Activity

From 07/07/2021 to 08/05/2021

08/05/2021

11:52 AM bug #9734 (Closed): Correct handling for secundum references when moving taxon to new parent: For the move of a synonym to a taxon and a taxon to a synonym we already implemented the handling of secundum referen... Katja Luther
11:39 AM bug #9733 (Closed): Removed facts still in factual data view: Katja Luther
11:39 AM bug #9733 (Closed): Removed facts still in factual data view: After call delete of a fact, the fact is still displayed in factual data view. Katja Luther

08/04/2021

10:50 AM bug #9732 (In Progress): Open issues in specimen tree editor: mail WB:
• Ist der Suchfilter „Unknown unit Type“ = „All unit types“? Dann wäre das ein deutlicheres Label.
• Im ... Katja Luther

08/03/2021

03:45 PM feature request #9197: Handle caucasus conspectus data in E+M and caucasus portal: 1.) Priority: show the areas in detailed map in the Caucasus Portal. The aggregation to Euro+Med is second priority, ... Eckhard von Raab-Straube
12:05 PM bug #9731 (Closed): error when showing to type specimens with same type status: Andreas Kohlbecker
12:05 PM bug #9731 (Resolved): error when showing to type specimens with same type status: Applied in changeset commit:cdm-dataportal|fab5713fd2ead63f7f565275327cef96af93d8c8. Andreas Kohlbecker
12:02 PM bug #9731 (Closed): error when showing to type specimens with same type status: Fails: https://www.phycobank.org/cdm_dataportal/registration?identifier=http://phycobank.org/102822
errors:
~... Andreas Kohlbecker
09:43 AM bug #9730 (Resolved): Open URL Button is disabled for persisted data: this should be fixed, please review. Katja Luther

08/02/2021

07:14 PM bug #9730 (Closed): Open URL Button is disabled for persisted data: mail Vanessa:
Hallo,
ich habe nach dem Herunterladen und Installieren der neuesten Updates folgendes Problem:
Di... Katja Luther
05:54 PM feature request #7251 (Closed): Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator: as far as I can see by now, the current implementation is fully sufficient. I will open a new ticket as far as there ... Andreas Kohlbecker
05:15 PM bug #9263 (Feedback): Unify case for type designation status: Mir ist nicht klar was ich hier machen soll. Die im Kommentar 3 erwähnten FIXMEs sind alle gelöst.
Kann dieses Tic... Andreas Kohlbecker
04:11 PM bug #9729 (In Progress): Incomplete bean property Team.nomenclaturalTitleCache: completeness of the the bean property has been fixed by cdmlib:135329fc
However, there are now redundant setters f... Andreas Kohlbecker
03:01 PM feature request #8028 (Closed): Better representation of web app media in the image gallery: I think the solution to this issue is sufficient by now. Once we decided for an alternative solution we can create a ... Andreas Kohlbecker
02:57 PM bug #9714 (Closed): cdm-light export: NotSerializableException when starting export via http invoker: Andreas Kohlbecker
02:48 PM bug #9721 (Closed): Specimen Table: wrong labels of specimen scans: Andreas Kohlbecker
02:45 PM bug #9728 (Closed): NoSuchMethodException Team.areNomenclaturalTitle() breaks authortem editors: Andreas Kohlbecker
02:13 PM bug #3240 (Duplicate): media/{uuid}/metadata service fails with some metadata: confirming that the issue is solved: http://test.e-taxonomy.eu/cdmserver/palmae/media/c3ab3ef1-7983-4ca3-afdf-c4476fd... Andreas Kohlbecker

07/30/2021

02:31 PM bug #9728 (Resolved): NoSuchMethodException Team.areNomenclaturalTitle() breaks authortem editors: Applied in changeset commit:cdmlib|135329fcb6fdfd546e6743cbdbf4c23aebb4dbfb. Andreas Kohlbecker
11:46 AM bug #9728 (Closed): NoSuchMethodException Team.areNomenclaturalTitle() breaks authortem editors: ~~~
java.lang.NoSuchMethodException: eu.etaxonomy.cdm.model.agent.Team.areNomenclaturalTitle()
at java.lang.Cl... Andreas Kohlbecker
02:00 PM bug #9729 (Closed): Incomplete bean property Team.nomenclaturalTitleCache: after solving #9664 the INomenclaturalAuthor.nomenclaturalTitleCache bean propery is inconsistent.
The setter needs ... Andreas Kohlbecker

