Activity
From 09/21/2021 to 10/20/2021
10/20/2021
- 04:46 PM bug #9819 (Resolved): Rename "Nameeditor" to "Taxon Editor" in menus
- Searched for all "Namenseditor" and "name editor" strings and replaced it by "taxon editor"/"Taxon Editor"
- 04:40 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
- This should be fixed, please review.
- 04:30 PM bug #9817 (Resolved): AggregationWizard: Changing the maxRank results in empty minRank
- Applied in changeset commit:taxeditor|9f84c59541baaae91592b1870fd11d5c802d68a8.
- 03:28 PM bug #9821 (Resolved): Description sources shown for description elements should not be editable
- This should be fixed. Please review.
- 12:49 PM bug #9821 (Closed): Description sources shown for description elements should not be editable
- Since #7774 sources for descriptions are shown in the details view for description elements.
However, they should no... - 01:18 PM feature request #9771: Implement Cdm2Cdm for vocabularies
- Note: in TaxEditor there is a first version for handling a second CdmServer at CdmServerInfo.getDevServerRemoteSource()
- 01:11 PM task #9822 (New): Improve performance for DDS aggregation
- e.g. by faster loading of data and by not reloading the full dataset after aggregation (there might be a ticket for t...
- 11:32 AM bug #9811 (Resolved): regression through removal of `TaxonRelationshipBeanProcessor` ?
- solved, see http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/search/results/taxon?ws=portal%2Ftaxo...
10/19/2021
- 03:23 PM bug #9818 (Resolved): Sources not visible for disabled DescriptionElements
- This should be fixed.
- 03:21 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
- I checked advance search on test servers and it works again: http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm...
- 03:19 PM bug #9806 (In Progress): Clones should not be editable in factual data view and elsewhere
- Now cloned descriptions are disabled like computed descriptions.
- 02:49 PM bug #9281 (Resolved): Set basionym not available for heterotypic synonyms after drag & drop
- This should be fixed, please review.
- 11:18 AM bug #9820 (New): OptionalDataException when saving character matrix
- After moving all used elements to Dtos the character matrix still needs a lot of time to start and sometimes an optio...
- 10:39 AM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- Katja Luther wrote:
> Actually maybe this was the wrong ticket because the exception coming up again was not an OutO...
10/18/2021
- 05:09 PM bug #8936: Improve default distribution formatting
- there was a problem with the release in the master branch, some commits have been lost. this is fixed and it is now t...
- 03:59 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
- this method is only used in the TaxEditor:
~~~
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor... - 02:09 PM bug #9814 (Feedback): Advanced search webservice for area throws NPE (mexico portal)
- I fixed the NPE so it does not throw an exception anymore. However, we need to discuss how the TermDTO should behave....
- 12:02 PM bug #9814: Advanced search webservice for area throws NPE (mexico portal)
- This is strange, the actual method getVocRepresentation_L10n_abbreviatedLabel() is never called in cdmlib so I don't ...
- 11:58 AM bug #9814 (Closed): Advanced search webservice for area throws NPE (mexico portal)
- ... Die Area-Terme in der Suche fehlen gerade komplett, das der Webservice nichts zurückliefert: https://132.248.13.8...
- 03:07 PM bug #9819 (Closed): Rename "Nameeditor" to "Taxon Editor" in menus
- follow up for #9744
Currently the "open in" context menu still uses Nameeditor.
Please also check for other occ... - 02:23 PM bug #9818 (Closed): Sources not visible for disabled DescriptionElements
- The sources of disabled description elements are not expandable but should.
- 02:02 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
- Actually maybe this was the wrong ticket because the exception coming up again was not an OutOfMemoryException but an...
- 01:51 PM bug #8783 (Feedback): Massive Heap consumption in server instance opening the Description-Matrix editor
- Was comment 16 ("changed from Closed to In Progress") a mistake, it completely misses any explanation?
I am assumin... - 12:54 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- If we reopen then we should adapt the milestone. But maybe it is better to keep this closed and create a new ticket a...
- 12:44 PM bug #8783 (In Progress): Massive Heap consumption in server instance opening the Description-Matrix editor
- 01:37 PM bug #9817: AggregationWizard: Changing the maxRank results in empty minRank
- This is a regression therefore setting to 5.28
- 01:12 PM bug #9817 (Closed): AggregationWizard: Changing the maxRank results in empty minRank
- mail AM:
wenn ich den max-Rank beim DDS Aggregationsdialog ändere wird immer der min-Rang auch gelöscht. Auch in F... - 01:10 PM bug #9816 (Closed): Implement correct handling of more than one element for a character
- Implement correct handling in the character matrix, if two or more elements exist for one character. If one of the el...
