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From 08/18/2021 to 09/16/2021

09/16/2021

05:10 PM Revision 3ac9e408 (cdmlib): ref #9758 option to define custom configurations in test and production systems#
Andreas Kohlbecker
04:40 PM Revision 82da5e6c (cdmlib): ref #9758 configuration for sending emails with smtp properties
Andreas Kohlbecker
03:44 PM feature request #9758 (Resolved): EmailService implemented
Applied in changeset commit:cdmlib|bcf94376128f49035cca1927d59e04c0016bdc7c. Andreas Kohlbecker
03:38 PM feature request #9758: EmailService implemented
the mail configuration section in a aspplication.properties file for the currently implemented `SendEmailConfigurer`
...
Andreas Kohlbecker
03:44 PM Revision bcf94376 (cdmlib): fix #9758 configuration for sending emails with JavaMailSenderImpl
Andreas Kohlbecker
03:44 PM Revision 1574f983 (cdmlib): note on manual anttask execution
Andreas Kohlbecker
12:02 PM Revision 26557b05 (cdmlib): update cached cdm mapping to 5.27.0
Andreas Müller
12:00 PM bug #9765 (Closed): external-links weight range too small and link fiels maxlength to small
Andreas Kohlbecker
11:44 AM bug #9765 (Closed): external-links weight range too small and link fiels maxlength to small
Andreas Kohlbecker
11:54 AM Revision 1ef72ae8 (cdm-dataportal): Merge tag '5.26.7' into develop
tagging HFX Andreas Kohlbecker
11:54 AM Revision ebdf90b5 (cdm-dataportal): Merge branch 'hotfix/5.26.7'
Andreas Kohlbecker
11:54 AM Revision cac6121d (cdm-dataportal): ref #9765 bigger weight range for ext-links and more allowed charagters for link field
Andreas Kohlbecker
11:54 AM Revision 5683cde6 (cdm-dataportal): bigger weight range for ext-links
Andreas Kohlbecker
11:53 AM Revision d9086dd9 (cdm-dataportal): ref #9765 bigger weight range for ext-links and more allowed charagters for link field
Andreas Kohlbecker
11:40 AM Revision 15dfa454 (cdm-dataportal): bigger weight range for ext-links
Andreas Kohlbecker
11:35 AM Revision c0e9dfbb (taxeditor): ref #9755 adapt taxeditor to cultivarEpi changes
Andreas Müller
11:13 AM Revision 9f8cc8f0 (taxeditor): update taxeditor test H2 to 5.27.0
Andreas Müller
11:11 AM Revision 2d40c638 (cdm-vaadin): update vaadin to 5.27.0
Andreas Müller
11:09 AM Revision 04429991 (cdmlib): update cdmlib test H2 to 5.27.0
Andreas Müller
11:08 AM Revision ae57f5e3 (cdm-dataportal): Merge tag '5.26.6' into develop
tagging hotfix Andreas Kohlbecker
11:08 AM Revision cf62482d (cdm-dataportal): Merge branch 'hotfix/5.26.6'
Andreas Kohlbecker
11:08 AM Revision 588e5e89 (cdm-dataportal): fix #9763 adapting broken exist function to new data scheme
Andreas Kohlbecker
11:04 AM Revision 1684fbfa (cdmlib): minor
Andreas Müller
11:01 AM Revision a1646aec (cdmlib): change to model version 5.27.0
Andreas Müller
11:01 AM Revision a0c48c4a (cdmlib): ref #9761 move cultivar info to new group field where necessary
Andreas Müller
11:01 AM Revision 388be066 (cdmlib): ref #7640 fix update script for ISO country update
Andreas Müller
11:01 AM Revision 6cfc0581 (cdmlib): ref #9755 update cultivarName->cultivarEpithet
Andreas Müller
11:01 AM Revision 58a72ae6 (cdmlib): ref #7640 include titleCache for country label update
Andreas Müller
11:01 AM Revision 3ded2197 (cdmlib): ref #9757 fix cultivar group parser text encoding
Andreas Müller
11:01 AM Revision bf56e79a (cdmlib): cleanup
Andreas Müller
11:01 AM Revision dc7815d5 (cdmlib): ref #7640, ref #4209 update country labels and split label from official title (still handled in description)
Andreas Müller
11:01 AM Revision bd2f30c9 (cdmlib): ref #9755 add abbrev to cultivar group representation
Andreas Müller
11:01 AM Revision f7e576ba (cdmlib): ref #9761 add cultivarGroup column
Andreas Müller
09:50 AM feature request #7640 (Resolved): Update ISO country names where necessary
Andreas Müller