07/16/2021

04:59 PM bug #9713 (New): h2 database creation does not use the supplied credentials: h2 databases created via the Datasource view always have the default h2 credentials: user:sa, pwd:<empty>
The cred... Andreas Kohlbecker
04:03 PM feature request #4021 (Feedback): H2 running in Server mode: Please can you clarify what this ticket is about?
What is expected? Andreas Kohlbecker
02:58 PM feature request #8529: [DISCUSS]Display of aggregated descriptions: Need to have a look if these tickets for taxon default values already exist. Andreas Müller
02:58 PM feature request #8529: [DISCUSS]Display of aggregated descriptions: NK:
... es geht um die default values für höhere Taxa. Wenn das woanders schon steht, kann das ticket gelöscht werden Andreas Müller

07/15/2021

06:11 PM feature request #9712 (New): Handling non image media in IIIF manifests: Media items which are no images need to be handled differently than images:
from Email conversation:
---
Im ... Andreas Kohlbecker
02:58 PM bug #9657 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51: The above request is now ok and does no longer throw an exception.
Sort order deviation in the portal an be neglec... Andreas Kohlbecker
02:52 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51: This should be fully fixed now. Comparing partials may not throw an exception anymore. Only the order of gathering ev... Andreas Müller
01:38 PM bug #9657 (In Progress): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51: Andreas Kohlbecker
01:38 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51: I tested again locally the line on `OccurrenceServiceImpl$1.compare(OccurrenceServiceImpl.java:588)` has changed but ... Andreas Kohlbecker
01:14 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51: Can you please test this? As we do do not have a test server for flora-malesiana-prospective I can't do this easily. Andreas Müller
12:00 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51: This problem occurs due to using the compareTo method for gatheringEvent.timeperiod.start in the newly updated compar... Andreas Müller
09:48 AM bug #9657 (Feedback): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51: the original exception has disappeared, but now the request portal/taxon/2debf5ee-cb57-40bc-af89-173d1d17cefe/rootUni... Andreas Kohlbecker
09:57 AM bug #9263: Unify case for type designation status: I put this to next current milestone as it should be reviewed soon. Please put to v5.18 once reviewed and tests adapt... Andreas Müller
09:42 AM bug #9237 (In Progress): FeatureTree SortIndex updater creates wrong sortindex: Unfortunately this does not seem to work yet. I tested with TaxEditor and the order of a feature tree changed after a... Andreas Müller
09:36 AM bug #9705 (Closed): Nomenclatural references with no title and microreference are not correctly formatted: Andreas Müller
09:25 AM task #9711 (New): Further improve matrix performance: see #9710 for why this is needed Andreas Müller
09:16 AM bug #9710 (Closed): DataIntegrityViolationException after adding a specimen to the matrix: Murat:
I come across this error message when I add a new specimen to the matrix.
Do I have to reopen the matrix w... Andreas Müller
09:06 AM bug #9684 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon() - [UPDATE] not permitted for 'anonymousUser': seems to be fixed completely since http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/taxon/d245083e-3bd... Andreas Kohlbecker
09:02 AM bug #9683 (Closed): Auto-initialize root bean: Andreas Kohlbecker
09:00 AM bug #7233 (Worksforme): LIE during processing of webservice request to /portal/taxon/{uuid}/taxonNodes: seems to be fixed, as this LIE is no longer reproducible with the latest code-base and a dump from the production sys... Andreas Kohlbecker
08:00 AM bug #9672 (Duplicate): NPE when CDMPreference contains allowOverride=NULL: closing as duplicate of #9673 Andreas Kohlbecker
07:53 AM task #9599 (In Progress): remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal: ok, so we will modify the cdmlib-remote webservices first to make the reference with citation detail available for th... Andreas Kohlbecker
07:48 AM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descriptions inside brackets: new ticket for this: #9709 Andreas Kohlbecker
07:47 AM bug #9709 (New): remove undesired dots from synonymy entries: As discussed in #9674, there are unwanted dots trailing synonym entries, these are unwanted. Andreas Kohlbecker

07/14/2021

06:37 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets: By the way, the test portal puts the note to the end while on production it is before sec which makes the situation w... Andreas Müller
06:35 PM feature request #9674 (Feedback): footnote keys for annotations to multilanguageText name descriptions inside brackets: Andreas Kohlbecker wrote:
> The dot at the end of the string needs more careful consideration as it seems if this co... Andreas Müller
06:28 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets: Andreas Kohlbecker wrote:
> The request referenced in comment 2 seems to be misplaced since i can't find this text i... Andreas Müller
06:14 PM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descriptions inside brackets: Andreas Kohlbecker
06:13 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets: This is the link to the according test-server portal page http://test.e-taxonomy.eu/dataportal/preview/caryophyllales... Andreas Kohlbecker
02:31 PM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation: this behavior should be activated when TaxonNamePopupEditorMode.NOMENCLATURALREFERENCE_SECTION_EDITING_ONLY is set in... Andreas Kohlbecker
02:19 PM bug #9708 (New): order of typedesignation in search results: this should also affect the name page
Problem: order of types is order of data entry
Solution: order should be ... Andreas Kohlbecker
11:14 AM task #8379: Review strange specimen implementations: moving to next milestone to speed up review phase of 5.25.0 Andreas Kohlbecker

