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From 09/16/2021 to 10/15/2021

10/15/2021

07:27 PM feature request #6387 (Closed): [Rule] Rank rule for CultivarPlantNames
Added a level 2 rule that checks if cultivar (ICNCP) names have a cultivar rank.
Of course there could be much mor...
Andreas Müller
07:25 PM Revision 64254a55 (cdmlib): ref 6387 add some first rules for rank<->code test (cont.)
Andreas Müller
07:10 PM Revision a01d2bd1 (cdmlib): ref 6387 add some first rules for rank<->code test
Andreas Müller
07:06 PM Revision 7828c44e (cdmlib): cleanup
Andreas Müller
05:55 PM bug #9785 (In Progress): Update script for missing unit_ids (matrix)
The above update should run with error recovery to avoid a break in update if the SQL fails (especially for non-MySQL) Andreas Müller
05:53 PM bug #9785: Update script for missing unit_ids (matrix)
Some search SQL:
~~~sql
SELECT deb.id, fe.id, fe.titleCache -- , COUNT(*) AS n
FROM DescriptionElementBase deb...
Andreas Müller
05:52 PM bug #9785: Update script for missing unit_ids (matrix)
An Update for MySQL:
~~~
UPDATE DescriptionElementBase deb LEFT OUTER JOIN DefinedTermBase fe ON fe.id = deb.feat...
Andreas Müller
04:14 PM bug #9477 (Closed): New ordered terms do not have correct order index
Andreas Müller
04:10 PM feature request #8979 (Closed): Prevent misuse of field initial for personal names
Andreas Müller
12:05 PM feature request #8979: Prevent misuse of field initial for personal names
In Vaadin perfectly implemented there 100%, but did not check the TaxEditor if it is there relevant. Wolf-Henning Kusber
04:09 PM task #9308 (Closed): Supress "designated by" reference in portal in registration ListView and Reg...
Andreas Müller
11:33 AM task #9308: Supress "designated by" reference in portal in registration ListView and Registration...
Task is perfectly implemented, ticket can be closed. Wolf-Henning Kusber
04:06 PM bug #8936: Improve default distribution formatting
It looks item suffix is currently not yet handled correctly in Drupal Code.
Example from mexico flora: https://13...
Andreas Müller
12:17 PM bug #9812 (Closed): Display of scientific name in the list-view of Vaadin
As of 15 Oct 2021 scientific names (Vaadin release system) are displayed mainly without blanks between genus, species... Wolf-Henning Kusber
11:59 AM feature request #7640 (Closed): Update ISO country names where necessary
Andreas Müller
11:49 AM feature request #7640: Update ISO country names where necessary
I am happy with the implementation, short names and it is clear which country is meant. Tested it in Vaadin, release ... Wolf-Henning Kusber

10/13/2021

03:22 PM bug #9797 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
new ticket for the open issue #9811 Andreas Kohlbecker
03:22 PM bug #9811 (Closed): regression through removal of `TaxonRelationshipBeanProcessor` ?
It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture502-1.pn...
Andreas Kohlbecker

10/12/2021

05:45 PM task #9123 (Closed): Fix BigDecimal algebra in aggregation algorithms
Moved polytomous key handling to new ticket #9810 Andreas Müller
05:35 PM task #9810 (New): Test if BigDecimal algebra is correct in PolytomousKey algorithms
copied from #9123 and #8978
Aggregation is checked and fixed in the meanwhile (#9123)
Andreas Müller
05:31 PM feature request #9798 (Closed): Import Spanish representations for countries
Andreas Müller
04:02 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
It seems as if the removal of the `TaxonRelationshipBeanProcessor` has caused this new problem
![](picture143-1.pn...
Andreas Kohlbecker
02:25 PM bug #9797: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
There are still problems with loading MAN, e.g. https://europlusmed.org/cdm_dataportal/search/results/taxon?ws=portal... Andreas Müller
02:52 PM Revision 29d0b0f6 (cdmlib-apps): some upgrade for BgbmInstancesUpdater
Andreas Müller
02:37 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
Andreas Kohlbecker
02:30 PM bug #9808 (Resolved): option to disable ssl/tsl certificate validation of the cdm webserver
Applied in changeset commit:cdm-dataportal|91313ab4c0d34ddd9d9c745e268b16c4eefe234b. Andreas Kohlbecker
02:29 PM bug #9808 (Closed): option to disable ssl/tsl certificate validation of the cdm webserver
in situations when a self signed certificate is being used with the cdmserver it is needed to disable certificate val... Andreas Kohlbecker
02:37 PM feature request #9786 (Closed): Implement tags CY and fix PY handling for RIS import
This should work as tests exist. If there are open issues we should add them to #9809 Andreas Müller
02:35 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
Generally this works. However, there are a couple of open issues handled in #9809. Andreas Müller
02:34 PM feature request #9809: Implement further tags for RIS reference import
NaK:
Nur bei Book Chapters funktioniert der Import nur teilweise, dafür muss man ja das Buch separat anlegen und d...
Andreas Müller
02:31 PM feature request #9809 (New): Implement further tags for RIS reference import
in #6636 and #9786 the most important tags for RIS import have been implemented. However, there are a couple of more ... Andreas Müller
02:31 PM Revision 17ed1083 (cdm-dataportal): Merge tag '5.27.1' into develop
tagging hfx release Andreas Kohlbecker
02:31 PM Revision 827c80d5 (cdm-dataportal): Merge branch 'hotfix/5.27.1'
Andreas Kohlbecker
02:31 PM Revision 2415b2e3 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
02:30 PM Revision 91313ab4 (cdm-dataportal): fix #9808 option to disable ssl cert validation
Andreas Kohlbecker
10:27 AM Revision 6b34400c (cdmlib): minor and cleanup
Andreas Müller

10/11/2021

09:55 PM feature request #6818: Default Image Viewer: setting to enable display of 'Media Representations'
According to commit this was fixed in 4.9 Andreas Müller
09:49 PM bug #7979: Registration date and time, display
Can we adapt milestone or remove it? Andreas Müller
09:46 PM bug #4721 (Feedback): RestServices for list methods return error when index is out of range
Is this still an open issue? The above link seems to return a correct empty list now. Andreas Müller
09:10 PM bug #3635: Protologue media should also be displayed when mime type is missing
is this still an open issue? Andreas Müller
09:08 PM bug #3511: errors are not cleared after reloading the configuration
is this still an open issue? Andreas Müller
08:52 PM bug #2592 (Worksforme): InvalidDataAccessApiUsageException when saving description scope
I could save a scope for a description now so I guess this issue is solved in the meanwhile. Andreas Müller
08:15 PM bug #5484 (Worksforme): Connecting to local H2 via local Mgd throws NPE in CdmServiceCacher
I cannot reproduce therefore close as worksforme Andreas Müller
08:14 PM bug #5485 (Duplicate): h2 database connection fails if datasource view is open
This is either fixed already or will be fixed once #9742 is fixed. I tested with a workaround using AUTO_SERVER=TRUE Andreas Müller
08:01 PM feature request #9771 (In Progress): Implement Cdm2Cdm for vocabularies
Andreas Müller
05:05 PM bug #9807: Matrix should not collapse after aggregation
AM 2021-10-1:
... Wir müssten also entweder doch herausfinden, woran es liegt, dass diese zusätzlichen Knoten ents...
Andreas Müller
04:57 PM bug #9807 (Closed): Matrix should not collapse after aggregation
As the refresh after aggregation lead to row duplications (of taxa and maybe others) it was temporarily implemented i... Andreas Müller
04:37 PM feature request #8706 (Closed): taxeditor error report with timestamps
I guess we can close this ticket. Timestamping generally works. Open new ticket if there are open issues left. Andreas Müller
04:34 PM feature request #8467 (Closed): Save a "snapshot" of the SpecimenDescriptions used for aggregation
This for me seems to be fixed. Open issue on visibility of clones moved to new ticket #9806 Andreas Müller
04:32 PM bug #9806: Clones should not be editable in factual data view and elsewhere
AM: (2021-10-7)
Descriptions Clones, die an Specimens oder auch Taxa hängen sind derzeit noch normal bearbeitbar.
...
Andreas Müller
04:31 PM bug #9806 (Closed): Clones should not be editable in factual data view and elsewhere
copied from #8467:
Currently only aggregated data are not editable (depending on configuration). Also cloned data ...
Andreas Müller
04:04 PM feature request #7981 (Closed): Add configuration UI for matrix description aggregation
I created a ticket for old and new open issues: #9805 Andreas Müller
04:03 PM feature request #9805 (New): Open issues for DDS aggregation dialogue
copied from #7981
- ~~aggregating full dataset does not work~~ (#9803)
- ~~matrix should not collapse after aggre...
Andreas Müller
03:30 PM feature request #7980 (Closed): Enhance matrix description aggregation
Andreas Müller
03:27 PM feature request #7980: Enhance matrix description aggregation
open issues moved to #9804 Andreas Müller
03:27 PM feature request #9804 (New): Further enhance description aggregation
copied from #7980
- consider default values during aggregation
- deal with outliers etc.
- improve error and ...
Andreas Müller
02:37 PM Revision 4fdc7952 (cdm-server): Merge branch 'release/5.27.0' into develop
jenkins
02:37 PM Revision ee86969f (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
02:36 PM Revision 0be21ca1 (cdm-server): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:36 PM Revision cc117ebd (cdm-webapp): Merge branch 'release/5.27.0' into develop
jenkins
02:36 PM Revision 4611dabe (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
02:35 PM Revision 1c9fea82 (cdm-webapp): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:35 PM Revision 2971458c (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.27.0
jenkins
02:33 PM feature request #9795 (Closed): Add literature descriptions to matrix aggregation
Andreas Müller
02:32 PM bug #9803: Aggregating full dataset does not work
Related to this I found that there is redundancy in the code. This lead to a failing fix for the rank handling as it ... Andreas Müller
12:53 PM bug #9803 (Closed): Aggregating full dataset does not work
Choosing "Aggregate all taxa of the descriptive datase" currently does not work.
This is because the dataset varia...
Andreas Müller
02:10 PM Revision 17e0ac1e (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
02:09 PM Revision 7bd11533 (taxeditor): Merge branch 'release/5.27.0' into develop
jenkins
02:09 PM Revision c89621ab (taxeditor): Merge branch 'release/5.27.0'
jenkins
02:07 PM Revision 9a47de32 (cdm-dataportal): Merge branch 'release/5.27.0' into develop
jenkins
02:07 PM Revision 1032dd43 (cdm-dataportal): updating poms for branch'release/5.27.0' with non-snapshot ve...
jenkins
02:06 PM Revision 0780d58d (cdm-vaadin): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
02:06 PM Revision 44c4fa25 (cdm-dataportal): release-preparation: production level css
jenkins
02:06 PM Revision e8da55e7 (cdm-vaadin): jenkins bumping cdmlib.version to 5.27.0
jenkins
02:06 PM Revision 0e3b1877 (cdmlib): Updating develop poms back to pre merge state
jenkins
02:06 PM Revision 295c852f (cdmlib): Merge branch 'master' into develop
jenkins
02:06 PM Revision afb06063 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
02:06 PM Revision dab26056 (cdmlib): Merge branch 'release/5.27.0'
jenkins
01:47 PM Revision 51bd4576 (cdmlib): updating poms for branch'release/5.27.0' with non-snapshot versions
jenkins
01:41 PM Revision 575a6bd5 (cdmlib-apps): ref #9778 adapt redlist import to new existing ranks lusus and s...
Andreas Müller
01:40 PM Revision dab55660 (cdmlib-apps): ref #9780 fix grex handling in some scripts
Andreas Müller
01:38 PM Revision ae1ae34c (cdmlib-apps): remove JvmLimitsException handling form EuroMedDistributionAggre...
Andreas Müller
01:03 PM Revision 48009893 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.27.0-S...
jenkins
01:03 PM Revision a95975ed (cdm-webapp): updating poms for 5.28.0-SNAPSHOT development
jenkins
01:03 PM Revision 9af719d8 (cdm-webapp): updating poms for 5.27.0 branch with snapshot versions
jenkins
01:03 PM Revision 01d670ed (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.28.0-S...
jenkins
01:01 PM Revision 70a62925 (cdm-vaadin): jenkins bumping cdmlib.version to 5.27.0-SNAPSHOT
jenkins
01:01 PM Revision 7cf401e1 (taxeditor): Updated version in pom / project files to taxeditor version : 5.28...
jenkins
01:01 PM Revision 47020ac1 (cdm-vaadin): updating poms for 5.28.0-SNAPSHOT development
jenkins
01:01 PM Revision 104bacb0 (cdm-vaadin): updating poms for 5.27.0 branch with snapshot versions
jenkins
01:01 PM Revision 2be1f4fa (taxeditor): Updated version in pom / project files to taxeditor version : 5.27...
jenkins
01:01 PM Revision 09f6d172 (cdm-vaadin): jenkins bumping cdmlib.version to 5.28.0-SNAPSHOT
jenkins
01:01 PM Revision 9bc9587a (cdm-server): updating poms for 5.28.0-SNAPSHOT development
jenkins
01:00 PM Revision f2fca10a (cdm-dataportal): updating poms for 5.28.0-SNAPSHOT development
jenkins
12:57 PM Revision 206c20c1 (cdmlib): updating poms for 5.28.0-SNAPSHOT development
jenkins
12:55 PM Revision bbcd0abb (taxeditor): ref #9803 better handling of redundant minMaxRank and geoFilter ha...
Andreas Müller
11:24 AM bug #9802 (New): Label for min=max does not unify values in Matrix QuantitativeData label provider
e.g. I get [987-987] instead.
Also the unit is missing.
In general we should try to unify the matrix label with...
Andreas Müller

