Activity
From 08/25/2021 to 09/23/2021
09/23/2021
- 05:52 PM feature request #6640: Integrate RIS Import in taxEditor
- KL 2017-05-12 (not sure if still an open issue):
der Ris Import funktioniert jetzt bei mir lokal im Editor.
Den ... - 05:42 PM bug #9762 (Resolved): Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> There is a single issue left. When switching back from ICNCP to ICNAFP there comes a warning... - 01:29 PM bug #9762: Handle cultivars correctly in TaxEditor
- There is a single issue left. When switching back from ICNCP to ICNAFP there comes a warning like:
![](picture728-... - 01:17 PM bug #9762: Handle cultivars correctly in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > When selecting a rank in the combobox the rank shown below in the l... - 01:15 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> Ok, I found it. Fields that update the nameCache need an annotation @CacheUpdate("nameCache"... - 09:03 AM bug #9762: Handle cultivars correctly in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Andreas Müller wrote:
> > > > Works c... - 08:43 AM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> When selecting a rank in the combobox the rank shown below in the list is selected and shown... - 08:36 AM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Works correctly now except for 1 ope... - 05:32 PM bug #8936 (Feedback): Improve default distribution formatting
- 01:04 PM bug #8936: Improve default distribution formatting
- In general I did not yet test other databases with status being shown. A reason was that I did not find the place whe...
- 01:03 PM bug #8936: Improve default distribution formatting
- Andreas Kohlbecker wrote:
> I changed the code a bit so that the item suffix is only added when there are not child-... - 11:37 AM bug #8936: Improve default distribution formatting
- AM:
wir arbeiten in diesem Release an der Optimierung des Verbreitungsstrings bezüglich Separatoren und Fußnoten. ... - 11:16 AM bug #8936 (Resolved): Improve default distribution formatting
- I changed the code a bit so that the item suffix is only added when there are not child-nodes.
Additionally, I als... - 05:31 PM feature request #9780 (Closed): Split rank grex into grex (ICNCP) and grex (infraspec)
- Reordering for existing terms will be done in #9784
- 05:28 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
- CY (full, place published) and PY (fix merge with DA, year) fixed in #9786
- 05:26 PM feature request #9786 (Resolved): Implement tags CY and fix PY handling for RIS import
- Applied in changeset commit:cdmlib|d457f5b7c2f642f4c600124e9905ea01255645b4.
- 03:26 PM feature request #9786 (Closed): Implement tags CY and fix PY handling for RIS import
- follow up for #6636
CY (Place published) is not yet handled.
PY handling has a bug and is not yet used therefor... - 05:26 PM Revision d457f5b7 (cdmlib): fix #9786 implement CY and fix PY for RIS import (and fix Source handling for in-references)
- 05:16 PM Revision bb25976f (taxeditor): ref #9772: fix handling when more than 1 unit is choosable - continue
- 04:22 PM Revision 49fee2fb (cdmlib): ref #9772: avoid another NPE
- 03:21 PM Revision 638120c2 (taxeditor): ref 9762: adapt message when cultivar epithets are removed.
- 02:56 PM Revision 9740c8f1 (cdmlib): Cleanup RIS and Endnote tests
- 02:43 PM bug #9772: Improve DTO usage for character matrix
- Currently it looks like quantitative data characters which support >1 measurment units can not be opened in the popup...
- 01:51 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> We will need an update script to try to update existing data (in greece-bupleurum there are ... - 01:43 PM bug #9772: Improve DTO usage for character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > Values are not persisted when entered into a taxon description (lit... - 11:15 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Values are not persisted when entered into a taxon description (literatur description or def... - 01:56 PM Revision 8b7732ac (taxeditor): ref #9772: fix handling when more than 1 unit is choosable - continue
- 01:50 PM Revision 6bcb1685 (cdmlib): ref #9772: avoid NPE
- 01:49 PM bug #9785 (Closed): Update script for missing measurment unit_ids (matrix)
- for details see #9772#note-24
The problem existed already befor so there are lots of data with missing unit_id (e.... - 01:48 PM Revision 446189d9 (taxeditor): ref #9772: fix handling when more than 1 unit is choosable
- 01:08 PM feature request #9778 (Closed): Add new rank terms lusus, subgrex and subproles
- 01:06 PM Revision f263ddd1 (cdmlib): ref #6387 add code validation for cultivar group epi
- 11:03 AM Revision cbefe788 (cdm-dataportal): ref #8936 item-suffix only when child-nodes exist
- 11:03 AM Revision c4f29439 (cdmlib): ref #9772: fix getting taxonRowWrapper - continue
- 10:32 AM Revision e1fef636 (cdmlib): ref #9772: fix getting taxonRowWrapper
- 10:29 AM bug #9477 (Resolved): New ordered terms do not have correct order index
- before closing check on production if it worked correctly. I already tested locally.
~~~
SELECT id, dtb.orderInde... - 10:26 AM bug #9784 (New): Update script for term order of ordered CDM terms
- copied from #9477
Termloader is fixed now but we still need to update order for already existing term which were l... - 10:22 AM Revision 749a2e19 (cdmlib): ref #9477 fix term loading for ordered new terms
- 09:45 AM Revision 0a5a166c (cdmlib): fix incorrect previousUpdater info in 5.27.0_5.27.1
- 09:23 AM Revision ab600885 (taxeditor): ref #9762: fix problems with rank combo and switch nomenclatural code
- 09:02 AM Revision 0ea0fdd3 (cdmlib): ref #9762, ref #9755 Add nameCache annotation to cultivar fields
09/22/2021
- 08:02 PM bug #8936 (Feedback): Improve default distribution formatting
- For a portal showing also the status in the distribution string this does not look so well yet
: ref #9778, ref #9782 fix parsing for (sub)proles
- 06:44 PM bug #9772: Improve DTO usage for character matrix
- Values are not persisted when entered into a taxon description (literatur description or default description). Or may...
- 06:27 PM bug #9772 (Feedback): Improve DTO usage for character matrix
- 06:26 PM bug #9772: Improve DTO usage for character matrix
- If the unit is changed via the quantitative data editing dialog and persisted this change does not appear in the data...
- 06:22 PM bug #9772: Improve DTO usage for character matrix
- We will need an update script to try to update existing data (in greece-bupleurum there are 787 quantitative data wit...
- 11:29 AM bug #9772 (Resolved): Improve DTO usage for character matrix
- Save should not create new states or statistical values, but I think this is a new ticket because it is no regression...
- 09:03 AM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> The smv.type_id IS NULL issue seems to be solved now. But there is another critical issue: t... - 06:35 PM bug #9783 (New): When a new value is added to a quantitative data it should appear at the end
- currently it appears at the beginning. But this is only the case for the current editing. When a other value is added...
- 06:15 PM task #9782 (Closed): Adapt abbreviation and idInVoc for rank "proles"
- Checked result in updated database.
- 02:44 PM task #9782 (Resolved): Adapt abbreviation and idInVoc for rank "proles"
- 02:43 PM task #9782 (Closed): Adapt abbreviation and idInVoc for rank "proles"
- AM:
wie ist denn die übliche Formatierung bei proles /subproles. Bislang haben wir das als „prol.“, also abgekürzt... - 06:13 PM bug #9734 (Closed): Correct handling for secundum references when moving taxon to new parent
- Works as expected now
- 11:29 AM bug #9734 (Resolved): Correct handling for secundum references when moving taxon to new parent
- I will test again with nightly when the test server is available again
- 11:20 AM bug #9734: Correct handling for secundum references when moving taxon to new parent
- Tested locally (test server is unavailable):
pref: keepOrWarn
* if the secs the same -> ok
* if secs different -... - 05:57 PM Revision 2f1d896d (cdmlib): ref #9757 add test for parsing into existing name
- 05:56 PM Revision de0abe03 (cdmlib): ref #9754 fix tests
- 05:32 PM Revision 1c0ec33b (cdmlib): ref #9754 fix appended phrase handling in cultivar formatter (cont.)
- 05:26 PM Revision b58adaec (cdmlib): ref #9754 fix appended phrase handling in cultivar formatter
- 04:58 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Works correctly now except for 1 open issue: if cultivar epithet ... - 04:56 PM bug #9762: Handle cultivars correctly in TaxEditor
- When changing back from ICNCP to ICNAFP the rank list is not updated.
Also the currently selected rank is not remove... - 04:52 PM bug #9762: Handle cultivars correctly in TaxEditor
- When selecting a rank in the combobox the rank shown below in the list is selected and shown afterwards. The selectio...
- 04:35 PM bug #9762 (Feedback): Handle cultivars correctly in TaxEditor
- There was also another NPE that I fixed (careful with name.getRank().doSomething() !!)