- 12:35 PM bug #9815 (Closed): When removing all elements of a description, the description disappears from factual data view, but still exist
- mail AM:
wenn ich mehrere Descriptions in eine merge im Facts View und somit eine volle und eine komplett leere üb... - 11:18 AM bug #398 (Worksforme): DIPTERA: Typestatus entered as Notes for NameTypes
- Ich glaube dieses Ticket können wir schließen.
Keinerlei Hinweise darauf, was gemacht wurde, daher WORKSFORME - 10:38 AM bug #9813 (New): Details view should be available for literature (and default) descriptions in character matrix
- this is a subticket #9799 but with highest priority as adding sources to literature descriptions is essential functi...
10/15/2021
- 07:27 PM feature request #6387 (Closed): [Rule] Rank rule for CultivarPlantNames
- Added a level 2 rule that checks if cultivar (ICNCP) names have a cultivar rank.
Of course there could be much mor... - 05:55 PM bug #9785 (In Progress): Update script for missing measurment unit_ids (matrix)
- The above update should run with error recovery to avoid a break in update if the SQL fails (especially for non-MySQL)
- 05:53 PM bug #9785: Update script for missing measurment unit_ids (matrix)
- Some search SQL:
~~~sql
SELECT deb.id, fe.id, fe.titleCache -- , COUNT(*) AS n
FROM DescriptionElementBase deb... - 05:52 PM bug #9785: Update script for missing measurment unit_ids (matrix)
- An Update for MySQL:
~~~
UPDATE DescriptionElementBase deb LEFT OUTER JOIN DefinedTermBase fe ON fe.id = deb.feat... - 04:14 PM bug #9477 (Closed): New ordered terms do not have correct order index
- 04:10 PM feature request #8979 (Closed): Prevent misuse of field initial for personal names
- 12:05 PM feature request #8979: Prevent misuse of field initial for personal names
- In Vaadin perfectly implemented there 100%, but did not check the TaxEditor if it is there relevant.
- 04:09 PM task #9308 (Closed): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- 11:33 AM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- Task is perfectly implemented, ticket can be closed.
- 04:06 PM bug #8936: Improve default distribution formatting
- It looks item suffix is currently not yet handled correctly in Drupal Code.
Example from mexico flora: https://13... - 12:17 PM bug #9812 (Closed): Display of scientific name in the list-view of Vaadin
- As of 15 Oct 2021 scientific names (Vaadin release system) are displayed mainly without blanks between genus, species...
- 11:59 AM feature request #7640 (Closed): Update ISO country names where necessary
- 11:49 AM feature request #7640: Update ISO country names where necessary
- I am happy with the implementation, short names and it is clear which country is meant. Tested it in Vaadin, release ...
10/13/2021
- 03:22 PM bug #9797 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- new ticket for the open issue #9811
- 03:22 PM bug #9811 (Closed): regression through removal of `TaxonRelationshipBeanProcessor` ?
- It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture502-1.pn...
10/12/2021
- 05:45 PM task #9123 (Closed): Fix BigDecimal algebra in aggregation algorithms
- Moved polytomous key handling to new ticket #9810
- 05:35 PM task #9810 (New): Test if BigDecimal algebra is correct in PolytomousKey algorithms
- copied from #9123 and #8978
Aggregation is checked and fixed in the meanwhile (#9123) - 05:31 PM feature request #9798 (Closed): Import Spanish representations for countries
- 04:02 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture143-1.pn... - 02:25 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- There are still problems with loading MAN, e.g. https://europlusmed.org/cdm_dataportal/search/results/taxon?ws=portal...
- 02:37 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
- 02:30 PM bug #9808 (Resolved): option to disable ssl/tsl certificate validation of the cdm webserver
- Applied in changeset commit:cdm-dataportal|91313ab4c0d34ddd9d9c745e268b16c4eefe234b.
- 02:29 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
- in situations when a self signed certificate is being used with the cdmserver it is needed to disable certificate val...
- 02:37 PM feature request #9786 (Closed): Implement tags CY and fix PY handling for RIS import
- This should work as tests exist. If there are open issues we should add them to #9809
- 02:35 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
- Generally this works. However, there are a couple of open issues handled in #9809.
- 02:34 PM feature request #9809: Implement further tags for RIS reference import
- NaK:
Nur bei Book Chapters funktioniert der Import nur teilweise, dafür muss man ja das Buch separat anlegen und d... - 02:31 PM feature request #9809 (New): Implement further tags for RIS reference import
- in #6636 and #9786 the most important tags for RIS import have been implemented. However, there are a couple of more ...
10/11/2021
- 09:55 PM feature request #6818: Default Image Viewer: setting to enable display of 'Media Representations'
- According to commit this was fixed in 4.9
- 09:49 PM bug #7979: Registration date and time, display
- Can we adapt milestone or remove it?
- 09:46 PM bug #4721 (Feedback): RestServices for list methods return error when index is out of range
- Is this still an open issue? The above link seems to return a correct empty list now.