10/08/2021

09:43 PM Revision f717518e (cdmlib): remove deprecated method
Andreas Müller
09:39 PM Revision 3c420001 (cdmlib): ref #9801, ref #7980, ref #8871 remove aggregated source descriptions...
Andreas Müller
09:18 PM bug #9801 (New): Orphan removal does not work correctly for CdmLinkSource
as part of OriginalSourceBase. As it is 1:1 the mapping should be done the other way round to make orphan removal wor... Andreas Müller
05:57 PM Revision c50ece59 (cdmlib): cleanup
Andreas Müller
04:05 PM Revision 1ac9cae7 (taxeditor): ref #7981: avoid NPE
Katja Luther
03:56 PM Revision a9b7ea5d (cdmlib): ref #9772 add deproxy to collector title computation
Andreas Müller
01:40 PM Revision 80bbeb1b (cdmlib): change line number for debugging
Andreas Müller
01:31 PM Revision 541ae6bc (cdmlib): ref #7980 fix concurrent modification exception
Andreas Müller
01:15 PM Revision e7e11b99 (taxeditor): set default for unpublished taxa to true
Katja Luther
01:06 PM Revision f11b2271 (taxeditor): set default sel in wizard to values in configurator
Katja Luther
01:04 PM Revision 843fbe64 (cdmlib): cleanup
Andreas Müller
01:04 PM Revision 7fee6b88 (cdmlib): ref #7980 fix NoSuchElement exception (cont.)
Andreas Müller
11:48 AM Revision 2374e385 (taxeditor): ref #7981: select configuration default values
Katja Luther
11:07 AM Revision 4ca90889 (cdmlib): ref #9772: adapt collectorstring, use collectorTitleCache
Katja Luther
10:42 AM Revision 305b0475 (taxeditor): statistical value details view should be disabled for computed desc
Katja Luther
10:30 AM Revision ef1a6397 (cdmlib): ref #7980 fix NoSuchElement exception
Andreas Müller

10/07/2021

12:02 AM Revision edfed83c (taxeditor): cleanup
Andreas Müller
11:57 PM Revision c978affc (taxeditor): cleanup
Andreas Müller
11:45 PM Revision a1417825 (taxeditor): cleanup
Andreas Müller
10:18 PM Revision 3194d52a (cdmlib): update Datasource script
Andreas Müller
08:44 PM Revision c0228744 (taxeditor): ref #7981 adapt label for aggregated taxa/subtrees
Andreas Müller
07:42 PM Revision 1a96d01d (cdmlib): ref #7980, ref #8871 improve error handling and verification in aggre...
Andreas Müller
06:32 PM Revision 293b1494 (cdmlib): cleanup, javadoc and minor
Andreas Müller
06:31 PM Revision bdd1b0c7 (cdmlib): ref #7980 fix aggregation for titleCache of reused descriptions
Andreas Müller
06:29 PM Revision 6ce5c551 (cdmlib): ref #7980 fix aggregation for measurement units (still open are not e...
Andreas Müller
06:26 PM Revision 74ccd9f4 (cdmlib): adapt dummy measurement unit to meter in test dataset
Andreas Müller
05:18 PM Revision cdcad85a (taxeditor): ref #7981: read aggSourceMode from configurator in aggregation wiz...
Andreas Müller
04:20 PM Revision 6b6b71cf (cdmlib): ref #7980 fix tests for aggregation source mode
Andreas Müller
03:58 PM Revision 469b4d69 (taxeditor): ref #7981: read aggSourceMode from configurator in aggregation wiz...
Andreas Müller
03:56 PM Revision f677247f (cdmlib): ref #7981, ref #7980, ref #8871 explicitly defined source modes for a...
Andreas Müller
03:55 PM Revision d98a1622 (cdmlib): javadoc
Andreas Müller
03:25 PM Revision a76ae357 (taxeditor): ref #7981: read aggSourceMode from configurator in aggregation wizard
Andreas Müller
03:24 PM Revision 583471b3 (taxeditor): cleanup
Andreas Müller
01:07 PM Revision b7ad4bb2 (cdmlib): some renaming
Andreas Müller
01:02 PM Revision 6163ee20 (cdmlib): ref #8871, ref #7980 handle aggregation source mode TAXON for toParent
Andreas Müller
11:04 AM Revision 82b18118 (cdmlib): ref #8871, ref #7980 handle aggregation source modes for SDD aggregation
Andreas Müller
10:26 AM Revision 472080b4 (taxeditor): ref #9772: fix doubled menu items
Katja Luther
10:04 AM Revision 7e1619ea (cdmlib): ref #8871, ref #7980 adapt available source modes for DDS aggregation
Andreas Müller
09:47 AM Revision 67c1a4e3 (taxeditor): sort taxon nodes in taxon filter of DDS editor
Katja Luther
02:10 AM Revision a4001175 (cdmlib): ref #8871 try to fix failing aggregation tests (cont.)
Andreas Müller

10/06/2021

01:50 AM feature request #9795 (Resolved): Add literature descriptions to matrix aggregation
this is probably fully resolved Andreas Müller
01:49 AM task #8871 (In Progress): Remaining issues to unify description aggregation methods
Andreas Müller
01:47 AM Revision bfbf1c9c (cdmlib): cleanup
Andreas Müller
01:46 AM Revision 67c26aa8 (cdmlib): ref #8871 try to fix failing aggregation tests
Andreas Müller
01:40 AM Revision 4b70788c (cdmlib): ref #8871, ref #9331 fix DescriptionElementSource.clone , e.g. for Di...
Andreas Müller
01:33 AM Revision f600798d (cdmlib): cleanup
Andreas Müller
10:13 PM Revision 98623528 (cdmlib): cleanup and minor
Andreas Müller
06:28 PM Revision 5f20c74a (cdmlib): ref #7980 delete not needed descriptions after aggregation
Andreas Müller
06:25 PM Revision 569f15d4 (cdmlib): fix problem with strange DefinedTermBase_InverseRepresentation_AUD1 m...
Andreas Müller
06:24 PM Revision 0e0fe1fb (cdmlib): cleanup and minor
Andreas Müller
06:21 PM Revision fe503ae0 (cdmlib): remove handling for not thrown exception JvmLimitsExceed
Andreas Müller
02:58 PM Revision 505cd4db (taxeditor): show all description elements in factual data view of taxa
Katja Luther
02:31 PM Revision ac67f386 (cdmlib): ref #7980 minor changes to aggregation tests
Andreas Müller
02:31 PM Revision 37cdc012 (cdmlib): ref #7980 reduce minFreeHeap for aggregation (cont.)
Andreas Müller
02:30 PM Revision c1c6c66e (cdmlib): cleanup
Andreas Müller
02:16 PM Revision 4296d7cb (cdmlib): ref #7980 reduce minFreeHeap for aggregation
Andreas Müller
01:40 PM Revision 120c4ab8 (taxeditor): default for availableForTaxa and availableForSpecimen set to true
Katja Luther
01:34 PM Revision c549e4d6 (taxeditor): add available for parts to character details
Katja Luther
12:08 PM Revision e8edefb2 (cdmlib): cleanup
Andreas Müller
12:08 PM Revision 5d1ef7fc (cdmlib): ref #9510 adapt specimens holding description label (cont. II)
Andreas Müller
11:31 AM bug #9510 (In Progress): Improve label for descriptions created via DDS matrix
Andreas Müller
11:29 AM Revision 7f25cd4e (cdmlib): ref #9510 adapt specimens holding description label (cont.)
Andreas Müller
11:28 AM Revision 24190230 (cdmlib): cleanup
Andreas Müller
11:26 AM feature request #9511 (Resolved): Move specimens/individual associations for matrix into same des...
This seems to be fixed in the meanwhile. Can you please double check and if true close the ticket?
If you find the...
Andreas Müller
11:06 AM Revision a5c8139e (cdmlib): cleanup and explicit title for IndividualsAssociation taxon descriptions
Andreas Müller
10:30 AM Revision a1a25627 (cdmlib): minor
Andreas Müller
09:26 AM bug #6523: Correct display of misspellings in synonymy
another example case from the carypophyllales portal:
----
ich habe eben gesehen, dass die misspellings im Po...
Andreas Kohlbecker