- 03:10 PM bug #9762 (Resolved): Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> >If ICNafp is selected do not show cultivar ranks
>
> I suggest to implement it like this... - 03:08 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> >If ICNafp is selected do not show cultivar ranks
>
> I suggest to implement it like this... - 03:08 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> This is decided now:
>
> * if "Grex (ICNCP)" is selected show "Cultivar Group"
this is... - 12:43 PM bug #9762: Handle cultivars correctly in TaxEditor
- >If ICNafp is selected do not show cultivar ranks
I suggest to implement it like this for now - 12:40 PM bug #9762: Handle cultivars correctly in TaxEditor
- This is decided now:
* if "Grex (ICNCP)" is selected show "Cultivar Group" - 12:38 PM bug #9762: Handle cultivars correctly in TaxEditor
- New requirement:
* Rename Cultivar Name to Cultivar Epithet and Cultivar Group to Cultivar Group Epi. (to make it ... - 09:58 AM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> There is the general issue that the details view does not update correctly when the nomencla... - 04:48 PM Revision d0deb3b0 (cdmlib): ref #9755 add DENOMINATIONCLASS to isCultivar()
- 04:26 PM Revision d29fd8e4 (taxeditor): ref #9762 fix NPE in cultivar handling
- 03:09 PM Revision 7a2e68e9 (taxeditor): ref #9762: smaller changes for cultivar names
- 02:58 PM Revision df18f369 (cdmlib): ref #9782 adapt abbreviation for proles - adapt tests
- 02:44 PM Revision 35146960 (cdmlib): ref #9782 adapt abbreviation for proles
- 02:37 PM feature request #9755: Open issues for cultivar handling
- AM
Denomination class:
Verstehe ich es richtig, dass das in der Regel Taxa vom Rang „Genus“ sind, und in seltenen... - 02:33 PM feature request #9755: Open issues for cultivar handling
- AM:
Verwendung von nom. Author and nom. Ref. (und evtl. andere Zusätze):
Article 28.2 verstehe ich so, dass ein A... - 02:22 PM feature request #9755 (In Progress): Open issues for cultivar handling
- The important issues have been fixed with 5.27 mostly using separate tickets.
- 02:35 PM feature request #9757: Make cultivars, cultivar groups and grexes parsable
- AM:
Arti. 21.18 nennt die erlaubten Zeichen für Kultivar-Epithete. Gelten diese Zeichen auch für Gruppen bzw. für ... - 02:30 PM feature request #6387 (Resolved): [Rule] Rank rule for CultivarPlantNames
- 01:24 PM feature request #6387: [Rule] Rank rule for CultivarPlantNames
- We will not handle convar. as cultivar rank.
WGB:
ja, ich würde convar. pragmatisch in die Liste der „alten bot... - 02:29 PM Revision f112ee1f (cdmlib): fix CdmUpdater to correct version
- 02:14 PM Revision dacb2825 (cdmlib): ref #9755 update script for grex infraspec. representation
- 02:05 PM Revision af10946c (cdmlib): ref #6387 test that convar is not a cultivar
- 02:04 PM Revision 9752a045 (cdmlib): ref #9771Additional ignore on seupClass, just in case
- 01:44 PM bug #9781 (New): Merge of QuantitativeData or CategoricalData from Character Matrix should not create new records
- Actually every merge of already existing but updated character data creates new states/statistical values and removes...
- 01:19 PM Revision 24d1dcbf (taxeditor): ref #9762: remove cultivar ranks for non cultivar codes and use isCultivar()
- 01:18 PM Revision 6a5d2783 (taxeditor): ref #9734: add missing brackets to condition
- 12:47 PM feature request #9754 (Closed): Adapt cache strategy to support cultivar names
- 12:45 PM Revision bd349938 (cdmlib): ref #9771 first incomplete version of Cdm2CdmVocabularyImport (cont.)
- 12:26 PM feature request #9780 (Resolved): Split rank grex into grex (ICNCP) and grex (infraspec)
- 12:25 PM feature request #9780 (Closed): Split rank grex into grex (ICNCP) and grex (infraspec)
- AM:
wir haben in letzter Zeit versucht das Handling (Parsen, Formattieren, Handling im TaxEditor) von Kultivaren e... - 12:20 PM Revision 6825968d (cdmlib): cleanup
- 12:19 PM Revision 8876144e (cdmlib): ref #9771 first incomplete version of Cdm2CdmVocabularyImport
- 12:13 PM feature request #9778 (Resolved): Add new rank terms lusus, subgrex and subproles
- 10:43 AM feature request #9778 (Closed): Add new rank terms lusus, subgrex and subproles
- About lusus:
Rangstufen: Die untenstehenden „Ränge“ fehlen in der normalen Tabelle („sublusus“ haben wir z.B.)... - 12:04 PM Revision 9585c46e (cdmlib): ref #9778, ref #9755, ref #9754, ref # 9757 split grex and add new ranks lusus, subproles and subgrex
- 11:25 AM bug #9779 (New): Exception when override db preference
- copied from #9739:
When trying to override preference common name language via local settings I get:
~~~
org.e... - 11:22 AM bug #9739 (Closed): Add common name languages preference to DB preferences
- create new ticket with the exception of comment 13
- 10:34 AM Revision f73004b4 (taxeditor): ref #9734: adapt message
- 10:29 AM task #8392 (Worksforme): Types in PhycoBank
- 08:32 AM task #8392 (Resolved): Types in PhycoBank
- The displayed data are as expected. All issues are solved. The ticket can be closed.
- 09:11 AM Revision 7a8c920c (cdmlib): ref #9772: fix missing unit
09/21/2021
- 11:14 PM bug #9772: Improve DTO usage for character matrix
- The smv.type_id IS NULL issue seems to be solved now. But there is another critical issue: the unit_id is often null ...
- 03:56 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> There seems to be another issue: when I change only 1 record 8 new records are added in the ... - 11:10 PM task #3346 (Resolved): Team.addListenerForTeamMember(Person member) adds idle listener
- 10:48 PM bug #9762: Handle cultivars correctly in TaxEditor
- There is the general issue that the details view does not update correctly when the nomenclatural code or ranks are c...
- 10:42 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> Works correctly now except for 1 open issue: if cultivar epithet or cultivar group are chang... - 10:40 PM bug #9762: Handle cultivars correctly in TaxEditor
- Works correctly now except for 1 open issue: if cultivar epithet or cultivar group are changed the name Cache and the...
- 10:44 PM Revision d5fbdca7 (cdmlib): ref #9754 handle infraspecific epithets better
- 10:20 PM feature request #9754: Adapt cache strategy to support cultivar names
- Only open issue is the correct handling of rank grex
- 01:57 PM feature request #9754 (Resolved): Adapt cache strategy to support cultivar names
- Not yet fully resolved but set to resolved to not forget
- 10:18 PM feature request #9757 (Closed): Make cultivars, cultivar groups and grexes parsable
- This should be fixed. Only correct usage of rank grex needs discussion but is handled in generell cultivar ticket #9755
- 01:56 PM feature request #9757 (Resolved): Make cultivars, cultivar groups and grexes parsable
- Not yet fully resolved but set to resolved to not forget
- 10:10 PM Revision 9d8aa1aa (cdmlib): ref #9754 handle null values for cultivar epis better
- 09:52 PM Revision fe699834 (cdmlib): cleanup
- 08:59 PM Revision 12ffe453 (cdmlib): ref #9757 fix emptying name before parsing
- 08:41 PM Revision 11fb1cef (taxeditor): ref #9762 fix NPE in cultivar handling
- 08:05 PM Revision c03313e2 (cdmlib): ref #9757 fix cultivar parser test
- 07:56 PM Revision ad3aa7ba (cdmlib): ref #9754 support author and nom. ref. handling for cultivar formatting
- 07:33 PM Revision 446e5712 (cdmlib): ref #9757 improve cultivar parser
- * parse with referencedName()
* include author parsing
* include nom. ref. parsing - 07:33 PM Revision 26a096a2 (cdmlib): cleanup
- 04:02 PM Revision 2966c278 (cdmlib): ref #9772: smaller changes
- 03:42 PM Revision 83db01f8 (cdmlib): ref #9772: deproxy the term in getTermByClassAndUUID
- 03:25 PM bug #825 (Closed): DefinedTermDaoImpl - missleading method names
- fully solved
- 03:18 PM bug #7904: DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
- ahh this was solved for Release 5.25
- 03:18 PM bug #7904 (Closed): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
- code looks good. I also tested with yourkit, ticket can be closed.
- 02:49 PM task #8392: Types in PhycoBank
- Hi Hennig It ink this is all solved now and we can close this ticket as "worksforme"
- 02:32 PM bug #9777 (New): TypeError: Argument 1 passed to cdm_tagged_text_add_options() in registration-search
- http://edit.test/d7/phycobank/cdm_dataportal/registration-search/filter?identifier=&taxon_name=Mi&reference_citation=...