07/13/2021

03:00 PM bug #9707 (New): Update details view (almost) immediately after parsing name: AM:
ja, das ist auch an vielen anderen Stellen sehr störend, dass der Detailsview für Namen sich nach dem Parsen e... Andreas Müller
11:44 AM feature request #9706 (Closed): Name Editor for Sections: show simple form for in-authors without full citation: When a scientific name appears in e.g. an article with authors, title, journal etc. and only this scientific name has... Wolf-Henning Kusber
10:54 AM bug #9705 (Resolved): Nomenclatural references with no title and microreference are not correctly formatted: Applied in changeset commit:cdmlib|88271645aba1610b2066edffb29b98e833bdafcc. Andreas Müller
10:44 AM bug #9705 (Closed): Nomenclatural references with no title and microreference are not correctly formatted: E.g. Catapedia Frisch & G.Thor in Jaklitsch & al., . 2016 from lichenes database. Andreas Müller

07/09/2021

09:33 PM bug #9703 (Resolved): Improve handling of type designations with no status in TypeDesignationSetManager: This should be fixed and can be reviewed. Andreas Müller
03:41 PM bug #7108: supress unwanted sourcetypes in handle_annotations_and_sources(): Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Works fine now and ticket can be closed.
> >
> > I only wo... Andreas Müller
03:30 PM bug #9704 (Closed): Several issues when trying to move taxon with dialogue: When entering "*" I got the first exception.
When selecting the classification (root) as new parent I got the seco... Andreas Müller
03:15 PM bug #9360 (Feedback): Parsed hybrids can not be persisted: Andreas Müller
03:09 PM bug #8140 (Closed): Update list of type designation status which allow an explicit source: Paralectotypes have been removed now. So I guess we can close this ticket. Andreas Müller
03:07 PM bug #8140 (Resolved): Update list of type designation status which allow an explicit source: Applied in changeset commit:cdmlib|e06767f2cf1514dc0521e5ba712e371d8f4e4de3. Andreas Müller
02:58 PM bug #9453: Implement NameDesignationBase.hasDesignationSource() which takes isRejected and isConserved into account: What exactly is meant here? Do we need an additional source field for the source saying that the type is rejected/con... Andreas Müller
02:37 PM feature request #9114: Handle malformed URIs in user type: This still needs feedback so I move to current milestone. Once it is fixed we can move to 5.19 where most of the work... Andreas Müller
02:30 PM feature request #6866 (In Progress): Improve specimen page: Looks like this is at least in progress as there are many commits.
Can we split this ticket into resolved issues a... Andreas Müller
02:27 PM bug #7781: original spelling is missing for accepted taxon in taxon page: This is a feature users asked for frequently Andreas Müller
02:24 PM bug #8965: Separator missing for aggregated descriptions of higher character tree nodes: I guess this can be implemented fast. Andreas Müller
02:13 PM feature request #8989: Implement flowering periods (temporal facts) in dataportal: This has hight priority and should be implemented latest in next milestone (if not possible in current milestone). Andreas Müller
01:27 PM bug #9661: Add possibility to clone a MAN: I guess this is fast to implement. Andreas Müller
01:26 PM bug #9662: CDMLight: Output should summarize all MAN with same name and err. sec: Katja, Andreas, should we think about a general formatter for homotypic groups, misapplication groups and full synony... Andreas Müller
01:07 PM bug #9688 (Closed): Make disabled fields copyable: For usernames it works as expected. Andreas Müller
01:01 PM bug #9688 (Resolved): Make disabled fields copyable: Katja Luther wrote:
> Fixed it for the Userdetails but the group name never was disabled. I can do this as well, but... Andreas Müller
11:45 AM bug #9688: Make disabled fields copyable: Fixed it for the Userdetails but the group name never was disabled. I can do this as well, but maybe this is a little... Katja Luther
10:26 AM bug #9688 (Feedback): Make disabled fields copyable: I have to reopen this as now the Username and Group.name fields are editable again, but shouldn't. See also #8277.
... Andreas Müller
11:40 AM feature request #8182: show blast search result: need to have a look whether this is completely fixed. Katja Luther
11:38 AM bug #9646 (Resolved): CDM Light: Add name relationship to concatenated string for homotypic group: this is fixed, last review of Walter and Nadja is needed. Katja Luther
10:11 AM bug #9646: CDM Light: Add name relationship to concatenated string for homotypic group: is this already fixed? Andreas Müller
10:32 AM bug #9672 (Feedback): NPE when CDMPreference contains allowOverride=NULL: I think this ticket can be closed (after reducing the description), as the only open issue is handled in #9673 Andreas Müller
10:29 AM bug #8277 (Duplicate): Username (and other fields) should allow c&p: This is a duplicate for#9688 and was generally fixed there. But be aware that there is a regression for username and ... Andreas Müller
10:08 AM task #2452 (Resolved): Media entities and Webpages: Decide, how far this is open and what needs to be done. Andreas Müller
10:06 AM bug #8113 (Resolved): Update TypeDesignationStatus labels: Check if fully fixed. Move back to UML 5.5 afterwards. Andreas Müller
10:05 AM feature request #8062 (Resolved): Make default preferences deletable serverside: Check, how far this is fixed. Create open issues ticket and move this ticket back to 5.8 Andreas Müller
09:59 AM bug #7904 (Resolved): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.: I guess this is solved with #9678. So the implemented solution is modification 1. The new cache strategy does not use... Andreas Müller
09:46 AM feature request #7932 (Resolved): Implement subject resolver for CdmPreferences: Needs to be reviewed and then moved back to 5.8. Open issues (also the one from note-14 should be moved to new ticket). Andreas Müller

