM Revision a1417825 (taxeditor): cleanup
Andreas Müller
10:18 PM Revision 3194d52a (cdmlib): update Datasource script
Andreas Müller
08:44 PM Revision c0228744 (taxeditor): ref #7981 adapt label for aggregated taxa/subtrees
Andreas Müller
07:42 PM Revision 1a96d01d (cdmlib): ref #7980, ref #8871 improve error handling and verification in aggregations
Andreas Müller
06:32 PM Revision 293b1494 (cdmlib): cleanup, javadoc and minor
Andreas Müller
06:31 PM Revision bdd1b0c7 (cdmlib): ref #7980 fix aggregation for titleCache of reused descriptions
Andreas Müller
06:29 PM Revision 6ce5c551 (cdmlib): ref #7980 fix aggregation for measurement units (still open are not equal units)
Andreas Müller
06:26 PM Revision 74ccd9f4 (cdmlib): adapt dummy measurement unit to meter in test dataset
Andreas Müller
05:18 PM Revision cdcad85a (taxeditor): ref #7981: read aggSourceMode from configurator in aggregation wizard (cont. II)
Andreas Müller
04:20 PM Revision 6b6b71cf (cdmlib): ref #7980 fix tests for aggregation source mode
Andreas Müller
03:58 PM Revision 469b4d69 (taxeditor): ref #7981: read aggSourceMode from configurator in aggregation wizard (cont.)
Andreas Müller
03:56 PM Revision f677247f (cdmlib): ref #7981, ref #7980, ref #8871 explicitly defined source modes for aggregation configurators
Andreas Müller
03:55 PM Revision d98a1622 (cdmlib): javadoc
Andreas Müller
03:25 PM Revision a76ae357 (taxeditor): ref #7981: read aggSourceMode from configurator in aggregation wizard
Andreas Müller
03:24 PM Revision 583471b3 (taxeditor): cleanup
Andreas Müller
01:07 PM Revision b7ad4bb2 (cdmlib): some renaming
Andreas Müller
01:02 PM Revision 6163ee20 (cdmlib): ref #8871, ref #7980 handle aggregation source mode TAXON for toParent
Andreas Müller
11:04 AM Revision 82b18118 (cdmlib): ref #8871, ref #7980 handle aggregation source modes for SDD aggregation
Andreas Müller
10:26 AM Revision 472080b4 (taxeditor): ref #9772: fix doubled menu items
Katja Luther
10:04 AM Revision 7e1619ea (cdmlib): ref #8871, ref #7980 adapt available source modes for DDS aggregation
Andreas Müller
09:47 AM Revision 67c1a4e3 (taxeditor): sort taxon nodes in taxon filter of DDS editor
Katja Luther
02:10 AM Revision a4001175 (cdmlib): ref #8871 try to fix failing aggregation tests (cont.)
Andreas Müller
01:50 AM feature request #9795 (Resolved): Add literature descriptions to matrix aggregation
this is probably fully resolved Andreas Müller
01:49 AM task #8871 (In Progress): Remaining issues to unify description aggregation methods
Andreas Müller
01:47 AM Revision bfbf1c9c (cdmlib): cleanup
Andreas Müller
01:46 AM Revision 67c26aa8 (cdmlib): ref #8871 try to fix failing aggregation tests
Andreas Müller
01:40 AM Revision 4b70788c (cdmlib): ref #8871, ref #9331 fix DescriptionElementSource.clone , e.g. for DistributionAggregation
Andreas Müller
01:33 AM Revision f600798d (cdmlib): cleanup
Andreas Müller

