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From 09/23/2021 to 10/22/2021

10/22/2021

12:35 PM Revision e6fe76d0 (cdmlib): ref #9816: create display string for all elements of the same feature
Katja Luther
11:33 AM feature request #7675 (Feedback): Make columns with default values togglable
I do not understand the intention of this ticket, if a default value exist no exact values from the specimen should b... Katja Luther
11:17 AM bug #9815 (Resolved): When removing all elements of a description, the description disappears from factual data view, but still exist
please review. Katja Luther
11:16 AM Revision 99ba434b (taxeditor): ref #9815: when removing all elements of description, do not remove it automatically
Katja Luther
11:03 AM Revision d2b34d6b (taxeditor): avoid NPE
Katja Luther
11:02 AM Revision 7a683d4e (taxeditor): ref #9819: one file was missing
Katja Luther
10:56 AM Revision 91d72a14 (taxeditor): ref #9816: disable field for more than one description element
Katja Luther

10/21/2021

09:30 AM bug #9814 (Resolved): Advanced search webservice for area throws NPE (mexico portal)
Added the vocDto to termDto when creating the termDto because the voc representations are needed for the term search.... Katja Luther
09:29 AM Revision dfd8da23 (cdmlib): ref #9814: add vocDto to termDto
Katja Luther

10/20/2021

04:46 PM bug #9819 (Resolved): Rename "Nameeditor" to "Taxon Editor" in menus
Searched for all "Namenseditor" and "name editor" strings and replaced it by "taxon editor"/"Taxon Editor" Katja Luther
04:44 PM Revision 25302047 (taxeditor): ref #9819: rename name editor to taxon editor in menues
Katja Luther
04:40 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
This should be fixed, please review. Katja Luther
04:30 PM bug #9817 (Resolved): AggregationWizard: Changing the maxRank results in empty minRank
Applied in changeset commit:taxeditor|9f84c59541baaae91592b1870fd11d5c802d68a8. Katja Luther
04:29 PM Revision 9f84c595 (taxeditor): fix #9817: remember selected rank when update rank combo
Katja Luther
03:28 PM bug #9821 (Resolved): Description sources shown for description elements should not be editable
This should be fixed. Please review. Katja Luther
12:49 PM bug #9821 (Closed): Description sources shown for description elements should not be editable
Since #7774 sources for descriptions are shown in the details view for description elements.
However, they should no...
Andreas Müller
03:09 PM Revision 4351685c (taxeditor): ref #9821: sources of description should not be editable
Katja Luther
01:18 PM feature request #9771: Implement Cdm2Cdm for vocabularies
Note: in TaxEditor there is a first version for handling a second CdmServer at CdmServerInfo.getDevServerRemoteSource() Andreas Müller
01:11 PM task #9822 (New): Improve performance for DDS aggregation
e.g. by faster loading of data and by not reloading the full dataset after aggregation (there might be a ticket for t... Andreas Müller
11:32 AM bug #9811 (Resolved): regression through removal of `TaxonRelationshipBeanProcessor` ?
solved, see http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/search/results/taxon?ws=portal%2Ftaxo... Andreas Kohlbecker
11:22 AM Revision cb2b26b5 (cdm-dataportal): ref #9811 switching in search results to portal/taxon/{uuid}/taxonRelationshipsDTO and adapting code
Andreas Kohlbecker
11:21 AM Revision 3d73cbc2 (cdmlib): ref #9811 adding classification uuids to TaxonRelationshipsDTO
Andreas Kohlbecker
11:21 AM Revision fd07b3aa (cdmlib): avoiding NPEs in loadTreeBranch methods
Andreas Kohlbecker

10/19/2021

03:23 PM bug #9818 (Resolved): Sources not visible for disabled DescriptionElements
This should be fixed. Katja Luther
03:21 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
I checked advance search on test servers and it works again: http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm... Andreas Müller
03:19 PM bug #9806 (In Progress): Clones should not be editable in factual data view and elsewhere
Now cloned descriptions are disabled like computed descriptions. Katja Luther
03:18 PM Revision b9b4a1ec (taxeditor): ref #9806: disable cloned descriptions
Katja Luther
02:58 PM Revision 22466e2e (taxeditor): ref #9818: avoid NPE
Katja Luther
02:49 PM bug #9281 (Resolved): Set basionym not available for heterotypic synonyms after drag & drop
This should be fixed, please review. Katja Luther
02:47 PM Revision eba0b772 (taxeditor): ref #9281: setBasionym should be available after d&d - continue
Katja Luther
02:34 PM Revision 342be9a6 (taxeditor): ref #9281: setBasionym should be available after d&d
Katja Luther
02:04 PM Revision 5af7ab6e (taxeditor): ref #9818: keep collapsable elements expandable when details are disabled
Katja Luther
11:18 AM bug #9820 (New): OptionalDataException when saving character matrix
After moving all used elements to Dtos the character matrix still needs a lot of time to start and sometimes an optio... Katja Luther
10:39 AM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
Katja Luther wrote:
> Actually maybe this was the wrong ticket because the exception coming up again was not an OutO...
Andreas Müller

10/18/2021

06:39 PM Revision 22c38d41 (taxeditor): cleanup (cont.)
Andreas Müller
06:21 PM Revision 611fddf9 (taxeditor): cleanup
Andreas Müller
05:09 PM bug #8936: Improve default distribution formatting
there was a problem with the release in the master branch, some commits have been lost. this is fixed and it is now t... Andreas Kohlbecker
04:37 PM Revision 73bd997a (cdm-dataportal): Merge tag '5.27.1' into develop
tagging hotfix Andreas Kohlbecker
04:37 PM Revision e3b0407b (cdm-dataportal): Merge branch 'hotfix/5.27.1'
Andreas Kohlbecker
04:37 PM Revision ec495134 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
04:18 PM Revision 32ae53fa (cdmlib): cleanup
Andreas Müller
03:59 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
this method is only used in the TaxEditor:
~~~
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor...
Andreas Kohlbecker
02:09 PM bug #9814 (Feedback): Advanced search webservice for area throws NPE (mexico portal)
I fixed the NPE so it does not throw an exception anymore. However, we need to discuss how the TermDTO should behave.... Andreas Müller
12:02 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
This is strange, the actual method getVocRepresentation_L10n_abbreviatedLabel() is never called in cdmlib so I don't ... Andreas Müller
11:58 AM bug #9814 (Closed): Advanced search webservice for area throws NPE (mexico portal)
... Die Area-Terme in der Suche fehlen gerade komplett, das der Webservice nichts zurückliefert: https://132.248.13.8... Andreas Müller
03:07 PM bug #9819 (Closed): Rename "Nameeditor" to "Taxon Editor" in menus
follow up for #9744
Currently the "open in" context menu still uses Nameeditor.
Please also check for other occ...
Andreas Müller
02:23 PM bug #9818 (Closed): Sources not visible for disabled DescriptionElements
The sources of disabled description elements are not expandable but should. Katja Luther
02:09 PM Revision a4eb66ae (cdmlib): ref #9798 add also Spanish translation for country (label of vocabulary)
Andreas Müller
02:06 PM Revision 19252634 (cdmlib): cleanup
Andreas Müller
02:06 PM Revision d4542f66 (cdmlib): ref #9814 fix NPE in TermDto.getVocRepresentation_L10n (+..._abbreviatedLabel)
Andreas Müller
02:02 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
Actually maybe this was the wrong ticket because the exception coming up again was not an OutOfMemoryException but an... Katja Luther
01:51 PM bug #8783 (Feedback): Massive Heap consumption in server instance opening the Description-Matrix editor
Was comment 16 ("changed from Closed to In Progress") a mistake, it completely misses any explanation?
I am assumin...