- 02:16 PM feature request #9758 (Closed): EmailService implemented
- implemented, covered by integration tests and not causing problem in existing apps -> can be closed
- 02:05 PM task #8379 (Closed): Review strange specimen implementations
- 02:05 PM task #8379: Review strange specimen implementations
- final check successful, can be closed, moving to the milestone for which this has been fixed: Release 5.18
- 01:58 PM task #7099 (Closed): Make CdmAuthority a persistable class
- two more lines of doc and closing this ticket
- 01:07 PM task #7099 (Resolved): Make CdmAuthority a persistable class
- I added some javadoc. Please extend if you remember more details.
I implemented a first toString() method. Can be ... - 11:34 AM task #7099 (Feedback): Make CdmAuthority a persistable class
- the implementation looks good, I only got three opens points:
* Documentation is missing, I think only linking to ... - 01:57 PM Revision a15be025 (cdmlib): ref #7099 documentation on the intendet purpose of CdmAuthority
- 01:56 PM feature request #9755 (Resolved): Open issues for cultivar handling
- Not yet fully resolved but set to resolved to not forget
- 01:35 PM bug #9740 (Worksforme): Adapt Motive(Motif) to Subject in data portal
- Ahh, sorry, this was a mistake from my side. It does not exist in the dataportals.
- 10:44 AM bug #9740 (Feedback): Adapt Motive(Motif) to Subject in data portal
- There is no such term in the dataportal code.
Please can you give an example for a dataportal page where this label ... - 01:04 PM Revision b4a56647 (cdmlib): ref #7099 javadoc added to CdmAuthority
- 12:44 PM Revision 73e39cab (cdmlib): ref #7099 implement toString and isEqual for CdmAuthority
- 12:30 PM Revision 55d06011 (cdmlib): cleanup
- 11:41 AM bug #8429 (Closed): Rename DeterminationEvent_Reference.setOfReferences_id
- there are no indications of this problem in the log, so the issue is fixed for sure.
- 11:38 AM Revision 68935150 (taxeditor): add specimen id to specimen selection dialog of character matrix
- 11:15 AM Revision c58ab5d6 (taxeditor): ref #9762: avoid NPE
- 10:08 AM bug #8936 (Closed): Improve default distribution formatting
- As far as I remember the level-0 item glue ", " was needed in some cases where only one hierarchy level of area has ...
- 09:51 AM Revision fd550079 (taxeditor): ref #9084 fix German translation for description delete config label
- 09:42 AM Revision 44490676 (taxeditor): ref #9732 change Motif to Subject in TaxEditor
- 09:32 AM feature request #3630: Taxeditor should add mimetype of mediaRepresentations automatically
- As this is already partly implemented we probably only need to adapt the existing algorithm.
@Andreas K., as you h... - 09:25 AM task #2452 (Duplicate): Media entities and Webpages
- I think this is kind of a duplicate discussion of #9067. We decided there to keep the current data model and store me...
- 09:20 AM Revision a1fd4a9b (taxeditor): ref #9762: cultivar group for cultivar and cultivar group and rank handling
- 08:57 AM Revision 3487252c (taxeditor): add correct handling for keepOrWarn when moving taxa
09/20/2021
- 11:22 PM bug #9732 (In Progress): Open issues in specimen tree editor
- 11:18 PM bug #9762 (Feedback): Handle cultivars correctly in TaxEditor
- Cultivar group should always appear while cultivar name should disappear if group (or grex) is selected. Currently it...
- 11:17 PM bug #9762: Handle cultivars correctly in TaxEditor
- Cultivar Group should appear **above** Cultivar Name
- 11:15 PM bug #9762: Handle cultivars correctly in TaxEditor
- Due to the above error (and maybe some similar errors) it is difficult to test.
Before passing back please do test... - 11:09 PM bug #9762: Handle cultivars correctly in TaxEditor
- I got NPE when changing to ICNCP:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/rem... - 11:04 PM bug #8936 (Feedback): Improve default distribution formatting
- The new implementation looks very good and I guess the ticket can be closed.
The only thing I realized and was won... - 10:34 PM Revision 6c55c1d0 (cdm-dataportal): ref #9776 enfocing https for webservice requests and notifying user about misconfiguration
- 10:32 PM Revision d907a8c6 (cdm-dataportal): adapting test to shorter term labels
- 10:19 PM bug #9734: Correct handling for secundum references when moving taxon to new parent
- Can you please test all possible combinations on nightly and put the result of the test into this ticket?
- 10:18 PM bug #9734 (Feedback): Correct handling for secundum references when moving taxon to new parent
- This did not work for me. I did select "Keep if all related secs are the same, warn otherwise". I moved a taxon with ...
- 10:03 PM bug #9772 (Feedback): Improve DTO usage for character matrix
- There seems to be another issue: when I change only 1 record 8 new records are added in the DB but only 1 should be a...
- 09:49 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> The error changed a bit but I still get an NPE regarding the StatMeasureValues.type:
I ch... - 09:45 PM bug #9772: Improve DTO usage for character matrix
- The error changed a bit but I still get an NPE regarding the StatMeasureValues.type:
~~~
last remote method : htt... - 09:41 PM bug #9772: Improve DTO usage for character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > Changes in data do currently not get persisted
>
> Did you resta... - 03:54 PM bug #9772: Improve DTO usage for character matrix
- now the matrix is visible also in DDS perspective again. For whatever reason the problem seems to be solved.
- 03:04 PM bug #9772 (Resolved): Improve DTO usage for character matrix
- I put this to resolved as it is for review.
- 02:54 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Changes in data do currently not get persisted
Did you restart the server? - 02:43 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Katja Luther wrote:
> > I also checked the actual nightly build and your test DB and all va... - 02:25 PM bug #9772: Improve DTO usage for character matrix
- Changes in data do currently not get persisted
- 02:08 PM bug #9772: Improve DTO usage for character matrix
- I got when saving
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/common.ser... - 02:04 PM bug #9772: Improve DTO usage for character matrix
- Katja Luther wrote:
> I also checked the actual nightly build and your test DB and all values are shown.
>
> Now ... - 01:45 PM bug #9772 (In Progress): Improve DTO usage for character matrix
- Now DescriptiveDatasetDto is used and the rowWrapper uses DescriptionDtos as well.
- 01:43 PM bug #9772 (Closed): Improve DTO usage for character matrix
- The character matrix still uses cdm objects for descriptive dataset and descriptions, we need to switch to DTOs as we...
- 04:45 PM bug #9776: Enforce cdm webservice access via https when pages are requested via this schema
- The solution to this problem is to use https also for the "CDM web service URL".
This should be enforced automatical... - 04:38 PM bug #9776 (Closed): Enforce cdm webservice access via https when pages are requested via this schema
- Original subject "kml layer request for https page causes mixed content problem"
e.g. https://cichorieae.e-taxonom... - 03:49 PM bug #9746 (Closed): Remove excluded and unplaced flags from right click menu
- Seems to be fully fixed now.
- 03:42 PM feature request #8028 (Closed): Better representation of web app media in the image gallery
- I moved the open issues handling to new ticket #9775
- 03:25 PM feature request #8028: Better representation of web app media in the image gallery
- please create a new ticket with the results of your experiments. Your findings need more time to discuss them properl...
- 03:41 PM bug #9775 (New): Open issues for web app media in the image gallery
- see #8028#note-18 ff for the open issues
- 03:18 PM bug #9739: Add common name languages preference to DB preferences
- Generally the functionality seems to work now and ticket can be closed.
- 03:17 PM bug #9739 (Feedback): Add common name languages preference to DB preferences
- When trying to override via local settings I get:
~~~
org.eclipse.core.runtime.AssertionFailedException: null arg... - 09:19 AM bug #9739 (Resolved): Add common name languages preference to DB preferences
- Andreas Müller wrote:
> Is this fixed already?
yes - 02:20 PM feature request #9774 (New): aggregate statistics on site visits (Piwik)
- aggregate statistics one site visits are an important measure which has already been requested in #2379
matomo how... - 02:14 PM task #9773 (New): Improve matomo performance
- The matomo instance at https://cybertaxonomy.eu/piwik is extremely slow showing the overview dashboard for E+M fir ex...
- 02:00 PM bug #9710 (Closed): DataIntegrityViolationException after adding a specimen to the matrix
- further discussions on DTO handling were moved to #9772.
This ticket can be closed as it originally handles only t... - 10:06 AM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
- Andreas Müller wrote:
> I get the strange behavior that the matrix only shows the most left factual data column corr... - 01:56 PM Revision faf98509 (taxeditor): ref #9746: also remove doubtful menu entry
- 01:47 PM Revision e128bbe9 (taxeditor): ref #9772: adapt QuantitativeDataDialogComposite to dto usage
- 10:51 AM task #2149 (Worksforme): implement test cases
- tests are already implemented
- 10:11 AM bug #4849: zen_basetheme custom icon size intially not recognized
- still relevant and unsolved
- 10:11 AM Revision 10f4a3fd (cdmlib): ref #9710: avoid NPEs
- 10:05 AM Revision 353c0eee (cdmlib): ref #9758 application.properties for the production environement
- 09:19 AM Revision 32854562 (taxeditor): remove flag handler from fragment.e4xmi
09/19/2021
- 10:01 PM bug #9739: Add common name languages preference to DB preferences
- Is this fixed already?