10/06/2021

10:13 PM Revision 98623528 (cdmlib): cleanup and minor
Andreas Müller
06:28 PM Revision 5f20c74a (cdmlib): ref #7980 delete not needed descriptions after aggregation
Andreas Müller
06:25 PM Revision 569f15d4 (cdmlib): fix problem with strange DefinedTermBase_InverseRepresentation_AUD1 metadata
Andreas Müller
06:24 PM Revision 0e0fe1fb (cdmlib): cleanup and minor
Andreas Müller
06:21 PM Revision fe503ae0 (cdmlib): remove handling for not thrown exception JvmLimitsExceed
Andreas Müller
02:58 PM Revision 505cd4db (taxeditor): show all description elements in factual data view of taxa
Katja Luther
02:31 PM Revision ac67f386 (cdmlib): ref #7980 minor changes to aggregation tests
Andreas Müller
02:31 PM Revision 37cdc012 (cdmlib): ref #7980 reduce minFreeHeap for aggregation (cont.)
Andreas Müller
02:30 PM Revision c1c6c66e (cdmlib): cleanup
Andreas Müller
02:16 PM Revision 4296d7cb (cdmlib): ref #7980 reduce minFreeHeap for aggregation
Andreas Müller
01:40 PM Revision 120c4ab8 (taxeditor): default for availableForTaxa and availableForSpecimen set to true
Katja Luther
01:34 PM Revision c549e4d6 (taxeditor): add available for parts to character details
Katja Luther
12:08 PM Revision e8edefb2 (cdmlib): cleanup
Andreas Müller
12:08 PM Revision 5d1ef7fc (cdmlib): ref #9510 adapt specimens holding description label (cont. II)
Andreas Müller
11:31 AM bug #9510 (In Progress): Improve label for descriptions created via DDS matrix
Andreas Müller
11:29 AM Revision 7f25cd4e (cdmlib): ref #9510 adapt specimens holding description label (cont.)
Andreas Müller
11:28 AM Revision 24190230 (cdmlib): cleanup
Andreas Müller
11:26 AM feature request #9511 (Resolved): Move specimens/individual associations for matrix into same description
This seems to be fixed in the meanwhile. Can you please double check and if true close the ticket?
If you find the...
Andreas Müller
11:06 AM Revision a5c8139e (cdmlib): cleanup and explicit title for IndividualsAssociation taxon descriptions
Andreas Müller
10:30 AM Revision a1a25627 (cdmlib): minor
Andreas Müller
09:26 AM bug #6523: Correct display of misspellings in synonymy
another example case from the carypophyllales portal:
----
ich habe eben gesehen, dass die misspellings im Po...
Andreas Kohlbecker

10/05/2021

11:54 PM Revision 310956ec (cdmlib): fix compile error and cleanup (cont.)
Andreas Müller
11:50 PM Revision b78fe281 (cdmlib): fix compile error and cleanup
Andreas Müller
11:36 PM Revision 12da0940 (cdmlib): cleanup
Andreas Müller
11:30 PM Revision 09b7d505 (cdmlib): ref #7980, ref #8871, ref #9795 fix source handling in StructuredDescriptionAggregation
Andreas Müller
03:09 PM Revision 9b4330d1 (cdmlib): revert add supresswarning annotation
Katja Luther
02:39 PM Revision 06367522 (cdmlib): cleanup
Andreas Müller
02:39 PM Revision 8d87730d (cdmlib): fix compile error
Andreas Müller
02:01 PM Revision 44900eab (cdmlib): remove cloneNotSupportedException from DescriptionElementBase and some cleanup
Andreas Müller
01:55 PM Revision 802b31bc (cdm-dataportal): avoiding usage of deprecated property determinedNames
Andreas Kohlbecker
01:46 PM Revision eb1d334b (cdmlib): code cleaning - continue
Katja Luther
01:35 PM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Can you please also leave a note which model objects have been replaced by this ticket?
>
...
Katja Luther
01:21 PM bug #9772 (Resolved): Improve DTO usage for character matrix
Code cleaning done for TaxonNodeService/Dao and DescriptiveDatasetService. Katja Luther
10:54 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Please check also if code is clean. E.g. I found DescriptiveDatasetService.getDescriptiveDat...
Katja Luther
08:45 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Same in TaxonNodeServiceImpl.getTaxonNodeDtos().
>
> By the way I wonder if all these HQL...
Katja Luther
01:28 PM Revision c6890f7a (cdmlib): code cleaning - continue
Katja Luther
01:17 PM Revision b3c135e2 (cdmlib): code cleaning
Katja Luther
01:15 PM Revision 128317f4 (cdmlib): code cleaning
Katja Luther
10:53 AM Revision 3ed10837 (cdmlib): ref #9772: code cleaning - move hql code to persistence
Katja Luther
09:57 AM Revision c61c9db0 (cdmlib): code cleaning, move hql queries to dao
Katja Luther
09:40 AM bug #9800 (In Progress): Open issues for character matrix
* implement the details view again to be able to edit some more advanced data like the modifiers. This worked in earl... Katja Luther
09:40 AM bug #9799 (New): Details view should be available for character matrix
Implement the details view again to be able to edit some more advanced data like the modifiers. This worked in earlie... Katja Luther
09:30 AM bug #9073 (Worksforme): Configuring the matrix view throws HTTP invoker exception
could not reproduce this anymore, so close this ticket. Katja Luther
09:20 AM bug #8243: Cdm Cache uses a lot of disk space
We should have a look on this with the new implementation because the matrix worked with descriptions and descriptive... Katja Luther
08:56 AM bug #9074: Specimen missing a collector + n° and missing a collection identifier (Barcode, Accession number) not identifiable in descriptive Matrix
With the actual implementation the "collector & nr" field is always filled, if a field unit with collector and collec... Katja Luther