Andreas Kohlbecker
12:54 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
If we reopen then we should adapt the milestone. But maybe it is better to keep this closed and create a new ticket a... Andreas Müller
12:44 PM bug #8783 (In Progress): Massive Heap consumption in server instance opening the Description-Matrix editor
Katja Luther
01:37 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
This is a regression therefore setting to 5.28 Andreas Müller
01:12 PM bug #9817 (Closed): AggregationWizard: Changing the maxRank results in empty minRank
mail AM:
wenn ich den max-Rank beim DDS Aggregationsdialog ändere wird immer der min-Rang auch gelöscht. Auch in F...
Katja Luther
01:10 PM bug #9816 (Closed): Implement correct handling of more than one element for a character
Implement correct handling in the character matrix, if two or more elements exist for one character. If one of the el... Katja Luther
12:35 PM bug #9815 (Closed): When removing all elements of a description, the description disappears from factual data view, but still exist
mail AM:
wenn ich mehrere Descriptions in eine merge im Facts View und somit eine volle und eine komplett leere üb...
Katja Luther
11:18 AM bug #398 (Worksforme): DIPTERA: Typestatus entered as Notes for NameTypes
Ich glaube dieses Ticket können wir schließen.
Keinerlei Hinweise darauf, was gemacht wurde, daher WORKSFORME
Andreas Kohlbecker
10:38 AM bug #9813 (New): Details view should be available for literature (and default) descriptions in character matrix
this is a subticket #9799 but with highest priority as adding sources to literature descriptions is essential functi... Andreas Müller

10/15/2021

07:27 PM feature request #6387 (Closed): [Rule] Rank rule for CultivarPlantNames
Added a level 2 rule that checks if cultivar (ICNCP) names have a cultivar rank.
Of course there could be much mor...
Andreas Müller
07:25 PM Revision 64254a55 (cdmlib): ref 6387 add some first rules for rank<->code test (cont.)
Andreas Müller
07:10 PM Revision a01d2bd1 (cdmlib): ref 6387 add some first rules for rank<->code test
Andreas Müller
07:06 PM Revision 7828c44e (cdmlib): cleanup
Andreas Müller
05:55 PM bug #9785 (In Progress): Update script for missing unit_ids (matrix)
The above update should run with error recovery to avoid a break in update if the SQL fails (especially for non-MySQL) Andreas Müller
05:53 PM bug #9785: Update script for missing unit_ids (matrix)
Some search SQL:
~~~sql
SELECT deb.id, fe.id, fe.titleCache -- , COUNT(*) AS n
FROM DescriptionElementBase deb...
Andreas Müller
05:52 PM bug #9785: Update script for missing unit_ids (matrix)
An Update for MySQL:
~~~
UPDATE DescriptionElementBase deb LEFT OUTER JOIN DefinedTermBase fe ON fe.id = deb.feat...
Andreas Müller
04:14 PM bug #9477 (Closed): New ordered terms do not have correct order index
Andreas Müller
04:10 PM feature request #8979 (Closed): Prevent misuse of field initial for personal names
Andreas Müller
12:05 PM feature request #8979: Prevent misuse of field initial for personal names
In Vaadin perfectly implemented there 100%, but did not check the TaxEditor if it is there relevant. Wolf-Henning Kusber
04:09 PM task #9308 (Closed): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Andreas Müller
11:33 AM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Task is perfectly implemented, ticket can be closed. Wolf-Henning Kusber
04:06 PM bug #8936: Improve default distribution formatting
It looks item suffix is currently not yet handled correctly in Drupal Code.
Example from mexico flora: https://13...
Andreas Müller
12:17 PM bug #9812 (Closed): Display of scientific name in the list-view of Vaadin
As of 15 Oct 2021 scientific names (Vaadin release system) are displayed mainly without blanks between genus, species... Wolf-Henning Kusber
11:59 AM feature request #7640 (Closed): Update ISO country names where necessary
Andreas Müller
11:49 AM feature request #7640: Update ISO country names where necessary
I am happy with the implementation, short names and it is clear which country is meant. Tested it in Vaadin, release ... Wolf-Henning Kusber

10/13/2021

03:22 PM bug #9797 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
new ticket for the open issue #9811 Andreas Kohlbecker
03:22 PM bug #9811 (Closed): regression through removal of `TaxonRelationshipBeanProcessor` ?
It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture502-1.pn...
Andreas Kohlbecker

10/12/2021

05:45 PM task #9123 (Closed): Fix BigDecimal algebra in aggregation algorithms
Moved polytomous key handling to new ticket #9810 Andreas Müller
05:35 PM task #9810 (New): Test if BigDecimal algebra is correct in PolytomousKey algorithms
copied from #9123 and #8978
Aggregation is checked and fixed in the meanwhile (#9123)
Andreas Müller
05:31 PM feature request #9798 (Closed): Import Spanish representations for countries
Andreas Müller
04:02 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture143-1.pn...
Andreas Kohlbecker
02:25 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
There are still problems with loading MAN, e.g. https://europlusmed.org/cdm_dataportal/search/results/taxon?ws=portal... Andreas Müller
02:52 PM Revision 29d0b0f6 (cdmlib-apps): some upgrade for BgbmInstancesUpdater
Andreas Müller
02:37 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
Andreas Kohlbecker
02:30 PM bug #9808 (Resolved): option to disable ssl/tsl certificate validation of the cdm webserver
Applied in changeset commit:cdm-dataportal|91313ab4c0d34ddd9d9c745e268b16c4eefe234b. Andreas Kohlbecker
02:29 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
in situations when a self signed certificate is being used with the cdmserver it is needed to disable certificate val... Andreas Kohlbecker
02:37 PM feature request #9786 (Closed): Implement tags CY and fix PY handling for RIS import
This should work as tests exist. If there are open issues we should add them to #9809 Andreas Müller
02:35 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
Generally this works. However, there are a couple of open issues handled in #9809. Andreas Müller
02:34 PM feature request #9809: Implement further tags for RIS reference import
NaK:
Nur bei Book Chapters funktioniert der Import nur teilweise, dafür muss man ja das Buch separat anlegen und d...
Andreas Müller
02:31 PM feature request #9809 (New): Implement further tags for RIS reference import
in #6636 and #9786 the most important tags for RIS import have been implemented. However, there are a couple of more ... Andreas Müller
02:31 PM Revision 17ed1083 (cdm-dataportal): Merge tag '5.27.1' into develop
tagging hfx release Andreas Kohlbecker
02:31 PM Revision 827c80d5 (cdm-dataportal): Merge branch 'hotfix/5.27.1'
Andreas Kohlbecker
02:31 PM Revision 2415b2e3 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
02:30 PM Revision 91313ab4 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
10:27 AM Revision 6b34400c (cdmlib): minor and cleanup
Andreas Müller

10/11/2021

09:55 PM feature request #6818: Default Image Viewer: setting to enable display of 'Media Representations'
According to commit this was fixed in 4.9 Andreas Müller
09:49 PM bug #7979: Registration date and time, display
Can we adapt milestone or remove it? Andreas Müller
09:46 PM bug #4721 (Feedback): RestServices for list methods return error when index is out of range
Is this still an open issue? The above link seems to return a correct empty list now. Andreas Müller
09:10 PM bug #3635: Protologue media should also be displayed when mime type is missing
is this still an open issue? Andreas Müller
09:08 PM bug #3511: errors are not cleared after reloading the configuration
is this still an open issue? Andreas Müller
08:52 PM bug #2592 (Worksforme): InvalidDataAccessApiUsageException when saving description scope
I could save a scope for a description now so I guess this issue is solved in the meanwhile. Andreas Müller
08:15 PM bug #5484 (Worksforme): Connecting to local H2 via local Mgd throws NPE in CdmServiceCacher
I cannot reproduce therefore close as worksforme Andreas Müller
08:14 PM bug #5485 (Duplicate): h2 database connection fails if datasource view is open
This is either fixed already or will be fixed once #9742 is fixed. I tested with a workaround using AUTO_SERVER=TRUE Andreas Müller
08:01 PM feature request #9771 (In Progress): Implement Cdm2Cdm for vocabularies
Andreas Müller
05:05 PM bug #9807: Matrix should not collapse after aggregation
AM 2021-10-1:
... Wir müssten also entweder doch herausfinden, woran es liegt, dass diese zusätzlichen Knoten ents...