09/15/2021

11:04 PM feature request #4209 (In Progress): Better handling of labels, abbreviations and descriptions in ISO 3166-1 (country) terms
Andreas Müller
04:59 PM Revision 5ab7edf7 (cdm-dataportal): fixing git auto-merge error
Andreas Kohlbecker
04:51 PM Revision c906cdf5 (cdm-dataportal): Merge tag '5.26.5' into develop
tagging hotfix Andreas Kohlbecker
04:51 PM Revision 81cf0d42 (cdm-dataportal): Merge branch 'hotfix/5.26.5'
Andreas Kohlbecker
04:51 PM Revision 712d7217 (cdm-dataportal): ref #9764 autocomplete for category field
Andreas Kohlbecker
04:51 PM Revision 43f4c619 (cdm-dataportal): ref #9764 adding missing category field
Andreas Kohlbecker
04:50 PM bug #9764 (Closed): external-links form misses category field
Andreas Kohlbecker
04:12 PM bug #9764 (Closed): external-links form misses category field
add a field for category with auto suggest combobox Andreas Kohlbecker
04:48 PM Revision 955f2191 (cdm-dataportal): ref #9764 autocomplete for category field
Andreas Kohlbecker
04:15 PM Revision 73780c64 (cdm-dataportal): ref #9764 adding missing category field
Andreas Kohlbecker
04:10 PM bug #9763 (Closed): adding new external link broken
Andreas Kohlbecker
04:09 PM bug #9763 (Resolved): adding new external link broken
Applied in changeset commit:cdm-dataportal|3700d60368ddb0b49899cbfbdb59e6a7b5999306. Andreas Kohlbecker
03:58 PM bug #9763 (Closed): adding new external link broken
adding a new external link fails with a WSOD Andreas Kohlbecker
04:09 PM Revision 3700d603 (cdm-dataportal): fix #9763 adapting broken exist function to new data scheme
Andreas Kohlbecker
03:48 PM feature request #9761 (In Progress): Add cultivarGroup as field for handling cultivar groups and grex
Andreas Müller
01:55 PM feature request #9761 (Closed): Add cultivarGroup as field for handling cultivar groups and grex
This is needed as in cultivar names the cultivar epithet can exist together with cultivar group epithet and/or grex e... Andreas Müller
03:45 PM bug #9762 (Closed): Handle cultivars correctly in TaxEditor
copied from #9755
* If ICNCP is selected make only cultivar ranks (#6387) available
* If a cultivar rank is selec...
Andreas Müller
01:53 PM Revision a26701d8 (cdm-dataportal): Merge tag '5.26.4' into develop
tagging hotfix 5.26.4 Andreas Kohlbecker
01:52 PM Revision dfe044b2 (cdm-dataportal): Merge branch 'hotfix/5.26.4'
Andreas Kohlbecker
01:52 PM Revision 9bd9c1f2 (cdm-dataportal): fix #9760 fixing mime-type detection
Andreas Kohlbecker
01:43 PM bug #9760 (Closed): image gallery shows webapp icons instead of thumbnails
Andreas Kohlbecker
01:42 PM bug #9760 (Resolved): image gallery shows webapp icons instead of thumbnails
Applied in changeset commit:cdm-dataportal|c2162a7475c7dac6d90a663403cc23a6be054a75. Andreas Kohlbecker
01:41 PM bug #9760 (Closed): image gallery shows webapp icons instead of thumbnails
see :
![](picture950-1.png)
Andreas Kohlbecker
01:42 PM Revision c2162a74 (cdm-dataportal): fix #9760 fixing mime-type detection
Andreas Kohlbecker
01:32 PM Revision 5bf13b75 (taxeditor): ref #9710: missed adaption in StructuredAggregationConfigurationWizard
Katja Luther
01:00 PM Revision 66889a42 (taxeditor): ref #9710: do not use cdm objects for dds and descriptions in character matrix
Katja Luther
12:29 PM Revision 71559ffe (cdmlib): ref #9710: switch to dtos for descriptive data set and descriptions for character matrix
Katja Luther
11:30 AM Revision a8d7b69f (cdmlib): fix #9759 fix not existing protectedCache field in persistence matcher
Andreas Müller
10:56 AM bug #9759 (Resolved): Person deduplication does not work due to new collectorTitleCache field
Applied in changeset commit:cdmlib|7cb329fc60af691dd901f0cfb66bad9307cbc0ae. Andreas Müller
10:36 AM bug #9759 (Closed): Person deduplication does not work due to new collectorTitleCache field
... also check if this is the case for nomenclaturalTitleCache Andreas Müller
10:55 AM Revision 7cb329fc (cdmlib): fix #9759 fix missing deduplication for parsed person (and maybe also team)
Andreas Müller
10:42 AM Revision 65b3409e (cdmlib): cleanup
Andreas Müller
10:36 AM feature request #9747: Make languages editable in TaxEditor
The doubled separators are removed. Please review. Katja Luther
10:35 AM feature request #9747: Make languages editable in TaxEditor
Andreas Müller wrote:
> The menu for vocabularies and term trees should use the same order. Please move the "languag...
Katja Luther
10:35 AM feature request #9747: Make languages editable in TaxEditor
Andreas Müller wrote:
> Functionallity works and ticket can be closed.
>
> However, the Language class has 1 more...
Katja Luther
10:34 AM feature request #9747 (Resolved): Make languages editable in TaxEditor
Applied in changeset commit:taxeditor|5cabd426f71e5cc0254e32e414ff7afc26b92ed5. Katja Luther
09:52 AM feature request #9747: Make languages editable in TaxEditor
Andreas Müller wrote:
> According to commit 53e555624aa688 there is lots of commented code now in OpenDefinedTermEdi...
Katja Luther
10:34 AM Revision 5cabd426 (taxeditor): fix #9747: add language detail element and smaller changes in menu
Katja Luther

