Activity
From 08/23/2021 to 09/21/2021
09/21/2021
- 11:14 PM bug #9772: Improve DTO usage for character matrix
- The smv.type_id IS NULL issue seems to be solved now. But there is another critical issue: the unit_id is often null ...
- 03:56 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> There seems to be another issue: when I change only 1 record 8 new records are added in the ... - 11:10 PM task #3346 (Resolved): Team.addListenerForTeamMember(Person member) adds idle listener
- 10:48 PM bug #9762: Handle cultivars correctly in TaxEditor
- There is the general issue that the details view does not update correctly when the nomenclatural code or ranks are c...
- 10:42 PM bug #9762: Handle cultivars correctly in TaxEditor
- Andreas Müller wrote:
> Works correctly now except for 1 open issue: if cultivar epithet or cultivar group are chang... - 10:40 PM bug #9762: Handle cultivars correctly in TaxEditor
- Works correctly now except for 1 open issue: if cultivar epithet or cultivar group are changed the name Cache and the...
- 10:20 PM feature request #9754: Adapt cache strategy to support cultivar names
- Only open issue is the correct handling of rank grex
- 01:57 PM feature request #9754 (Resolved): Adapt cache strategy to support cultivar names
- Not yet fully resolved but set to resolved to not forget
- 10:18 PM feature request #9757 (Closed): Make cultivars, cultivar groups and grexes parsable
- This should be fixed. Only correct usage of rank grex needs discussion but is handled in generell cultivar ticket #9755
- 01:56 PM feature request #9757 (Resolved): Make cultivars, cultivar groups and grexes parsable
- Not yet fully resolved but set to resolved to not forget
- 03:25 PM bug #825 (Closed): DefinedTermDaoImpl - missleading method names
- fully solved
- 03:18 PM bug #7904: DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
- ahh this was solved for Release 5.25
- 03:18 PM bug #7904 (Closed): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
- code looks good. I also tested with yourkit, ticket can be closed.
- 02:49 PM task #8392: Types in PhycoBank
- Hi Hennig It ink this is all solved now and we can close this ticket as "worksforme"
- 02:32 PM bug #9777 (New): TypeError: Argument 1 passed to cdm_tagged_text_add_options() in registration-search
- http://edit.test/d7/phycobank/cdm_dataportal/registration-search/filter?identifier=&taxon_name=Mi&reference_citation=...
- 02:16 PM feature request #9758 (Closed): EmailService implemented
- implemented, covered by integration tests and not causing problem in existing apps -> can be closed
- 02:05 PM task #8379 (Closed): Review strange specimen implementations
- 02:05 PM task #8379: Review strange specimen implementations
- final check successful, can be closed, moving to the milestone for which this has been fixed: Release 5.18
- 01:58 PM task #7099 (Closed): Make CdmAuthority a persistable class
- two more lines of doc and closing this ticket
- 01:07 PM task #7099 (Resolved): Make CdmAuthority a persistable class
- I added some javadoc. Please extend if you remember more details.
I implemented a first toString() method. Can be ... - 11:34 AM task #7099 (Feedback): Make CdmAuthority a persistable class
- the implementation looks good, I only got three opens points:
* Documentation is missing, I think only linking to ... - 01:56 PM feature request #9755 (Resolved): Open issues for cultivar handling
- Not yet fully resolved but set to resolved to not forget
- 01:35 PM bug #9740 (Worksforme): Adapt Motive(Motif) to Subject in data portal
- Ahh, sorry, this was a mistake from my side. It does not exist in the dataportals.
- 10:44 AM bug #9740 (Feedback): Adapt Motive(Motif) to Subject in data portal
- There is no such term in the dataportal code.
Please can you give an example for a dataportal page where this label ... - 11:41 AM bug #8429 (Closed): Rename DeterminationEvent_Reference.setOfReferences_id
- there are no indications of this problem in the log, so the issue is fixed for sure.
- 10:08 AM bug #8936 (Closed): Improve default distribution formatting
- As far as I remember the level-0 item glue ", " was needed in some cases where only one hierarchy level of area has ...
- 09:32 AM feature request #3630: Taxeditor should add mimetype of mediaRepresentations automatically
- As this is already partly implemented we probably only need to adapt the existing algorithm.
@Andreas K., as you h... - 09:25 AM task #2452 (Duplicate): Media entities and Webpages
- I think this is kind of a duplicate discussion of #9067. We decided there to keep the current data model and store me...
09/20/2021
- 11:22 PM bug #9732 (In Progress): Open issues in specimen tree editor
- 11:18 PM bug #9762 (Feedback): Handle cultivars correctly in TaxEditor
- Cultivar group should always appear while cultivar name should disappear if group (or grex) is selected. Currently it...
- 11:17 PM bug #9762: Handle cultivars correctly in TaxEditor
- Cultivar Group should appear **above** Cultivar Name
- 11:15 PM bug #9762: Handle cultivars correctly in TaxEditor
- Due to the above error (and maybe some similar errors) it is difficult to test.