- 09:10 PM bug #3635: Protologue media should also be displayed when mime type is missing
- is this still an open issue?
- 09:08 PM bug #3511: errors are not cleared after reloading the configuration
- is this still an open issue?
- 08:52 PM bug #2592 (Worksforme): InvalidDataAccessApiUsageException when saving description scope
- I could save a scope for a description now so I guess this issue is solved in the meanwhile.
- 08:15 PM bug #5484 (Worksforme): Connecting to local H2 via local Mgd throws NPE in CdmServiceCacher
- I cannot reproduce therefore close as worksforme
- 08:14 PM bug #5485 (Duplicate): h2 database connection fails if datasource view is open
- This is either fixed already or will be fixed once #9742 is fixed. I tested with a workaround using AUTO_SERVER=TRUE
- 08:01 PM feature request #9771 (In Progress): Implement Cdm2Cdm for vocabularies
- 05:05 PM bug #9807: Matrix should not collapse after aggregation
- AM 2021-10-1:
... Wir müssten also entweder doch herausfinden, woran es liegt, dass diese zusätzlichen Knoten ents... - 04:57 PM bug #9807 (Closed): Matrix should not collapse after aggregation
- As the refresh after aggregation lead to row duplications (of taxa and maybe others) it was temporarily implemented i...
- 04:37 PM feature request #8706 (Closed): taxeditor error report with timestamps
- I guess we can close this ticket. Timestamping generally works. Open new ticket if there are open issues left.
- 04:34 PM feature request #8467 (Closed): Save a "snapshot" of the SpecimenDescriptions used for aggregation
- This for me seems to be fixed. Open issue on visibility of clones moved to new ticket #9806
- 04:32 PM bug #9806: Clones should not be editable in factual data view and elsewhere
- AM: (2021-10-7)
Descriptions Clones, die an Specimens oder auch Taxa hängen sind derzeit noch normal bearbeitbar.
... - 04:31 PM bug #9806 (Closed): Clones should not be editable in factual data view and elsewhere
- copied from #8467:
Currently only aggregated data are not editable (depending on configuration). Also cloned data ... - 04:04 PM feature request #7981 (Closed): Add configuration UI for matrix description aggregation
- I created a ticket for old and new open issues: #9805
- 04:03 PM feature request #9805 (New): Open issues for DDS aggregation dialogue
- copied from #7981
- ~~aggregating full dataset does not work~~ (#9803)
- ~~matrix should not collapse after aggre... - 03:30 PM feature request #7980 (Closed): Enhance matrix description aggregation
- 03:27 PM feature request #7980: Enhance matrix description aggregation
- open issues moved to #9804
- 03:27 PM feature request #9804 (New): Further enhance description aggregation
- copied from #7980
- consider default values during aggregation
- deal with outliers etc.
- improve error and ... - 02:33 PM feature request #9795 (Closed): Add literature descriptions to matrix aggregation
- 02:32 PM bug #9803: Aggregating full dataset does not work
- Related to this I found that there is redundancy in the code. This lead to a failing fix for the rank handling as it ...
- 12:53 PM bug #9803 (Closed): Aggregating full dataset does not work
- Choosing "Aggregate all taxa of the descriptive datase" currently does not work.
This is because the dataset varia... - 11:24 AM bug #9802 (New): Label for min=max does not unify values in Matrix QuantitativeData label provider
- e.g. I get [987-987] instead.
Also the unit is missing.
In general we should try to unify the matrix label with...
10/08/2021
- 09:18 PM bug #9801 (New): Orphan removal does not work correctly for CdmLinkSource
- as part of OriginalSourceBase. As it is 1:1 the mapping should be done the other way round to make orphan removal wor...
10/07/2021
- 01:50 AM feature request #9795 (Resolved): Add literature descriptions to matrix aggregation
- this is probably fully resolved
- 01:49 AM task #8871 (In Progress): Remaining issues to unify description aggregation methods
10/06/2021
- 11:31 AM bug #9510 (In Progress): Improve label for descriptions created via DDS matrix
- 11:26 AM feature request #9511 (Resolved): Move specimens/individual associations for matrix into same description
- This seems to be fixed in the meanwhile. Can you please double check and if true close the ticket?
If you find the... - 09:26 AM bug #6523: Correct display of misspellings in synonymy
- another example case from the carypophyllales portal:
----
ich habe eben gesehen, dass die misspellings im Po...
10/05/2021
- 01:35 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Can you please also leave a note which model objects have been replaced by this ticket?
>
... - 01:21 PM bug #9772 (Resolved): Improve DTO usage for character matrix
- Code cleaning done for TaxonNodeService/Dao and DescriptiveDatasetService.