10/05/2021

11:54 PM Revision 310956ec (cdmlib): fix compile error and cleanup (cont.)
Andreas Müller
11:50 PM Revision b78fe281 (cdmlib): fix compile error and cleanup
Andreas Müller
11:36 PM Revision 12da0940 (cdmlib): cleanup
Andreas Müller
11:30 PM Revision 09b7d505 (cdmlib): ref #7980, ref #8871, ref #9795 fix source handling in StructuredDesc...
Andreas Müller
03:09 PM Revision 9b4330d1 (cdmlib): revert add supresswarning annotation
Katja Luther
02:39 PM Revision 06367522 (cdmlib): cleanup
Andreas Müller
02:39 PM Revision 8d87730d (cdmlib): fix compile error
Andreas Müller
02:01 PM Revision 44900eab (cdmlib): remove cloneNotSupportedException from DescriptionElementBase and som...
Andreas Müller
01:55 PM Revision 802b31bc (cdm-dataportal): avoiding usage of deprecated property determinedNames
Andreas Kohlbecker
01:46 PM Revision eb1d334b (cdmlib): code cleaning - continue
Katja Luther
01:35 PM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Can you please also leave a note which model objects have been replaced by this ticket?
>
...
Katja Luther
01:21 PM bug #9772 (Resolved): Improve DTO usage for character matrix
Code cleaning done for TaxonNodeService/Dao and DescriptiveDatasetService. Katja Luther
10:54 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Please check also if code is clean. E.g. I found DescriptiveDatasetService.getDescriptiveDat...
Katja Luther
08:45 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Same in TaxonNodeServiceImpl.getTaxonNodeDtos().
>
> By the way I wonder if all these HQL...
Katja Luther
01:28 PM Revision c6890f7a (cdmlib): code cleaning - continue
Katja Luther
01:17 PM Revision b3c135e2 (cdmlib): code cleaning
Katja Luther
01:15 PM Revision 128317f4 (cdmlib): code cleaning
Katja Luther
10:53 AM Revision 3ed10837 (cdmlib): ref #9772: code cleaning - move hql code to persistence
Katja Luther
09:57 AM Revision c61c9db0 (cdmlib): code cleaning, move hql queries to dao
Katja Luther
09:40 AM bug #9800 (In Progress): Open issues for character matrix
* implement the details view again to be able to edit some more advanced data like the modifiers. This worked in earl... Katja Luther
09:40 AM bug #9799 (New): Details view should be available for character matrix
Implement the details view again to be able to edit some more advanced data like the modifiers. This worked in earlie... Katja Luther
09:30 AM bug #9073 (Worksforme): Configuring the matrix view throws HTTP invoker exception
could not reproduce this anymore, so close this ticket. Katja Luther
09:20 AM bug #8243: Cdm Cache uses a lot of disk space
We should have a look on this with the new implementation because the matrix worked with descriptions and descriptive... Katja Luther
08:56 AM bug #9074: Specimen missing a collector + n° and missing a collection identifier (Barcode, Access...
With the actual implementation the "collector & nr" field is always filled, if a field unit with collector and collec... Katja Luther

10/04/2021

04:34 PM bug #9772: Improve DTO usage for character matrix
Same in TaxonNodeServiceImpl.getTaxonNodeDtos().
By the way I wonder if all these HQL statements are necessary. Ha...
Andreas Müller
04:23 PM bug #9772: Improve DTO usage for character matrix
Please check also if code is clean. E.g. I found DescriptiveDatasetService.getDescriptiveDataSetDtoByUuid() which inc... Andreas Müller
04:01 PM bug #9772: Improve DTO usage for character matrix
Can you also check for other open matrix tickets and add the new tag "matrix" to them so we can check for all open ma... Andreas Müller
03:52 PM bug #9772: Improve DTO usage for character matrix
Generally we can close this ticket. Andreas Müller
03:52 PM bug #9772: Improve DTO usage for character matrix
Can you please also leave a note which model objects have been replaced by this ticket?
And can you check the (new...
Andreas Müller
03:50 PM bug #9772: Improve DTO usage for character matrix
This generally seems to work now as expected.
I guess we need to create a couple of follow-up tickets. I could thi...
Andreas Müller
02:24 PM bug #9772: Improve DTO usage for character matrix
Some more tests (with Lactucinae):
found two issues, both are already fixed:
* avoid NPE for quantitative data ...
Katja Luther
11:33 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Adding a new literature to a taxon does show the taxon row 2x if a specimen description for ...
Andreas Müller
11:30 AM bug #9772 (Feedback): Improve DTO usage for character matrix
Adding a new literature to a taxon does show the taxon row 2x if a specimen description for this taxon existed before... Andreas Müller
04:25 PM Revision 4deab588 (cdmlib): cleanup
Andreas Müller
03:35 PM bug #9796 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
the changes seem to solve the initialization problems without noticeable side-effects.
Andreas Kohlbecker
02:53 PM Revision cbd2db51 (taxeditor): ref #7981: fix enable/disable in aggregation wizard
Katja Luther
02:44 PM Revision d10e83d5 (cdmlib): ref #9772 cleanup SpecimenOrObservationBaseDTO (cont.)
Andreas Müller
02:39 PM Revision 20baf421 (cdmlib): cleanup SpecimenOrObservationBaseDTO
Andreas Müller
02:12 PM Revision 0b54e3e1 (cdmlib): ref #7980, ref #8871 reuse description items for DDS aggregation
Andreas Müller
02:09 PM Revision 22f2a9b8 (cdmlib): cleanup
Andreas Müller
02:08 PM Revision 44ddcdb3 (taxeditor): ref #9772: check for changes before start aggregation
Katja Luther
02:06 PM Revision 11baea18 (cdmlib): ref #7980 remove multiple description items for same feature from reu...
Andreas Müller
01:52 PM bug #9797 (Resolved): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied na...
Andreas Kohlbecker
01:52 PM Revision c7378b10 (cdmlib): ref #9797 introducing TaxonAutoInitializer to init taxonNodes and ada...
Andreas Kohlbecker
01:52 PM Revision 19732d4e (cdmlib): ref #9797 disabling and deprecating TaxonRelationshipBeanProcessor
Andreas Kohlbecker
01:52 PM Revision 6f10f4a4 (cdmlib): ref #9797 comment on UNUSED TaxonNodeAutoInitializer
Andreas Kohlbecker
01:50 PM Revision 7eb8206e (cdmlib): ref #9797 Taxon.isMisapplicationOnly() as transient method
Andreas Kohlbecker
01:50 PM Revision 4bb63f91 (cdmlib): ref #9797 better trace logging for bean initialization
Andreas Kohlbecker
12:54 PM Revision 64e5bc9f (cdmlib): ref #9772: add collectors string with collector and collectorsnumber
Katja Luther
12:25 PM Revision 337fab7d (taxeditor): ref #9772: fix collector and number
Katja Luther
12:23 PM Revision e0bfdfcc (cdmlib): ref #9772: add collectors string with collector and collectorsnumber
Katja Luther
09:28 AM Revision bf9c6f71 (cdmlib): ref #7981: fix taxonnodeDto taxon titlecache
Katja Luther

10/02/2021

02:13 AM Revision dd94a952 (cdmlib): add CDMLINK to ClearDB_with_Terms_DataSet.xml
Andreas Müller

10/01/2021

12:18 AM Revision 0f720e98 (cdmlib): minor and cleanup
Andreas Müller
09:46 PM Revision 476ec51f (cdmlib): include taxon name in taxon node referencing objects formatter
Andreas Müller
07:26 PM Revision 2d5e8696 (cdmlib): fix compile error
Andreas Müller
07:15 PM Revision 36ccd41f (cdmlib): cleanup
Andreas Müller
06:15 PM Revision 405677c2 (taxeditor): ref #7981: indent added
Katja Luther
06:10 PM Revision b52812b1 (cdmlib): ref #7981: fix taxonnodeDto taxon titlecache
Katja Luther
05:51 PM Revision 52002b9b (taxeditor): ref #7981: improve aggregation ui
Katja Luther
05:41 PM Revision 6991db68 (taxeditor): disable 'use default descr' in aggreg config wizard
Katja Luther
04:24 PM Revision 405ec428 (taxeditor): ref #7981 update labels for aggregation filter selection
Andreas Müller
01:22 PM Revision 114b2aae (cdmlib): fix wrong parameters in taxonnodeDto in DDS Dto
Katja Luther
01:15 PM Revision e83d7600 (taxeditor): ref #7981 fix literature description default value handling
Andreas Müller
01:01 PM Revision f4bb39c6 (taxeditor): cleanup
Andreas Müller
01:01 PM Revision 8f7bd0a1 (taxeditor): ref #7981 improve publish, literature and default description hand...
Andreas Müller
01:01 PM Revision 6c5aa726 (taxeditor): ref #7981 move "Aggregate all taxa in descriptive dataset" to top
Andreas Müller
01:01 PM Revision e1834f73 (taxeditor): ref #7981 improve publish, literature and default description hand...
Andreas Müller
01:00 PM Revision e0142947 (taxeditor): cleanup
Andreas Müller
12:04 PM Revision 1f7cd5bd (taxeditor): set default values in aggregation conf wizard for the new attributes
Katja Luther
10:56 AM Revision f7186f68 (cdmlib): Simplify stateData comparator
Andreas Müller
10:44 AM Revision f33239f5 (cdmlib): fulfill compare contract for stateData comparator
Katja Luther
10:32 AM Revision 7398f69e (taxeditor): avoid NPEs
Katja Luther
10:32 AM feature request #9798: Import Spanish representations for countries
Import is prepared but still needs to run after the next release Andreas Müller
10:07 AM feature request #9798 (Resolved): Import Spanish representations for countries
Applied in changeset commit:cdmlib-apps|9920661b646173b407c80a48fba951c648f011fc. Andreas Müller
09:32 AM feature request #9798 (Closed): Import Spanish representations for countries
We can use the same code as for the German/Latin ranks written for edaphobase. Andreas Müller
10:17 AM Revision 317f174d (cdmlib): minor
Andreas Müller
10:17 AM Revision 1e12fcd5 (cdmlib): ref #9798 add Spanish country labels to term csv files
Andreas Müller
10:07 AM Revision 9920661b (cdmlib-apps): fix #9798 add activator for Spanish country representations
Andreas Müller
10:05 AM Revision 6efca48a (cdmlib-apps): cleanup
Andreas Müller
10:05 AM Revision c1a05f5d (cdmlib-apps): Adapt E+M aggregation activators to new AggregationMode.byXXX si...
Andreas Müller
09:51 AM Revision 114b1bfe (cdmlib): avoid NPE in state comparat
Katja Luther
09:39 AM Revision 61a16467 (taxeditor): add additional attributes to aggregation wizard
Katja Luther
09:34 AM Revision 526223e5 (cdmlib): cleanup
Andreas Müller
09:34 AM Revision 5cea4919 (cdmlib): ref #9798 make Spanish uuid public
Andreas Müller
09:24 AM Revision 2abccc58 (taxeditor): ref #7981 enable source modes for checked aggregation modes and so...
Andreas Müller
09:11 AM Revision 94dfa139 (cdmlib): sort states in aggregated descriptions on count - continue
Katja Luther
08:56 AM bug #9797 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
eg:
http://localhost:8080/portal/taxon/b384de9c-0a70-48e9-8fcc-1f772a331544.json
http://int.e-taxonomy.eu/cd...
Andreas Kohlbecker
08:48 AM Revision e2171f2a (cdmlib): sort states in aggregated descriptions on count
Katja Luther
08:42 AM Revision 8cb33c6c (taxeditor): javadoc
Andreas Müller