Before passing back please do test... - 11:09 PM bug #9762: Handle cultivars correctly in TaxEditor
- I got NPE when changing to ICNCP:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/rem... - 11:04 PM bug #8936 (Feedback): Improve default distribution formatting
- The new implementation looks very good and I guess the ticket can be closed.
The only thing I realized and was won... - 10:19 PM bug #9734: Correct handling for secundum references when moving taxon to new parent
- Can you please test all possible combinations on nightly and put the result of the test into this ticket?
- 10:18 PM bug #9734 (Feedback): Correct handling for secundum references when moving taxon to new parent
- This did not work for me. I did select "Keep if all related secs are the same, warn otherwise". I moved a taxon with ...
- 10:03 PM bug #9772 (Feedback): Improve DTO usage for character matrix
- There seems to be another issue: when I change only 1 record 8 new records are added in the DB but only 1 should be a...
- 09:49 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> The error changed a bit but I still get an NPE regarding the StatMeasureValues.type:
I ch... - 09:45 PM bug #9772: Improve DTO usage for character matrix
- The error changed a bit but I still get an NPE regarding the StatMeasureValues.type:
~~~
last remote method : htt... - 09:41 PM bug #9772: Improve DTO usage for character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > Changes in data do currently not get persisted
>
> Did you resta... - 03:54 PM bug #9772: Improve DTO usage for character matrix
- now the matrix is visible also in DDS perspective again. For whatever reason the problem seems to be solved.
- 03:04 PM bug #9772 (Resolved): Improve DTO usage for character matrix
- I put this to resolved as it is for review.
- 02:54 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Changes in data do currently not get persisted
Did you restart the server? - 02:43 PM bug #9772: Improve DTO usage for character matrix
- Andreas Müller wrote:
> Katja Luther wrote:
> > I also checked the actual nightly build and your test DB and all va... - 02:25 PM bug #9772: Improve DTO usage for character matrix
- Changes in data do currently not get persisted
- 02:08 PM bug #9772: Improve DTO usage for character matrix
- I got when saving
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/common.ser... - 02:04 PM bug #9772: Improve DTO usage for character matrix
- Katja Luther wrote:
> I also checked the actual nightly build and your test DB and all values are shown.
>
> Now ... - 01:45 PM bug #9772 (In Progress): Improve DTO usage for character matrix
- Now DescriptiveDatasetDto is used and the rowWrapper uses DescriptionDtos as well.
- 01:43 PM bug #9772 (Closed): Improve DTO usage for character matrix
- The character matrix still uses cdm objects for descriptive dataset and descriptions, we need to switch to DTOs as we...
- 04:45 PM bug #9776: Enforce cdm webservice access via https when pages are requested via this schema
- The solution to this problem is to use https also for the "CDM web service URL".
This should be enforced automatical... - 04:38 PM bug #9776 (Closed): Enforce cdm webservice access via https when pages are requested via this schema
- Original subject "kml layer request for https page causes mixed content problem"
e.g. https://cichorieae.e-taxonom... - 03:49 PM bug #9746 (Closed): Remove excluded and unplaced flags from right click menu
- Seems to be fully fixed now.
- 03:42 PM feature request #8028 (Closed): Better representation of web app media in the image gallery
- I moved the open issues handling to new ticket #9775
- 03:25 PM feature request #8028: Better representation of web app media in the image gallery
- please create a new ticket with the results of your experiments. Your findings need more time to discuss them properl...
- 03:41 PM bug #9775 (New): Open issues for web app media in the image gallery
- see #8028#note-18 ff for the open issues
- 03:18 PM bug #9739: Add common name languages preference to DB preferences
- Generally the functionality seems to work now and ticket can be closed.
- 03:17 PM bug #9739 (Feedback): Add common name languages preference to DB preferences
- When trying to override via local settings I get:
~~~
org.eclipse.core.runtime.AssertionFailedException: null arg... - 09:19 AM bug #9739 (Resolved): Add common name languages preference to DB preferences
- Andreas Müller wrote:
> Is this fixed already?
yes - 02:20 PM feature request #9774 (New): aggregate statistics on site visits (Piwik)
- aggregate statistics one site visits are an important measure which has already been requested in #2379
matomo how... - 02:14 PM task #9773 (New): Improve matomo performance
- The matomo instance at https://cybertaxonomy.eu/piwik is extremely slow showing the overview dashboard for E+M fir ex...
- 02:00 PM bug #9710 (Closed): DataIntegrityViolationException after adding a specimen to the matrix
- further discussions on DTO handling were moved to #9772.
This ticket can be closed as it originally handles only t... - 10:06 AM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
- Andreas Müller wrote:
> I get the strange behavior that the matrix only shows the most left factual data column corr... - 10:51 AM task #2149 (Worksforme): implement test cases
- tests are already implemented
- 10:11 AM bug #4849: zen_basetheme custom icon size intially not recognized
- still relevant and unsolved
09/19/2021
- 10:01 PM bug #9739: Add common name languages preference to DB preferences
- Is this fixed already?
09/17/2021
- 11:56 PM feature request #9771 (Closed): Implement Cdm2Cdm for vocabularies
- Needed for loading terms from term server and for moving the character ontology.