- 10:54 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Please check also if code is clean. E.g. I found DescriptiveDatasetService.getDescriptiveDat... - 08:45 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Same in TaxonNodeServiceImpl.getTaxonNodeDtos().
>
> By the way I wonder if all these HQL... - 09:40 AM bug #9800 (In Progress): Open issues for character matrix
- * implement the details view again to be able to edit some more advanced data like the modifiers. This worked in earl...
- 09:40 AM bug #9799 (New): Details view should be available for character matrix
- Implement the details view again to be able to edit some more advanced data like the modifiers. This worked in earlie...
- 09:30 AM bug #9073 (Worksforme): Configuring the matrix view throws HTTP invoker exception
- could not reproduce this anymore, so close this ticket.
- 09:20 AM bug #8243: Cdm Cache uses a lot of disk space
- We should have a look on this with the new implementation because the matrix worked with descriptions and descriptive...
- 08:56 AM bug #9074: Specimen missing a collector + n° and missing a collection identifier (Barcode, Accession number) not identifiable in descriptive Matrix
- With the actual implementation the "collector & nr" field is always filled, if a field unit with collector and collec...
10/04/2021
- 04:34 PM bug #9772: Improve DTO usage for character matrix
- Same in TaxonNodeServiceImpl.getTaxonNodeDtos().
By the way I wonder if all these HQL statements are necessary. Ha... - 04:23 PM bug #9772: Improve DTO usage for character matrix
- Please check also if code is clean. E.g. I found DescriptiveDatasetService.getDescriptiveDataSetDtoByUuid() which inc...
- 04:01 PM bug #9772: Improve DTO usage for character matrix
- Can you also check for other open matrix tickets and add the new tag "matrix" to them so we can check for all open ma...
- 03:52 PM bug #9772: Improve DTO usage for character matrix
- Generally we can close this ticket.
- 03:52 PM bug #9772: Improve DTO usage for character matrix
- Can you please also leave a note which model objects have been replaced by this ticket?
And can you check the (new... - 03:50 PM bug #9772: Improve DTO usage for character matrix
- This generally seems to work now as expected.
I guess we need to create a couple of follow-up tickets. I could thi... - 02:24 PM bug #9772: Improve DTO usage for character matrix
- Some more tests (with Lactucinae):
found two issues, both are already fixed:
* avoid NPE for quantitative data ... - 11:33 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Adding a new literature to a taxon does show the taxon row 2x if a specimen description for ... - 11:30 AM bug #9772 (Feedback): Improve DTO usage for character matrix
- Adding a new literature to a taxon does show the taxon row 2x if a specimen description for this taxon existed before...
- 03:35 PM bug #9796 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- the changes seem to solve the initialization problems without noticeable side-effects.
- 01:52 PM bug #9797 (Resolved): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
10/01/2021
- 10:32 AM feature request #9798: Import Spanish representations for countries
- Import is prepared but still needs to run after the next release
- 10:07 AM feature request #9798 (Resolved): Import Spanish representations for countries
- Applied in changeset commit:cdmlib-apps|9920661b646173b407c80a48fba951c648f011fc.
- 09:32 AM feature request #9798 (Closed): Import Spanish representations for countries
- We can use the same code as for the German/Latin ranks written for edaphobase.
- 08:56 AM bug #9797 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- eg:
http://localhost:8080/portal/taxon/b384de9c-0a70-48e9-8fcc-1f772a331544.json
http://int.e-taxonomy.eu/cd...
09/30/2021
- 02:03 PM bug #9630: Make the handling of computed description configurable
- Added check whether a d&d target is a computed description.
- 12:44 PM bug #9772 (Resolved): Improve DTO usage for character matrix
- There are still two UI issues, the color of the field where a default description exists, changes (of the color) are ...
- 09:56 AM bug #9772 (In Progress): Improve DTO usage for character matrix
- 09:56 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Katja Luther wrote:
> > need to be tested:
>
> what does this mean? Did you test it or i... - 09:35 AM bug #9772: Improve DTO usage for character matrix
- Katja Luther wrote:
> need to be tested:
what does this mean? Did you test it or is it still to be done?
- 09:17 AM bug #9772: Improve DTO usage for character matrix
- need to be tested:
* add new specimen, add character data -> save , add more character data -> save -> check for d...
09/29/2021
- 04:11 PM bug #9796 (Resolved): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- 03:51 PM bug #9796: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- this is related to the changes made for #9433 ( commit:40708c6 )
- 03:13 PM bug #9796 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
- eg:
http://test.e-taxonomy.eu/cdmserver/euromed/portal/taxon/e1688082-958a-4787-9afa-f46297920eee.json
htt... - 03:46 PM feature request #8713 (Closed): Improve structured descriptive data aggregation
- remaining issues handled in #7980
- 02:40 PM task #9123: Fix BigDecimal algebra in aggregation algorithms
- Rounding in aggregation is now done using MathContext.DECIMAL32 and stripTrailingZeros(). This avoids rounding errors...