09/14/2021

09:52 PM bug #8936: Improve default distribution formatting
Do you have some example links on test server? Andreas Müller
09:51 PM feature request #9747: Make languages editable in TaxEditor
According to commit 53e555624aa688 there is lots of commented code now in OpenDefinedTermEditorHandlerE4.java . Can t... Andreas Müller
09:49 PM feature request #9747: Make languages editable in TaxEditor
Functionallity works and ticket can be closed.
However, the Language class has 1 more attribute iso639_1 which ref...
Andreas Müller
09:44 PM feature request #9747: Make languages editable in TaxEditor
Minor issue:
There is a separator below "New" but no other group or item:
![](picture451-1.png)
Can we remov...
Andreas Müller
09:34 PM feature request #9747 (Feedback): Make languages editable in TaxEditor
The menu for vocabularies and term trees should use the same order. Please move the "language" menu item to the same ... Andreas Müller
10:43 AM feature request #9747: Make languages editable in TaxEditor
Now the implementation uses the cdmVocabularyUuid method. Katja Luther
09:32 PM feature request #7646 (Closed): Implement parser and formatter for "hort."
I tested in editor and it also works there. So I close the ticket. Andreas Müller
09:18 PM task #9744: Find suitable name for the Freetext- or Name-Editor
HOORAY !!!!! Andreas Kohlbecker
09:12 PM task #9744 (Closed): Find suitable name for the Freetext- or Name-Editor
We decided to use "Taxon Editor" for the formerly labeled "Name Editor" and not to change "bulk editor" labels for no... Andreas Müller
09:10 PM task #9744 (Resolved): Find suitable name for the Freetext- or Name-Editor
WGB:
einverstanden, das ist eine gute Lösung, ich wäre nicht für „Freetext“.
Eine Frage wäre noch, ob wir bei „B...
Andreas Müller
04:37 PM feature request #9757 (In Progress): Make cultivars, cultivar groups and grexes parsable
Andreas Müller
09:47 AM feature request #9757 (Closed): Make cultivars, cultivar groups and grexes parsable
See http://www.actahort.org/chronica/pdf/sh_10.pdf
Allowed characters: Art. 21.18
Andreas Müller
04:14 PM feature request #6387: [Rule] Rank rule for CultivarPlantNames
On convar see https://github.com/tdwg/tnc/blob/master/tcs-deconstructed/TaxonomicRank.md#taxonomicrankcultivatedplant... Andreas Müller
03:17 PM feature request #9758 (In Progress): EmailService implemented
Andreas Kohlbecker
03:17 PM feature request #9758: EmailService implemented
We can use the `org.springframework.mail.javamail.JavaMailSenderImpl` instead of implementing our own service Andreas Kohlbecker
03:10 PM feature request #9758 (Closed): EmailService implemented
A service to send emails
Configuration of the following properties should be possible via a Spring-PropertySource:...
Andreas Kohlbecker
02:56 PM feature request #9755 (In Progress): Open issues for cultivar handling
Existing cases:
~~~
SELECT *
FROM TaxonName tn INNER JOIN DefinedTermBase r ON r.id = tn.rank_id
WHERE r.uuid =...
Andreas Müller
02:33 PM Revision edd21192 (cdmlib): ref #9757 further improve cultivar parsing
Andreas Müller
02:32 PM Revision df6429b7 (cdmlib): cleanup
Andreas Müller
12:34 PM Revision d9add188 (cdmlib): ref #9754 , ref #9757 further improve cultivar name parsing and formatting
Andreas Müller
11:05 AM bug #9452 (Closed): Name Type Editor: allowed combination of fields
Andreas Kohlbecker
10:54 AM bug #9452: Name Type Editor: allowed combination of fields
Works as expected, the bug is fixed, fine. Ticket can be closed. Wolf-Henning Kusber
11:04 AM feature request #9706 (Closed): Name Editor for Sections: show simple form for in-authors without full citation
Andreas Kohlbecker
10:59 AM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
Works as expected. Ticket can be closed. Wolf-Henning Kusber
10:06 AM Revision 3bed313a (taxeditor): revert changes because cdmlib still missing
Katja Luther
09:57 AM Revision 487f1047 (taxeditor): fix #9747: use language uuid to check for managed cdm vocabulary
Katja Luther
09:49 AM Revision 7d2d06a9 (cdmlib): ref #9757 first implementation of cultivar parsing
Andreas Müller
09:45 AM Revision b668dc22 (cdmlib): cleanup
Andreas Müller
09:44 AM Revision d515ad59 (cdmlib): ref #9754 first implementation for cultivar formatter
Andreas Müller

09/13/2021

02:07 PM bug #8936 (Resolved): Improve default distribution formatting
please review
Andreas Kohlbecker
02:07 PM bug #8936: Improve default distribution formatting
The following portals need to be checked after the release:
~~http://portal.cybertaxonomy.org/diptera/~~ ':
~~htt...
Andreas Kohlbecker
01:41 PM bug #8936: Improve default distribution formatting
New parameter `item_suffix` with default value "`: `" Andreas Kohlbecker
01:36 PM bug #8936 (In Progress): Improve default distribution formatting
need to solve #9756 in the context of this ticket since the issues are more closely related than initially assumed Andreas Kohlbecker
08:45 AM bug #8936 (Closed): Improve default distribution formatting
Andreas Kohlbecker
08:44 AM bug #8936 (Resolved): Improve default distribution formatting
Applied in changeset commit:cdm-dataportal|abf4371572af20f9f408c45fc893b75695fb169e. Andreas Kohlbecker
02:00 PM Revision 262f020c (cdm-dataportal): ref #8936 introducing additional hierarchical distribution style parameter + migration of old styles
Andreas Kohlbecker
02:00 PM Revision 5777b93e (cdm-dataportal): ref #9756 introducing additional hierarchical distribution style parameter + migration of old styles
Andreas Kohlbecker
01:43 PM bug #9756 (Duplicate): Footnote key placement in hierarchical distributions improved
closing as duplicate of #8936 Andreas Kohlbecker
08:35 AM bug #9756 (Duplicate): Footnote key placement in hierarchical distributions improved
See:
![](picture317-1.png)
the footnote key should come before the colon
Example: https://132.248.13.83/cd...
Andreas Kohlbecker
01:39 PM Revision b6d8f977 (cdmlib): ref #9747 add getCdmVocabularyUuids to Language
Andreas Müller
01:27 PM Revision 7a56df2b (cdmlib): ref #9747 add getCdmVocabularyUuids to Language
Andreas Müller
01:27 PM Revision 6724ea84 (cdmlib): cleanup
Andreas Müller
01:20 PM feature request #9747: Make languages editable in TaxEditor
To add the language editor can be done in 5 minutes, but to allow the editing for non cdm languages and do not allow ... Katja Luther
01:17 PM feature request #9747 (Resolved): Make languages editable in TaxEditor
Applied in changeset commit:taxeditor|53e555624aa688350d4c89e43e8a3f172e534022. Katja Luther
01:17 PM Revision 53e55562 (taxeditor): fix #9747: add language vocabulary editor
Katja Luther
08:44 AM Revision abf43715 (cdm-dataportal): fix #8936 new default format for hierarchical distributions
Andreas Kohlbecker

09/11/2021

03:52 PM feature request #9754 (In Progress): Adapt cache strategy to support cultivar names
Andreas Müller
09:41 AM feature request #9754: Adapt cache strategy to support cultivar names