09/17/2021
- 11:56 PM feature request #9771 (In Progress): Implement Cdm2Cdm for vocabularies
- Needed for loading terms from term server and for moving the character ontology.
- 11:52 PM bug #9346 (Closed): Adding specimen to character matrix fails sometimes
- I tried to add the test specimen again and it worked. So I guess the ticket is correctly fixed.
- 11:24 PM bug #9766: CDM vocabularies should not be editable
- AM:
Wir könnten auch je Klasse ein cdmVocabularyUuids() einführen, die dann alle bekannten CDM VOC uuids zurückgib... - 10:43 AM bug #9766 (Feedback): CDM vocabularies should not be editable
- this is already implemented for languages in #9747. We should implement it for all CDM vocabularies.
- 11:16 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
- I worked with 5.27.0.202109161022 beta as there is no newer version for nightly (build does not work). Also the curre...
- 11:13 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
- Also I get (during save I think, but not sure)
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/re... - 10:34 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
- I get the strange behavior that the matrix only shows the most left factual data column correctly. All other columns ...
- 10:29 PM bug #9710 (Feedback): DataIntegrityViolationException after adding a specimen to the matrix
- Playing around I got
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxonn... - 10:16 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
- Loading seems to be much faster now. Very good!
- 09:56 PM bug #9710 (Resolved): DataIntegrityViolationException after adding a specimen to the matrix
- I put this to resolved as it is easier to find during review this way. We may split the ticket after release if not f...
- 09:08 PM feature request #8325 (In Progress): Create CDM Instance with all CDM core terms
- Created database instance
- 09:04 PM Revision 03e65c4a (taxeditor): rename taxonomic tree to ... trees
- 06:30 PM feature request #424: Implement advanced search
- I marked those issues that seem to be fixed. Should we open new subtickets for the remaining issues?
- 05:46 PM feature request #4118 (Feedback): @NotPartOf Annotation to exclude properties from the permission validation
- Is this still an open issue?
I remember we had another solution for e.g. cache fields. We should link this solutio... - 05:35 PM bug #4849: zen_basetheme custom icon size intially not recognized
- This is not a cdmlib ticket.
Is it still an open issue? - 05:14 PM task #2149 (Feedback): implement test cases
- is this still an open issue?
- 05:00 PM Revision 7c1827b5 (cdmlib-apps): ref #9755 adapt app-import to new cultivar epithet naming
- 04:58 PM feature request #6963 (In Progress): Implement cache strategy for cultivar plant names (done), bacterial names, fungi, etc.
- Cultivar names are mostly implemented, therefore set to "InProgress"
- 04:52 PM feature request #8028: Better representation of web app media in the image gallery
- Should we create new ticket(s) for the open issues or should we move this ticket to an upcoming milestone.
As it i... - 04:49 PM bug #9730 (Closed): Open URL Button is disabled for persisted data
- I tested and it works as expected.
- 03:37 PM feature request #3990 (Closed): [DISCUSS] How to implement citation suggestion to each taxon
- I think we can close this ticket as the source information is implemented as described via sec reference (former last...
- 03:34 PM task #7369 (Closed): Handle taxonomically valueless taxa correctly
- An example for a "valueless" taxon in CDM is https://www.europlusmed.org/cdm_dataportal/taxon/6a572ecd-f989-44a2-96ce...
- 03:29 PM task #7346 (Closed): [CHECK] Use separate area vocabulary for common names
- 03:21 PM bug #7823 (Closed): User Persons are not deduplicated
- This is fixed. No duplicate or unnecessary users were imported from BM. Though there are a couple of users representi...
- 02:58 PM feature request #7801 (Closed): AM: Deduplicate references
- The import did run long time ago. Deduplication was done as far as it was done. As we can't change much here other th...
- 01:27 PM feature request #9770: Discuss symbols for (inverse) misapplications and pro parte synonyms
- Andreas Müller wrote:
> Is there an example dataportal page for inverse pro parte synonyms or even partial synonyms?... - 12:47 PM feature request #9770: Discuss symbols for (inverse) misapplications and pro parte synonyms
- Is there an example dataportal page for inverse pro parte synonyms or even partial synonyms?
- 12:46 PM feature request #9770 (New): Discuss symbols for (inverse) misapplications and pro parte synonyms
- for discussions and examples see #7514
Current symbols for inverse MAN and pro parte synonyms are not very convinc... - 12:50 PM bug #7514 (Closed): Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- The main task of this ticket has been fixed (invert symbols for MAN relationships).
The task to find better symbol... - 12:48 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- Andreas Kohlbecker wrote:
> the test page http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/t... - 12:29 PM feature request #8004 (Closed): Add sortindex to description element
- This has been implemented. Follow-up tickets for TaxEditor and dataportal have been created.
So I close this ticket. - 12:27 PM feature request #9769 (New): Implement sortindex field for description elements in dataportal
- for more details see #8004
- 12:24 PM feature request #9768 (New): Implement sortindex field for description elements in TaxEditor
- For now it could look like this:
There is a label showing the current sortindex
e.g. "Order: 1"
with buttons... - 12:11 PM feature request #7372 (Closed): Allow configuring feature/term tree
- This flag is in use already and no problems occurred so far. So I think we can close this ticket.
- 12:08 PM feature request #8006 (Closed): Improve labels for taxon relationships
- Looks correct in production databases
~~~sql
SELECT r.text, r.abbreviatedLabel, r.label, r.plural, r.language_id,... - 12:02 PM feature request #9767 (Duplicate): Improve labels for concept relationships
- Upps, this duplicates #8007
- 12:01 PM feature request #9767 (Duplicate): Improve labels for concept relationships
- In #8006 labels for taxon relationships like misapplied names or pro parte synonym relationships where updated correc...
- 11:51 AM bug #9762 (Resolved): Handle cultivars correctly in TaxEditor
- Now if ICNCP is selected only the cultivar ranks are available and the fields are displayed depending on the selected...
- 11:22 AM bug #8113 (Closed): Update TypeDesignationStatus labels
- Not sure what this is really about except for the case issues handled in #9263.
Possible issues could be:
* Som... - 10:59 AM feature request #7640: Update ISO country names where necessary
- Andreas Müller wrote:
> @Henning: can you review after next release if everything works as expected for you?
... ... - 10:56 AM feature request #7640: Update ISO country names where necessary
- This should be fixed. Country names are up-to-date and labels are split into (common and short) labels and official l...
- 10:56 AM Revision f4caff64 (taxeditor): ref #9762: handle cultivars correctly in tax editor
- 10:49 AM Revision f7b7b300 (taxeditor): rename feature tree to term trees
- 10:48 AM bug #825: DefinedTermDaoImpl - missleading method names
- This is fixed. Please review.
As the old method findByTitle which did override the same labeled parent method seem... - 10:24 AM bug #825 (Resolved): DefinedTermDaoImpl - missleading method names
- Applied in changeset commit:cdmlib|0dd6415a7665115b465b687879a987b7d70af7ed.
- 10:47 AM Revision 30023bc4 (taxeditor): ref #6774: fix export wizard for owl export
- 10:45 AM feature request #9747 (Closed): Make languages editable in TaxEditor
- This works as expected.
For the disabling of other CDM vocabularies I added a new ticket. If disabling was easy to... - 10:35 AM bug #9759 (Closed): Person deduplication does not work due to new collectorTitleCache field
- I tested in TaxEditor and it seems to work.
- 10:24 AM Revision 0dd6415a (cdmlib): fix #825 rename method that searches by representation label in term dao
- 10:23 AM Revision 998924cb (cdmlib): minor
- 10:00 AM Revision bbfc0e17 (cdmlib): cleanup
- 10:00 AM Revision 4e69f890 (cdmlib): ref #9014 allow any word with number as detail in parser
- 09:36 AM bug #9237 (Closed): FeatureTree SortIndex updater creates wrong sortindex
- I tested again and could not see any errors. So I close the ticket and move back to fixing milestone.
Reopen if is... - 08:27 AM feature request #9761 (Closed): Add cultivarGroup as field for handling cultivar groups and grex
- 08:26 AM task #9752 (Closed): Import for Flora of Mexico
- 08:25 AM Revision 1b9f0b93 (cdmlib-apps): ref #9752 add mexico reference updater and mexico datasource
- 07:52 AM Revision 74d2984c (cdmlib): cleanup
- 07:50 AM Revision 3ca53aa1 (cdmlib): cleanup
- 07:26 AM Revision ba7678ee (cdmlib): ref #9758 try to fix dependency issue in mailing test dependencies
- 07:04 AM Revision 38455235 (cdmlib): cleanup
09/16/2021
- 05:10 PM Revision 3ac9e408 (cdmlib): ref #9758 option to define custom configurations in test and production systems#
- 04:40 PM Revision 82da5e6c (cdmlib): ref #9758 configuration for sending emails with smtp properties
- 03:44 PM feature request #9758 (Resolved): EmailService implemented
- Applied in changeset commit:cdmlib|bcf94376128f49035cca1927d59e04c0016bdc7c.