09/30/2021

06:35 PM Revision 838c7344 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
06:32 PM Revision 45140a15 (cdmlib): ref #9772: do not create empty elements in taxon descriptions
Katja Luther
05:49 PM Revision c9369579 (cdmlib): ref #9795 include literature aggregation by default
Andreas Müller
05:49 PM Revision ecaf2cf6 (cdmlib): cleanup
Andreas Müller
05:46 PM Revision 3b6350d6 (cdmlib): ref #7980 fix NPE for StateData having no state
Andreas Müller
05:46 PM Revision 1d1c2ae7 (cdmlib): ref #8871 remove isAggregateToHigherRanks from StructuredDescriptionA...
Andreas Müller
02:03 PM bug #9630: Make the handling of computed description configurable
Added check whether a d&d target is a computed description. Katja Luther
02:02 PM Revision 1df9cf60 (taxeditor): ref #9630: d&d should not allowed to a computed description if
Katja Luther
01:49 PM Revision 1475999b (taxeditor): ref #9772: revert some changes in l10n
Katja Luther
12:51 PM Revision 0e123335 (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxedito...
Katja Luther
12:50 PM Revision 4512ae1c (taxeditor): ref #9772: code cleaning
Katja Luther
12:44 PM bug #9772 (Resolved): Improve DTO usage for character matrix
There are still two UI issues, the color of the field where a default description exists, changes (of the color) are ... Katja Luther
09:56 AM bug #9772 (In Progress): Improve DTO usage for character matrix
Katja Luther
09:56 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Katja Luther wrote:
> > need to be tested:
>
> what does this mean? Did you test it or i...
Katja Luther
09:35 AM bug #9772: Improve DTO usage for character matrix
Katja Luther wrote:
> need to be tested:
what does this mean? Did you test it or is it still to be done?
Andreas Müller
09:17 AM bug #9772: Improve DTO usage for character matrix
need to be tested:
* add new specimen, add character data -> save , add more character data -> save -> check for d...
Katja Luther
12:04 PM Revision e3c9d137 (taxeditor): ref #7981 include unpublished to taxon filter (explicit checkbox i...
Andreas Müller
12:04 PM Revision ff7bfebe (taxeditor): ref #7981 fill DDS aggregation dialogue with correct values for ag...
Andreas Müller
12:04 PM Revision a89350b0 (taxeditor): fix potential NPE in AggregationConfigurationWizardPage
Andreas Müller
12:04 PM Revision 3e4d8bf8 (taxeditor): Cleanup aggregation handler
Andreas Müller
12:04 PM Revision 5a83898e (taxeditor): cleanup
Andreas Müller
10:51 AM Revision bb03a041 (taxeditor): ref #9772: redraw after literature desc creation and code cleaning
Katja Luther
10:40 AM Revision 926b7eda (cdmlib): ref #9772: continue solving problems with rowWrapper
Katja Luther
10:05 AM Revision bd94706c (cdmlib): ref #9772: fix problems with doubled states in literature descriptions
Katja Luther
08:01 AM Revision d70979a4 (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxedito...
Katja Luther
07:58 AM Revision a0914872 (taxeditor): ref #9772: fix problems with rowWrapper
Katja Luther
07:54 AM Revision 205624c1 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
07:53 AM Revision a0f0c203 (cdmlib): ref #9772: fix problems with rowWrapper
Katja Luther

09/29/2021

04:11 PM bug #9796 (Resolved): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied na...
Andreas Kohlbecker
03:51 PM bug #9796: LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
this is related to the changes made for #9433 ( commit:40708c6 ) Andreas Kohlbecker
03:13 PM bug #9796 (Closed): LazyInitializationException (LIE) on portal/taxon/{uuid} with misapplied names
eg:
http://test.e-taxonomy.eu/cdmserver/euromed/portal/taxon/e1688082-958a-4787-9afa-f46297920eee.json
htt...
Andreas Kohlbecker
04:03 PM Revision a1012824 (cdmlib): ref #9796, ref #9433 extending init strategy for related taxa
Andreas Kohlbecker
03:56 PM Revision c13b2469 (taxeditor): fix compile errors and cleanup
Andreas Müller
03:46 PM feature request #8713 (Closed): Improve structured descriptive data aggregation
remaining issues handled in #7980 Andreas Müller
03:38 PM Revision 8a6770d6 (cdmlib): ref #9795 evaluate includeLiterature
Andreas Müller
03:08 PM Revision 9341b749 (cdmlib): rename static AggregationMode methods
Andreas Müller
02:51 PM Revision 9c09a16e (cdmlib): minor
Andreas Müller
02:40 PM task #9123: Fix BigDecimal algebra in aggregation algorithms
Rounding in aggregation is now done using MathContext.DECIMAL32 and stripTrailingZeros(). This avoids rounding errors... Andreas Müller
11:49 AM task #9123 (In Progress): Fix BigDecimal algebra in aggregation algorithms
There is a problem with average computing in aggregation. RoundingMode is missing.
Once this is fixed we need to che...
Andreas Müller
02:32 PM Revision 003ae517 (cdmlib): minor
Andreas Müller
02:31 PM Revision b7cfb9fb (cdmlib): ref #9123 improve precision handling for average computing in DDS agg...
Andreas Müller
11:52 AM Revision b55fc921 (cdmlib): ref #9123 add rounding to average computing in DDS aggregation (not y...
Andreas Müller
10:02 AM Revision e55c87fd (cdmlib): ref #7980 add exception message to unhandled exception handling
Andreas Müller
10:00 AM Revision e176d33f (cdmlib): put failing test preliminary to ignore
Andreas Müller
10:00 AM Revision 058e1e67 (cdmlib): cleanup
Andreas Müller
09:54 AM Revision 02f22141 (taxeditor): ref #7981 try to handle exceptions in structured aggregation handler
Andreas Müller
09:52 AM Revision 9bd56314 (taxeditor): cleanup
Andreas Müller
09:04 AM Revision ef827ced (cdmlib): add stacktrace handling for StructuredDescriptionAggregationTest (cont.)
Andreas Müller
09:03 AM Revision c356f10f (cdmlib): cleanup UpdateResult
Andreas Müller
08:44 AM Revision db3f7e5d (cdmlib): add stacktrace handling for StructuredDescriptionAggregationTest
Andreas Müller

09/28/2021

11:21 PM feature request #9795 (In Progress): Add literature descriptions to matrix aggregation
Andreas Müller
11:19 PM feature request #9795 (Closed): Add literature descriptions to matrix aggregation
copied from #7980 Andreas Müller
11:21 PM Revision 7043c4ee (cdmlib): ref #9795 add literature descriptions to matrix aggregation
Andreas Müller
11:14 PM Revision 83efeb94 (cdmlib): minor issues for StructuredDescriptionAggregationTest
Andreas Müller
01:31 PM bug #9794 (Closed): external-links: World Flora Online link template improved
done! Andreas Kohlbecker
01:19 PM bug #9794 (Closed): external-links: World Flora Online link template improved
the external link to World Flora Online results in a too unspecific search and returns far too many results.
Eckha...
Andreas Kohlbecker
01:31 PM Revision 1272ab60 (cdm-dataportal): ref #9794 wfo link improved - update script
Andreas Kohlbecker
01:21 PM Revision eeb2bfe0 (cdm-dataportal): ref #9794 wfo link improved
Andreas Kohlbecker
11:36 AM task #9793 (New): webservice versioning strategy
see
https://dzone.com/articles/rest-api-versioning-strategies-1
Andreas Kohlbecker
11:17 AM Revision 310a5f85 (taxeditor): id column in specimen selection dialog smaller and moved
Katja Luther
11:14 AM task #9792 (Closed): remove ePic from ext-links
Andreas Kohlbecker
10:52 AM task #9792 (Closed): remove ePic from ext-links
ePIC is gone:
"The requested resource
/searchepic/summaryquery.do
is no longer available on this server and th...
Andreas Kohlbecker
11:13 AM Revision 2c63e9ba (cdm-dataportal): ref #9792 update script to remove epic from stored settings
Andreas Kohlbecker
10:54 AM Revision cf1b2853 (cdm-dataportal): ref #9792 removing ePIC from ext-links
Andreas Kohlbecker
10:50 AM bug #8936 (Closed): Improve default distribution formatting
done Andreas Kohlbecker
10:50 AM Revision a8b43555 (cdm-dataportal): ref #8936 new default for level-0 item_glue
Andreas Kohlbecker
09:50 AM bug #9791 (New): Handle differing media meta data and informations in DB
If media data of a media differs from the data in DB, we need a refresh button and a warning that the informations ar... Katja Luther
09:28 AM feature request #9054: Allow adding taxon descriptions to matrix for taxa which have no specimen ...
As we are currently working on the matrix/additivity issues and as the Borsch workshop is coming closer we should try... Andreas Müller
09:27 AM bug #9790 (Closed): Remove source mode "highest Status" from DDS Aggregation
I tested in TaxEditor and it works as expected. Andreas Müller

09/27/2021

05:27 PM bug #8936: Improve default distribution formatting
Andreas Kohlbecker wrote:
> please can you clarify what exactly the conclusion is that results from the discussion i...
Andreas Müller
04:41 PM bug #8936: Improve default distribution formatting
please can you clarify what exactly the conclusion is that results from the discussion in comment #8936#note-19?
Andreas Kohlbecker
03:59 PM bug #9781: Merge of QuantitativeData or CategoricalData from Character Matrix should not create n...
KL:
Das passiert im RowWrapper (setDataValueForQuantitativeData())
Andreas Müller
03:38 PM bug #9790 (Resolved): Remove source mode "highest Status" from DDS Aggregation
Applied in changeset commit:cdmlib|ef92e1f650be6328f4e3d5b466169ce0f32c1d9d. Andreas Müller
03:37 PM bug #9790 (Closed): Remove source mode "highest Status" from DDS Aggregation
only highest status (or "OnlySameValue") should for now not be available for Descriptive Dataset aggregation.
We n...
Andreas Müller
03:38 PM Revision ef92e1f6 (cdmlib): fix #9790 remove highest status only for DDS source aggregation
Andreas Müller
10:07 AM bug #9789 (New): Missing configurator when deleting a classification
Similar to the deletion of nodes we need a configuration wizard for classifications. Katja Luther
09:51 AM Revision 7c78e6e0 (taxeditor): change color for overridden values
Katja Luther