Further problems for cultivar groups are:
* The "Group" epithet may need translation (Art. 15.1) - alternatively t...
Andreas Müller
09:00 AM feature request #9754: Adapt cache strategy to support cultivar names
There is a problem that cultivar names to not have a "parent rank" and therefore it needs to be computed which epithe... Andreas Müller
08:55 AM feature request #9754 (Closed): Adapt cache strategy to support cultivar names
copied form #6963
We need a cache strategy for Cultivar Status (Art. 14), Group Status (Art. 15) and Grex Status (...
Andreas Müller
03:08 PM feature request #9755 (In Progress): Open issues for cultivar handling
~~Cultivar names, groups and grex are currently not parsable~~ (#9757)
~~Cultivar names, groups and grex need to b...
Andreas Müller
03:06 PM feature request #5981: Add abbreviation to Rank "Cultivar"
Note: according to the code 'cv.' should not be used for cultivar names (anymore?) Andreas Müller

09/10/2021

07:47 PM Revision 5b238ca8 (cdm-vaadin): ref #6732 fixing layout problems in valo-theme with native selects
Andreas Kohlbecker
05:47 PM Revision ad6c211a (cdm-vaadin): ref #6732 rank selector offering compact and full list of ranks
Andreas Kohlbecker
08:13 AM Revision 09e946a5 (taxeditor): Merge branch 'hotfix/5.26.1'
jenkins

09/09/2021

06:02 PM bug #9701 (Closed): Order and display of different typifications for one name in one reference
Andreas Kohlbecker
04:52 PM bug #9701: Order and display of different typifications for one name in one reference
Working not exactly as expected, but a little bit better :)
The colours are nice, the plural thing is also solved.
...
Wolf-Henning Kusber
02:40 PM Revision 3154576c (taxeditor): ref #9704: fix NPE when moving node to root
Katja Luther
02:25 PM bug #9452: Name Type Editor: allowed combination of fields
please review Andreas Kohlbecker
02:25 PM bug #9452 (Resolved): Name Type Editor: allowed combination of fields
Applied in changeset commit:cdm-vaadin|684d6197df0466dceb8ba592d5e4562593060a8a. Andreas Kohlbecker
02:25 PM Revision 684d6197 (cdm-vaadin): fix #9452 consistend an sensible handling of name type status flags
Andreas Kohlbecker
02:18 PM bug #9753 (New): New adapted wizard(s) for exports/imports using the generic wizard
Some exports and imports still use the generic wizard for exports/imports using the boolean attributes of the configu... Katja Luther
02:09 PM Revision 33545aa0 (cdmlib): improve attribute names and handle all name identifier in cdmlight
Katja Luther
01:42 PM Revision 99814cc6 (cdm-vaadin): fixing LIE caused by new source structure in designationSource
Andreas Kohlbecker
01:36 PM Revision 2b76987d (cdm-vaadin): fixing typo
Andreas Kohlbecker
01:34 PM Revision 819da7cb (taxeditor): adapt method name to label of checkbox
Katja Luther
01:31 PM Revision 16ff3561 (cdmlib-apps): cleanup
Andreas Müller
01:30 PM Revision fb00e77a (cdmlib-apps): ref #9752 adapt mexico import for flora-of-mexico import
Andreas Müller
01:22 PM Revision 632d2f2e (cdmlib): ref #9752 make it possible to add source with original information for imports
Andreas Müller
01:21 PM Revision 7f5ffbcf (cdmlib): ref #7646 , ref #9752 make "hort." parseable
Andreas Müller
01:20 PM feature request #7646 (Resolved): Implement parser and formatter for "hort."
The parser has been implemented for the flora mexico import (#9752). A formatter is not necessary as we do not use a ... Andreas Müller
01:17 PM feature request #6677 (Rejected): Add "hort." flag to Botanical names
For the above reasons adding the flag is rejected. Andreas Müller
01:13 PM Revision ce64cc74 (cdmlib): ref #9752 remove warning for getTitleWithoutYearAndAuthor for some refTypes
Andreas Müller
01:11 PM task #9752 (Closed): Import for Flora of Mexico
Andreas Müller
12:37 PM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
please review Andreas Kohlbecker
12:37 PM feature request #9706 (Resolved): Name Editor for Sections: show simple form for in-authors without full citation
Applied in changeset commit:cdmlib|051b6f6e98d82d69bd8ffefdd0c0df7d1e5958ad. Andreas Kohlbecker
12:13 PM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
Andreas Kohlbecker wrote:
> this behavior should be activated when TaxonNamePopupEditorMode.NOMENCLATURALREFERENCE_S...
Andreas Kohlbecker
12:36 PM Revision 051b6f6e (cdmlib): fix #9706 reducing field visibility of sections to authors, pages and inReference
Andreas Kohlbecker
12:34 PM task #9744: Find suitable name for the Freetext- or Name-Editor
Die Verwechslungsgefahr zwischen "Name Editor" und "Name Bulk Editor" kommt vermutlich auch daher, dass bei den Bulke... Andreas Kohlbecker
10:51 AM task #9744: Find suitable name for the Freetext- or Name-Editor
WGB:
“Name Editor” ist tatsächlich historisch, und muss immer so erklärt werden. Einen technischen Namen („Freetex...
Andreas Müller
11:12 AM bug #9751: [CdmLight] Exported identifier types should be configurable
AM:
... wobei ich mir nicht ganz sicher bin, wie dringend wir die brauchen. Wenn die Identifier in eigener Tabelle...
Andreas Müller
10:55 AM bug #9751 (New): [CdmLight] Exported identifier types should be configurable
If all identifiers can be exported (see #9750), it should be configurable which types are exported. Katja Luther
10:53 AM bug #9750 (New): [CdmLight] Export all name identifier
Actually only IPNI, Tropicos and WFO identifiers are exported, but the export should handle all kind of identifiers. Katja Luther
10:38 AM bug #9749 (Closed): NPE when opening SpecimenImportView
Works as expected now. Andreas Müller
09:30 AM bug #9749 (Resolved): NPE when opening SpecimenImportView
Applied in changeset commit:taxeditor|51dfe6f454155927ac4d50c50474d8d13c3e2bd4. Katja Luther
09:07 AM bug #9749 (Closed): NPE when opening SpecimenImportView
When opening the biocase or gbif import view:
~~~ text
last remote method : http://160.45.63.230:80/cdmserver/car...
Katja Luther
10:38 AM Revision c7ab12a6 (cdmlib): ref #9701 method to find the highest type status in a TypeDesignationWorkingSet
Andreas Kohlbecker
10:33 AM Revision 057b35b0 (cdmlib): ref #9701 taggedText to string method with exclude option
Andreas Kohlbecker
10:24 AM bug #9746: Remove excluded and unplaced flags from right click menu
Related to this ticket: if the doubtful flag is set in the taxon node dialogue the navigator seems not to be refreshe... Andreas Müller
10:16 AM bug #9746 (Feedback): Remove excluded and unplaced flags from right click menu
The menu still shows the menu entries but disabled:
![](picture920-1.png)
Andreas Müller
09:52 AM Revision 9eeecf39 (taxeditor): fix #9749: fix NPE when opening specimen import view
Katja Luther
09:15 AM Revision 51dfe6f4 (taxeditor): fix #9749: fix NPE when opening specimen import view
Katja Luther
08:49 AM Revision 7723d3d3 (taxeditor): Updated version in pom / project files to taxeditor version : 5.26.1 and cdmlib version : 5.26.0
jenkins