- 11:49 AM task #9123 (In Progress): Fix BigDecimal algebra in aggregation algorithms
- There is a problem with average computing in aggregation. RoundingMode is missing.
Once this is fixed we need to che...
09/28/2021
- 11:21 PM feature request #9795 (In Progress): Add literature descriptions to matrix aggregation
- 11:19 PM feature request #9795 (Closed): Add literature descriptions to matrix aggregation
- copied from #7980
- 01:31 PM bug #9794 (Closed): external-links: World Flora Online link template improved
- done!
- 01:19 PM bug #9794 (Closed): external-links: World Flora Online link template improved
- the external link to World Flora Online results in a too unspecific search and returns far too many results.
Eckha... - 11:36 AM discussion #9793 (New): webservice versioning strategy
- see
https://dzone.com/articles/rest-api-versioning-strategies-1 - 11:14 AM task #9792 (Closed): remove ePic from ext-links
- 10:52 AM task #9792 (Closed): remove ePic from ext-links
- ePIC is gone:
"The requested resource
/searchepic/summaryquery.do
is no longer available on this server and th... - 10:50 AM bug #8936 (Closed): Improve default distribution formatting
- done
- 09:50 AM bug #9791 (New): Handle differing media meta data and informations in DB
- If media data of a media differs from the data in DB, we need a refresh button and a warning that the informations ar...
- 09:28 AM feature request #9054: Allow adding taxon descriptions to matrix for taxa which have no specimen descriptions attached yet
- As we are currently working on the matrix/additivity issues and as the Borsch workshop is coming closer we should try...
- 09:27 AM bug #9790 (Closed): Remove source mode "highest Status" from DDS Aggregation
- I tested in TaxEditor and it works as expected.
09/27/2021
- 05:27 PM bug #8936: Improve default distribution formatting
- Andreas Kohlbecker wrote:
> please can you clarify what exactly the conclusion is that results from the discussion i... - 04:41 PM bug #8936: Improve default distribution formatting
- please can you clarify what exactly the conclusion is that results from the discussion in comment #8936#note-19?
- 03:59 PM bug #9781: Merge of QuantitativeData or CategoricalData from Character Matrix should not create new records
- KL:
Das passiert im RowWrapper (setDataValueForQuantitativeData()) - 03:38 PM bug #9790 (Resolved): Remove source mode "highest Status" from DDS Aggregation
- Applied in changeset commit:cdmlib|ef92e1f650be6328f4e3d5b466169ce0f32c1d9d.
- 03:37 PM bug #9790 (Closed): Remove source mode "highest Status" from DDS Aggregation
- only highest status (or "OnlySameValue") should for now not be available for Descriptive Dataset aggregation.
We n... - 10:07 AM bug #9789 (New): Missing configurator when deleting a classification
- Similar to the deletion of nodes we need a configuration wizard for classifications.
09/24/2021
- 07:28 PM feature request #7275 (In Progress): [DISCUSS] Require email address for Users
- 07:26 PM feature request #7276 (In Progress): Make User.email a unique field.
- AM:
Eigentlich dachte ich ja wir können sie als rejected schließen. Aber das Thema uniquenes ist natürlich schon k... - 05:58 PM feature request #9788 (New): Add full stop at the end of bibliographic reference citations in dataportal
- AM:
zum Punkt hinter den Quellen: ich kann mich hier nicht mehr genau an die Entwicklung erinnern, aber ich glaube... - 05:54 PM bug #8936: Improve default distribution formatting
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > The issue in #note-19 is still open. The suggestion is to rem... - 01:46 PM bug #8936: Improve default distribution formatting
- Andreas Müller wrote:
> The issue in #note-19 is still open. The suggestion is to remove Space and use Komma+Space i... - 01:38 PM bug #8936 (Feedback): Improve default distribution formatting
- The issue in #note-19 is still open. The suggestion is to remove Space and use Komma+Space instead for Level-0 item g...
- 01:31 PM bug #8936 (Resolved): Improve default distribution formatting
- 1. I adapted the setting of the cuba test portal, so that it conforms to the production portal, the setting are now ...
- 01:53 PM feature request #9787 (New): option to show external kml layers in the taxon/specimen page
- Hello Andreas and Raúl,
[Raúl: I intercalated some questions below]
I had asked Raúl your question about the ma... - 01:30 PM bug #9762 (Closed): Handle cultivars correctly in TaxEditor
- This seems to be fully fixed now.
- 11:57 AM bug #9762 (Feedback): Handle cultivars correctly in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > There is a single issue left. When switching back from ICNCP to ICN... - 11:47 AM bug #9772 (Resolved): Improve DTO usage for character matrix
- All open issues are fixed. Only new issue is the NPE when opening the aggregation. I will check this once the editor ...