07/08/2021

06:46 PM bug #9703 (Resolved): Improve handling of type designations with no status in TypeDesignationSetManager: Currently they are labeled as "Nametype: " wich is obviously not (always) correct.
Generally they should not get a... Andreas Müller
01:34 PM bug #9702 (Closed): TypeDesignationSetManager repeats specimen string for specimens without field unit: this works as expected now. Katja Luther
12:50 PM bug #9702: TypeDesignationSetManager repeats specimen string for specimens without field unit: please review Andreas Müller
12:49 PM bug #9702 (Resolved): TypeDesignationSetManager repeats specimen string for specimens without field unit: Applied in changeset commit:cdmlib|81de71a63d3ccf4f0ecfe9ba1981b1df86bd5678. Andreas Müller
10:31 AM bug #9702 (Closed): TypeDesignationSetManager repeats specimen string for specimens without field unit: If the type specimen only has a protected titleCache the specimen string is repeated 2x.
E.g. Prionus coriatius L.... Andreas Müller
11:19 AM bug #9629 (Closed): Better handling of OptionalDataException: works as expected. Katja Luther
11:14 AM feature request #9695 (Closed): Implement a preference for supportsConcepts: looks fine Katja Luther

07/07/2021

06:09 PM bug #9237 (Resolved): FeatureTree SortIndex updater creates wrong sortindex: Applied in changeset commit:cdmlib|8be5973f6635380f96052983a1f74aa118b2db41. Andreas Müller
04:42 PM feature request #9680 (Closed): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor: Works now as expected Andreas Müller
11:54 AM feature request #9680 (Resolved): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor: this is fixed Katja Luther
04:34 PM feature request #9700: Improve symbols for flags in use for term trees in term tree editor: AK: ...
ZU den Icons unten:
![](picture345-1.png)
das zweite das hier für "order relevant" vorgeschlagen ist, be... Andreas Müller
04:15 PM feature request #9700 (New): Improve symbols for flags in use for term trees in term tree editor: copied from #9288 Andreas Müller
04:31 PM bug #9701 (Closed): Order and display of different typifications for one name in one reference: Correct: When a type specimen editor entry has a holotype and isotypes, the display and order is correct in Vaadin.
... Wolf-Henning Kusber
04:21 PM feature request #9572 (Closed): After creating a new term tree set the focus to the new tree: This works now as expected. Andreas Müller
04:20 PM feature request #9288 (Closed): Add symbols for flags in use for term trees in term tree editor: "is flat" is now implemented. Move open issues for "allow duplicates" and "order relevant" to follow up ticket #9700 Andreas Müller
04:15 PM feature request #9699 (New): Make type editors available, when a published record is unlocked: If a type of a published registration has errors, this can be corrected by unlocking the record.
Problem: When a t... Wolf-Henning Kusber
04:13 PM feature request #9337 (Closed): Open issues for reimplementation of termtree editors: Issues related to notes 60 and 67 work as expected now.
Issue related to 64 needs further investigation and theref... Andreas Müller
12:11 PM feature request #9337 (Resolved): Open issues for reimplementation of termtree editors: Andreas Müller
12:09 PM feature request #9337: Open issues for reimplementation of termtree editors: Katja Luther wrote:
> #61 is not fully solved I think but I will check this again.
You are right, this is not yet... Andreas Müller
12:15 PM bug #9668 (In Progress): Secundum reference is switched when swap synonym and accepted taxon: Andreas Müller

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