- 11:52 PM bug #9346 (Closed): Adding specimen to character matrix fails sometimes
- I tried to add the test specimen again and it worked. So I guess the ticket is correctly fixed.
- 11:24 PM bug #9766: CDM vocabularies should not be editable
- AM:
Wir könnten auch je Klasse ein cdmVocabularyUuids() einführen, die dann alle bekannten CDM VOC uuids zurückgib... - 10:43 AM bug #9766 (Closed): CDM vocabularies should not be editable
- this is already implemented for languages in #9747. We should implement it for all CDM vocabularies.
- 11:16 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
- I worked with 5.27.0.202109161022 beta as there is no newer version for nightly (build does not work). Also the curre...
- 11:13 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
- Also I get (during save I think, but not sure)
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/re... - 10:34 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
- I get the strange behavior that the matrix only shows the most left factual data column correctly. All other columns ...
- 10:29 PM bug #9710 (Feedback): DataIntegrityViolationException after adding a specimen to the matrix
- Playing around I got
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxonn... - 10:16 PM bug #9710: DataIntegrityViolationException after adding a specimen to the matrix
- Loading seems to be much faster now. Very good!
- 09:56 PM bug #9710 (Resolved): DataIntegrityViolationException after adding a specimen to the matrix
- I put this to resolved as it is easier to find during review this way. We may split the ticket after release if not f...
- 09:08 PM feature request #8325 (In Progress): Create CDM Instance with all CDM core terms
- Created database instance
- 06:30 PM feature request #424: Implement advanced search
- I marked those issues that seem to be fixed. Should we open new subtickets for the remaining issues?
- 05:46 PM feature request #4118 (Feedback): @NotPartOf Annotation to exclude properties from the permission validation
- Is this still an open issue?
I remember we had another solution for e.g. cache fields. We should link this solutio... - 05:35 PM bug #4849: zen_basetheme custom icon size intially not recognized
- This is not a cdmlib ticket.
Is it still an open issue? - 05:14 PM task #2149 (Feedback): implement test cases
- is this still an open issue?
- 04:58 PM feature request #6963 (In Progress): Implement cache strategy for cultivar plant names (done), bacterial names, fungi, etc.
- Cultivar names are mostly implemented, therefore set to "InProgress"
- 04:52 PM feature request #8028: Better representation of web app media in the image gallery
- Should we create new ticket(s) for the open issues or should we move this ticket to an upcoming milestone.
As it i... - 04:49 PM bug #9730 (Closed): Open URL Button is disabled for persisted data
- I tested and it works as expected.
- 03:37 PM feature request #3990 (Closed): [DISCUSS] How to implement citation suggestion to each taxon
- I think we can close this ticket as the source information is implemented as described via sec reference (former last...
- 03:34 PM task #7369 (Closed): Handle taxonomically valueless taxa correctly
- An example for a "valueless" taxon in CDM is https://www.europlusmed.org/cdm_dataportal/taxon/6a572ecd-f989-44a2-96ce...
- 03:29 PM task #7346 (Closed): [CHECK] Use separate area vocabulary for common names
- 03:21 PM bug #7823 (Closed): User Persons are not deduplicated
- This is fixed. No duplicate or unnecessary users were imported from BM. Though there are a couple of users representi...
- 02:58 PM feature request #7801 (Closed): AM: Deduplicate references
- The import did run long time ago. Deduplication was done as far as it was done. As we can't change much here other th...
- 01:27 PM feature request #9770: Discuss symbols for (inverse) misapplications and pro parte synonyms
- Andreas Müller wrote:
> Is there an example dataportal page for inverse pro parte synonyms or even partial synonyms?... - 12:47 PM feature request #9770: Discuss symbols for (inverse) misapplications and pro parte synonyms
- Is there an example dataportal page for inverse pro parte synonyms or even partial synonyms?
- 12:46 PM feature request #9770 (New): Discuss symbols for (inverse) misapplications and pro parte synonyms
- for discussions and examples see #7514
Current symbols for inverse MAN and pro parte synonyms are not very convinc... - 12:50 PM bug #7514 (Closed): Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- The main task of this ticket has been fixed (invert symbols for MAN relationships).
The task to find better symbol... - 12:48 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- Andreas Kohlbecker wrote:
> the test page http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/t... - 12:29 PM feature request #8004 (Closed): Add sortindex to description element
- This has been implemented. Follow-up tickets for TaxEditor and dataportal have been created.
So I close this ticket. - 12:27 PM feature request #9769 (In Progress): Implement sortindex field for description elements in dataportal
- for more details see #8004
- 12:24 PM feature request #9768 (New): Implement sortindex field for description elements in TaxEditor
- For now it could look like this:
There is a label showing the current sortindex
e.g. "Order: 1"
with buttons... - 12:11 PM feature request #7372 (Closed): Allow configuring feature/term tree
- This flag is in use already and no problems occurred so far. So I think we can close this ticket.