- 03:38 PM feature request #9758: EmailService implemented
- the mail configuration section in a aspplication.properties file for the currently implemented `SendEmailConfigurer`
... - 03:44 PM Revision bcf94376 (cdmlib): fix #9758 configuration for sending emails with JavaMailSenderImpl
- 03:44 PM Revision 1574f983 (cdmlib): note on manual anttask execution
- 12:02 PM Revision 26557b05 (cdmlib): update cached cdm mapping to 5.27.0
- 12:00 PM bug #9765 (Closed): external-links weight range too small and link fiels maxlength to small
- 11:44 AM bug #9765 (Closed): external-links weight range too small and link fiels maxlength to small
- 11:54 AM Revision 1ef72ae8 (cdm-dataportal): Merge tag '5.26.7' into develop
- tagging HFX
- 11:54 AM Revision ebdf90b5 (cdm-dataportal): Merge branch 'hotfix/5.26.7'
- 11:54 AM Revision cac6121d (cdm-dataportal): ref #9765 bigger weight range for ext-links and more allowed charagters for link field
- 11:54 AM Revision 5683cde6 (cdm-dataportal): bigger weight range for ext-links
- 11:53 AM Revision d9086dd9 (cdm-dataportal): ref #9765 bigger weight range for ext-links and more allowed charagters for link field
- 11:40 AM Revision 15dfa454 (cdm-dataportal): bigger weight range for ext-links
- 11:35 AM Revision c0e9dfbb (taxeditor): ref #9755 adapt taxeditor to cultivarEpi changes
- 11:13 AM Revision 9f8cc8f0 (taxeditor): update taxeditor test H2 to 5.27.0
- 11:11 AM Revision 2d40c638 (cdm-vaadin): update vaadin to 5.27.0
- 11:09 AM Revision 04429991 (cdmlib): update cdmlib test H2 to 5.27.0
- 11:08 AM Revision ae57f5e3 (cdm-dataportal): Merge tag '5.26.6' into develop
- tagging hotfix
- 11:08 AM Revision cf62482d (cdm-dataportal): Merge branch 'hotfix/5.26.6'
- 11:08 AM Revision 588e5e89 (cdm-dataportal): fix #9763 adapting broken exist function to new data scheme
- 11:04 AM Revision 1684fbfa (cdmlib): minor
- 11:01 AM Revision a1646aec (cdmlib): change to model version 5.27.0
- 11:01 AM Revision a0c48c4a (cdmlib): ref #9761 move cultivar info to new group field where necessary
- 11:01 AM Revision 388be066 (cdmlib): ref #7640 fix update script for ISO country update
- 11:01 AM Revision 6cfc0581 (cdmlib): ref #9755 update cultivarName->cultivarEpithet
- 11:01 AM Revision 58a72ae6 (cdmlib): ref #7640 include titleCache for country label update
- 11:01 AM Revision 3ded2197 (cdmlib): ref #9757 fix cultivar group parser text encoding
- 11:01 AM Revision bf56e79a (cdmlib): cleanup
- 11:01 AM Revision dc7815d5 (cdmlib): ref #7640, ref #4209 update country labels and split label from official title (still handled in description)
- 11:01 AM Revision bd2f30c9 (cdmlib): ref #9755 add abbrev to cultivar group representation
- 11:01 AM Revision f7e576ba (cdmlib): ref #9761 add cultivarGroup column
- 09:50 AM feature request #7640 (Resolved): Update ISO country names where necessary
09/15/2021
- 11:04 PM feature request #4209 (In Progress): Better handling of labels, abbreviations and descriptions in ISO 3166-1 (country) terms
- 04:59 PM Revision 5ab7edf7 (cdm-dataportal): fixing git auto-merge error
- 04:51 PM Revision c906cdf5 (cdm-dataportal): Merge tag '5.26.5' into develop
- tagging hotfix
- 04:51 PM Revision 81cf0d42 (cdm-dataportal): Merge branch 'hotfix/5.26.5'
- 04:51 PM Revision 712d7217 (cdm-dataportal): ref #9764 autocomplete for category field
- 04:51 PM Revision 43f4c619 (cdm-dataportal): ref #9764 adding missing category field
- 04:50 PM bug #9764 (Closed): external-links form misses category field
- 04:12 PM bug #9764 (Closed): external-links form misses category field
- add a field for category with auto suggest combobox
- 04:48 PM Revision 955f2191 (cdm-dataportal): ref #9764 autocomplete for category field
- 04:15 PM Revision 73780c64 (cdm-dataportal): ref #9764 adding missing category field
- 04:10 PM bug #9763 (Closed): adding new external link broken
- 04:09 PM bug #9763 (Resolved): adding new external link broken
- Applied in changeset commit:cdm-dataportal|3700d60368ddb0b49899cbfbdb59e6a7b5999306.
- 03:58 PM bug #9763 (Closed): adding new external link broken
- adding a new external link fails with a WSOD
- 04:09 PM Revision 3700d603 (cdm-dataportal): fix #9763 adapting broken exist function to new data scheme
- 03:48 PM feature request #9761 (In Progress): Add cultivarGroup as field for handling cultivar groups and grex
- 01:55 PM feature request #9761 (Closed): Add cultivarGroup as field for handling cultivar groups and grex
- This is needed as in cultivar names the cultivar epithet can exist together with cultivar group epithet and/or grex e...
- 03:45 PM bug #9762 (Closed): Handle cultivars correctly in TaxEditor
- copied from #9755
* If ICNCP is selected make only cultivar ranks (#6387) available
* If a cultivar rank is selec... - 01:53 PM Revision a26701d8 (cdm-dataportal): Merge tag '5.26.4' into develop
- tagging hotfix 5.26.4
- 01:52 PM Revision dfe044b2 (cdm-dataportal): Merge branch 'hotfix/5.26.4'
- 01:52 PM Revision 9bd9c1f2 (cdm-dataportal): fix #9760 fixing mime-type detection
- 01:43 PM bug #9760 (Closed): image gallery shows webapp icons instead of thumbnails
- 01:42 PM bug #9760 (Resolved): image gallery shows webapp icons instead of thumbnails
- Applied in changeset commit:cdm-dataportal|c2162a7475c7dac6d90a663403cc23a6be054a75.
- 01:41 PM bug #9760 (Closed): image gallery shows webapp icons instead of thumbnails
- see :
 - 01:42 PM Revision c2162a74 (cdm-dataportal): fix #9760 fixing mime-type detection
- 01:32 PM Revision 5bf13b75 (taxeditor): ref #9710: missed adaption in StructuredAggregationConfigurationWizard
- 01:00 PM Revision 66889a42 (taxeditor): ref #9710: do not use cdm objects for dds and descriptions in character matrix
- 12:29 PM Revision 71559ffe (cdmlib): ref #9710: switch to dtos for descriptive data set and descriptions for character matrix
- 11:30 AM Revision a8d7b69f (cdmlib): fix #9759 fix not existing protectedCache field in persistence matcher
- 10:56 AM bug #9759 (Resolved): Person deduplication does not work due to new collectorTitleCache field
- Applied in changeset commit:cdmlib|7cb329fc60af691dd901f0cfb66bad9307cbc0ae.
- 10:36 AM bug #9759 (Closed): Person deduplication does not work due to new collectorTitleCache field
- ... also check if this is the case for nomenclaturalTitleCache
- 10:55 AM Revision 7cb329fc (cdmlib): fix #9759 fix missing deduplication for parsed person (and maybe also team)
- 10:42 AM Revision 65b3409e (cdmlib): cleanup
- 10:36 AM feature request #9747: Make languages editable in TaxEditor
- The doubled separators are removed. Please review.
- 10:35 AM feature request #9747: Make languages editable in TaxEditor
- Andreas Müller wrote:
> The menu for vocabularies and term trees should use the same order. Please move the "languag... - 10:35 AM feature request #9747: Make languages editable in TaxEditor
- Andreas Müller wrote:
> Functionallity works and ticket can be closed.
>
> However, the Language class has 1 more... - 10:34 AM feature request #9747 (Resolved): Make languages editable in TaxEditor
- Applied in changeset commit:taxeditor|5cabd426f71e5cc0254e32e414ff7afc26b92ed5.
- 09:52 AM feature request #9747: Make languages editable in TaxEditor
- Andreas Müller wrote:
> According to commit 53e555624aa688 there is lots of commented code now in OpenDefinedTermEdi... - 10:34 AM Revision 5cabd426 (taxeditor): fix #9747: add language detail element and smaller changes in menu
09/14/2021
- 09:52 PM bug #8936: Improve default distribution formatting
- Do you have some example links on test server?