09/08/2021

10:16 PM bug #9701 (Resolved): Order and display of different typifications for one name in one reference
please review Andreas Kohlbecker
03:26 PM bug #9701: Order and display of different typifications for one name in one reference
Other display issues, related to #9308, can be seen here:
![](picture866-1.png)
Andreas Kohlbecker
10:15 PM Revision 4786c609 (cdm-vaadin): ref #9701 defined order of typifications in registration workingset editors
Andreas Kohlbecker
05:11 PM Revision a4ffd5b8 (cdm-vaadin): ref #9701 better display of typifications in registration workingset editors
Andreas Kohlbecker
03:08 PM feature request #9748 (New): Refactor identifiers
Currently we have the Identifier class (Identifier string + type) and specific classes for DOI, ORCID, LSID etc used ... Andreas Müller
02:17 PM task #8438 (Closed): remove featureTree/* web services in August 2021 if they are unused
all featureTree/* web services removed Andreas Kohlbecker
02:17 PM task #8438 (Resolved): remove featureTree/* web services in August 2021 if they are unused
Applied in changeset commit:cdmlib|567659e868b4bc34d54aa11c03f3db9ee78c4334. Andreas Kohlbecker
02:10 PM task #8438: remove featureTree/* web services in August 2021 if they are unused
`/featureTree` is no longer being used, checked with `zgrep "/featureTree" cdm-server.2021*`
Andreas Kohlbecker
02:16 PM Revision 567659e8 (cdmlib): fix #8438 removing all featureTree/* web services
Andreas Kohlbecker