09/24/2021

07:28 PM feature request #7275 (In Progress): [DISCUSS] Require email address for Users
Andreas Müller
07:26 PM feature request #7276 (In Progress): Make User.email a unique field.
AM:
Eigentlich dachte ich ja wir können sie als rejected schließen. Aber das Thema uniquenes ist natürlich schon k...
Andreas Müller
05:58 PM feature request #9788 (New): Add full stop at the end of bibliographic reference citations in dat...
AM:
zum Punkt hinter den Quellen: ich kann mich hier nicht mehr genau an die Entwicklung erinnern, aber ich glaube...
Andreas Müller
05:54 PM bug #8936: Improve default distribution formatting
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > The issue in #note-19 is still open. The suggestion is to rem...
Andreas Müller
01:46 PM bug #8936: Improve default distribution formatting
Andreas Müller wrote:
> The issue in #note-19 is still open. The suggestion is to remove Space and use Komma+Space i...
Andreas Kohlbecker
01:38 PM bug #8936 (Feedback): Improve default distribution formatting
The issue in #note-19 is still open. The suggestion is to remove Space and use Komma+Space instead for Level-0 item g... Andreas Müller
01:31 PM bug #8936 (Resolved): Improve default distribution formatting
1. I adapted the setting of the cuba test portal, so that it conforms to the production portal, the setting are now ... Andreas Kohlbecker
02:49 PM Revision ae115efe (cdmlib): code cleaning
Katja Luther
01:53 PM feature request #9787 (New): option to show external kml layers in the taxon/specimen page
Hello Andreas and Raúl,
[Raúl: I intercalated some questions below]
I had asked Raúl your question about the ma...
Andreas Kohlbecker
01:30 PM bug #9762 (Closed): Handle cultivars correctly in TaxEditor
This seems to be fully fixed now. Andreas Müller
11:57 AM bug #9762 (Feedback): Handle cultivars correctly in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > There is a single issue left. When switching back from ICNCP to ICN...
Andreas Müller
12:05 PM Revision 4451d6c9 (taxeditor): ref #9762: adapt l18n strings
Katja Luther
11:47 AM bug #9772 (Resolved): Improve DTO usage for character matrix
All open issues are fixed. Only new issue is the NPE when opening the aggregation. I will check this once the editor ... Andreas Müller
08:21 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Currently it looks like quantitative data characters which support >1 measurment units can n...
Katja Luther
11:39 AM Revision 41fe4def (taxeditor): ref #9772: avoid NPE in aggregation handler - continue
Katja Luther
11:12 AM Revision 2c37ed60 (taxeditor): ref #9772: avoid NPE in aggregation handler
Katja Luther
09:56 AM Revision e719e550 (cdmlib): ref #9772: fix problems with more than one description for one taxon
Katja Luther

09/23/2021

05:52 PM feature request #6640: Integrate RIS Import in taxEditor
KL 2017-05-12 (not sure if still an open issue):
der Ris Import funktioniert jetzt bei mir lokal im Editor.
Den ...
Andreas Müller
05:42 PM bug #9762 (Resolved): Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> There is a single issue left. When switching back from ICNCP to ICNAFP there comes a warning...
Katja Luther
01:29 PM bug #9762: Handle cultivars correctly in TaxEditor
There is a single issue left. When switching back from ICNCP to ICNAFP there comes a warning like:
![](picture728-...
Andreas Müller
01:17 PM bug #9762: Handle cultivars correctly in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > When selecting a rank in the combobox the rank shown below in the l...
Andreas Müller
01:15 PM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> Ok, I found it. Fields that update the nameCache need an annotation @CacheUpdate("nameCache"...
Andreas Müller
09:03 AM bug #9762: Handle cultivars correctly in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Andreas Müller wrote:
> > > > Works c...
Andreas Müller
08:43 AM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> When selecting a rank in the combobox the rank shown below in the list is selected and shown...
Katja Luther
08:36 AM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Works correctly now except for 1 ope...
Katja Luther
05:32 PM bug #8936 (Feedback): Improve default distribution formatting
Andreas Müller
01:04 PM bug #8936: Improve default distribution formatting
In general I did not yet test other databases with status being shown. A reason was that I did not find the place whe... Andreas Müller
01:03 PM bug #8936: Improve default distribution formatting
Andreas Kohlbecker wrote:
> I changed the code a bit so that the item suffix is only added when there are not child-...
Andreas Müller
11:37 AM bug #8936: Improve default distribution formatting
AM:
wir arbeiten in diesem Release an der Optimierung des Verbreitungsstrings bezüglich Separatoren und Fußnoten. ...
Andreas Müller
11:16 AM bug #8936 (Resolved): Improve default distribution formatting
I changed the code a bit so that the item suffix is only added when there are not child-nodes.
Additionally, I als...
Andreas Kohlbecker
05:31 PM feature request #9780 (Closed): Split rank grex into grex (ICNCP) and grex (infraspec)
Reordering for existing terms will be done in #9784 Andreas Müller
05:28 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
CY (full, place published) and PY (fix merge with DA, year) fixed in #9786 Andreas Müller
05:26 PM feature request #9786 (Resolved): Implement tags CY and fix PY handling for RIS import
Applied in changeset commit:cdmlib|d457f5b7c2f642f4c600124e9905ea01255645b4. Andreas Müller
03:26 PM feature request #9786 (Closed): Implement tags CY and fix PY handling for RIS import
follow up for #6636
CY (Place published) is not yet handled.
PY handling has a bug and is not yet used therefor...
Andreas Müller
05:26 PM Revision d457f5b7 (cdmlib): fix #9786 implement CY and fix PY for RIS import (and fix Source hand...
Andreas Müller
05:16 PM Revision bb25976f (taxeditor): ref #9772: fix handling when more than 1 unit is choosable - continue
Katja Luther
04:22 PM Revision 49fee2fb (cdmlib): ref #9772: avoid another NPE
Katja Luther
03:21 PM Revision 638120c2 (taxeditor): ref 9762: adapt message when cultivar epithets are removed.
Katja Luther
02:56 PM Revision 9740c8f1 (cdmlib): Cleanup RIS and Endnote tests
Andreas Müller
02:43 PM bug #9772: Improve DTO usage for character matrix
Currently it looks like quantitative data characters which support >1 measurment units can not be opened in the popup... Andreas Müller
01:51 PM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> We will need an update script to try to update existing data (in greece-bupleurum there are ...
Andreas Müller
01:43 PM bug #9772: Improve DTO usage for character matrix
Katja Luther wrote:
> Andreas Müller wrote:
> > Values are not persisted when entered into a taxon description (lit...
Andreas Müller
11:15 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Values are not persisted when entered into a taxon description (literatur description or def...
Katja Luther
01:56 PM Revision 8b7732ac (taxeditor): ref #9772: fix handling when more than 1 unit is choosable - continue
Katja Luther
01:50 PM Revision 6bcb1685 (cdmlib): ref #9772: avoid NPE
Katja Luther
01:49 PM bug #9785 (In Progress): Update script for missing unit_ids (matrix)
for details see #9772#note-24
The problem existed already befor so there are lots of data with missing unit_id (e....
Andreas Müller
01:48 PM Revision 446189d9 (taxeditor): ref #9772: fix handling when more than 1 unit is choosable
Katja Luther
01:08 PM feature request #9778 (Closed): Add new rank terms lusus, subgrex and subproles
Andreas Müller
01:06 PM Revision f263ddd1 (cdmlib): ref #6387 add code validation for cultivar group epi
Andreas Müller
11:03 AM Revision cbefe788 (cdm-dataportal): ref #8936 item-suffix only when child-nodes exist
Andreas Kohlbecker
11:03 AM Revision c4f29439 (cdmlib): ref #9772: fix getting taxonRowWrapper - continue
Katja Luther
10:32 AM Revision e1fef636 (cdmlib): ref #9772: fix getting taxonRowWrapper
Katja Luther
10:29 AM bug #9477 (Resolved): New ordered terms do not have correct order index
before closing check on production if it worked correctly. I already tested locally.
~~~
SELECT id, dtb.orderInde...
Andreas Müller
10:26 AM bug #9784 (New): Update script for term order of ordered CDM terms
copied from #9477
Termloader is fixed now but we still need to update order for already existing term which were l...
Andreas Müller
10:22 AM Revision 749a2e19 (cdmlib): ref #9477 fix term loading for ordered new terms
Andreas Müller
09:45 AM Revision 0a5a166c (cdmlib): fix incorrect previousUpdater info in 5.27.0_5.27.1
Andreas Müller
09:23 AM Revision ab600885 (taxeditor): ref #9762: fix problems with rank combo and switch nomenclatural code
Katja Luther
09:02 AM Revision 0ea0fdd3 (cdmlib): ref #9762, ref #9755 Add nameCache annotation to cultivar fields
Andreas Müller

09/22/2021

08:02 PM bug #8936 (Feedback): Improve default distribution formatting
For a portal showing also the status in the distribution string this does not look so well yet
![](picture714-1.pn...
Andreas Müller
07:03 PM Revision cff67eb2 (cdmlib): ref #9778, ref #9782 fix parsing for (sub)proles
Andreas Müller
06:44 PM bug #9772: Improve DTO usage for character matrix
Values are not persisted when entered into a taxon description (literatur description or default description). Or may... Andreas Müller
06:27 PM bug #9772 (Feedback): Improve DTO usage for character matrix
Andreas Müller
06:26 PM bug #9772: Improve DTO usage for character matrix
If the unit is changed via the quantitative data editing dialog and persisted this change does not appear in the data... Andreas Müller
06:22 PM bug #9772: Improve DTO usage for character matrix
We will need an update script to try to update existing data (in greece-bupleurum there are 787 quantitative data wit... Andreas Müller
11:29 AM bug #9772 (Resolved): Improve DTO usage for character matrix
Save should not create new states or statistical values, but I think this is a new ticket because it is no regression... Katja Luther
09:03 AM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> The smv.type_id IS NULL issue seems to be solved now. But there is another critical issue: t...
Katja Luther
06:35 PM bug #9783 (New): When a new value is added to a quantitative data it should appear at the end
currently it appears at the beginning. But this is only the case for the current editing. When a other value is added... Andreas Müller
06:15 PM task #9782 (Closed): Adapt abbreviation and idInVoc for rank "proles"
Checked result in updated database. Andreas Müller
02:44 PM task #9782 (Resolved): Adapt abbreviation and idInVoc for rank "proles"
Andreas Müller
02:43 PM task #9782 (Closed): Adapt abbreviation and idInVoc for rank "proles"
AM:
wie ist denn die übliche Formatierung bei proles /subproles. Bislang haben wir das als „prol.“, also abgekürzt...
Andreas Müller
06:13 PM bug #9734 (Closed): Correct handling for secundum references when moving taxon to new parent
Works as expected now Andreas Müller
11:29 AM bug #9734 (Resolved): Correct handling for secundum references when moving taxon to new parent
I will test again with nightly when the test server is available again Katja Luther
11:20 AM bug #9734: Correct handling for secundum references when moving taxon to new parent
Tested locally (test server is unavailable):
pref: keepOrWarn
* if the secs the same -> ok
* if secs different -...
Katja Luther
05:57 PM Revision 2f1d896d (cdmlib): ref #9757 add test for parsing into existing name
Andreas Müller
05:56 PM Revision de0abe03 (cdmlib): ref #9754 fix tests
Andreas Müller
05:32 PM Revision 1c0ec33b (cdmlib): ref #9754 fix appended phrase handling in cultivar formatter (cont.)
Andreas Müller
05:26 PM Revision b58adaec (cdmlib): ref #9754 fix appended phrase handling in cultivar formatter
Andreas Müller
04:58 PM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > Works correctly now except for 1 open issue: if cultivar epithet ...
Andreas Müller
04:56 PM bug #9762: Handle cultivars correctly in TaxEditor
When changing back from ICNCP to ICNAFP the rank list is not updated.
Also the currently selected rank is not remove...
Andreas Müller
04:52 PM bug #9762: Handle cultivars correctly in TaxEditor
When selecting a rank in the combobox the rank shown below in the list is selected and shown afterwards. The selectio... Andreas Müller
04:35 PM bug #9762 (Feedback): Handle cultivars correctly in TaxEditor
There was also another NPE that I fixed (careful with name.getRank().doSomething() !!) Andreas Müller
03:10 PM bug #9762 (Resolved): Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> >If ICNafp is selected do not show cultivar ranks
>
> I suggest to implement it like this...
Katja Luther
03:08 PM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> >If ICNafp is selected do not show cultivar ranks
>
> I suggest to implement it like this...
Katja Luther
03:08 PM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> This is decided now:
>
> * if "Grex (ICNCP)" is selected show "Cultivar Group"
this is...
Katja Luther
12:43 PM bug #9762: Handle cultivars correctly in TaxEditor
>If ICNafp is selected do not show cultivar ranks
I suggest to implement it like this for now
Andreas Müller
12:40 PM bug #9762: Handle cultivars correctly in TaxEditor
This is decided now:
* if "Grex (ICNCP)" is selected show "Cultivar Group"
Andreas Müller
12:38 PM bug #9762: Handle cultivars correctly in TaxEditor
New requirement:
* Rename Cultivar Name to Cultivar Epithet and Cultivar Group to Cultivar Group Epi. (to make it ...
Andreas Müller
09:58 AM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> There is the general issue that the details view does not update correctly when the nomencla...
Katja Luther
04:48 PM Revision d0deb3b0 (cdmlib): ref #9755 add DENOMINATIONCLASS to isCultivar()
Andreas Müller
04:26 PM Revision d29fd8e4 (taxeditor): ref #9762 fix NPE in cultivar handling
Andreas Müller
03:09 PM Revision 7a2e68e9 (taxeditor): ref #9762: smaller changes for cultivar names
Katja Luther
02:58 PM Revision df18f369 (cdmlib): ref #9782 adapt abbreviation for proles - adapt tests
Andreas Müller
02:44 PM Revision 35146960 (cdmlib): ref #9782 adapt abbreviation for proles
Andreas Müller
02:37 PM feature request #9755: Open issues for cultivar handling
AM
Denomination class:
Verstehe ich es richtig, dass das in der Regel Taxa vom Rang „Genus“ sind, und in seltenen...
Andreas Müller
02:33 PM feature request #9755: Open issues for cultivar handling
AM:
Verwendung von nom. Author and nom. Ref. (und evtl. andere Zusätze):
Article 28.2 verstehe ich so, dass ein A...
Andreas Müller
02:22 PM feature request #9755 (In Progress): Open issues for cultivar handling
The important issues have been fixed with 5.27 mostly using separate tickets. Andreas Müller
02:35 PM feature request #9757: Make cultivars, cultivar groups and grexes parsable
AM:
Arti. 21.18 nennt die erlaubten Zeichen für Kultivar-Epithete. Gelten diese Zeichen auch für Gruppen bzw. für ...
Andreas Müller
02:30 PM feature request #6387 (Resolved): [Rule] Rank rule for CultivarPlantNames
Andreas Müller
01:24 PM feature request #6387: [Rule] Rank rule for CultivarPlantNames
We will not handle convar. as cultivar rank.
WGB:
ja, ich würde convar. pragmatisch in die Liste der „alten bot...
Andreas Müller
02:29 PM Revision f112ee1f (cdmlib): fix CdmUpdater to correct version
Andreas Müller
02:14 PM Revision dacb2825 (cdmlib): ref #9755 update script for grex infraspec. representation
Andreas Müller
02:05 PM Revision af10946c (cdmlib): ref #6387 test that convar is not a cultivar
Andreas Müller
02:04 PM Revision 9752a045 (cdmlib): ref #9771Additional ignore on seupClass, just in case
Andreas Müller
01:44 PM bug #9781 (New): Merge of QuantitativeData or CategoricalData from Character Matrix should not cr...
Actually every merge of already existing but updated character data creates new states/statistical values and removes... Katja Luther
01:19 PM Revision 24d1dcbf (taxeditor): ref #9762: remove cultivar ranks for non cultivar codes and use is...
Katja Luther
01:18 PM Revision 6a5d2783 (taxeditor): ref #9734: add missing brackets to condition
Katja Luther
12:47 PM feature request #9754 (Closed): Adapt cache strategy to support cultivar names
Andreas Müller
12:45 PM Revision bd349938 (cdmlib): ref #9771 first incomplete version of Cdm2CdmVocabularyImport (cont.)
Andreas Müller
12:26 PM feature request #9780 (Resolved): Split rank grex into grex (ICNCP) and grex (infraspec)
Andreas Müller
12:25 PM feature request #9780 (Closed): Split rank grex into grex (ICNCP) and grex (infraspec)
AM:
wir haben in letzter Zeit versucht das Handling (Parsen, Formattieren, Handling im TaxEditor) von Kultivaren e...
Andreas Müller
12:20 PM Revision 6825968d (cdmlib): cleanup
Andreas Müller
12:19 PM Revision 8876144e (cdmlib): ref #9771 first incomplete version of Cdm2CdmVocabularyImport
Andreas Müller
12:13 PM feature request #9778 (Resolved): Add new rank terms lusus, subgrex and subproles
Andreas Müller
10:43 AM feature request #9778 (Closed): Add new rank terms lusus, subgrex and subproles
About lusus:
Rangstufen: Die untenstehenden „Ränge“ fehlen in der normalen Tabelle („sublusus“ haben wir z.B.)...
Andreas Müller
12:04 PM Revision 9585c46e (cdmlib): ref #9778, ref #9755, ref #9754, ref # 9757 split grex and add new ra...
Andreas Müller
11:25 AM bug #9779 (New): Exception when override db preference
copied from #9739:
When trying to override preference common name language via local settings I get:
~~~
org.e...
Katja Luther
11:22 AM bug #9739 (Closed): Add common name languages preference to DB preferences
create new ticket with the exception of comment 13 Katja Luther
10:34 AM Revision f73004b4 (taxeditor): ref #9734: adapt message
Katja Luther
10:29 AM task #8392 (Worksforme): Types in PhycoBank
Andreas Kohlbecker
08:32 AM task #8392 (Resolved): Types in PhycoBank
The displayed data are as expected. All issues are solved. The ticket can be closed. Wolf-Henning Kusber
09:11 AM Revision 7a8c920c (cdmlib): ref #9772: fix missing unit
Katja Luther