Andreas Müller
04:57 PM bug #9807 (Closed): Matrix should not collapse after aggregation
As the refresh after aggregation lead to row duplications (of taxa and maybe others) it was temporarily implemented i... Andreas Müller
04:37 PM feature request #8706 (Closed): taxeditor error report with timestamps
I guess we can close this ticket. Timestamping generally works. Open new ticket if there are open issues left. Andreas Müller
04:34 PM feature request #8467 (Closed): Save a "snapshot" of the SpecimenDescriptions used for aggregation
This for me seems to be fixed. Open issue on visibility of clones moved to new ticket #9806 Andreas Müller
04:32 PM bug #9806: Clones should not be editable in factual data view and elsewhere
AM: (2021-10-7)
Descriptions Clones, die an Specimens oder auch Taxa hängen sind derzeit noch normal bearbeitbar.
...
Andreas Müller
04:31 PM bug #9806 (Closed): Clones should not be editable in factual data view and elsewhere
copied from #8467:
Currently only aggregated data are not editable (depending on configuration). Also cloned data ...
Andreas Müller
04:04 PM feature request #7981 (Closed): Add configuration UI for matrix description aggregation
I created a ticket for old and new open issues: #9805 Andreas Müller
04:03 PM feature request #9805 (New): Open issues for DDS aggregation dialogue
copied from #7981
- ~~aggregating full dataset does not work~~ (#9803)
- ~~matrix should not collapse after aggre...
Andreas Müller
03:30 PM feature request #7980 (Closed): Enhance matrix description aggregation
Andreas Müller
03:27 PM feature request #7980: Enhance matrix description aggregation
open issues moved to #9804 Andreas Müller
03:27 PM feature request #9804 (New): Further enhance description aggregation
copied from #7980
- consider default values during aggregation
- deal with outliers etc.
- improve error and ...
Andreas Müller
02:37 PM Revision 4fdc7952 (cdm-server): Merge branch 'release/5.27.0' into develop
jenkins
02:37 PM Revision ee86969f (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
02:36 PM Revision 0be21ca1 (cdm-server): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:36 PM Revision cc117ebd (cdm-webapp): Merge branch 'release/5.27.0' into develop
jenkins
02:36 PM Revision 4611dabe (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
02:35 PM Revision 1c9fea82 (cdm-webapp): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:35 PM Revision 2971458c (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.27.0
jenkins
02:33 PM feature request #9795 (Closed): Add literature descriptions to matrix aggregation
Andreas Müller
02:32 PM bug #9803: Aggregating full dataset does not work
Related to this I found that there is redundancy in the code. This lead to a failing fix for the rank handling as it ... Andreas Müller
12:53 PM bug #9803 (Closed): Aggregating full dataset does not work
Choosing "Aggregate all taxa of the descriptive datase" currently does not work.
This is because the dataset varia...
Andreas Müller
02:10 PM Revision 17e0ac1e (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
02:09 PM Revision 7bd11533 (taxeditor): Merge branch 'release/5.27.0' into develop
jenkins
02:09 PM Revision c89621ab (taxeditor): Merge branch 'release/5.27.0'
jenkins
02:07 PM Revision 9a47de32 (cdm-dataportal): Merge branch 'release/5.27.0' into develop
jenkins
02:07 PM Revision 1032dd43 (cdm-dataportal): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:06 PM Revision 0780d58d (cdm-vaadin): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:06 PM Revision 44c4fa25 (cdm-dataportal): release-preparation: production level css
jenkins
02:06 PM Revision e8da55e7 (cdm-vaadin): jenkins bumping cdmlib.version to 5.27.0
jenkins
02:06 PM Revision 0e3b1877 (cdmlib): Updating develop poms back to pre merge state
jenkins
02:06 PM Revision 295c852f (cdmlib): Merge branch 'master' into develop
jenkins
02:06 PM Revision afb06063 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
02:06 PM Revision dab26056 (cdmlib): Merge branch 'release/5.27.0'
jenkins
01:47 PM Revision 51bd4576 (cdmlib): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
01:41 PM Revision 575a6bd5 (cdmlib-apps): ref #9778 adapt redlist import to new existing ranks lusus and subproles
Andreas Müller
01:40 PM Revision dab55660 (cdmlib-apps): ref #9780 fix grex handling in some scripts
Andreas Müller
01:38 PM Revision ae1ae34c (cdmlib-apps): remove JvmLimitsException handling form EuroMedDistributionAggregationActivator
Andreas Müller
01:03 PM Revision 48009893 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.27.0-SNAPSHOT
jenkins
01:03 PM Revision a95975ed (cdm-webapp): updating poms for 5.28.0-SNAPSHOT development
jenkins
01:03 PM Revision 9af719d8 (cdm-webapp): updating poms for 5.27.0 branch with snapshot versions
jenkins
01:03 PM Revision 01d670ed (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.28.0-SNAPSHOT
jenkins
01:01 PM Revision 70a62925 (cdm-vaadin): jenkins bumping cdmlib.version to 5.27.0-SNAPSHOT
jenkins
01:01 PM Revision 7cf401e1 (taxeditor): Updated version in pom / project files to taxeditor version : 5.28.0-SNAPSHOT and cdmlib version : 5.28.0-SNAPSHOT
jenkins
01:01 PM Revision 47020ac1 (cdm-vaadin): updating poms for 5.28.0-SNAPSHOT development
jenkins
01:01 PM Revision 104bacb0 (cdm-vaadin): updating poms for 5.27.0 branch with snapshot versions
jenkins
01:01 PM Revision 2be1f4fa (taxeditor): Updated version in pom / project files to taxeditor version : 5.27.0 and cdmlib version : 5.27.0
jenkins
01:01 PM Revision 09f6d172 (cdm-vaadin): jenkins bumping cdmlib.version to 5.28.0-SNAPSHOT
jenkins
01:01 PM Revision 9bc9587a (cdm-server): updating poms for 5.28.0-SNAPSHOT development
jenkins
01:00 PM Revision f2fca10a (cdm-dataportal): updating poms for 5.28.0-SNAPSHOT development
jenkins
12:57 PM Revision 206c20c1 (cdmlib): updating poms for 5.28.0-SNAPSHOT development
jenkins
12:55 PM Revision bbcd0abb (taxeditor): ref #9803 better handling of redundant minMaxRank and geoFilter handling in aggregation wizard
Andreas Müller
11:24 AM bug #9802 (New): Label for min=max does not unify values in Matrix QuantitativeData label provider
e.g. I get [987-987] instead.
Also the unit is missing.
In general we should try to unify the matrix label with...