- 12:08 PM feature request #8006 (Closed): Improve labels for taxon relationships
- Looks correct in production databases
~~~sql
SELECT r.text, r.abbreviatedLabel, r.label, r.plural, r.language_id,... - 12:02 PM feature request #9767 (Duplicate): Improve labels for concept relationships
- Upps, this duplicates #8007
- 12:01 PM feature request #9767 (Duplicate): Improve labels for concept relationships
- In #8006 labels for taxon relationships like misapplied names or pro parte synonym relationships where updated correc...
- 11:51 AM bug #9762 (Resolved): Handle cultivars correctly in TaxEditor
- Now if ICNCP is selected only the cultivar ranks are available and the fields are displayed depending on the selected...
- 11:22 AM bug #8113 (Closed): Update TypeDesignationStatus labels
- Not sure what this is really about except for the case issues handled in #9263.
Possible issues could be:
* Som... - 10:59 AM feature request #7640: Update ISO country names where necessary
- Andreas Müller wrote:
> @Henning: can you review after next release if everything works as expected for you?
... ... - 10:56 AM feature request #7640: Update ISO country names where necessary
- This should be fixed. Country names are up-to-date and labels are split into (common and short) labels and official l...
- 10:48 AM bug #825: DefinedTermDaoImpl - missleading method names
- This is fixed. Please review.
As the old method findByTitle which did override the same labeled parent method seem... - 10:24 AM bug #825 (Resolved): DefinedTermDaoImpl - missleading method names
- Applied in changeset commit:cdmlib|0dd6415a7665115b465b687879a987b7d70af7ed.
- 10:45 AM feature request #9747 (Closed): Make languages editable in TaxEditor
- This works as expected.
For the disabling of other CDM vocabularies I added a new ticket. If disabling was easy to... - 10:35 AM bug #9759 (Closed): Person deduplication does not work due to new collectorTitleCache field
- I tested in TaxEditor and it seems to work.
- 09:36 AM bug #9237 (Closed): FeatureTree SortIndex updater creates wrong sortindex
- I tested again and could not see any errors. So I close the ticket and move back to fixing milestone.
Reopen if is... - 08:27 AM feature request #9761 (Closed): Add cultivarGroup as field for handling cultivar groups and grex
- 08:26 AM task #9752 (Closed): Import for Flora of Mexico
09/16/2021
- 03:44 PM feature request #9758 (Resolved): EmailService implemented
- Applied in changeset commit:cdmlib|bcf94376128f49035cca1927d59e04c0016bdc7c.
- 03:38 PM feature request #9758: EmailService implemented
- the mail configuration section in a aspplication.properties file for the currently implemented `SendEmailConfigurer`
... - 12:00 PM bug #9765 (Closed): external-links weight range too small and link fiels maxlength to small
- 11:44 AM bug #9765 (Closed): external-links weight range too small and link fiels maxlength to small
- 09:50 AM feature request #7640 (Resolved): Update ISO country names where necessary
09/15/2021
- 11:04 PM feature request #4209 (In Progress): Better handling of labels, abbreviations and descriptions in ISO 3166-1 (country) terms
- 04:50 PM bug #9764 (Closed): external-links form misses category field
- 04:12 PM bug #9764 (Closed): external-links form misses category field
- add a field for category with auto suggest combobox
- 04:10 PM bug #9763 (Closed): adding new external link broken
- 04:09 PM bug #9763 (Resolved): adding new external link broken
- Applied in changeset commit:cdm-dataportal|3700d60368ddb0b49899cbfbdb59e6a7b5999306.
- 03:58 PM bug #9763 (Closed): adding new external link broken
- adding a new external link fails with a WSOD
- 03:48 PM feature request #9761 (In Progress): Add cultivarGroup as field for handling cultivar groups and grex
- 01:55 PM feature request #9761 (Closed): Add cultivarGroup as field for handling cultivar groups and grex
- This is needed as in cultivar names the cultivar epithet can exist together with cultivar group epithet and/or grex e...
- 03:45 PM bug #9762 (Closed): Handle cultivars correctly in TaxEditor
- copied from #9755
* If ICNCP is selected make only cultivar ranks (#6387) available
* If a cultivar rank is selec... - 01:43 PM bug #9760 (Closed): image gallery shows webapp icons instead of thumbnails
- 01:42 PM bug #9760 (Resolved): image gallery shows webapp icons instead of thumbnails
- Applied in changeset commit:cdm-dataportal|c2162a7475c7dac6d90a663403cc23a6be054a75.
- 01:41 PM bug #9760 (Closed): image gallery shows webapp icons instead of thumbnails
- see :
![](picture950-1.png) - 10:56 AM bug #9759 (Resolved): Person deduplication does not work due to new collectorTitleCache field
- Applied in changeset commit:cdmlib|7cb329fc60af691dd901f0cfb66bad9307cbc0ae.
- 10:36 AM bug #9759 (Closed): Person deduplication does not work due to new collectorTitleCache field
- ... also check if this is the case for nomenclaturalTitleCache
- 10:36 AM feature request #9747: Make languages editable in TaxEditor
- The doubled separators are removed. Please review.
- 10:35 AM feature request #9747: Make languages editable in TaxEditor
- Andreas Müller wrote:
> The menu for vocabularies and term trees should use the same order. Please move the "languag... - 10:35 AM feature request #9747: Make languages editable in TaxEditor
- Andreas Müller wrote:
> Functionallity works and ticket can be closed.