09/21/2021

11:14 PM bug #9772: Improve DTO usage for character matrix
The smv.type_id IS NULL issue seems to be solved now. But there is another critical issue: the unit_id is often null ... Andreas Müller
03:56 PM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> There seems to be another issue: when I change only 1 record 8 new records are added in the ...
Katja Luther
11:10 PM task #3346 (Resolved): Team.addListenerForTeamMember(Person member) adds idle listener
Andreas Müller
10:48 PM bug #9762: Handle cultivars correctly in TaxEditor
There is the general issue that the details view does not update correctly when the nomenclatural code or ranks are c... Andreas Müller
10:42 PM bug #9762: Handle cultivars correctly in TaxEditor
Andreas Müller wrote:
> Works correctly now except for 1 open issue: if cultivar epithet or cultivar group are chang...
Andreas Müller
10:40 PM bug #9762: Handle cultivars correctly in TaxEditor
Works correctly now except for 1 open issue: if cultivar epithet or cultivar group are changed the name Cache and the... Andreas Müller
10:44 PM Revision d5fbdca7 (cdmlib): ref #9754 handle infraspecific epithets better
Andreas Müller
10:20 PM feature request #9754: Adapt cache strategy to support cultivar names
Only open issue is the correct handling of rank grex Andreas Müller
01:57 PM feature request #9754 (Resolved): Adapt cache strategy to support cultivar names
Not yet fully resolved but set to resolved to not forget Andreas Müller
10:18 PM feature request #9757 (Closed): Make cultivars, cultivar groups and grexes parsable
This should be fixed. Only correct usage of rank grex needs discussion but is handled in generell cultivar ticket #9755 Andreas Müller
01:56 PM feature request #9757 (Resolved): Make cultivars, cultivar groups and grexes parsable
Not yet fully resolved but set to resolved to not forget Andreas Müller
10:10 PM Revision 9d8aa1aa (cdmlib): ref #9754 handle null values for cultivar epis better
Andreas Müller
09:52 PM Revision fe699834 (cdmlib): cleanup
Andreas Müller
08:59 PM Revision 12ffe453 (cdmlib): ref #9757 fix emptying name before parsing
Andreas Müller
08:41 PM Revision 11fb1cef (taxeditor): ref #9762 fix NPE in cultivar handling
Andreas Müller
08:05 PM Revision c03313e2 (cdmlib): ref #9757 fix cultivar parser test
Andreas Müller
07:56 PM Revision ad3aa7ba (cdmlib): ref #9754 support author and nom. ref. handling for cultivar formatting
Andreas Müller
07:33 PM Revision 446e5712 (cdmlib): ref #9757 improve cultivar parser
* parse with referencedName()
* include author parsing
* include nom. ref. parsing
Andreas Müller
07:33 PM Revision 26a096a2 (cdmlib): cleanup
Andreas Müller
04:02 PM Revision 2966c278 (cdmlib): ref #9772: smaller changes
Katja Luther
03:42 PM Revision 83db01f8 (cdmlib): ref #9772: deproxy the term in getTermByClassAndUUID
Katja Luther
03:25 PM bug #825 (Closed): DefinedTermDaoImpl - missleading method names
fully solved Andreas Kohlbecker
03:18 PM bug #7904: DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary...
ahh this was solved for Release 5.25 Andreas Kohlbecker
03:18 PM bug #7904 (Closed): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates ...
code looks good. I also tested with yourkit, ticket can be closed. Andreas Kohlbecker
02:49 PM task #8392: Types in PhycoBank
Hi Hennig It ink this is all solved now and we can close this ticket as "worksforme" Andreas Kohlbecker
02:32 PM bug #9777 (New): TypeError: Argument 1 passed to cdm_tagged_text_add_options() in registration-se...
http://edit.test/d7/phycobank/cdm_dataportal/registration-search/filter?identifier=&taxon_name=Mi&reference_citation=... Andreas Kohlbecker
02:16 PM feature request #9758 (Closed): EmailService implemented
implemented, covered by integration tests and not causing problem in existing apps -> can be closed Andreas Kohlbecker
02:05 PM task #8379 (Closed): Review strange specimen implementations
Andreas Kohlbecker
02:05 PM task #8379: Review strange specimen implementations
final check successful, can be closed, moving to the milestone for which this has been fixed: Release 5.18 Andreas Kohlbecker
01:58 PM task #7099 (Closed): Make CdmAuthority a persistable class
two more lines of doc and closing this ticket Andreas Kohlbecker
01:07 PM task #7099 (Resolved): Make CdmAuthority a persistable class
I added some javadoc. Please extend if you remember more details.
I implemented a first toString() method. Can be ...
Andreas Müller
11:34 AM task #7099 (Feedback): Make CdmAuthority a persistable class
the implementation looks good, I only got three opens points:
* Documentation is missing, I think only linking to ...
Andreas Kohlbecker
01:57 PM Revision a15be025 (cdmlib): ref #7099 documentation on the intendet purpose of CdmAuthority
Andreas Kohlbecker
01:56 PM feature request #9755 (Resolved): Open issues for cultivar handling
Not yet fully resolved but set to resolved to not forget Andreas Müller
01:35 PM bug #9740 (Worksforme): Adapt Motive(Motif) to Subject in data portal
Ahh, sorry, this was a mistake from my side. It does not exist in the dataportals. Andreas Müller
10:44 AM bug #9740 (Feedback): Adapt Motive(Motif) to Subject in data portal
There is no such term in the dataportal code.
Please can you give an example for a dataportal page where this label ...
Andreas Kohlbecker
01:04 PM Revision b4a56647 (cdmlib): ref #7099 javadoc added to CdmAuthority
Andreas Müller
12:44 PM Revision 73e39cab (cdmlib): ref #7099 implement toString and isEqual for CdmAuthority
Andreas Müller
12:30 PM Revision 55d06011 (cdmlib): cleanup
Andreas Müller
11:41 AM bug #8429 (Closed): Rename DeterminationEvent_Reference.setOfReferences_id
there are no indications of this problem in the log, so the issue is fixed for sure. Andreas Kohlbecker
11:38 AM Revision 68935150 (taxeditor): add specimen id to specimen selection dialog of character matrix
Katja Luther
11:15 AM Revision c58ab5d6 (taxeditor): ref #9762: avoid NPE
Katja Luther
10:08 AM bug #8936 (Closed): Improve default distribution formatting
As far as I remember the level-0 item glue ", " was needed in some cases where only one hierarchy level of area has ... Andreas Kohlbecker
09:51 AM Revision fd550079 (taxeditor): ref #9084 fix German translation for description delete config label
Andreas Müller
09:42 AM Revision 44490676 (taxeditor): ref #9732 change Motif to Subject in TaxEditor
Andreas Müller
09:32 AM feature request #3630: Taxeditor should add mimetype of mediaRepresentations automatically
As this is already partly implemented we probably only need to adapt the existing algorithm.
@Andreas K., as you h...
Andreas Müller
09:25 AM task #2452 (Duplicate): Media entities and Webpages
I think this is kind of a duplicate discussion of #9067. We decided there to keep the current data model and store me... Andreas Müller
09:20 AM Revision a1fd4a9b (taxeditor): ref #9762: cultivar group for cultivar and cultivar group and rank...
Katja Luther
08:57 AM Revision 3487252c (taxeditor): add correct handling for keepOrWarn when moving taxa
Katja Luther