- 09:51 PM feature request #9747: Make languages editable in TaxEditor
- According to commit 53e555624aa688 there is lots of commented code now in OpenDefinedTermEditorHandlerE4.java . Can t...
- 09:49 PM feature request #9747: Make languages editable in TaxEditor
- Functionallity works and ticket can be closed.
However, the Language class has 1 more attribute iso639_1 which ref... - 09:44 PM feature request #9747: Make languages editable in TaxEditor
- Minor issue:
There is a separator below "New" but no other group or item:
Can we remov... - 09:34 PM feature request #9747 (Feedback): Make languages editable in TaxEditor
- The menu for vocabularies and term trees should use the same order. Please move the "language" menu item to the same ...
- 10:43 AM feature request #9747: Make languages editable in TaxEditor
- Now the implementation uses the cdmVocabularyUuid method.
- 09:32 PM feature request #7646 (Closed): Implement parser and formatter for "hort."
- I tested in editor and it also works there. So I close the ticket.
- 09:18 PM task #9744: Find suitable name for the Freetext- or Name-Editor
- HOORAY !!!!!
- 09:12 PM task #9744 (Closed): Find suitable name for the Freetext- or Name-Editor
- We decided to use "Taxon Editor" for the formerly labeled "Name Editor" and not to change "bulk editor" labels for no...
- 09:10 PM task #9744 (Resolved): Find suitable name for the Freetext- or Name-Editor
- WGB:
einverstanden, das ist eine gute Lösung, ich wäre nicht für „Freetext“.
Eine Frage wäre noch, ob wir bei „B... - 04:37 PM feature request #9757 (In Progress): Make cultivars, cultivar groups and grexes parsable
- 09:47 AM feature request #9757 (Closed): Make cultivars, cultivar groups and grexes parsable
- See http://www.actahort.org/chronica/pdf/sh_10.pdf
Allowed characters: Art. 21.18 - 04:14 PM feature request #6387: [Rule] Rank rule for CultivarPlantNames
- On convar see https://github.com/tdwg/tnc/blob/master/tcs-deconstructed/TaxonomicRank.md#taxonomicrankcultivatedplant...
- 03:17 PM feature request #9758 (In Progress): EmailService implemented
- 03:17 PM feature request #9758: EmailService implemented
- We can use the `org.springframework.mail.javamail.JavaMailSenderImpl` instead of implementing our own service
- 03:10 PM feature request #9758 (Closed): EmailService implemented
- A service to send emails
Configuration of the following properties should be possible via a Spring-PropertySource:... - 02:56 PM feature request #9755 (In Progress): Open issues for cultivar handling
- Existing cases:
~~~
SELECT *
FROM TaxonName tn INNER JOIN DefinedTermBase r ON r.id = tn.rank_id
WHERE r.uuid =... - 02:33 PM Revision edd21192 (cdmlib): ref #9757 further improve cultivar parsing
- 02:32 PM Revision df6429b7 (cdmlib): cleanup
- 12:34 PM Revision d9add188 (cdmlib): ref #9754 , ref #9757 further improve cultivar name parsing and formatting
- 11:05 AM bug #9452 (Closed): Name Type Editor: allowed combination of fields
- 10:54 AM bug #9452: Name Type Editor: allowed combination of fields
- Works as expected, the bug is fixed, fine. Ticket can be closed.
- 11:04 AM feature request #9706 (Closed): Name Editor for Sections: show simple form for in-authors without full citation
- 10:59 AM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
- Works as expected. Ticket can be closed.
- 10:06 AM Revision 3bed313a (taxeditor): revert changes because cdmlib still missing
- 09:57 AM Revision 487f1047 (taxeditor): fix #9747: use language uuid to check for managed cdm vocabulary
- 09:49 AM Revision 7d2d06a9 (cdmlib): ref #9757 first implementation of cultivar parsing
- 09:45 AM Revision b668dc22 (cdmlib): cleanup
- 09:44 AM Revision d515ad59 (cdmlib): ref #9754 first implementation for cultivar formatter
09/13/2021
- 02:07 PM bug #8936 (Resolved): Improve default distribution formatting
- please review
- 02:07 PM bug #8936: Improve default distribution formatting
- The following portals need to be checked after the release:
~~http://portal.cybertaxonomy.org/diptera/~~ ':
~~htt... - 01:41 PM bug #8936: Improve default distribution formatting
- New parameter `item_suffix` with default value "`: `"
- 01:36 PM bug #8936 (In Progress): Improve default distribution formatting
- need to solve #9756 in the context of this ticket since the issues are more closely related than initially assumed
- 08:45 AM bug #8936 (Closed): Improve default distribution formatting
- 08:44 AM bug #8936 (Resolved): Improve default distribution formatting
- Applied in changeset commit:cdm-dataportal|abf4371572af20f9f408c45fc893b75695fb169e.
- 02:00 PM Revision 262f020c (cdm-dataportal): ref #8936 introducing additional hierarchical distribution style parameter + migration of old styles
- 02:00 PM Revision 5777b93e (cdm-dataportal): ref #9756 introducing additional hierarchical distribution style parameter + migration of old styles
- 01:43 PM bug #9756 (Duplicate): Footnote key placement in hierarchical distributions improved
- closing as duplicate of #8936
- 08:35 AM bug #9756 (Duplicate): Footnote key placement in hierarchical distributions improved
- See:
the footnote key should come before the colon
Example: https://132.248.13.83/cd... - 01:39 PM Revision b6d8f977 (cdmlib): ref #9747 add getCdmVocabularyUuids to Language
- 01:27 PM Revision 7a56df2b (cdmlib): ref #9747 add getCdmVocabularyUuids to Language
- 01:27 PM Revision 6724ea84 (cdmlib): cleanup
- 01:20 PM feature request #9747: Make languages editable in TaxEditor
- To add the language editor can be done in 5 minutes, but to allow the editing for non cdm languages and do not allow ...
- 01:17 PM feature request #9747 (Resolved): Make languages editable in TaxEditor
- Applied in changeset commit:taxeditor|53e555624aa688350d4c89e43e8a3f172e534022.
- 01:17 PM Revision 53e55562 (taxeditor): fix #9747: add language vocabulary editor
- 08:44 AM Revision abf43715 (cdm-dataportal): fix #8936 new default format for hierarchical distributions
09/11/2021
- 03:52 PM feature request #9754 (In Progress): Adapt cache strategy to support cultivar names
- 09:41 AM feature request #9754: Adapt cache strategy to support cultivar names
- Further problems for cultivar groups are:
* The "Group" epithet may need translation (Art. 15.1) - alternatively t... - 09:00 AM feature request #9754: Adapt cache strategy to support cultivar names
- There is a problem that cultivar names to not have a "parent rank" and therefore it needs to be computed which epithe...
- 08:55 AM feature request #9754 (Closed): Adapt cache strategy to support cultivar names
- copied form #6963
We need a cache strategy for Cultivar Status (Art. 14), Group Status (Art. 15) and Grex Status (... - 03:08 PM feature request #9755 (In Progress): Open issues for cultivar handling
- ~~Cultivar names, groups and grex are currently not parsable~~ (#9757)
~~Cultivar names, groups and grex need to b... - 03:06 PM feature request #5981: Add abbreviation to Rank "Cultivar"
- Note: according to the code 'cv.' should not be used for cultivar names (anymore?)
09/10/2021
- 07:47 PM Revision 5b238ca8 (cdm-vaadin): ref #6732 fixing layout problems in valo-theme with native selects
- 05:47 PM Revision ad6c211a (cdm-vaadin): ref #6732 rank selector offering compact and full list of ranks
- 08:13 AM Revision 09e946a5 (taxeditor): Merge branch 'hotfix/5.26.1'
09/09/2021
- 06:02 PM bug #9701 (Closed): Order and display of different typifications for one name in one reference
- 04:52 PM bug #9701: Order and display of different typifications for one name in one reference
- Working not exactly as expected, but a little bit better :)
The colours are nice, the plural thing is also solved.
... - 02:40 PM Revision 3154576c (taxeditor): ref #9704: fix NPE when moving node to root
- 02:25 PM bug #9452: Name Type Editor: allowed combination of fields
- please review
- 02:25 PM bug #9452 (Resolved): Name Type Editor: allowed combination of fields
- Applied in changeset commit:cdm-vaadin|684d6197df0466dceb8ba592d5e4562593060a8a.
- 02:25 PM Revision 684d6197 (cdm-vaadin): fix #9452 consistend an sensible handling of name type status flags
- 02:18 PM bug #9753 (New): New adapted wizard(s) for exports/imports using the generic wizard
- Some exports and imports still use the generic wizard for exports/imports using the boolean attributes of the configu...