Andreas Müller

10/08/2021

09:43 PM Revision f717518e (cdmlib): remove deprecated method
Andreas Müller
09:39 PM Revision 3c420001 (cdmlib): ref #9801, ref #7980, ref #8871 remove aggregated source descriptions from aggregation and fix persistence issues
Andreas Müller
09:18 PM bug #9801 (New): Orphan removal does not work correctly for CdmLinkSource
as part of OriginalSourceBase. As it is 1:1 the mapping should be done the other way round to make orphan removal wor... Andreas Müller
05:57 PM Revision c50ece59 (cdmlib): cleanup
Andreas Müller
04:05 PM Revision 1ac9cae7 (taxeditor): ref #7981: avoid NPE
Katja Luther
03:56 PM Revision a9b7ea5d (cdmlib): ref #9772 add deproxy to collector title computation
Andreas Müller
01:40 PM Revision 80bbeb1b (cdmlib): change line number for debugging
Andreas Müller
01:31 PM Revision 541ae6bc (cdmlib): ref #7980 fix concurrent modification exception
Andreas Müller
01:15 PM Revision e7e11b99 (taxeditor): set default for unpublished taxa to true
Katja Luther
01:06 PM Revision f11b2271 (taxeditor): set default sel in wizard to values in configurator
Katja Luther
01:04 PM Revision 843fbe64 (cdmlib): cleanup
Andreas Müller
01:04 PM Revision 7fee6b88 (cdmlib): ref #7980 fix NoSuchElement exception (cont.)
Andreas Müller
11:48 AM Revision 2374e385 (taxeditor): ref #7981: select configuration default values
Katja Luther
11:07 AM Revision 4ca90889 (cdmlib): ref #9772: adapt collectorstring, use collectorTitleCache
Katja Luther
10:42 AM Revision 305b0475 (taxeditor): statistical value details view should be disabled for computed desc
Katja Luther
10:30 AM Revision ef1a6397 (cdmlib): ref #7980 fix NoSuchElement exception
Andreas Müller
12:02 AM Revision edfed83c (taxeditor): cleanup
Andreas Müller

10/07/2021

11:57 PM Revision c978affc (taxeditor): cleanup
Andreas Müller
11:45 PM Revision a1417825 (taxeditor): cleanup
Andreas Müller
10:18 PM Revision 3194d52a (cdmlib): update Datasource script
Andreas Müller
08:44 PM Revision c0228744 (taxeditor): ref #7981 adapt label for aggregated taxa/subtrees
Andreas Müller
07:42 PM Revision 1a96d01d (cdmlib): ref #7980, ref #8871 improve error handling and verification in aggregations
Andreas Müller
06:32 PM Revision 293b1494 (cdmlib): cleanup, javadoc and minor
Andreas Müller
06:31 PM Revision bdd1b0c7 (cdmlib): ref #7980 fix aggregation for titleCache of reused descriptions
Andreas Müller
06:29 PM Revision 6ce5c551 (cdmlib): ref #7980 fix aggregation for measurement units (still open are not equal units)
Andreas Müller
06:26 PM Revision 74ccd9f4 (cdmlib): adapt dummy measurement unit to meter in test dataset
Andreas Müller
05:18 PM Revision cdcad85a (taxeditor): ref #7981: read aggSourceMode from configurator in aggregation wizard (cont. II)
Andreas Müller
04:20 PM Revision 6b6b71cf (cdmlib): ref #7980 fix tests for aggregation source mode
Andreas Müller
03:58 PM Revision 469b4d69 (taxeditor): ref #7981: read aggSourceMode from configurator in aggregation wizard (cont.)
Andreas Müller
03:56 PM Revision f677247f (cdmlib): ref #7981, ref #7980, ref #8871 explicitly defined source modes for aggregation configurators
Andreas Müller
03:55 PM Revision d98a1622 (cdmlib): javadoc
Andreas Müller
03:25 PM Revision a76ae357 (taxeditor): ref #7981: read aggSourceMode from configurator in aggregation wizard
Andreas Müller
03:24 PM Revision 583471b3 (taxeditor): cleanup
Andreas Müller
01:07 PM Revision b7ad4bb2 (cdmlib): some renaming
Andreas Müller
01:02 PM Revision 6163ee20 (cdmlib): ref #8871, ref #7980 handle aggregation source mode TAXON for toParent
Andreas Müller
11:04 AM Revision 82b18118 (cdmlib): ref #8871, ref #7980 handle aggregation source modes for SDD aggregation
Andreas Müller
10:26 AM Revision 472080b4 (taxeditor): ref #9772: fix doubled menu items
Katja Luther
10:04 AM Revision 7e1619ea (cdmlib): ref #8871, ref #7980 adapt available source modes for DDS aggregation
Andreas Müller
09:47 AM Revision 67c1a4e3 (taxeditor): sort taxon nodes in taxon filter of DDS editor
Katja Luther
02:10 AM Revision a4001175 (cdmlib): ref #8871 try to fix failing aggregation tests (cont.)
Andreas Müller
01:50 AM feature request #9795 (Resolved): Add literature descriptions to matrix aggregation
this is probably fully resolved Andreas Müller
01:49 AM task #8871 (In Progress): Remaining issues to unify description aggregation methods
Andreas Müller
01:47 AM Revision bfbf1c9c (cdmlib): cleanup
Andreas Müller
01:46 AM Revision 67c26aa8 (cdmlib): ref #8871 try to fix failing aggregation tests
Andreas Müller
01:40 AM Revision 4b70788c (cdmlib): ref #8871, ref #9331 fix DescriptionElementSource.clone , e.g. for DistributionAggregation
Andreas Müller
01:33 AM Revision f600798d (cdmlib): cleanup
Andreas Müller

10/06/2021

10:13 PM Revision 98623528 (cdmlib): cleanup and minor
Andreas Müller
06:28 PM Revision 5f20c74a (cdmlib): ref #7980 delete not needed descriptions after aggregation
Andreas Müller
06:25 PM Revision 569f15d4 (cdmlib): fix problem with strange DefinedTermBase_InverseRepresentation_AUD1 metadata
Andreas Müller
06:24 PM Revision 0e0fe1fb (cdmlib): cleanup and minor
Andreas Müller
06:21 PM Revision fe503ae0 (cdmlib): remove handling for not thrown exception JvmLimitsExceed
Andreas Müller
02:58 PM Revision 505cd4db (taxeditor): show all description elements in factual data view of taxa
Katja Luther
02:31 PM Revision ac67f386 (cdmlib): ref #7980 minor changes to aggregation tests
Andreas Müller
02:31 PM Revision 37cdc012 (cdmlib): ref #7980 reduce minFreeHeap for aggregation (cont.)
Andreas Müller
02:30 PM Revision c1c6c66e (cdmlib): cleanup
Andreas Müller
02:16 PM Revision 4296d7cb (cdmlib): ref #7980 reduce minFreeHeap for aggregation
Andreas Müller
01:40 PM Revision 120c4ab8 (taxeditor): default for availableForTaxa and availableForSpecimen set to true
Katja Luther
01:34 PM Revision c549e4d6 (taxeditor): add available for parts to character details
Katja Luther
12:08 PM Revision e8edefb2 (cdmlib): cleanup
Andreas Müller
12:08 PM Revision 5d1ef7fc (cdmlib): ref #9510 adapt specimens holding description label (cont. II)
Andreas Müller
11:31 AM bug #9510 (In Progress): Improve label for descriptions created via DDS matrix
Andreas Müller
11:29 AM Revision 7f25cd4e (cdmlib): ref #9510 adapt specimens holding description label (cont.)
Andreas Müller
11:28 AM Revision 24190230 (cdmlib): cleanup
Andreas Müller
11:26 AM feature request #9511 (Resolved): Move specimens/individual associations for matrix into same description
This seems to be fixed in the meanwhile. Can you please double check and if true close the ticket?
If you find the...
Andreas Müller
11:06 AM Revision a5c8139e (cdmlib): cleanup and explicit title for IndividualsAssociation taxon descriptions
Andreas Müller
10:30 AM Revision a1a25627 (cdmlib): minor
Andreas Müller
09:26 AM bug #6523: Correct display of misspellings in synonymy
another example case from the carypophyllales portal:
----
ich habe eben gesehen, dass die misspellings im Po...
Andreas Kohlbecker

10/05/2021

11:54 PM Revision 310956ec (cdmlib): fix compile error and cleanup (cont.)