09/07/2021

03:28 PM Revision fd958579 (cdmlib): ref #9747 add language to TermType.getEmptyDefinedTermBase
Andreas Müller
03:26 PM feature request #9747 (Closed): Make languages editable in TaxEditor
Currently languages are not yet editable in TaxEditor.
For the CDM this is correct. But other languages should be ...
Andreas Müller

09/06/2021

03:56 PM task #9744: Find suitable name for the Freetext- or Name-Editor
AM:
Freitext-Editor finde ich persönlich nicht schlecht, höchstens, außer das in Zukunft auch mal andere Freitext ...
Andreas Müller
03:43 PM task #9744: Find suitable name for the Freetext- or Name-Editor
>Name-Editor is being used in the documentation for historic reasons.
Historically Cherian was using this term int...
Andreas Müller
03:22 PM task #9744: Find suitable name for the Freetext- or Name-Editor
Ein älterer Thread zum Thema:
WGB:
ok, verstanden. Ich finde finde den Begriff Taxon Node für die konkrete Stel...
Andreas Müller
10:46 AM task #9744: Find suitable name for the Freetext- or Name-Editor

> Also Freitext Editor?
>
> @Katja Hast du die Email-Diskussion zu diesem Thema mit Walter denn gefunden und zu ...
Andreas Kohlbecker
03:45 PM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
can be reviewed from 7.9.21 on Andreas Kohlbecker
03:44 PM task #9308 (Resolved): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Applied in changeset commit:cdm-vaadin|574886857ce6fde57a478eb2ae3477eaa72ebd11. Andreas Kohlbecker
03:43 PM Revision 57488685 (cdm-vaadin): fix #9308 more structured formatting of type labels and removing "designated by ..."
Andreas Kohlbecker
03:04 PM feature request #8979: Prevent misuse of field initial for personal names
ready for review on 7.9.21 Andreas Kohlbecker
03:02 PM feature request #8979 (Resolved): Prevent misuse of field initial for personal names
Applied in changeset commit:cdm-vaadin|e1e73a5eae7239539b205b44b365b52c591ba21d. Andreas Kohlbecker
03:02 PM Revision e1e73a5e (cdm-vaadin): fix #8979 tooltip descriptions for all person fields
Andreas Kohlbecker
12:36 PM bug #9745 (Closed): pre-configured map layers using https
all map layers are switched to https Andreas Kohlbecker
12:18 PM Revision 961d35b0 (cdm-dataportal): updating documentation
Andreas Kohlbecker
12:14 PM Revision f568d5e4 (cdm-dataportal): Merge tag '5.26.3' into develop
tagging release 2.26.3 Andreas Kohlbecker
12:14 PM Revision 27989fb5 (cdm-dataportal): Merge branch 'hotfix/5.26.3'
Andreas Kohlbecker
12:14 PM Revision fe4ffeba (cdm-dataportal): ref #9745 switching geo.cybertaxonomy.org to https
Andreas Kohlbecker
10:33 AM bug #9746: Remove excluded and unplaced flags from right click menu
Please review. I also fixed the refresh problem, so now the menu should show set/remove menu item correctly immediate... Katja Luther
10:31 AM bug #9746 (Resolved): Remove excluded and unplaced flags from right click menu
Applied in changeset commit:taxeditor|dc7a943c33e9a733dbf51ba7e86eaf91d7ff2ec2. Katja Luther
08:30 AM bug #9746 (Closed): Remove excluded and unplaced flags from right click menu
The flags unplaced and excluded need more informations therefore it is does not make sense to have it in the right cl... Katja Luther
10:21 AM Revision dc7a943c (taxeditor): fix #9746: remove unplaced and excluded from right click menu of navigator
Katja Luther

09/03/2021

05:51 PM Revision e9e677a6 (cdm-dataportal): Merge tag '5.26.2' into develop
tagging release 5.26.2 Andreas Kohlbecker
05:50 PM Revision f9fc9292 (cdm-dataportal): Merge branch 'hotfix/5.26.2'
Andreas Kohlbecker
05:50 PM Revision 47cd8305 (cdm-dataportal): ref #9745 switching all map layers to https (except for geo.cybertaxonomy.org)
Andreas Kohlbecker
05:49 PM bug #9745: pre-configured map layers using https
the correct URL for http://cybertaxonomy.org:8082/mapproxy/service is http://geo.cybertaxonomy.org/mapproxy/service a... Andreas Kohlbecker
05:01 PM bug #9745: pre-configured map layers using https
http://cybertaxonomy.org:8082/mapproxy/service
does not yet support https !!!
Andreas Kohlbecker
04:55 PM bug #9745 (Closed): pre-configured map layers using https
the maps layers provided in are still using http, this results in mixed in http content in the browser like http://b.... Andreas Kohlbecker
01:53 PM task #9744 (Closed): Find suitable name for the Freetext- or Name-Editor
So far, we don't have a commonly accepted name for the "Freetext- or Name- or Wathever-Editor" which is consistently... Andreas Kohlbecker
11:18 AM Revision 2ec64080 (cdmlib): cleanup
Andreas Müller
11:03 AM bug #9742: embedded h2 database in server mode for connection pooling
This is probably more a cdmlib issue then a taxeditor issue Andreas Müller
10:18 AM bug #9742 (New): embedded h2 database in server mode for connection pooling