- 02:09 PM Revision 33545aa0 (cdmlib): improve attribute names and handle all name identifier in cdmlight
- 01:42 PM Revision 99814cc6 (cdm-vaadin): fixing LIE caused by new source structure in designationSource
- 01:36 PM Revision 2b76987d (cdm-vaadin): fixing typo
- 01:34 PM Revision 819da7cb (taxeditor): adapt method name to label of checkbox
- 01:31 PM Revision 16ff3561 (cdmlib-apps): cleanup
- 01:30 PM Revision fb00e77a (cdmlib-apps): ref #9752 adapt mexico import for flora-of-mexico import
- 01:22 PM Revision 632d2f2e (cdmlib): ref #9752 make it possible to add source with original information for imports
- 01:21 PM Revision 7f5ffbcf (cdmlib): ref #7646 , ref #9752 make "hort." parseable
- 01:20 PM feature request #7646 (Resolved): Implement parser and formatter for "hort."
- The parser has been implemented for the flora mexico import (#9752). A formatter is not necessary as we do not use a ...
- 01:17 PM feature request #6677 (Rejected): Add "hort." flag to Botanical names
- For the above reasons adding the flag is rejected.
- 01:13 PM Revision ce64cc74 (cdmlib): ref #9752 remove warning for getTitleWithoutYearAndAuthor for some refTypes
- 01:11 PM task #9752 (Closed): Import for Flora of Mexico
- 12:37 PM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
- please review
- 12:37 PM feature request #9706 (Resolved): Name Editor for Sections: show simple form for in-authors without full citation
- Applied in changeset commit:cdmlib|051b6f6e98d82d69bd8ffefdd0c0df7d1e5958ad.
- 12:13 PM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
- Andreas Kohlbecker wrote:
> this behavior should be activated when TaxonNamePopupEditorMode.NOMENCLATURALREFERENCE_S... - 12:36 PM Revision 051b6f6e (cdmlib): fix #9706 reducing field visibility of sections to authors, pages and inReference
- 12:34 PM task #9744: Find suitable name for the Freetext- or Name-Editor
- Die Verwechslungsgefahr zwischen "Name Editor" und "Name Bulk Editor" kommt vermutlich auch daher, dass bei den Bulke...
- 10:51 AM task #9744: Find suitable name for the Freetext- or Name-Editor
- WGB:
“Name Editor” ist tatsächlich historisch, und muss immer so erklärt werden. Einen technischen Namen („Freetex... - 11:12 AM bug #9751: [CdmLight] Exported identifier types should be configurable
- AM:
... wobei ich mir nicht ganz sicher bin, wie dringend wir die brauchen. Wenn die Identifier in eigener Tabelle... - 10:55 AM bug #9751 (New): [CdmLight] Exported identifier types should be configurable
- If all identifiers can be exported (see #9750), it should be configurable which types are exported.
- 10:53 AM bug #9750 (New): [CdmLight] Export all name identifier
- Actually only IPNI, Tropicos and WFO identifiers are exported, but the export should handle all kind of identifiers.
- 10:38 AM bug #9749 (Closed): NPE when opening SpecimenImportView
- Works as expected now.
- 09:30 AM bug #9749 (Resolved): NPE when opening SpecimenImportView
- Applied in changeset commit:taxeditor|51dfe6f454155927ac4d50c50474d8d13c3e2bd4.
- 09:07 AM bug #9749 (Closed): NPE when opening SpecimenImportView
- When opening the biocase or gbif import view:
~~~ text
last remote method : http://160.45.63.230:80/cdmserver/car... - 10:38 AM Revision c7ab12a6 (cdmlib): ref #9701 method to find the highest type status in a TypeDesignationWorkingSet
- 10:33 AM Revision 057b35b0 (cdmlib): ref #9701 taggedText to string method with exclude option
- 10:24 AM bug #9746: Remove excluded and unplaced flags from right click menu
- Related to this ticket: if the doubtful flag is set in the taxon node dialogue the navigator seems not to be refreshe...
- 10:16 AM bug #9746 (Feedback): Remove excluded and unplaced flags from right click menu
- The menu still shows the menu entries but disabled:
- 09:52 AM Revision 9eeecf39 (taxeditor): fix #9749: fix NPE when opening specimen import view
- 09:15 AM Revision 51dfe6f4 (taxeditor): fix #9749: fix NPE when opening specimen import view
- 08:49 AM Revision 7723d3d3 (taxeditor): Updated version in pom / project files to taxeditor version : 5.26.1 and cdmlib version : 5.26.0
09/08/2021
- 10:16 PM bug #9701 (Resolved): Order and display of different typifications for one name in one reference
- please review
- 03:26 PM bug #9701: Order and display of different typifications for one name in one reference
- Other display issues, related to #9308, can be seen here:
 - 10:15 PM Revision 4786c609 (cdm-vaadin): ref #9701 defined order of typifications in registration workingset editors
- 05:11 PM Revision a4ffd5b8 (cdm-vaadin): ref #9701 better display of typifications in registration workingset editors
- 03:08 PM feature request #9748 (New): Refactor identifiers
- Currently we have the Identifier class (Identifier string + type) and specific classes for DOI, ORCID, LSID etc used ...
- 02:17 PM task #8438 (Closed): remove featureTree/* web services in August 2021 if they are unused
- all featureTree/* web services removed
- 02:17 PM task #8438 (Resolved): remove featureTree/* web services in August 2021 if they are unused
- Applied in changeset commit:cdmlib|567659e868b4bc34d54aa11c03f3db9ee78c4334.
- 02:10 PM task #8438: remove featureTree/* web services in August 2021 if they are unused
- `/featureTree` is no longer being used, checked with `zgrep "/featureTree" cdm-server.2021*`
- 02:16 PM Revision 567659e8 (cdmlib): fix #8438 removing all featureTree/* web services
09/07/2021
- 03:28 PM Revision fd958579 (cdmlib): ref #9747 add language to TermType.getEmptyDefinedTermBase
- 03:26 PM feature request #9747 (Closed): Make languages editable in TaxEditor
- Currently languages are not yet editable in TaxEditor.
For the CDM this is correct. But other languages should be ...
09/06/2021
- 03:56 PM task #9744: Find suitable name for the Freetext- or Name-Editor
- AM:
Freitext-Editor finde ich persönlich nicht schlecht, höchstens, außer das in Zukunft auch mal andere Freitext ... - 03:43 PM task #9744: Find suitable name for the Freetext- or Name-Editor
- >Name-Editor is being used in the documentation for historic reasons.
Historically Cherian was using this term int... - 03:22 PM task #9744: Find suitable name for the Freetext- or Name-Editor
- Ein älterer Thread zum Thema:
WGB:
ok, verstanden. Ich finde finde den Begriff Taxon Node für die konkrete Stel... - 10:46 AM task #9744: Find suitable name for the Freetext- or Name-Editor
> Also Freitext Editor?
>
> @Katja Hast du die Email-Diskussion zu diesem Thema mit Walter denn gefunden und zu ...- 03:45 PM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- can be reviewed from 7.9.21 on
- 03:44 PM task #9308 (Resolved): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- Applied in changeset commit:cdm-vaadin|574886857ce6fde57a478eb2ae3477eaa72ebd11.
- 03:43 PM Revision 57488685 (cdm-vaadin): fix #9308 more structured formatting of type labels and removing "designated by ..."
- 03:04 PM feature request #8979: Prevent misuse of field initial for personal names
- ready for review on 7.9.21
- 03:02 PM feature request #8979 (Resolved): Prevent misuse of field initial for personal names
- Applied in changeset commit:cdm-vaadin|e1e73a5eae7239539b205b44b365b52c591ba21d.
- 03:02 PM Revision e1e73a5e (cdm-vaadin): fix #8979 tooltip descriptions for all person fields
- 12:36 PM bug #9745 (Closed): pre-configured map layers using https
- all map layers are switched to https
- 12:18 PM Revision 961d35b0 (cdm-dataportal): updating documentation
- 12:14 PM Revision f568d5e4 (cdm-dataportal): Merge tag '5.26.3' into develop
- tagging release 2.26.3
- 12:14 PM Revision 27989fb5 (cdm-dataportal): Merge branch 'hotfix/5.26.3'
- 12:14 PM Revision fe4ffeba (cdm-dataportal): ref #9745 switching geo.cybertaxonomy.org to https
- 10:33 AM bug #9746: Remove excluded and unplaced flags from right click menu
- Please review. I also fixed the refresh problem, so now the menu should show set/remove menu item correctly immediate...
- 10:31 AM bug #9746 (Resolved): Remove excluded and unplaced flags from right click menu
- Applied in changeset commit:taxeditor|dc7a943c33e9a733dbf51ba7e86eaf91d7ff2ec2.
- 08:30 AM bug #9746 (Closed): Remove excluded and unplaced flags from right click menu
- The flags unplaced and excluded need more informations therefore it is does not make sense to have it in the right cl...