Andreas Müller
11:50 PM Revision b78fe281 (cdmlib): fix compile error and cleanup
Andreas Müller
11:36 PM Revision 12da0940 (cdmlib): cleanup
Andreas Müller
11:30 PM Revision 09b7d505 (cdmlib): ref #7980, ref #8871, ref #9795 fix source handling in StructuredDescriptionAggregation
Andreas Müller
03:09 PM Revision 9b4330d1 (cdmlib): revert add supresswarning annotation
Katja Luther
02:39 PM Revision 06367522 (cdmlib): cleanup
Andreas Müller
02:39 PM Revision 8d87730d (cdmlib): fix compile error
Andreas Müller
02:01 PM Revision 44900eab (cdmlib): remove cloneNotSupportedException from DescriptionElementBase and some cleanup
Andreas Müller
01:55 PM Revision 802b31bc (cdm-dataportal): avoiding usage of deprecated property determinedNames
Andreas Kohlbecker
01:46 PM Revision eb1d334b (cdmlib): code cleaning - continue
Katja Luther
01:35 PM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Can you please also leave a note which model objects have been replaced by this ticket?
>
...
Katja Luther
01:21 PM bug #9772 (Resolved): Improve DTO usage for character matrix
Code cleaning done for TaxonNodeService/Dao and DescriptiveDatasetService. Katja Luther
10:54 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Please check also if code is clean. E.g. I found DescriptiveDatasetService.getDescriptiveDat...
Katja Luther
08:45 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Same in TaxonNodeServiceImpl.getTaxonNodeDtos().
>
> By the way I wonder if all these HQL...
Katja Luther
01:28 PM Revision c6890f7a (cdmlib): code cleaning - continue
Katja Luther
01:17 PM Revision b3c135e2 (cdmlib): code cleaning
Katja Luther
01:15 PM Revision 128317f4 (cdmlib): code cleaning
Katja Luther
10:53 AM Revision 3ed10837 (cdmlib): ref #9772: code cleaning - move hql code to persistence
Katja Luther
09:57 AM Revision c61c9db0 (cdmlib): code cleaning, move hql queries to dao
Katja Luther
09:40 AM bug #9800 (In Progress): Open issues for character matrix
* implement the details view again to be able to edit some more advanced data like the modifiers. This worked in earl... Katja Luther
09:40 AM bug #9799 (New): Details view should be available for character matrix
Implement the details view again to be able to edit some more advanced data like the modifiers. This worked in earlie... Katja Luther
09:30 AM bug #9073 (Worksforme): Configuring the matrix view throws HTTP invoker exception
could not reproduce this anymore, so close this ticket. Katja Luther
09:20 AM bug #8243: Cdm Cache uses a lot of disk space
We should have a look on this with the new implementation because the matrix worked with descriptions and descriptive... Katja Luther
08:56 AM bug #9074: Specimen missing a collector + n° and missing a collection identifier (Barcode, Accession number) not identifiable in descriptive Matrix
With the actual implementation the "collector & nr" field is always filled, if a field unit with collector and collec... Katja Luther

10/04/2021

04:34 PM bug #9772: Improve DTO usage for character matrix
Same in TaxonNodeServiceImpl.getTaxonNodeDtos().
By the way I wonder if all these HQL statements are necessary. Ha...
Andreas Müller
04:23 PM bug #9772: Improve DTO usage for character matrix
Please check also if code is clean. E.g. I found DescriptiveDatasetService.getDescriptiveDataSetDtoByUuid() which inc... Andreas Müller
04:01 PM bug #9772: Improve DTO usage for character matrix
Can you also check for other open matrix tickets and add the new tag "matrix" to them so we can check for all open ma... Andreas Müller
03:52 PM bug #9772: Improve DTO usage for character matrix
Generally we can close this ticket. Andreas Müller
03:52 PM bug #9772: Improve DTO usage for character matrix
Can you please also leave a note which model objects have been replaced by this ticket?
And can you check the (new...
Andreas Müller
03:50 PM bug #9772: Improve DTO usage for character matrix
This generally seems to work now as expected.
I guess we need to create a couple of follow-up tickets. I could thi...
Andreas Müller
02:24 PM bug #9772: Improve DTO usage for character matrix
Some more tests (with Lactucinae):
found two issues, both are already fixed:
* avoid NPE for quantitative data ...
Katja Luther
11:33 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Adding a new literature to a taxon does show the taxon row 2x if a specimen description for ...
Andreas Müller
11:30 AM bug #9772 (Feedback): Improve DTO usage for character matrix
Adding a new literature to a taxon does show the taxon row 2x if a specimen description for this taxon existed before... Andreas Müller
04:25 PM Revision 4deab588 (cdmlib): cleanup
Andreas Müller
03:35 PM bug #9796 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
the changes seem to solve the initialization problems without noticeable side-effects.
Andreas Kohlbecker
02:53 PM Revision cbd2db51 (taxeditor): ref #7981: fix enable/disable in aggregation wizard
Katja Luther
02:44 PM Revision d10e83d5 (cdmlib): ref #9772 cleanup SpecimenOrObservationBaseDTO (cont.)
Andreas Müller
02:39 PM Revision 20baf421 (cdmlib): cleanup SpecimenOrObservationBaseDTO
Andreas Müller
02:12 PM Revision 0b54e3e1 (cdmlib): ref #7980, ref #8871 reuse description items for DDS aggregation
Andreas Müller
02:09 PM Revision 22f2a9b8 (cdmlib): cleanup
Andreas Müller
02:08 PM Revision 44ddcdb3 (taxeditor): ref #9772: check for changes before start aggregation
Katja Luther
02:06 PM Revision 11baea18 (cdmlib): ref #7980 remove multiple description items for same feature from reused description
Andreas Müller
01:52 PM bug #9797 (Resolved): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
Andreas Kohlbecker
01:52 PM Revision c7378b10 (cdmlib): ref #9797 introducing TaxonAutoInitializer to init taxonNodes and adapting init strategies
Andreas Kohlbecker
01:52 PM Revision 6f10f4a4 (cdmlib): ref #9797 comment on UNUSED TaxonNodeAutoInitializer
Andreas Kohlbecker
01:52 PM Revision 19732d4e (cdmlib): ref #9797 disabling and deprecating TaxonRelationshipBeanProcessor
Andreas Kohlbecker
01:50 PM Revision 4bb63f91 (cdmlib): ref #9797 better trace logging for bean initialization
Andreas Kohlbecker
01:50 PM Revision 7eb8206e (cdmlib): ref #9797 Taxon.isMisapplicationOnly() as transient method
Andreas Kohlbecker
12:54 PM Revision 64e5bc9f (cdmlib): ref #9772: add collectors string with collector and collectorsnumber
Katja Luther
12:25 PM Revision 337fab7d (taxeditor): ref #9772: fix collector and number
Katja Luther
12:23 PM Revision e0bfdfcc (cdmlib): ref #9772: add collectors string with collector and collectorsnumber
Katja Luther
09:28 AM Revision bf9c6f71 (cdmlib): ref #7981: fix taxonnodeDto taxon titlecache
Katja Luther

10/02/2021

02:13 AM Revision dd94a952 (cdmlib): add CDMLINK to ClearDB_with_Terms_DataSet.xml
Andreas Müller
12:18 AM Revision 0f720e98 (cdmlib): minor and cleanup
Andreas Müller

10/01/2021

09:46 PM Revision 476ec51f (cdmlib): include taxon name in taxon node referencing objects formatter
Andreas Müller
07:26 PM Revision 2d5e8696 (cdmlib): fix compile error
Andreas Müller
07:15 PM Revision 36ccd41f (cdmlib): cleanup
Andreas Müller
06:15 PM Revision 405677c2 (taxeditor): ref #7981: indent added
Katja Luther
06:10 PM Revision b52812b1 (cdmlib): ref #7981: fix taxonnodeDto taxon titlecache
Katja Luther
05:51 PM Revision 52002b9b (taxeditor): ref #7981: improve aggregation ui
Katja Luther
05:41 PM Revision 6991db68 (taxeditor): disable 'use default descr' in aggreg config wizard
Katja Luther
04:24 PM Revision 405ec428 (taxeditor): ref #7981 update labels for aggregation filter selection
Andreas Müller
01:22 PM Revision 114b2aae (cdmlib): fix wrong parameters in taxonnodeDto in DDS Dto
Katja Luther
01:15 PM Revision e83d7600 (taxeditor): ref #7981 fix literature description default value handling
Andreas Müller
01:01 PM Revision f4bb39c6 (taxeditor): cleanup
Andreas Müller
01:01 PM Revision 8f7bd0a1 (taxeditor): ref #7981 improve publish, literature and default description handling in StructuredDescriptionAggregationConfigurationWizardPage (cont.)