>
> However, the Language class has 1 more... - 10:34 AM feature request #9747 (Resolved): Make languages editable in TaxEditor
- Applied in changeset commit:taxeditor|5cabd426f71e5cc0254e32e414ff7afc26b92ed5.
- 09:52 AM feature request #9747: Make languages editable in TaxEditor
- Andreas Müller wrote:
> According to commit 53e555624aa688 there is lots of commented code now in OpenDefinedTermEdi...
09/14/2021
- 09:52 PM bug #8936: Improve default distribution formatting
- Do you have some example links on test server?
- 09:51 PM feature request #9747: Make languages editable in TaxEditor
- According to commit 53e555624aa688 there is lots of commented code now in OpenDefinedTermEditorHandlerE4.java . Can t...
- 09:49 PM feature request #9747: Make languages editable in TaxEditor
- Functionallity works and ticket can be closed.
However, the Language class has 1 more attribute iso639_1 which ref... - 09:44 PM feature request #9747: Make languages editable in TaxEditor
- Minor issue:
There is a separator below "New" but no other group or item:
![](picture451-1.png)
Can we remov... - 09:34 PM feature request #9747 (Feedback): Make languages editable in TaxEditor
- The menu for vocabularies and term trees should use the same order. Please move the "language" menu item to the same ...
- 10:43 AM feature request #9747: Make languages editable in TaxEditor
- Now the implementation uses the cdmVocabularyUuid method.
- 09:32 PM feature request #7646 (Closed): Implement parser and formatter for "hort."
- I tested in editor and it also works there. So I close the ticket.
- 09:18 PM task #9744: Find suitable name for the Freetext- or Name-Editor
- HOORAY !!!!!
- 09:12 PM task #9744 (Closed): Find suitable name for the Freetext- or Name-Editor
- We decided to use "Taxon Editor" for the formerly labeled "Name Editor" and not to change "bulk editor" labels for no...
- 09:10 PM task #9744 (Resolved): Find suitable name for the Freetext- or Name-Editor
- WGB:
einverstanden, das ist eine gute Lösung, ich wäre nicht für „Freetext“.
Eine Frage wäre noch, ob wir bei „B... - 04:37 PM feature request #9757 (In Progress): Make cultivars, cultivar groups and grexes parsable
- 09:47 AM feature request #9757 (Closed): Make cultivars, cultivar groups and grexes parsable
- See http://www.actahort.org/chronica/pdf/sh_10.pdf
Allowed characters: Art. 21.18 - 04:14 PM feature request #6387: [Rule] Rank rule for CultivarPlantNames
- On convar see https://github.com/tdwg/tnc/blob/master/tcs-deconstructed/TaxonomicRank.md#taxonomicrankcultivatedplant...
- 03:17 PM feature request #9758 (In Progress): EmailService implemented
- 03:17 PM feature request #9758: EmailService implemented
- We can use the `org.springframework.mail.javamail.JavaMailSenderImpl` instead of implementing our own service
- 03:10 PM feature request #9758 (Closed): EmailService implemented
- A service to send emails
Configuration of the following properties should be possible via a Spring-PropertySource:... - 02:56 PM feature request #9755 (In Progress): Open issues for cultivar handling
- Existing cases:
~~~
SELECT *
FROM TaxonName tn INNER JOIN DefinedTermBase r ON r.id = tn.rank_id
WHERE r.uuid =... - 11:05 AM bug #9452 (Closed): Name Type Editor: allowed combination of fields
- 10:54 AM bug #9452: Name Type Editor: allowed combination of fields
- Works as expected, the bug is fixed, fine. Ticket can be closed.
- 11:04 AM feature request #9706 (Closed): Name Editor for Sections: show simple form for in-authors without full citation
- 10:59 AM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
- Works as expected. Ticket can be closed.
09/13/2021
- 02:07 PM bug #8936 (Resolved): Improve default distribution formatting
- please review
- 02:07 PM bug #8936: Improve default distribution formatting
- The following portals need to be checked after the release:
~~http://portal.cybertaxonomy.org/diptera/~~ ':
~~htt... - 01:41 PM bug #8936: Improve default distribution formatting
- New parameter `item_suffix` with default value "`: `"
- 01:36 PM bug #8936 (In Progress): Improve default distribution formatting
- need to solve #9756 in the context of this ticket since the issues are more closely related than initially assumed
- 08:45 AM bug #8936 (Closed): Improve default distribution formatting
- 08:44 AM bug #8936 (Resolved): Improve default distribution formatting
- Applied in changeset commit:cdm-dataportal|abf4371572af20f9f408c45fc893b75695fb169e.
- 01:43 PM bug #9756 (Duplicate): Footnote key placement in hierarchical distributions improved
- closing as duplicate of #8936
- 08:35 AM bug #9756 (Duplicate): Footnote key placement in hierarchical distributions improved
- See:
![](picture317-1.png)
the footnote key should come before the colon
Example: https://132.248.13.83/cd... - 01:20 PM feature request #9747: Make languages editable in TaxEditor
- To add the language editor can be done in 5 minutes, but to allow the editing for non cdm languages and do not allow ...