09/20/2021

11:22 PM bug #9732 (In Progress): Open issues in specimen tree editor
Andreas Müller
11:18 PM bug #9762 (Feedback): Handle cultivars correctly in TaxEditor
Cultivar group should always appear while cultivar name should disappear if group (or grex) is selected. Currently it... Andreas Müller
11:17 PM bug #9762: Handle cultivars correctly in TaxEditor
Cultivar Group should appear **above** Cultivar Name Andreas Müller
11:15 PM bug #9762: Handle cultivars correctly in TaxEditor
Due to the above error (and maybe some similar errors) it is difficult to test.
Before passing back please do test...
Andreas Müller
11:09 PM bug #9762: Handle cultivars correctly in TaxEditor
I got NPE when changing to ICNCP:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/rem...
Andreas Müller
11:04 PM bug #8936 (Feedback): Improve default distribution formatting
The new implementation looks very good and I guess the ticket can be closed.
The only thing I realized and was won...
Andreas Müller
10:34 PM Revision 6c55c1d0 (cdm-dataportal): ref #9776 enfocing https for webservice requests and notifyin...
Andreas Kohlbecker
10:32 PM Revision d907a8c6 (cdm-dataportal): adapting test to shorter term labels
Andreas Kohlbecker
10:19 PM bug #9734: Correct handling for secundum references when moving taxon to new parent
Can you please test all possible combinations on nightly and put the result of the test into this ticket? Andreas Müller
10:18 PM bug #9734 (Feedback): Correct handling for secundum references when moving taxon to new parent
This did not work for me. I did select "Keep if all related secs are the same, warn otherwise". I moved a taxon with ... Andreas Müller
10:03 PM bug #9772 (Feedback): Improve DTO usage for character matrix
There seems to be another issue: when I change only 1 record 8 new records are added in the DB but only 1 should be a... Andreas Müller
09:49 PM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> The error changed a bit but I still get an NPE regarding the StatMeasureValues.type:
I ch...
Andreas Müller
09:45 PM bug #9772: Improve DTO usage for character matrix
The error changed a bit but I still get an NPE regarding the StatMeasureValues.type:
~~~
last remote method : htt...
Andreas Müller
09:41 PM bug #9772: Improve DTO usage for character matrix
Katja Luther wrote:
> Andreas Müller wrote:
> > Changes in data do currently not get persisted
>
> Did you resta...
Andreas Müller
03:54 PM bug #9772: Improve DTO usage for character matrix
now the matrix is visible also in DDS perspective again. For whatever reason the problem seems to be solved. Andreas Müller
03:04 PM bug #9772 (Resolved): Improve DTO usage for character matrix
I put this to resolved as it is for review. Andreas Müller
02:54 PM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Changes in data do currently not get persisted
Did you restart the server?
Katja Luther
02:43 PM bug #9772: Improve DTO usage for character matrix
Andreas Müller wrote:
> Katja Luther wrote:
> > I also checked the actual nightly build and your test DB and all va...
Katja Luther
02:25 PM bug #9772: Improve DTO usage for character matrix
Changes in data do currently not get persisted Andreas Müller
02:08 PM bug #9772: Improve DTO usage for character matrix
I got when saving
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/common.ser...
Andreas Müller
02:04 PM bug #9772: Improve DTO usage for character matrix
Katja Luther wrote:
> I also checked the actual nightly build and your test DB and all values are shown.
>
> Now ...
Andreas Müller
01:45 PM bug #9772 (In Progress): Improve DTO usage for character matrix
Now DescriptiveDatasetDto is used and the rowWrapper uses DescriptionDtos as well. Katja Luther
01:43 PM bug #9772 (Closed): Improve DTO usage for character matrix
The character matrix still uses cdm objects for descriptive dataset and descriptions, we need to switch to DTOs as we... Katja Luther
04:45 PM bug #9776: Enforce cdm websservice access via https when pages are requested via this schema
The solution to this problem is to use https also for the "CDM web service URL".
This should be enforced automatical...
Andreas Kohlbecker
04:38 PM bug #9776 (New): Enforce cdm websservice access via https when pages are requested via this schema
Original subject "kml layer request for https page causes mixed content problem"
e.g. https://cichorieae.e-taxonom...
Andreas Kohlbecker
03:49 PM bug #9746 (Closed): Remove excluded and unplaced flags from right click menu
Seems to be fully fixed now. Andreas Müller
03:42 PM feature request #8028 (Closed): Better representation of web app media in the image gallery
I moved the open issues handling to new ticket #9775 Andreas Müller
03:25 PM feature request #8028: Better representation of web app media in the image gallery
please create a new ticket with the results of your experiments. Your findings need more time to discuss them properl... Andreas Kohlbecker
03:41 PM bug #9775 (New): Open issues for web app media in the image gallery
see #8028#note-18 ff for the open issues Andreas Müller
03:18 PM bug #9739: Add common name languages preference to DB preferences
Generally the functionality seems to work now and ticket can be closed. Andreas Müller
03:17 PM bug #9739 (Feedback): Add common name languages preference to DB preferences
When trying to override via local settings I get:
~~~
org.eclipse.core.runtime.AssertionFailedException: null arg...
Andreas Müller
09:19 AM bug #9739 (Resolved): Add common name languages preference to DB preferences
Andreas Müller wrote:
> Is this fixed already?
yes
Katja Luther
02:20 PM feature request #9774 (New): aggregate statistics on site visits (Piwik)
aggregate statistics one site visits are an important measure which has already been requested in #2379
matomo how...
Andreas Kohlbecker
02:14 PM task #9773 (New): Improve matomo performance
The matomo instance at https://cybertaxonomy.eu/piwik is extremely slow showing the overview dashboard for E+M fir ex... Andreas Kohlbecker
02:00 PM bug #9710 (Closed): DataIntegrityViolationException after adding a specimen to the matrix
further discussions on DTO handling were moved to #9772.
This ticket can be closed as it originally handles only t...
Andreas Müller
10:06 AM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
Andreas Müller wrote:
> I get the strange behavior that the matrix only shows the most left factual data column corr...
Katja Luther
01:56 PM Revision faf98509 (taxeditor): ref #9746: also remove doubtful menu entry
Katja Luther
01:47 PM Revision e128bbe9 (taxeditor): ref #9772: adapt QuantitativeDataDialogComposite to dto usage
Katja Luther
10:51 AM task #2149 (Worksforme): implement test cases
tests are already implemented Andreas Kohlbecker
10:11 AM bug #4849: zen_basetheme custom icon size intially not recognized
still relevant and unsolved Andreas Kohlbecker
10:11 AM Revision 10f4a3fd (cdmlib): ref #9710: avoid NPEs
Katja Luther
10:05 AM Revision 353c0eee (cdmlib): ref #9758 application.properties for the production environement
Andreas Kohlbecker
09:19 AM Revision 32854562 (taxeditor): remove flag handler from fragment.e4xmi
Katja Luther

09/19/2021

10:01 PM bug #9739: Add common name languages preference to DB preferences
Is this fixed already? Andreas Müller