Andreas Müller
01:01 PM Revision 6c5aa726 (taxeditor): ref #7981 move "Aggregate all taxa in descriptive dataset" to top
Andreas Müller
01:01 PM Revision e1834f73 (taxeditor): ref #7981 improve publish, literature and default description handling in StructuredDescriptionAggregationConfigurationWizardPage
Andreas Müller
01:00 PM Revision e0142947 (taxeditor): cleanup
Andreas Müller
12:04 PM Revision 1f7cd5bd (taxeditor): set default values in aggregation conf wizard for the new attributes
Katja Luther
10:56 AM Revision f7186f68 (cdmlib): Simplify stateData comparator
Andreas Müller
10:44 AM Revision f33239f5 (cdmlib): fulfill compare contract for stateData comparator
Katja Luther
10:32 AM Revision 7398f69e (taxeditor): avoid NPEs
Katja Luther
10:32 AM feature request #9798: Import Spanish representations for countries
Import is prepared but still needs to run after the next release Andreas Müller
10:07 AM feature request #9798 (Resolved): Import Spanish representations for countries
Applied in changeset commit:cdmlib-apps|9920661b646173b407c80a48fba951c648f011fc. Andreas Müller
09:32 AM feature request #9798 (Closed): Import Spanish representations for countries
We can use the same code as for the German/Latin ranks written for edaphobase. Andreas Müller
10:17 AM Revision 317f174d (cdmlib): minor
Andreas Müller
10:17 AM Revision 1e12fcd5 (cdmlib): ref #9798 add Spanish country labels to term csv files
Andreas Müller
10:07 AM Revision 9920661b (cdmlib-apps): fix #9798 add activator for Spanish country representations
Andreas Müller
10:05 AM Revision 6efca48a (cdmlib-apps): cleanup
Andreas Müller
10:05 AM Revision c1a05f5d (cdmlib-apps): Adapt E+M aggregation activators to new AggregationMode.byXXX signatures
Andreas Müller
09:51 AM Revision 114b1bfe (cdmlib): avoid NPE in state comparat
Katja Luther
09:39 AM Revision 61a16467 (taxeditor): add additional attributes to aggregation wizard
Katja Luther
09:34 AM Revision 526223e5 (cdmlib): cleanup
Andreas Müller
09:34 AM Revision 5cea4919 (cdmlib): ref #9798 make Spanish uuid public
Andreas Müller
09:24 AM Revision 2abccc58 (taxeditor): ref #7981 enable source modes for checked aggregation modes and some code cleaning
Andreas Müller
09:11 AM Revision 94dfa139 (cdmlib): sort states in aggregated descriptions on count - continue
Katja Luther
08:56 AM bug #9797 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
eg:
http://localhost:8080/portal/taxon/b384de9c-0a70-48e9-8fcc-1f772a331544.json
http://int.e-taxonomy.eu/cd...
Andreas Kohlbecker
08:48 AM Revision e2171f2a (cdmlib): sort states in aggregated descriptions on count
Katja Luther
08:42 AM Revision 8cb33c6c (taxeditor): javadoc
Andreas Müller

09/30/2021

06:35 PM Revision 838c7344 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther
06:32 PM Revision 45140a15 (cdmlib): ref #9772: do not create empty elements in taxon descriptions
Katja Luther
05:49 PM Revision c9369579 (cdmlib): ref #9795 include literature aggregation by default
Andreas Müller
05:49 PM Revision ecaf2cf6 (cdmlib): cleanup
Andreas Müller
05:46 PM Revision 3b6350d6 (cdmlib): ref #7980 fix NPE for StateData having no state
Andreas Müller
05:46 PM Revision 1d1c2ae7 (cdmlib): ref #8871 remove isAggregateToHigherRanks from StructuredDescriptionAggregationConfiguration
Andreas Müller
02:03 PM bug #9630: Make the handling of computed description configurable
Added check whether a d&d target is a computed description. Katja Luther
02:02 PM Revision 1df9cf60 (taxeditor): ref #9630: d&d should not allowed to a computed description if
Katja Luther
01:49 PM Revision 1475999b (taxeditor): ref #9772: revert some changes in l10n
Katja Luther
12:51 PM Revision 0e123335 (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
Katja Luther
12:50 PM Revision 4512ae1c (taxeditor): ref #9772: code cleaning
Katja Luther
12:44 PM bug #9772 (Resolved): Improve DTO usage for character matrix
There are still two UI issues, the color of the field where a default description exists, changes (of the color) are ... Katja Luther
09:56 AM bug #9772 (In Progress): Improve DTO usage for character matrix
Katja Luther
09:56 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Katja Luther wrote:
> > need to be tested:
>
> what does this mean? Did you test it or i...
Katja Luther
09:35 AM bug #9772: Improve DTO usage for character matrix
Katja Luther wrote:
> need to be tested:
what does this mean? Did you test it or is it still to be done?
Andreas Müller
09:17 AM bug #9772: Improve DTO usage for character matrix
need to be tested:
* add new specimen, add character data -> save , add more character data -> save -> check for d...
Katja Luther
12:04 PM Revision e3c9d137 (taxeditor): ref #7981 include unpublished to taxon filter (explicit checkbox is still missing)
Andreas Müller
12:04 PM Revision ff7bfebe (taxeditor): ref #7981 fill DDS aggregation dialogue with correct values for aggregation mode
Andreas Müller
12:04 PM Revision a89350b0 (taxeditor): fix potential NPE in AggregationConfigurationWizardPage
Andreas Müller
12:04 PM Revision 3e4d8bf8 (taxeditor): Cleanup aggregation handler
Andreas Müller
12:04 PM Revision 5a83898e (taxeditor): cleanup
Andreas Müller
10:51 AM Revision bb03a041 (taxeditor): ref #9772: redraw after literature desc creation and code cleaning
Katja Luther
10:40 AM Revision 926b7eda (cdmlib): ref #9772: continue solving problems with rowWrapper
Katja Luther
10:05 AM Revision bd94706c (cdmlib): ref #9772: fix problems with doubled states in literature descriptions
Katja Luther
08:01 AM Revision d70979a4 (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
Katja Luther
07:58 AM Revision a0914872 (taxeditor): ref #9772: fix problems with rowWrapper
Katja Luther
07:54 AM Revision 205624c1 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther
07:53 AM Revision a0f0c203 (cdmlib): ref #9772: fix problems with rowWrapper
Katja Luther

09/29/2021

04:11 PM bug #9796 (Resolved): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
Andreas Kohlbecker
03:51 PM bug #9796: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
this is related to the changes made for #9433 ( commit:40708c6 ) Andreas Kohlbecker
03:13 PM bug #9796 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
eg:
http://test.e-taxonomy.eu/cdmserver/euromed/portal/taxon/e1688082-958a-4787-9afa-f46297920eee.json
htt...