- 01:17 PM feature request #9747 (Resolved): Make languages editable in TaxEditor
- Applied in changeset commit:taxeditor|53e555624aa688350d4c89e43e8a3f172e534022.
09/11/2021
- 03:52 PM feature request #9754 (In Progress): Adapt cache strategy to support cultivar names
- 09:41 AM feature request #9754: Adapt cache strategy to support cultivar names
- Further problems for cultivar groups are:
* The "Group" epithet may need translation (Art. 15.1) - alternatively t... - 09:00 AM feature request #9754: Adapt cache strategy to support cultivar names
- There is a problem that cultivar names to not have a "parent rank" and therefore it needs to be computed which epithe...
- 08:55 AM feature request #9754 (Closed): Adapt cache strategy to support cultivar names
- copied form #6963
We need a cache strategy for Cultivar Status (Art. 14), Group Status (Art. 15) and Grex Status (... - 03:08 PM feature request #9755 (In Progress): Open issues for cultivar handling
- ~~Cultivar names, groups and grex are currently not parsable~~ (#9757)
~~Cultivar names, groups and grex need to b... - 03:06 PM feature request #5981: Add abbreviation to Rank "Cultivar"
- Note: according to the code 'cv.' should not be used for cultivar names (anymore?)
09/09/2021
- 06:02 PM bug #9701 (Closed): Order and display of different typifications for one name in one reference
- 04:52 PM bug #9701: Order and display of different typifications for one name in one reference
- Working not exactly as expected, but a little bit better :)
The colours are nice, the plural thing is also solved.
... - 02:25 PM bug #9452: Name Type Editor: allowed combination of fields
- please review
- 02:25 PM bug #9452 (Resolved): Name Type Editor: allowed combination of fields
- Applied in changeset commit:cdm-vaadin|684d6197df0466dceb8ba592d5e4562593060a8a.
- 02:18 PM bug #9753 (New): New adapted wizard(s) for exports/imports using the generic wizard
- Some exports and imports still use the generic wizard for exports/imports using the boolean attributes of the configu...
- 01:20 PM feature request #7646 (Resolved): Implement parser and formatter for "hort."
- The parser has been implemented for the flora mexico import (#9752). A formatter is not necessary as we do not use a ...
- 01:17 PM feature request #6677 (Rejected): Add "hort." flag to Botanical names
- For the above reasons adding the flag is rejected.
- 01:11 PM task #9752 (Closed): Import for Flora of Mexico
- 12:37 PM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
- please review
- 12:37 PM feature request #9706 (Resolved): Name Editor for Sections: show simple form for in-authors without full citation
- Applied in changeset commit:cdmlib|051b6f6e98d82d69bd8ffefdd0c0df7d1e5958ad.
- 12:13 PM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
- Andreas Kohlbecker wrote:
> this behavior should be activated when TaxonNamePopupEditorMode.NOMENCLATURALREFERENCE_S... - 12:34 PM task #9744: Find suitable name for the Freetext- or Name-Editor
- Die Verwechslungsgefahr zwischen "Name Editor" und "Name Bulk Editor" kommt vermutlich auch daher, dass bei den Bulke...
- 10:51 AM task #9744: Find suitable name for the Freetext- or Name-Editor
- WGB:
“Name Editor” ist tatsächlich historisch, und muss immer so erklärt werden. Einen technischen Namen („Freetex... - 11:12 AM bug #9751: [CdmLight] Exported identifier types should be configurable
- AM:
... wobei ich mir nicht ganz sicher bin, wie dringend wir die brauchen. Wenn die Identifier in eigener Tabelle... - 10:55 AM bug #9751 (New): [CdmLight] Exported identifier types should be configurable
- If all identifiers can be exported (see #9750), it should be configurable which types are exported.
- 10:53 AM bug #9750 (New): [CdmLight] Export all name identifier
- Actually only IPNI, Tropicos and WFO identifiers are exported, but the export should handle all kind of identifiers.
- 10:38 AM bug #9749 (Closed): NPE when opening SpecimenImportView
- Works as expected now.
- 09:30 AM bug #9749 (Resolved): NPE when opening SpecimenImportView
- Applied in changeset commit:taxeditor|51dfe6f454155927ac4d50c50474d8d13c3e2bd4.
- 09:07 AM bug #9749 (Closed): NPE when opening SpecimenImportView
- When opening the biocase or gbif import view:
~~~ text
last remote method : http://160.45.63.230:80/cdmserver/car... - 10:24 AM bug #9746: Remove excluded and unplaced flags from right click menu
- Related to this ticket: if the doubtful flag is set in the taxon node dialogue the navigator seems not to be refreshe...
- 10:16 AM bug #9746 (Feedback): Remove excluded and unplaced flags from right click menu
- The menu still shows the menu entries but disabled:
![](picture920-1.png)
09/08/2021
- 10:16 PM bug #9701 (Resolved): Order and display of different typifications for one name in one reference
- please review
- 03:26 PM bug #9701: Order and display of different typifications for one name in one reference
- Other display issues, related to #9308, can be seen here:
![](picture866-1.png) - 03:08 PM feature request #9748 (New): Refactor identifiers
- Currently we have the Identifier class (Identifier string + type) and specific classes for DOI, ORCID, LSID etc used ...