- 08:21 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Currently it looks like quantitative data characters which support >1 measurment units can n...
09/23/2021
- 05:52 PM feature request #6640: Integrate RIS Import in taxEditor
- KL 2017-05-12 (not sure if still an open issue):
der Ris Import funktioniert jetzt bei mir lokal im Editor.
Den ... - 05:42 PM bug #9762 (Resolved): Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> There is a single issue left. When switching back from ICNCP to ICNAFP there comes a warning... - 01:29 PM bug #9762: Handle cultivars correctly in TaxEditor
- There is a single issue left. When switching back from ICNCP to ICNAFP there comes a warning like:
![](picture728-... - 01:17 PM bug #9762: Handle cultivars correctly in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > When selecting a rank in the combobox the rank shown below in the l... - 01:15 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> Ok, I found it. Fields that update the nameCache need an annotation @CacheUpdate("nameCache"... - 09:03 AM bug #9762: Handle cultivars correctly in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Andreas Müller wrote:
> > > > Works c... - 08:43 AM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> When selecting a rank in the combobox the rank shown below in the list is selected and shown... - 08:36 AM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Works correctly now except for 1 ope... - 05:32 PM bug #8936 (Feedback): Improve default distribution formatting
- 01:04 PM bug #8936: Improve default distribution formatting
- In general I did not yet test other databases with status being shown. A reason was that I did not find the place whe...
- 01:03 PM bug #8936: Improve default distribution formatting
- Andreas Kohlbecker wrote:
> I changed the code a bit so that the item suffix is only added when there are not child-... - 11:37 AM bug #8936: Improve default distribution formatting
- AM:
wir arbeiten in diesem Release an der Optimierung des Verbreitungsstrings bezüglich Separatoren und Fußnoten. ... - 11:16 AM bug #8936 (Resolved): Improve default distribution formatting
- I changed the code a bit so that the item suffix is only added when there are not child-nodes.
Additionally, I als... - 05:31 PM feature request #9780 (Closed): Split rank grex into grex (ICNCP) and grex (infraspec)
- Reordering for existing terms will be done in #9784
- 05:28 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
- CY (full, place published) and PY (fix merge with DA, year) fixed in #9786
- 05:26 PM feature request #9786 (Resolved): Implement tags CY and fix PY handling for RIS import
- Applied in changeset commit:cdmlib|d457f5b7c2f642f4c600124e9905ea01255645b4.
- 03:26 PM feature request #9786 (Closed): Implement tags CY and fix PY handling for RIS import
- follow up for #6636
CY (Place published) is not yet handled.
PY handling has a bug and is not yet used therefor... - 02:43 PM bug #9772: Improve DTO usage for character matrix
- Currently it looks like quantitative data characters which support >1 measurment units can not be opened in the popup...
- 01:51 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> We will need an update script to try to update existing data (in greece-bupleurum there are ... - 01:43 PM bug #9772: Improve DTO usage for character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > Values are not persisted when entered into a taxon description (lit... - 11:15 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Values are not persisted when entered into a taxon description (literatur description or def... - 01:49 PM bug #9785 (Closed): Update script for missing measurment unit_ids (matrix)
- for details see #9772#note-24
The problem existed already befor so there are lots of data with missing unit_id (e.... - 01:08 PM feature request #9778 (Closed): Add new rank terms lusus, subgrex and subproles
- 10:29 AM bug #9477 (Resolved): New ordered terms do not have correct order index
- before closing check on production if it worked correctly. I already tested locally.
~~~
SELECT id, dtb.orderInde... - 10:26 AM bug #9784 (New): Update script for term order of ordered CDM terms
- copied from #9477
Termloader is fixed now but we still need to update order for already existing term which were l...
09/22/2021
- 08:02 PM bug #8936 (Feedback): Improve default distribution formatting
- For a portal showing also the status in the distribution string this does not look so well yet
![](picture714-1.pn... - 06:44 PM bug #9772: Improve DTO usage for character matrix
- Values are not persisted when entered into a taxon description (literatur description or default description). Or may...
- 06:27 PM bug #9772 (Feedback): Improve DTO usage for character matrix
- 06:26 PM bug #9772: Improve DTO usage for character matrix
- If the unit is changed via the quantitative data editing dialog and persisted this change does not appear in the data...
- 06:22 PM bug #9772: Improve DTO usage for character matrix
- We will need an update script to try to update existing data (in greece-bupleurum there are 787 quantitative data wit...
- 11:29 AM bug #9772 (Resolved): Improve DTO usage for character matrix
- Save should not create new states or statistical values, but I think this is a new ticket because it is no regression...
- 09:03 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> The smv.type_id IS NULL issue seems to be solved now. But there is another critical issue: t... - 06:35 PM bug #9783 (New): When a new value is added to a quantitative data it should appear at the end
- currently it appears at the beginning. But this is only the case for the current editing. When a other value is added...