10/04/2021

04:34 PM bug #9772: Improve DTO usage for character matrix
Same in TaxonNodeServiceImpl.getTaxonNodeDtos().
By the way I wonder if all these HQL statements are necessary. Ha...
Andreas Müller
04:23 PM bug #9772: Improve DTO usage for character matrix
Please check also if code is clean. E.g. I found DescriptiveDatasetService.getDescriptiveDataSetDtoByUuid() which inc... Andreas Müller
04:01 PM bug #9772: Improve DTO usage for character matrix
Can you also check for other open matrix tickets and add the new tag "matrix" to them so we can check for all open ma... Andreas Müller
03:52 PM bug #9772: Improve DTO usage for character matrix
Generally we can close this ticket. Andreas Müller
03:52 PM bug #9772: Improve DTO usage for character matrix
Can you please also leave a note which model objects have been replaced by this ticket?
And can you check the (new...
Andreas Müller
03:50 PM bug #9772: Improve DTO usage for character matrix
This generally seems to work now as expected.
I guess we need to create a couple of follow-up tickets. I could thi...
Andreas Müller
02:24 PM bug #9772: Improve DTO usage for character matrix
Some more tests (with Lactucinae):
found two issues, both are already fixed:
* avoid NPE for quantitative data ...
Katja Luther
11:33 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Adding a new literature to a taxon does show the taxon row 2x if a specimen description for ...
Andreas Müller
11:30 AM bug #9772 (Feedback): Improve DTO usage for character matrix
Adding a new literature to a taxon does show the taxon row 2x if a specimen description for this taxon existed before... Andreas Müller
04:25 PM Revision 4deab588 (cdmlib): cleanup
Andreas Müller
03:35 PM bug #9796 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
the changes seem to solve the initialization problems without noticeable side-effects.
Andreas Kohlbecker
02:53 PM Revision cbd2db51 (taxeditor): ref #7981: fix enable/disable in aggregation wizard
Katja Luther
02:44 PM Revision d10e83d5 (cdmlib): ref #9772 cleanup SpecimenOrObservationBaseDTO (cont.)
Andreas Müller
02:39 PM Revision 20baf421 (cdmlib): cleanup SpecimenOrObservationBaseDTO
Andreas Müller
02:12 PM Revision 0b54e3e1 (cdmlib): ref #7980, ref #8871 reuse description items for DDS aggregation
Andreas Müller
02:09 PM Revision 22f2a9b8 (cdmlib): cleanup
Andreas Müller
02:08 PM Revision 44ddcdb3 (taxeditor): ref #9772: check for changes before start aggregation
Katja Luther
02:06 PM Revision 11baea18 (cdmlib): ref #7980 remove multiple description items for same feature from reused description
Andreas Müller
01:52 PM bug #9797 (Resolved): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
Andreas Kohlbecker
01:52 PM Revision c7378b10 (cdmlib): ref #9797 introducing TaxonAutoInitializer to init taxonNodes and adapting init strategies
Andreas Kohlbecker
01:52 PM Revision 6f10f4a4 (cdmlib): ref #9797 comment on UNUSED TaxonNodeAutoInitializer
Andreas Kohlbecker
01:52 PM Revision 19732d4e (cdmlib): ref #9797 disabling and deprecating TaxonRelationshipBeanProcessor
Andreas Kohlbecker
01:50 PM Revision 4bb63f91 (cdmlib): ref #9797 better trace logging for bean initialization
Andreas Kohlbecker
01:50 PM Revision 7eb8206e (cdmlib): ref #9797 Taxon.isMisapplicationOnly() as transient method
Andreas Kohlbecker
12:54 PM Revision 64e5bc9f (cdmlib): ref #9772: add collectors string with collector and collectorsnumber
Katja Luther
12:25 PM Revision 337fab7d (taxeditor): ref #9772: fix collector and number
Katja Luther
12:23 PM Revision e0bfdfcc (cdmlib): ref #9772: add collectors string with collector and collectorsnumber
Katja Luther
09:28 AM Revision bf9c6f71 (cdmlib): ref #7981: fix taxonnodeDto taxon titlecache
Katja Luther
 

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