Andreas Kohlbecker
04:03 PM Revision a1012824 (cdmlib): ref #9796, ref #9433 extending init strategy for related taxa
Andreas Kohlbecker
03:56 PM Revision c13b2469 (taxeditor): fix compile errors and cleanup
Andreas Müller
03:46 PM feature request #8713 (Closed): Improve structured descriptive data aggregation
remaining issues handled in #7980 Andreas Müller
03:38 PM Revision 8a6770d6 (cdmlib): ref #9795 evaluate includeLiterature
Andreas Müller
03:08 PM Revision 9341b749 (cdmlib): rename static AggregationMode methods
Andreas Müller
02:51 PM Revision 9c09a16e (cdmlib): minor
Andreas Müller
02:40 PM task #9123: Fix BigDecimal algebra in aggregation algorithms
Rounding in aggregation is now done using MathContext.DECIMAL32 and stripTrailingZeros(). This avoids rounding errors... Andreas Müller
11:49 AM task #9123 (In Progress): Fix BigDecimal algebra in aggregation algorithms
There is a problem with average computing in aggregation. RoundingMode is missing.
Once this is fixed we need to che...
Andreas Müller
02:32 PM Revision 003ae517 (cdmlib): minor
Andreas Müller
02:31 PM Revision b7cfb9fb (cdmlib): ref #9123 improve precision handling for average computing in DDS aggregation
Andreas Müller
11:52 AM Revision b55fc921 (cdmlib): ref #9123 add rounding to average computing in DDS aggregation (not yet complete)
Andreas Müller
10:02 AM Revision e55c87fd (cdmlib): ref #7980 add exception message to unhandled exception handling
Andreas Müller
10:00 AM Revision e176d33f (cdmlib): put failing test preliminary to ignore
Andreas Müller
10:00 AM Revision 058e1e67 (cdmlib): cleanup
Andreas Müller
09:54 AM Revision 02f22141 (taxeditor): ref #7981 try to handle exceptions in structured aggregation handler
Andreas Müller
09:52 AM Revision 9bd56314 (taxeditor): cleanup
Andreas Müller
09:04 AM Revision ef827ced (cdmlib): add stacktrace handling for StructuredDescriptionAggregationTest (cont.)
Andreas Müller
09:03 AM Revision c356f10f (cdmlib): cleanup UpdateResult
Andreas Müller
08:44 AM Revision db3f7e5d (cdmlib): add stacktrace handling for StructuredDescriptionAggregationTest
Andreas Müller

09/28/2021

11:21 PM feature request #9795 (In Progress): Add literature descriptions to matrix aggregation
Andreas Müller
11:19 PM feature request #9795 (Closed): Add literature descriptions to matrix aggregation
copied from #7980 Andreas Müller
11:21 PM Revision 7043c4ee (cdmlib): ref #9795 add literature descriptions to matrix aggregation
Andreas Müller
11:14 PM Revision 83efeb94 (cdmlib): minor issues for StructuredDescriptionAggregationTest
Andreas Müller
01:31 PM bug #9794 (Closed): external-links: World Flora Online link template improved
done! Andreas Kohlbecker
01:19 PM bug #9794 (Closed): external-links: World Flora Online link template improved
the external link to World Flora Online results in a too unspecific search and returns far too many results.
Eckha...
Andreas Kohlbecker
01:31 PM Revision 1272ab60 (cdm-dataportal): ref #9794 wfo link improved - update script
Andreas Kohlbecker
01:21 PM Revision eeb2bfe0 (cdm-dataportal): ref #9794 wfo link improved
Andreas Kohlbecker
11:36 AM task #9793 (New): webservice versioning strategy
see
https://dzone.com/articles/rest-api-versioning-strategies-1
Andreas Kohlbecker
11:17 AM Revision 310a5f85 (taxeditor): id column in specimen selection dialog smaller and moved
Katja Luther
11:14 AM task #9792 (Closed): remove ePic from ext-links
Andreas Kohlbecker
10:52 AM task #9792 (Closed): remove ePic from ext-links
ePIC is gone:
"The requested resource
/searchepic/summaryquery.do
is no longer available on this server and th...
Andreas Kohlbecker
11:13 AM Revision 2c63e9ba (cdm-dataportal): ref #9792 update script to remove epic from stored settings
Andreas Kohlbecker
10:54 AM Revision cf1b2853 (cdm-dataportal): ref #9792 removing ePIC from ext-links
Andreas Kohlbecker
10:50 AM bug #8936 (Closed): Improve default distribution formatting
done Andreas Kohlbecker
10:50 AM Revision a8b43555 (cdm-dataportal): ref #8936 new default for level-0 item_glue
Andreas Kohlbecker
09:50 AM bug #9791 (New): Handle differing media meta data and informations in DB
If media data of a media differs from the data in DB, we need a refresh button and a warning that the informations ar... Katja Luther
09:28 AM feature request #9054: Allow adding taxon descriptions to matrix for taxa which have no specimen descriptions attached yet
As we are currently working on the matrix/additivity issues and as the Borsch workshop is coming closer we should try... Andreas Müller
09:27 AM bug #9790 (Closed): Remove source mode "highest Status" from DDS Aggregation
I tested in TaxEditor and it works as expected. Andreas Müller

09/27/2021

05:27 PM bug #8936: Improve default distribution formatting
Andreas Kohlbecker wrote:
> please can you clarify what exactly the conclusion is that results from the discussion i...
Andreas Müller
04:41 PM bug #8936: Improve default distribution formatting
please can you clarify what exactly the conclusion is that results from the discussion in comment #8936#note-19?
Andreas Kohlbecker
03:59 PM bug #9781: Merge of QuantitativeData or CategoricalData from Character Matrix should not create new records
KL:
Das passiert im RowWrapper (setDataValueForQuantitativeData())
Andreas Müller
03:38 PM bug #9790 (Resolved): Remove source mode "highest Status" from DDS Aggregation
Applied in changeset commit:cdmlib|ef92e1f650be6328f4e3d5b466169ce0f32c1d9d. Andreas Müller
03:37 PM bug #9790 (Closed): Remove source mode "highest Status" from DDS Aggregation
only highest status (or "OnlySameValue") should for now not be available for Descriptive Dataset aggregation.
We n...
Andreas Müller
03:38 PM Revision ef92e1f6 (cdmlib): fix #9790 remove highest status only for DDS source aggregation
Andreas Müller
10:07 AM bug #9789 (New): Missing configurator when deleting a classification
Similar to the deletion of nodes we need a configuration wizard for classifications. Katja Luther
09:51 AM Revision 7c78e6e0 (taxeditor): change color for overridden values
Katja Luther

09/24/2021

07:28 PM feature request #7275 (In Progress): [DISCUSS] Require email address for Users
Andreas Müller
07:26 PM feature request #7276 (In Progress): Make User.email a unique field.
AM:
Eigentlich dachte ich ja wir können sie als rejected schließen. Aber das Thema uniquenes ist natürlich schon k...
Andreas Müller
05:58 PM feature request #9788 (New): Add full stop at the end of bibliographic reference citations in dataportal
AM:
zum Punkt hinter den Quellen: ich kann mich hier nicht mehr genau an die Entwicklung erinnern, aber ich glaube...
Andreas Müller
05:54 PM bug #8936: Improve default distribution formatting
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > The issue in #note-19 is still open. The suggestion is to rem...
Andreas Müller
01:46 PM bug #8936: Improve default distribution formatting
Andreas Müller wrote:
> The issue in #note-19 is still open. The suggestion is to remove Space and use Komma+Space i...