- 06:15 PM task #9782 (Closed): Adapt abbreviation and idInVoc for rank "proles"
- Checked result in updated database.
- 02:44 PM task #9782 (Resolved): Adapt abbreviation and idInVoc for rank "proles"
- 02:43 PM task #9782 (Closed): Adapt abbreviation and idInVoc for rank "proles"
- AM:
wie ist denn die übliche Formatierung bei proles /subproles. Bislang haben wir das als „prol.“, also abgekürzt... - 06:13 PM bug #9734 (Closed): Correct handling for secundum references when moving taxon to new parent
- Works as expected now
- 11:29 AM bug #9734 (Resolved): Correct handling for secundum references when moving taxon to new parent
- I will test again with nightly when the test server is available again
- 11:20 AM bug #9734: Correct handling for secundum references when moving taxon to new parent
- Tested locally (test server is unavailable):
pref: keepOrWarn
* if the secs the same -> ok
* if secs different -... - 04:58 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Works correctly now except for 1 open issue: if cultivar epithet ... - 04:56 PM bug #9762: Handle cultivars correctly in TaxEditor
- When changing back from ICNCP to ICNAFP the rank list is not updated.
Also the currently selected rank is not remove... - 04:52 PM bug #9762: Handle cultivars correctly in TaxEditor
- When selecting a rank in the combobox the rank shown below in the list is selected and shown afterwards. The selectio...
- 04:35 PM bug #9762 (Feedback): Handle cultivars correctly in TaxEditor
- There was also another NPE that I fixed (careful with name.getRank().doSomething() !!)
- 03:10 PM bug #9762 (Resolved): Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> >If ICNafp is selected do not show cultivar ranks
>
> I suggest to implement it like this... - 03:08 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> >If ICNafp is selected do not show cultivar ranks
>
> I suggest to implement it like this... - 03:08 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> This is decided now:
>
> * if "Grex (ICNCP)" is selected show "Cultivar Group"
this is... - 12:43 PM bug #9762: Handle cultivars correctly in TaxEditor
- >If ICNafp is selected do not show cultivar ranks
I suggest to implement it like this for now - 12:40 PM bug #9762: Handle cultivars correctly in TaxEditor
- This is decided now:
* if "Grex (ICNCP)" is selected show "Cultivar Group" - 12:38 PM bug #9762: Handle cultivars correctly in TaxEditor
- New requirement:
* Rename Cultivar Name to Cultivar Epithet and Cultivar Group to Cultivar Group Epi. (to make it ... - 09:58 AM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> There is the general issue that the details view does not update correctly when the nomencla... - 02:37 PM feature request #9755: Open issues for cultivar handling
- AM
Denomination class:
Verstehe ich es richtig, dass das in der Regel Taxa vom Rang „Genus“ sind, und in seltenen... - 02:33 PM feature request #9755: Open issues for cultivar handling
- AM:
Verwendung von nom. Author and nom. Ref. (und evtl. andere Zusätze):
Article 28.2 verstehe ich so, dass ein A... - 02:22 PM feature request #9755 (In Progress): Open issues for cultivar handling
- The important issues have been fixed with 5.27 mostly using separate tickets.
- 02:35 PM feature request #9757: Make cultivars, cultivar groups and grexes parsable
- AM:
Arti. 21.18 nennt die erlaubten Zeichen für Kultivar-Epithete. Gelten diese Zeichen auch für Gruppen bzw. für ... - 02:30 PM feature request #6387 (Resolved): [Rule] Rank rule for CultivarPlantNames
- 01:24 PM feature request #6387: [Rule] Rank rule for CultivarPlantNames
- We will not handle convar. as cultivar rank.
WGB:
ja, ich würde convar. pragmatisch in die Liste der „alten bot... - 01:44 PM bug #9781 (New): Merge of QuantitativeData or CategoricalData from Character Matrix should not create new records
- Actually every merge of already existing but updated character data creates new states/statistical values and removes...
- 12:47 PM feature request #9754 (Closed): Adapt cache strategy to support cultivar names
- 12:26 PM feature request #9780 (Resolved): Split rank grex into grex (ICNCP) and grex (infraspec)
- 12:25 PM feature request #9780 (Closed): Split rank grex into grex (ICNCP) and grex (infraspec)
- AM:
wir haben in letzter Zeit versucht das Handling (Parsen, Formattieren, Handling im TaxEditor) von Kultivaren e... - 12:13 PM feature request #9778 (Resolved): Add new rank terms lusus, subgrex and subproles
- 10:43 AM feature request #9778 (Closed): Add new rank terms lusus, subgrex and subproles
- About lusus:
Rangstufen: Die untenstehenden „Ränge“ fehlen in der normalen Tabelle („sublusus“ haben wir z.B.)... - 11:25 AM bug #9779 (New): Exception when override db preference
- copied from #9739:
When trying to override preference common name language via local settings I get:
~~~
org.e... - 11:22 AM bug #9739 (Closed): Add common name languages preference to DB preferences
- create new ticket with the exception of comment 13
- 10:29 AM task #8392 (Worksforme): Types in PhycoBank
- 08:32 AM task #8392 (Resolved): Types in PhycoBank
- The displayed data are as expected. All issues are solved. The ticket can be closed.