- 02:17 PM task #8438 (Closed): remove featureTree/* web services in August 2021 if they are unused
- all featureTree/* web services removed
- 02:17 PM task #8438 (Resolved): remove featureTree/* web services in August 2021 if they are unused
- Applied in changeset commit:cdmlib|567659e868b4bc34d54aa11c03f3db9ee78c4334.
- 02:10 PM task #8438: remove featureTree/* web services in August 2021 if they are unused
- `/featureTree` is no longer being used, checked with `zgrep "/featureTree" cdm-server.2021*`
09/07/2021
- 03:26 PM feature request #9747 (Closed): Make languages editable in TaxEditor
- Currently languages are not yet editable in TaxEditor.
For the CDM this is correct. But other languages should be ...
09/06/2021
- 03:56 PM task #9744: Find suitable name for the Freetext- or Name-Editor
- AM:
Freitext-Editor finde ich persönlich nicht schlecht, höchstens, außer das in Zukunft auch mal andere Freitext ... - 03:43 PM task #9744: Find suitable name for the Freetext- or Name-Editor
- >Name-Editor is being used in the documentation for historic reasons.
Historically Cherian was using this term int... - 03:22 PM task #9744: Find suitable name for the Freetext- or Name-Editor
- Ein älterer Thread zum Thema:
WGB:
ok, verstanden. Ich finde finde den Begriff Taxon Node für die konkrete Stel... - 10:46 AM task #9744: Find suitable name for the Freetext- or Name-Editor
> Also Freitext Editor?
>
> @Katja Hast du die Email-Diskussion zu diesem Thema mit Walter denn gefunden und zu ...- 03:45 PM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- can be reviewed from 7.9.21 on
- 03:44 PM task #9308 (Resolved): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- Applied in changeset commit:cdm-vaadin|574886857ce6fde57a478eb2ae3477eaa72ebd11.
- 03:04 PM feature request #8979: Prevent misuse of field initial for personal names
- ready for review on 7.9.21
- 03:02 PM feature request #8979 (Resolved): Prevent misuse of field initial for personal names
- Applied in changeset commit:cdm-vaadin|e1e73a5eae7239539b205b44b365b52c591ba21d.
- 12:36 PM bug #9745 (Closed): pre-configured map layers using https
- all map layers are switched to https
- 10:33 AM bug #9746: Remove excluded and unplaced flags from right click menu
- Please review. I also fixed the refresh problem, so now the menu should show set/remove menu item correctly immediate...
- 10:31 AM bug #9746 (Resolved): Remove excluded and unplaced flags from right click menu
- Applied in changeset commit:taxeditor|dc7a943c33e9a733dbf51ba7e86eaf91d7ff2ec2.
- 08:30 AM bug #9746 (Closed): Remove excluded and unplaced flags from right click menu
- The flags unplaced and excluded need more informations therefore it is does not make sense to have it in the right cl...
09/03/2021
- 05:49 PM bug #9745: pre-configured map layers using https
- the correct URL for http://cybertaxonomy.org:8082/mapproxy/service is http://geo.cybertaxonomy.org/mapproxy/service a...
- 05:01 PM bug #9745: pre-configured map layers using https
- http://cybertaxonomy.org:8082/mapproxy/service
does not yet support https !!! - 04:55 PM bug #9745 (Closed): pre-configured map layers using https
- the maps layers provided in are still using http, this results in mixed in http content in the browser like http://b....
- 01:53 PM task #9744 (Closed): Find suitable name for the Freetext- or Name-Editor
- So far, we don't have a commonly accepted name for the "Freetext- or Name- or Wathever-Editor" which is consistently...
- 11:03 AM bug #9742: embedded h2 database in server mode for connection pooling
- This is probably more a cdmlib issue then a taxeditor issue
- 10:18 AM bug #9742 (New): embedded h2 database in server mode for connection pooling
ich versuche gerade, eine H2 Datenbank auf meinem Laptop zu installieren, in der Hoffnung, dass ich offline an der ...- 10:43 AM bug #9463: UniversalViewer causes jQuery version conflict and breaks maps
- using the UV webpack should solve the problem
- 10:42 AM bug #9743: Universal Viewer - metadata component gets lost on leaving fullscreen mode
- * a bug in our UV version?
* would using UV as webpack help? see also #9463 - 10:38 AM bug #9743 (New): Universal Viewer - metadata component gets lost on leaving fullscreen mode
- Norbert: "Wenn ich im Cichorieae-Portal vom Vollbild-View des Viewers auf die verkleinerte Fensteransicht zurückschal...
09/02/2021
- 03:42 PM bug #9729 (Closed): Incomplete bean property Team.nomenclaturalTitleCache
- 12:59 PM bug #9729: Incomplete bean property Team.nomenclaturalTitleCache
- seems to be working in cdm-vaadin with the latest adaptions. I could not find any problems.