ich versuche gerade, eine H2 Datenbank auf meinem Laptop zu installieren, in der Hoffnung, dass ich offline an der ...
Andreas Kohlbecker
10:43 AM bug #9463: UniversalViewer causes jQuery version conflict and breaks maps
using the UV webpack should solve the problem Andreas Kohlbecker
10:42 AM bug #9743: Universal Viewer - metadata component gets lost on leaving fullscreen mode
* a bug in our UV version?
* would using UV as webpack help? see also #9463
Andreas Kohlbecker
10:38 AM bug #9743 (New): Universal Viewer - metadata component gets lost on leaving fullscreen mode
Norbert: "Wenn ich im Cichorieae-Portal vom Vollbild-View des Viewers auf die verkleinerte Fensteransicht zurückschal... Andreas Kohlbecker

09/02/2021

03:42 PM bug #9729 (Closed): Incomplete bean property Team.nomenclaturalTitleCache
Andreas Müller
12:59 PM bug #9729: Incomplete bean property Team.nomenclaturalTitleCache
seems to be working in cdm-vaadin with the latest adaptions. I could not find any problems. Andreas Kohlbecker
09:23 AM Revision 0cee5989 (taxeditor): code cleaning, removing link with taxon in specimen tree editor
Katja Luther
09:16 AM Revision 485f856b (taxeditor): missing l10n
Katja Luther
12:53 AM feature request #8028: Better representation of web app media in the image gallery
Is there a follow-up or a already-handled-in ticket for the missing metadata issue? Andreas Müller
12:49 AM feature request #8028 (Feedback): Better representation of web app media in the image gallery
I tried this with taxon media (the original usecase from the description of this ticket).
On caryo_spp /test serve...
Andreas Müller

09/01/2021

11:45 PM bug #9741: cdm_dataportal_shortname_of truncates uninomial with not abbreviated author strings and causes other odds
Also #6203 might be relevant for this issue. Andreas Müller
02:40 PM bug #9741 (New): cdm_dataportal_shortname_of truncates uninomial with not abbreviated author strings and causes other odds
for example in https://132.248.13.83/cdm_dataportal/taxon/ed358b48-4e90-40d6-ba5f-10b81f18b72b
Asparagales Link is t...
Andreas Kohlbecker
01:57 PM feature request #7749 (Rejected): Add "Link with taxon selection" as an icon to the toolbar of the specimen tree editor
This will not be implemented for the reasons mentioned in #9732 (last issue). Instead we do have taxon navigator "ope... Andreas Müller
01:55 PM bug #9723 (Duplicate): Specimen tree editor: Function of "Link with taxon selection" in context menu unclear
This duplicates the last issue in #9732 and is fixed in the meanwhile (menu entry was removed). Andreas Müller
01:43 PM Revision 3de8ad27 (taxeditor): ref #9732: remove link with taxon selection menu item
Katja Luther
01:41 PM bug #9732: Open issues in specimen tree editor
Katja Luther wrote:
> • Die Funktionsweise von „Link with taxon selection“ ist mir nicht klar. Bezieht sich das auf ...
Andreas Müller
01:36 PM bug #9732: Open issues in specimen tree editor
NoK:
* Filter "All unit types" statt "Unknown unit type" wäre in der Tat logischer
* "Im search gibt’s den Type...
Andreas Müller
01:33 PM bug #9740 (Worksforme): Adapt Motive(Motif) to Subject in data portal
for details see #9732#note-3 Andreas Müller
01:18 PM bug #9728: NoSuchMethodException Team.areNomenclaturalTitle() breaks authortem editors
I made some adaptations to the changes. See also #9729#note-4 Andreas Müller
01:16 PM bug #9729: Incomplete bean property Team.nomenclaturalTitleCache
Please check if this fullfills the requirements in vaadin. Andreas Müller
01:15 PM bug #9729 (Resolved): Incomplete bean property Team.nomenclaturalTitleCache
I adapted the changes so that it is similar to IdentifiableEntity.titleCache implementation.
This means:
* the ...
Andreas Müller
01:10 PM Revision 9d57197e (cdmlib): Cleanup and javadoc
Andreas Müller
01:08 PM Revision c25885b8 (cdmlib): ref #9729, #9728, #9664 remove deprecated method setNomenclaturalTitle
Andreas Müller
01:03 PM Revision a32f4c74 (cdmlib): ref #9729, #9728, #9664 remove calls to deprecated method setNomenclaturalTitle
Andreas Müller
12:47 PM Revision 5e7ceaad (cdmlib): ref #9729, #9728, #9664 Adapt handling of nomenclaturalTitleCache setter and javadoc
Andreas Müller
12:37 PM Revision efd417dd (cdmlib): cleanup
Andreas Müller
11:08 AM Revision a931e823 (taxeditor): load availbale languages
Katja Luther
11:04 AM Revision 279f5ec4 (taxeditor): ref #9739: use common name languages for combo and adapt pref page
Katja Luther
09:56 AM bug #9739: Add common name languages preference to DB preferences
This exception comes from the multilanguage prefernce, but needs to be fixed as well. Katja Luther