09/21/2021
- 11:14 PM bug #9772: Improve DTO usage for character matrix
- The smv.type_id IS NULL issue seems to be solved now. But there is another critical issue: the unit_id is often null ...
- 03:56 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> There seems to be another issue: when I change only 1 record 8 new records are added in the ... - 11:10 PM task #3346 (Resolved): Team.addListenerForTeamMember(Person member) adds idle listener
- 10:48 PM bug #9762: Handle cultivars correctly in TaxEditor
- There is the general issue that the details view does not update correctly when the nomenclatural code or ranks are c...
- 10:42 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> Works correctly now except for 1 open issue: if cultivar epithet or cultivar group are chang... - 10:40 PM bug #9762: Handle cultivars correctly in TaxEditor
- Works correctly now except for 1 open issue: if cultivar epithet or cultivar group are changed the name Cache and the...
- 10:20 PM feature request #9754: Adapt cache strategy to support cultivar names
- Only open issue is the correct handling of rank grex
- 01:57 PM feature request #9754 (Resolved): Adapt cache strategy to support cultivar names
- Not yet fully resolved but set to resolved to not forget
- 10:18 PM feature request #9757 (Closed): Make cultivars, cultivar groups and grexes parsable
- This should be fixed. Only correct usage of rank grex needs discussion but is handled in generell cultivar ticket #9755
- 01:56 PM feature request #9757 (Resolved): Make cultivars, cultivar groups and grexes parsable
- Not yet fully resolved but set to resolved to not forget
- 03:25 PM bug #825 (Closed): DefinedTermDaoImpl - missleading method names
- fully solved
- 03:18 PM bug #7904: DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
- ahh this was solved for Release 5.25
- 03:18 PM bug #7904 (Closed): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
- code looks good. I also tested with yourkit, ticket can be closed.
- 02:49 PM task #8392: Types in PhycoBank
- Hi Hennig It ink this is all solved now and we can close this ticket as "worksforme"
- 02:32 PM bug #9777 (New): TypeError: Argument 1 passed to cdm_tagged_text_add_options() in registration-search
- http://edit.test/d7/phycobank/cdm_dataportal/registration-search/filter?identifier=&taxon_name=Mi&reference_citation=...
- 02:16 PM feature request #9758 (Closed): EmailService implemented
- implemented, covered by integration tests and not causing problem in existing apps -> can be closed
- 02:05 PM task #8379 (Closed): Review strange specimen implementations
- 02:05 PM task #8379: Review strange specimen implementations
- final check successful, can be closed, moving to the milestone for which this has been fixed: Release 5.18
- 01:58 PM task #7099 (Closed): Make CdmAuthority a persistable class
- two more lines of doc and closing this ticket
- 01:07 PM task #7099 (Resolved): Make CdmAuthority a persistable class
- I added some javadoc. Please extend if you remember more details.
I implemented a first toString() method. Can be ... - 11:34 AM task #7099 (Feedback): Make CdmAuthority a persistable class
- the implementation looks good, I only got three opens points:
* Documentation is missing, I think only linking to ... - 01:56 PM feature request #9755 (Resolved): Open issues for cultivar handling
- Not yet fully resolved but set to resolved to not forget
- 01:35 PM bug #9740 (Worksforme): Adapt Motive(Motif) to Subject in data portal
- Ahh, sorry, this was a mistake from my side. It does not exist in the dataportals.
- 10:44 AM bug #9740 (Feedback): Adapt Motive(Motif) to Subject in data portal
- There is no such term in the dataportal code.
Please can you give an example for a dataportal page where this label ... - 11:41 AM bug #8429 (Closed): Rename DeterminationEvent_Reference.setOfReferences_id
- there are no indications of this problem in the log, so the issue is fixed for sure.
- 10:08 AM bug #8936 (Closed): Improve default distribution formatting
- As far as I remember the level-0 item glue ", " was needed in some cases where only one hierarchy level of area has ...
- 09:32 AM feature request #3630: Taxeditor should add mimetype of mediaRepresentations automatically
- As this is already partly implemented we probably only need to adapt the existing algorithm.
@Andreas K., as you h... - 09:25 AM task #2452 (Duplicate): Media entities and Webpages
- I think this is kind of a duplicate discussion of #9067. We decided there to keep the current data model and store me...
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