- 10:21 AM Revision dc7a943c (taxeditor): fix #9746: remove unplaced and excluded from right click menu of navigator
09/03/2021
- 05:51 PM Revision e9e677a6 (cdm-dataportal): Merge tag '5.26.2' into develop
- tagging release 5.26.2
- 05:50 PM Revision f9fc9292 (cdm-dataportal): Merge branch 'hotfix/5.26.2'
- 05:50 PM Revision 47cd8305 (cdm-dataportal): ref #9745 switching all map layers to https (except for geo.cybertaxonomy.org)
- 05:49 PM bug #9745: pre-configured map layers using https
- the correct URL for http://cybertaxonomy.org:8082/mapproxy/service is http://geo.cybertaxonomy.org/mapproxy/service a...
- 05:01 PM bug #9745: pre-configured map layers using https
- http://cybertaxonomy.org:8082/mapproxy/service
does not yet support https !!! - 04:55 PM bug #9745 (Closed): pre-configured map layers using https
- the maps layers provided in are still using http, this results in mixed in http content in the browser like http://b....
- 01:53 PM task #9744 (Closed): Find suitable name for the Freetext- or Name-Editor
- So far, we don't have a commonly accepted name for the "Freetext- or Name- or Wathever-Editor" which is consistently...
- 11:18 AM Revision 2ec64080 (cdmlib): cleanup
- 11:03 AM bug #9742: embedded h2 database in server mode for connection pooling
- This is probably more a cdmlib issue then a taxeditor issue
- 10:18 AM bug #9742 (New): embedded h2 database in server mode for connection pooling
ich versuche gerade, eine H2 Datenbank auf meinem Laptop zu installieren, in der Hoffnung, dass ich offline an der ...- 10:43 AM bug #9463: UniversalViewer causes jQuery version conflict and breaks maps
- using the UV webpack should solve the problem
- 10:42 AM bug #9743: Universal Viewer - metadata component gets lost on leaving fullscreen mode
- * a bug in our UV version?
* would using UV as webpack help? see also #9463 - 10:38 AM bug #9743 (New): Universal Viewer - metadata component gets lost on leaving fullscreen mode
- Norbert: "Wenn ich im Cichorieae-Portal vom Vollbild-View des Viewers auf die verkleinerte Fensteransicht zurückschal...
09/02/2021
- 03:42 PM bug #9729 (Closed): Incomplete bean property Team.nomenclaturalTitleCache
- 12:59 PM bug #9729: Incomplete bean property Team.nomenclaturalTitleCache
- seems to be working in cdm-vaadin with the latest adaptions. I could not find any problems.
- 09:23 AM Revision 0cee5989 (taxeditor): code cleaning, removing link with taxon in specimen tree editor
- 09:16 AM Revision 485f856b (taxeditor): missing l10n
- 12:53 AM feature request #8028: Better representation of web app media in the image gallery
- Is there a follow-up or a already-handled-in ticket for the missing metadata issue?
- 12:49 AM feature request #8028 (Feedback): Better representation of web app media in the image gallery
- I tried this with taxon media (the original usecase from the description of this ticket).
On caryo_spp /test serve...
09/01/2021
- 11:45 PM bug #9741: cdm_dataportal_shortname_of truncates uninomial with not abbreviated author strings and causes other odds
- Also #6203 might be relevant for this issue.
- 02:40 PM bug #9741 (New): cdm_dataportal_shortname_of truncates uninomial with not abbreviated author strings and causes other odds
- for example in https://132.248.13.83/cdm_dataportal/taxon/ed358b48-4e90-40d6-ba5f-10b81f18b72b
Asparagales Link is t... - 01:57 PM feature request #7749 (Rejected): Add "Link with taxon selection" as an icon to the toolbar of the specimen tree editor
- This will not be implemented for the reasons mentioned in #9732 (last issue). Instead we do have taxon navigator "ope...
- 01:55 PM bug #9723 (Duplicate): Specimen tree editor: Function of "Link with taxon selection" in context menu unclear
- This duplicates the last issue in #9732 and is fixed in the meanwhile (menu entry was removed).
- 01:43 PM Revision 3de8ad27 (taxeditor): ref #9732: remove link with taxon selection menu item
- 01:41 PM bug #9732: Open issues in specimen tree editor
- Katja Luther wrote:
> • Die Funktionsweise von „Link with taxon selection“ ist mir nicht klar. Bezieht sich das auf ... - 01:36 PM bug #9732: Open issues in specimen tree editor
- NoK:
* Filter "All unit types" statt "Unknown unit type" wäre in der Tat logischer
* "Im search gibt’s den Type... - 01:33 PM bug #9740 (Worksforme): Adapt Motive(Motif) to Subject in data portal
- for details see #9732#note-3
- 01:18 PM bug #9728: NoSuchMethodException Team.areNomenclaturalTitle() breaks authortem editors
- I made some adaptations to the changes. See also #9729#note-4
- 01:16 PM bug #9729: Incomplete bean property Team.nomenclaturalTitleCache
- Please check if this fullfills the requirements in vaadin.
- 01:15 PM bug #9729 (Resolved): Incomplete bean property Team.nomenclaturalTitleCache
- I adapted the changes so that it is similar to IdentifiableEntity.titleCache implementation.
This means:
* the ... - 01:10 PM Revision 9d57197e (cdmlib): Cleanup and javadoc
- 01:08 PM Revision c25885b8 (cdmlib): ref #9729, #9728, #9664 remove deprecated method setNomenclaturalTitle
- 01:03 PM Revision a32f4c74 (cdmlib): ref #9729, #9728, #9664 remove calls to deprecated method setNomenclaturalTitle
- 12:47 PM Revision 5e7ceaad (cdmlib): ref #9729, #9728, #9664 Adapt handling of nomenclaturalTitleCache setter and javadoc
- 12:37 PM Revision efd417dd (cdmlib): cleanup
- 11:08 AM Revision a931e823 (taxeditor): load availbale languages
- 11:04 AM Revision 279f5ec4 (taxeditor): ref #9739: use common name languages for combo and adapt pref page
- 09:56 AM bug #9739: Add common name languages preference to DB preferences
- This exception comes from the multilanguage prefernce, but needs to be fixed as well.
08/31/2021
- 11:09 PM Revision fd47e8cf (taxeditor): cleanup
- 11:08 PM bug #9739 (Feedback): Add common name languages preference to DB preferences
- Now it exists, but when saving I got:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am... - 09:09 AM bug #9739 (Resolved): Add common name languages preference to DB preferences
- 09:05 AM bug #9739: Add common name languages preference to DB preferences
- Maybe the editor was not build?
I checked the nightly build and the common name languages where available for DB p... - 05:20 PM bug #9732: Open issues in specimen tree editor
- > Als Derived Unit – Media specimen – Kind of media gibt’s nur “Specimen scan”. Ich fände auch hier “Still image” gut...
- 05:18 PM bug #9732: Open issues in specimen tree editor
- > Der Titel des Bildes im Tree ist das Specimen-Aufsammlungs-Zitat, das ist etwas unglücklich (und repetitiv), finde ...
- 05:08 PM bug #9732: Open issues in specimen tree editor
- AM:
nur zu motive <-> motif. Bist du da sicher. Laut https://dict.leo.org/englisch-deutsch/motive ist motive eher ... - 09:15 AM bug #9735 (Closed): [CdmLight] Add type specimen to specimen table
- 09:13 AM bug #9645 (Closed): CDM Light: Add Type Statement Reference to homotypicalGroup.csv
- 09:08 AM bug #9737 (Closed): [CdmLight] Add two dummy lines for empty tables
- 09:07 AM bug #9736 (Closed): [CdmLight] Add new table for type designation to specimen relationship
- This ticket can be closed.
08/30/2021
- 09:07 PM bug #9263 (Closed): Unify case for type designation status
- Andreas Kohlbecker wrote:
> Mir ist nicht klar was ich hier machen soll. Die im Kommentar 3 erwähnten FIXMEs sind al... - 08:23 PM bug #9704 (Closed): Several issues when trying to move taxon with dialogue
- Both issues seem to be fixed.
- 08:20 PM Revision 0351b2c7 (cdmlib): cleanup
- 08:18 PM Revision c11c91e6 (taxeditor): cleanup
- 07:41 PM bug #9736 (In Progress): [CdmLight] Add new table for type designation to specimen relationship
- As there are already commits on this ticket it seems to be at least "In Progress".
If resolved already please adapt ... - 07:34 PM bug #9739 (Feedback): Add common name languages preference to DB preferences
- The current db preferences menu only shows "multi-language support" but not "languages for common names".
Something ...
08/27/2021
- 11:26 AM bug #9738 (Closed): NomenclaturalSourceFormatter throws OutOfMemory with only protected titleCache
- 09:53 AM bug #9739 (Resolved): Add common name languages preference to DB preferences
- this should be done, please review.
- 09:52 AM bug #9739 (Closed): Add common name languages preference to DB preferences
- The common name languages should be available as db preferences.
- 09:46 AM Revision 7f73ebf0 (taxeditor): add common name language pref to db preferences
08/26/2021
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