08/31/2021

11:09 PM Revision fd47e8cf (taxeditor): cleanup
Andreas Müller
11:08 PM bug #9739 (Feedback): Add common name languages preference to DB preferences
Now it exists, but when saving I got:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am...
Andreas Müller
09:09 AM bug #9739 (Resolved): Add common name languages preference to DB preferences
Katja Luther
09:05 AM bug #9739: Add common name languages preference to DB preferences
Maybe the editor was not build?
I checked the nightly build and the common name languages where available for DB p...
Katja Luther
05:20 PM bug #9732: Open issues in specimen tree editor
> Als Derived Unit – Media specimen – Kind of media gibt’s nur “Specimen scan”. Ich fände auch hier “Still image” gut... Andreas Müller
05:18 PM bug #9732: Open issues in specimen tree editor
> Der Titel des Bildes im Tree ist das Specimen-Aufsammlungs-Zitat, das ist etwas unglücklich (und repetitiv), finde ... Andreas Müller
05:08 PM bug #9732: Open issues in specimen tree editor
AM:
nur zu motive <-> motif. Bist du da sicher. Laut https://dict.leo.org/englisch-deutsch/motive ist motive eher ...
Andreas Müller
09:15 AM bug #9735 (Closed): [CdmLight] Add type specimen to specimen table
Katja Luther
09:13 AM bug #9645 (Closed): CDM Light: Add Type Statement Reference to homotypicalGroup.csv
Katja Luther
09:08 AM bug #9737 (Closed): [CdmLight] Add two dummy lines for empty tables
Katja Luther
09:07 AM bug #9736 (Closed): [CdmLight] Add new table for type designation to specimen relationship
This ticket can be closed. Katja Luther

08/30/2021

09:07 PM bug #9263 (Closed): Unify case for type designation status
Andreas Kohlbecker wrote:
> Mir ist nicht klar was ich hier machen soll. Die im Kommentar 3 erwähnten FIXMEs sind al...
Andreas Müller
08:23 PM bug #9704 (Closed): Several issues when trying to move taxon with dialogue
Both issues seem to be fixed. Andreas Müller
08:20 PM Revision 0351b2c7 (cdmlib): cleanup
Andreas Müller
08:18 PM Revision c11c91e6 (taxeditor): cleanup
Andreas Müller
07:41 PM bug #9736 (In Progress): [CdmLight] Add new table for type designation to specimen relationship
As there are already commits on this ticket it seems to be at least "In Progress".
If resolved already please adapt ...
Andreas Müller
07:34 PM bug #9739 (Feedback): Add common name languages preference to DB preferences
The current db preferences menu only shows "multi-language support" but not "languages for common names".
Something ...
Andreas Müller

08/27/2021

11:26 AM bug #9738 (Closed): NomenclaturalSourceFormatter throws OutOfMemory with only protected titleCache
Andreas Müller
09:53 AM bug #9739 (Resolved): Add common name languages preference to DB preferences
this should be done, please review. Katja Luther
09:52 AM bug #9739 (Closed): Add common name languages preference to DB preferences
The common name languages should be available as db preferences. Katja Luther
09:46 AM Revision 7f73ebf0 (taxeditor): add common name language pref to db preferences
Katja Luther

08/26/2021

08:39 AM Revision 9f26076a (taxeditor): correct handling of canceled parent selection
Katja Luther

08/23/2021

11:25 AM Revision 47b3a58b (cdmlib): ref #9737: adapt test to dummy lines -continue
Katja Luther
11:19 AM Revision ff169db3 (cdmlib): ref #9737: adapt test to dummy lines
Katja Luther
10:04 AM Revision 2175409a (cdmlib): ref #9737: add dummy lines to cdmLight export
Katja Luther

08/21/2021

02:20 PM bug #9738 (Resolved): NomenclaturalSourceFormatter throws OutOfMemory with only protected titleCache
Applied in changeset commit:cdmlib|92aff79642cb9e91dbc6daf68ab3df60e9d17f7b. Andreas Müller
02:18 PM bug #9738 (Closed): NomenclaturalSourceFormatter throws OutOfMemory with only protected titleCache
Calling the formatter with a reference that has only a protected titleCache and with an empty microReference leads to... Andreas Müller
02:20 PM Revision 92aff796 (cdmlib): fix #9738 fix recursion for only titleCache protected nomenclatural source
Andreas Müller

08/18/2021

03:44 PM bug #9737 (Closed): [CdmLight] Add two dummy lines for empty tables
mail WB:
Und noch eine Bitte: Beim Einlesen bzw. beim Weiterverarbeiten der .csv Tabellen habe ich Mühe mit Tabell...
Katja Luther
01:01 PM Revision 093a4f0e (taxeditor): ref #9698: adapt plugin.xml
Katja Luther
12:49 PM Revision 55235f66 (cdmlib): adapted interface
Katja Luther
12:46 PM Revision a5a5ec1b (cdmlib): only log lazy initialisation exception while remove null from collection
Katja Luther
11:32 AM Revision 79f6eb28 (taxeditor): ref #9710: further work to avoid constraint violation exception
Katja Luther
09:07 AM Revision 68ae967f (taxeditor): ref #9698: add page for db preference for namerelationships
Katja Luther
 

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