09/17/2021

11:56 PM feature request #9771 (In Progress): Implement Cdm2Cdm for vocabularies
Needed for loading terms from term server and for moving the character ontology. Andreas Müller
11:52 PM bug #9346 (Closed): Adding specimen to character matrix fails sometimes
I tried to add the test specimen again and it worked. So I guess the ticket is correctly fixed. Andreas Müller
11:24 PM bug #9766: CDM vocabularies should not be editable
AM:
Wir könnten auch je Klasse ein cdmVocabularyUuids() einführen, die dann alle bekannten CDM VOC uuids zurückgib...
Andreas Müller
10:43 AM bug #9766 (New): CDM vocabularies should not be editable
this is already implemented for languages in #9747. We should implement it for all CDM vocabularies. Andreas Müller
11:16 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
I worked with 5.27.0.202109161022 beta as there is no newer version for nightly (build does not work). Also the curre... Andreas Müller
11:13 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
Also I get (during save I think, but not sure)
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/re...
Andreas Müller
10:34 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
I get the strange behavior that the matrix only shows the most left factual data column correctly. All other columns ... Andreas Müller
10:29 PM bug #9710 (Feedback): DataIntegrityViolationException after adding a specimen to the matrix
Playing around I got
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxonn...
Andreas Müller
10:16 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
Loading seems to be much faster now. Very good! Andreas Müller
09:56 PM bug #9710 (Resolved): DataIntegrityViolationException after adding a specimen to the matrix
I put this to resolved as it is easier to find during review this way. We may split the ticket after release if not f... Andreas Müller
09:08 PM feature request #8325 (In Progress): Create CDM Instance with all CDM core terms
Created database instance Andreas Müller
09:04 PM Revision 03e65c4a (taxeditor): rename taxonomic tree to ... trees
Andreas Müller
06:30 PM feature request #424: implement advanced search
I marked those issues that seem to be fixed. Should we open new subtickets for the remaining issues? Andreas Müller
05:46 PM feature request #4118 (Feedback): @NotPartOf Annotation to exclude properties from the permission...
Is this still an open issue?
I remember we had another solution for e.g. cache fields. We should link this solutio...
Andreas Müller
05:35 PM bug #4849: zen_basetheme custom icon size intially not recognized
This is not a cdmlib ticket.
Is it still an open issue?
Andreas Müller
05:14 PM task #2149 (Feedback): implement test cases
is this still an open issue? Andreas Müller
05:00 PM Revision 7c1827b5 (cdmlib-apps): ref #9755 adapt app-import to new cultivar epithet naming
Andreas Müller
04:58 PM feature request #6963 (In Progress): Implement cache strategy for cultivar plant names (done), ba...
Cultivar names are mostly implemented, therefore set to "InProgress" Andreas Müller
04:52 PM feature request #8028: Better representation of web app media in the image gallery
Should we create new ticket(s) for the open issues or should we move this ticket to an upcoming milestone.
As it i...
Andreas Müller
04:49 PM bug #9730 (Closed): Open URL Button is disabled for persisted data
I tested and it works as expected. Andreas Müller
03:37 PM feature request #3990 (Closed): [DISCUSS] How to implement citation suggestion to each taxon
I think we can close this ticket as the source information is implemented as described via sec reference (former last... Andreas Müller
03:34 PM task #7369 (Closed): Handle taxonomically valueless taxa correctly
An example for a "valueless" taxon in CDM is https://www.europlusmed.org/cdm_dataportal/taxon/6a572ecd-f989-44a2-96ce... Andreas Müller
03:29 PM task #7346 (Closed): [CHECK] Use separate area vocabulary for common names
Andreas Müller
03:21 PM bug #7823 (Closed): User Persons are not deduplicated
This is fixed. No duplicate or unnecessary users were imported from BM. Though there are a couple of users representi... Andreas Müller
02:58 PM feature request #7801 (Closed): AM: Deduplicate references
The import did run long time ago. Deduplication was done as far as it was done. As we can't change much here other th... Andreas Müller
01:27 PM feature request #9770: Discuss symbols for (inverse) misapplications and pro parte synonyms
Andreas Müller wrote:
> Is there an example dataportal page for inverse pro parte synonyms or even partial synonyms?...
Andreas Müller
12:47 PM feature request #9770: Discuss symbols for (inverse) misapplications and pro parte synonyms
Is there an example dataportal page for inverse pro parte synonyms or even partial synonyms? Andreas Müller
12:46 PM feature request #9770 (New): Discuss symbols for (inverse) misapplications and pro parte synonyms
for discussions and examples see #7514
Current symbols for inverse MAN and pro parte synonyms are not very convinc...
Andreas Müller
12:50 PM bug #7514 (Closed): Change direct and inverse symbol for pro parte synonym and misapplied name re...
The main task of this ticket has been fixed (invert symbols for MAN relationships).
The task to find better symbol...
Andreas Müller
12:48 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
Andreas Kohlbecker wrote:
> the test page http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/t...
Andreas Müller
12:29 PM feature request #8004 (Closed): Add sortindex to description element
This has been implemented. Follow-up tickets for TaxEditor and dataportal have been created.
So I close this ticket.
Andreas Müller
12:27 PM feature request #9769 (New): Implement sortindex field for description elements in dataportal
for more details see #8004 Andreas Müller
12:24 PM feature request #9768 (New): Implement sortindex field for description elements in TaxEditor
For now it could look like this:
There is a label showing the current sortindex
e.g. "Order: 1"
with buttons...
Andreas Müller
12:11 PM feature request #7372 (Closed): Allow configuring feature/term tree
This flag is in use already and no problems occurred so far. So I think we can close this ticket. Andreas Müller
12:08 PM feature request #8006 (Closed): Improve labels for taxon relationships
Looks correct in production databases
~~~sql
SELECT r.text, r.abbreviatedLabel, r.label, r.plural, r.language_id,...
Andreas Müller
12:02 PM feature request #9767 (Duplicate): Improve labels for concept relationships
Upps, this duplicates #8007 Andreas Müller
12:01 PM feature request #9767 (Duplicate): Improve labels for concept relationships
In #8006 labels for taxon relationships like misapplied names or pro parte synonym relationships where updated correc... Andreas Müller
11:51 AM bug #9762 (Resolved): Handle cultivars correctly in TaxEditor
Now if ICNCP is selected only the cultivar ranks are available and the fields are displayed depending on the selected... Katja Luther
11:22 AM bug #8113 (Closed): Update TypeDesignationStatus labels
Not sure what this is really about except for the case issues handled in #9263.
Possible issues could be:
* Som...
Andreas Müller
10:59 AM feature request #7640: Update ISO country names where necessary
Andreas Müller wrote:
> @Henning: can you review after next release if everything works as expected for you?
... ...
Andreas Müller
10:56 AM feature request #7640: Update ISO country names where necessary
This should be fixed. Country names are up-to-date and labels are split into (common and short) labels and official l... Andreas Müller
10:56 AM Revision f4caff64 (taxeditor): ref #9762: handle cultivars correctly in tax editor
Katja Luther
10:49 AM Revision f7b7b300 (taxeditor): rename feature tree to term trees
Katja Luther
10:48 AM bug #825: DefinedTermDaoImpl - missleading method names
This is fixed. Please review.
As the old method findByTitle which did override the same labeled parent method seem...
Andreas Müller
10:24 AM bug #825 (Resolved): DefinedTermDaoImpl - missleading method names
Applied in changeset commit:cdmlib|0dd6415a7665115b465b687879a987b7d70af7ed. Andreas Müller
10:47 AM Revision 30023bc4 (taxeditor): ref #6774: fix export wizard for owl export
Katja Luther
10:45 AM feature request #9747 (Closed): Make languages editable in TaxEditor
This works as expected.
For the disabling of other CDM vocabularies I added a new ticket. If disabling was easy to...
Andreas Müller
10:35 AM bug #9759 (Closed): Person deduplication does not work due to new collectorTitleCache field
I tested in TaxEditor and it seems to work. Andreas Müller
10:24 AM Revision 0dd6415a (cdmlib): fix #825 rename method that searches by representation label in term dao
Andreas Müller
10:23 AM Revision 998924cb (cdmlib): minor
Andreas Müller
10:00 AM Revision bbfc0e17 (cdmlib): cleanup
Andreas Müller
10:00 AM Revision 4e69f890 (cdmlib): ref #9014 allow any word with number as detail in parser
Andreas Müller
09:36 AM bug #9237 (Closed): FeatureTree SortIndex updater creates wrong sortindex
I tested again and could not see any errors. So I close the ticket and move back to fixing milestone.
Reopen if is...
Andreas Müller
08:27 AM feature request #9761 (Closed): Add cultivarGroup as field for handling cultivar groups and grex
Andreas Müller
08:26 AM task #9752 (Closed): Import for Flora of Mexico
Andreas Müller
08:25 AM Revision 1b9f0b93 (cdmlib-apps): ref #9752 add mexico reference updater and mexico datasource
Andreas Müller
07:52 AM Revision 74d2984c (cdmlib): cleanup
Andreas Müller
07:50 AM Revision 3ca53aa1 (cdmlib): cleanup
Andreas Müller
07:26 AM Revision ba7678ee (cdmlib): ref #9758 try to fix dependency issue in mailing test dependencies
Andreas Müller
07:04 AM Revision 38455235 (cdmlib): cleanup
Andreas Müller

09/16/2021

05:10 PM Revision 3ac9e408 (cdmlib): ref #9758 option to define custom configurations in test and producti...
Andreas Kohlbecker
04:40 PM Revision 82da5e6c (cdmlib): ref #9758 configuration for sending emails with smtp properties
Andreas Kohlbecker
03:44 PM feature request #9758 (Resolved): EmailService implemented
Applied in changeset commit:cdmlib|bcf94376128f49035cca1927d59e04c0016bdc7c. Andreas Kohlbecker
03:38 PM feature request #9758: EmailService implemented
the mail configuration section in a aspplication.properties file for the currently implemented `SendEmailConfigurer`
...
Andreas Kohlbecker
03:44 PM Revision bcf94376 (cdmlib): fix #9758 configuration for sending emails with JavaMailSenderImpl
Andreas Kohlbecker
03:44 PM Revision 1574f983 (cdmlib): note on manual anttask execution
Andreas Kohlbecker
12:02 PM Revision 26557b05 (cdmlib): update cached cdm mapping to 5.27.0
Andreas Müller
12:00 PM bug #9765 (Closed): external-links weight range too small and link fiels maxlength to small
Andreas Kohlbecker
11:44 AM bug #9765 (Closed): external-links weight range too small and link fiels maxlength to small
Andreas Kohlbecker
11:54 AM Revision 1ef72ae8 (cdm-dataportal): Merge tag '5.26.7' into develop
tagging HFX Andreas Kohlbecker
11:54 AM Revision ebdf90b5 (cdm-dataportal): Merge branch 'hotfix/5.26.7'
Andreas Kohlbecker
11:54 AM Revision 5683cde6 (cdm-dataportal): bigger weight range for ext-links
Andreas Kohlbecker
11:54 AM Revision cac6121d (cdm-dataportal): ref #9765 bigger weight range for ext-links and more allowed ...
Andreas Kohlbecker
11:53 AM Revision d9086dd9 (cdm-dataportal): ref #9765 bigger weight range for ext-links and more allowed ...
Andreas Kohlbecker
11:40 AM Revision 15dfa454 (cdm-dataportal): bigger weight range for ext-links
Andreas Kohlbecker
11:35 AM Revision c0e9dfbb (taxeditor): ref #9755 adapt taxeditor to cultivarEpi changes
Andreas Müller
11:13 AM Revision 9f8cc8f0 (taxeditor): update taxeditor test H2 to 5.27.0
Andreas Müller
11:11 AM Revision 2d40c638 (cdm-vaadin): update vaadin to 5.27.0
Andreas Müller
11:09 AM Revision 04429991 (cdmlib): update cdmlib test H2 to 5.27.0
Andreas Müller
11:08 AM Revision ae57f5e3 (cdm-dataportal): Merge tag '5.26.6' into develop
tagging hotfix Andreas Kohlbecker
11:08 AM Revision cf62482d (cdm-dataportal): Merge branch 'hotfix/5.26.6'
Andreas Kohlbecker
11:08 AM Revision 588e5e89 (cdm-dataportal): fix #9763 adapting broken exist function to new data scheme
Andreas Kohlbecker
11:04 AM Revision 1684fbfa (cdmlib): minor
Andreas Müller
11:01 AM Revision a1646aec (cdmlib): change to model version 5.27.0
Andreas Müller
11:01 AM Revision a0c48c4a (cdmlib): ref #9761 move cultivar info to new group field where necessary
Andreas Müller
11:01 AM Revision 388be066 (cdmlib): ref #7640 fix update script for ISO country update
Andreas Müller
11:01 AM Revision 6cfc0581 (cdmlib): ref #9755 update cultivarName->cultivarEpithet
Andreas Müller
11:01 AM Revision 58a72ae6 (cdmlib): ref #7640 include titleCache for country label update
Andreas Müller
11:01 AM Revision 3ded2197 (cdmlib): ref #9757 fix cultivar group parser text encoding
Andreas Müller
11:01 AM Revision bf56e79a (cdmlib): cleanup
Andreas Müller
11:01 AM Revision dc7815d5 (cdmlib): ref #7640, ref #4209 update country labels and split label from offic...
Andreas Müller
11:01 AM Revision bd2f30c9 (cdmlib): ref #9755 add abbrev to cultivar group representation
Andreas Müller
11:01 AM Revision f7e576ba (cdmlib): ref #9761 add cultivarGroup column
Andreas Müller
09:50 AM feature request #7640 (Resolved): Update ISO country names where necessary
Andreas Müller
 

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