Andreas Kohlbecker
01:38 PM bug #8936 (Feedback): Improve default distribution formatting
The issue in #note-19 is still open. The suggestion is to remove Space and use Komma+Space instead for Level-0 item g... Andreas Müller
01:31 PM bug #8936 (Resolved): Improve default distribution formatting
1. I adapted the setting of the cuba test portal, so that it conforms to the production portal, the setting are now ... Andreas Kohlbecker
02:49 PM Revision ae115efe (cdmlib): code cleaning
Katja Luther
01:53 PM feature request #9787 (New): option to show external kml layers in the taxon/specimen page
Hello Andreas and Raúl,
[Raúl: I intercalated some questions below]
I had asked Raúl your question about the ma...
Andreas Kohlbecker
01:30 PM bug #9762 (Closed): Handle cultivars correctly in TaxEditor
This seems to be fully fixed now. Andreas Müller
11:57 AM bug #9762 (Feedback): Handle cultivars correctly in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > There is a single issue left. When switching back from ICNCP to ICN...
Andreas Müller
12:05 PM Revision 4451d6c9 (taxeditor): ref #9762: adapt l18n strings
Katja Luther
11:47 AM bug #9772 (Resolved): Improve DTO usage for character matrix
All open issues are fixed. Only new issue is the NPE when opening the aggregation. I will check this once the editor ... Andreas Müller
08:21 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Currently it looks like quantitative data characters which support >1 measurment units can n...
Katja Luther
11:39 AM Revision 41fe4def (taxeditor): ref #9772: avoid NPE in aggregation handler - continue
Katja Luther
11:12 AM Revision 2c37ed60 (taxeditor): ref #9772: avoid NPE in aggregation handler
Katja Luther
09:56 AM Revision e719e550 (cdmlib): ref #9772: fix problems with more than one description for one taxon
Katja Luther

09/23/2021

05:52 PM feature request #6640: Integrate RIS Import in taxEditor
KL 2017-05-12 (not sure if still an open issue):
der Ris Import funktioniert jetzt bei mir lokal im Editor.
Den ...
Andreas Müller
05:42 PM bug #9762 (Resolved): Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> There is a single issue left. When switching back from ICNCP to ICNAFP there comes a warning...
Katja Luther
01:29 PM bug #9762: Handle cultivars correctly in TaxEditor
There is a single issue left. When switching back from ICNCP to ICNAFP there comes a warning like:
![](picture728-...
Andreas Müller
01:17 PM bug #9762: Handle cultivars correctly in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > When selecting a rank in the combobox the rank shown below in the l...
Andreas Müller
01:15 PM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> Ok, I found it. Fields that update the nameCache need an annotation @CacheUpdate("nameCache"...
Andreas Müller
09:03 AM bug #9762: Handle cultivars correctly in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Andreas Müller wrote:
> > > > Works c...
Andreas Müller
08:43 AM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> When selecting a rank in the combobox the rank shown below in the list is selected and shown...
Katja Luther
08:36 AM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Works correctly now except for 1 ope...
Katja Luther
05:32 PM bug #8936 (Feedback): Improve default distribution formatting
Andreas Müller
01:04 PM bug #8936: Improve default distribution formatting
In general I did not yet test other databases with status being shown. A reason was that I did not find the place whe... Andreas Müller
01:03 PM bug #8936: Improve default distribution formatting
Andreas Kohlbecker wrote:
> I changed the code a bit so that the item suffix is only added when there are not child-...
Andreas Müller
11:37 AM bug #8936: Improve default distribution formatting
AM:
wir arbeiten in diesem Release an der Optimierung des Verbreitungsstrings bezüglich Separatoren und Fußnoten. ...
Andreas Müller
11:16 AM bug #8936 (Resolved): Improve default distribution formatting
I changed the code a bit so that the item suffix is only added when there are not child-nodes.
Additionally, I als...
Andreas Kohlbecker
05:31 PM feature request #9780 (Closed): Split rank grex into grex (ICNCP) and grex (infraspec)
Reordering for existing terms will be done in #9784 Andreas Müller
05:28 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
CY (full, place published) and PY (fix merge with DA, year) fixed in #9786 Andreas Müller
05:26 PM feature request #9786 (Resolved): Implement tags CY and fix PY handling for RIS import
Applied in changeset commit:cdmlib|d457f5b7c2f642f4c600124e9905ea01255645b4. Andreas Müller
03:26 PM feature request #9786 (Closed): Implement tags CY and fix PY handling for RIS import
follow up for #6636
CY (Place published) is not yet handled.
PY handling has a bug and is not yet used therefor...
Andreas Müller
05:26 PM Revision d457f5b7 (cdmlib): fix #9786 implement CY and fix PY for RIS import (and fix Source handling for in-references)
Andreas Müller
05:16 PM Revision bb25976f (taxeditor): ref #9772: fix handling when more than 1 unit is choosable - continue
Katja Luther
04:22 PM Revision 49fee2fb (cdmlib): ref #9772: avoid another NPE
Katja Luther
03:21 PM Revision 638120c2 (taxeditor): ref 9762: adapt message when cultivar epithets are removed.
Katja Luther
02:56 PM Revision 9740c8f1 (cdmlib): Cleanup RIS and Endnote tests
Andreas Müller
02:43 PM bug #9772: Improve DTO usage for character matrix
Currently it looks like quantitative data characters which support >1 measurment units can not be opened in the popup... Andreas Müller
01:51 PM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> We will need an update script to try to update existing data (in greece-bupleurum there are ...
Andreas Müller
01:43 PM bug #9772: Improve DTO usage for character matrix
Katja Luther wrote:
> Andreas Müller wrote:
> > Values are not persisted when entered into a taxon description (lit...
Andreas Müller
11:15 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Values are not persisted when entered into a taxon description (literatur description or def...
Katja Luther
01:56 PM Revision 8b7732ac (taxeditor): ref #9772: fix handling when more than 1 unit is choosable - continue
Katja Luther
01:50 PM Revision 6bcb1685 (cdmlib): ref #9772: avoid NPE
Katja Luther
01:49 PM bug #9785 (In Progress): Update script for missing unit_ids (matrix)
for details see #9772#note-24
The problem existed already befor so there are lots of data with missing unit_id (e....
Andreas Müller
01:48 PM Revision 446189d9 (taxeditor): ref #9772: fix handling when more than 1 unit is choosable
Katja Luther
01:08 PM feature request #9778 (Closed): Add new rank terms lusus, subgrex and subproles
Andreas Müller
01:06 PM Revision f263ddd1 (cdmlib): ref #6387 add code validation for cultivar group epi
Andreas Müller
11:03 AM Revision cbefe788 (cdm-dataportal): ref #8936 item-suffix only when child-nodes exist
Andreas Kohlbecker
11:03 AM Revision c4f29439 (cdmlib): ref #9772: fix getting taxonRowWrapper - continue
Katja Luther
10:32 AM Revision e1fef636 (cdmlib): ref #9772: fix getting taxonRowWrapper
Katja Luther
10:29 AM bug #9477 (Resolved): New ordered terms do not have correct order index
before closing check on production if it worked correctly. I already tested locally.
~~~
SELECT id, dtb.orderInde...
Andreas Müller
10:26 AM bug #9784 (New): Update script for term order of ordered CDM terms
copied from #9477
Termloader is fixed now but we still need to update order for already existing term which were l...
Andreas Müller
10:22 AM Revision 749a2e19 (cdmlib): ref #9477 fix term loading for ordered new terms
Andreas Müller
09:45 AM Revision 0a5a166c (cdmlib): fix incorrect previousUpdater info in 5.27.0_5.27.1
Andreas Müller
09:23 AM Revision ab600885 (taxeditor): ref #9762: fix problems with rank combo and switch nomenclatural code
Katja Luther
09:02 AM Revision 0ea0fdd3 (cdmlib): ref #9762, ref #9755 Add nameCache annotation to cultivar fields
Andreas Müller
 

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