- 12:53 AM feature request #8028: Better representation of web app media in the image gallery
- Is there a follow-up or a already-handled-in ticket for the missing metadata issue?
- 12:49 AM feature request #8028 (Feedback): Better representation of web app media in the image gallery
- I tried this with taxon media (the original usecase from the description of this ticket).
On caryo_spp /test serve...
09/01/2021
- 11:45 PM bug #9741: cdm_dataportal_shortname_of truncates uninomial with not abbreviated author strings and causes other odds
- Also #6203 might be relevant for this issue.
- 02:40 PM bug #9741 (New): cdm_dataportal_shortname_of truncates uninomial with not abbreviated author strings and causes other odds
- for example in https://132.248.13.83/cdm_dataportal/taxon/ed358b48-4e90-40d6-ba5f-10b81f18b72b
Asparagales Link is t... - 01:57 PM feature request #7749 (Rejected): Add "Link with taxon selection" as an icon to the toolbar of the specimen tree editor
- This will not be implemented for the reasons mentioned in #9732 (last issue). Instead we do have taxon navigator "ope...
- 01:55 PM bug #9723 (Duplicate): Specimen tree editor: Function of "Link with taxon selection" in context menu unclear
- This duplicates the last issue in #9732 and is fixed in the meanwhile (menu entry was removed).
- 01:41 PM bug #9732: Open issues in specimen tree editor
- Katja Luther wrote:
> • Die Funktionsweise von „Link with taxon selection“ ist mir nicht klar. Bezieht sich das auf ... - 01:36 PM bug #9732: Open issues in specimen tree editor
- NoK:
* Filter "All unit types" statt "Unknown unit type" wäre in der Tat logischer
* "Im search gibt’s den Type... - 01:33 PM bug #9740 (Worksforme): Adapt Motive(Motif) to Subject in data portal
- for details see #9732#note-3
- 01:18 PM bug #9728: NoSuchMethodException Team.areNomenclaturalTitle() breaks authortem editors
- I made some adaptations to the changes. See also #9729#note-4
- 01:16 PM bug #9729: Incomplete bean property Team.nomenclaturalTitleCache
- Please check if this fullfills the requirements in vaadin.
- 01:15 PM bug #9729 (Resolved): Incomplete bean property Team.nomenclaturalTitleCache
- I adapted the changes so that it is similar to IdentifiableEntity.titleCache implementation.
This means:
* the ... - 09:56 AM bug #9739: Add common name languages preference to DB preferences
- This exception comes from the multilanguage prefernce, but needs to be fixed as well.
08/31/2021
- 11:08 PM bug #9739 (Feedback): Add common name languages preference to DB preferences
- Now it exists, but when saving I got:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am... - 09:09 AM bug #9739 (Resolved): Add common name languages preference to DB preferences
- 09:05 AM bug #9739: Add common name languages preference to DB preferences
- Maybe the editor was not build?
I checked the nightly build and the common name languages where available for DB p... - 05:20 PM bug #9732: Open issues in specimen tree editor
- > Als Derived Unit – Media specimen – Kind of media gibt’s nur “Specimen scan”. Ich fände auch hier “Still image” gut...
- 05:18 PM bug #9732: Open issues in specimen tree editor
- > Der Titel des Bildes im Tree ist das Specimen-Aufsammlungs-Zitat, das ist etwas unglücklich (und repetitiv), finde ...
- 05:08 PM bug #9732: Open issues in specimen tree editor
- AM:
nur zu motive <-> motif. Bist du da sicher. Laut https://dict.leo.org/englisch-deutsch/motive ist motive eher ... - 09:15 AM bug #9735 (Closed): [CdmLight] Add type specimen to specimen table
- 09:13 AM bug #9645 (Closed): CDM Light: Add Type Statement Reference to homotypicalGroup.csv
- 09:08 AM bug #9737 (Closed): [CdmLight] Add two dummy lines for empty tables
- 09:07 AM bug #9736 (Closed): [CdmLight] Add new table for type designation to specimen relationship
- This ticket can be closed.
08/30/2021
- 09:07 PM bug #9263 (Closed): Unify case for type designation status
- Andreas Kohlbecker wrote:
> Mir ist nicht klar was ich hier machen soll. Die im Kommentar 3 erwähnten FIXMEs sind al... - 08:23 PM bug #9704 (Closed): Several issues when trying to move taxon with dialogue
- Both issues seem to be fixed.
- 07:41 PM bug #9736 (In Progress): [CdmLight] Add new table for type designation to specimen relationship
- As there are already commits on this ticket it seems to be at least "In Progress".
If resolved already please adapt ... - 07:34 PM bug #9739 (Feedback): Add common name languages preference to DB preferences
- The current db preferences menu only shows "multi-language support" but not "languages for common names".
Something ...
08/27/2021
- 11:26 AM bug #9738 (Closed): NomenclaturalSourceFormatter throws OutOfMemory with only protected titleCache
- 09:53 AM bug #9739 (Resolved): Add common name languages preference to DB preferences
- this should be done, please review.
- 09:52 AM bug #9739 (Closed): Add common name languages preference to DB preferences
- The common name languages should be available as db preferences.
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