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From 07/07/2021 to 08/05/2021

08/05/2021

11:52 AM bug #9734 (Closed): Correct handling for secundum references when moving taxon to new parent
For the move of a synonym to a taxon and a taxon to a synonym we already implemented the handling of secundum referen... Katja Luther
11:39 AM bug #9733 (Closed): Removed facts still in factual data view
Katja Luther
11:39 AM bug #9733 (Closed): Removed facts still in factual data view
After call delete of a fact, the fact is still displayed in factual data view. Katja Luther

08/04/2021

02:26 PM Revision 8c0f3e15 (cdm-dataportal): Merge tag '5.26.1' into develop
version 5.26.1 Andreas Kohlbecker
02:25 PM Revision 819d3324 (cdm-dataportal): Merge branch 'hotfix/5.26.1'
Andreas Kohlbecker
02:25 PM Revision cf21ac75 (cdm-dataportal): fix #9731 fixing incorrect merging of arrays - correct changeset this time
Andreas Kohlbecker
02:22 PM Revision 90e36873 (cdm-dataportal): fix #9731 fixing incorrect merging of arrays - correct changeset this time
Andreas Kohlbecker
10:50 AM bug #9732 (In Progress): Open issues in specimen tree editor
mail WB:
• Ist der Suchfilter „Unknown unit Type“ = „All unit types“? Dann wäre das ein deutlicheres Label.
• Im ...
Katja Luther

08/03/2021

04:13 PM Revision 46f6043b (cdm-server): Merge branch 'release/5.26.0' into develop
jenkins
04:12 PM Revision de20d041 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
04:12 PM Revision 119709f9 (cdm-server): updating poms for branch'release/5.26.0' with non-snapshot versions
jenkins
04:11 PM Revision caf56e10 (cdm-webapp): Merge branch 'release/5.26.0' into develop
jenkins
04:11 PM Revision d7e88464 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
04:11 PM Revision 247b87d3 (cdm-webapp): updating poms for branch'release/5.26.0' with non-snapshot versions
jenkins
04:11 PM Revision 9a2d4abd (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.26.0
jenkins
04:10 PM Revision 9617ada3 (cdm-vaadin): Merge branch 'release/5.26.0' into develop
jenkins
04:10 PM Revision c9f51613 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
04:10 PM Revision fef91d17 (taxeditor): Merge branch 'release/5.26.0' into develop
jenkins
04:10 PM Revision 71014bfc (taxeditor): Merge branch 'release/5.26.0'
jenkins
04:07 PM Revision 4c612be4 (cdm-dataportal): Merge branch 'release/5.26.0' into develop
jenkins
04:07 PM Revision fc092e23 (cdm-dataportal): updating poms for branch'release/5.26.0' with non-snapshot versions
jenkins
04:07 PM Revision e6205714 (cdm-dataportal): release-preparation: production level css
jenkins
04:07 PM Revision 94a9da0f (cdm-vaadin): updating poms for branch'release/5.26.0' with non-snapshot versions
jenkins
04:07 PM Revision 95564a5b (cdm-vaadin): jenkins bumping cdmlib.version to 5.26.0
jenkins
04:06 PM Revision eb0c1b16 (cdmlib): Updating develop poms back to pre merge state
jenkins
04:06 PM Revision 9a57a27e (cdmlib): Merge branch 'master' into develop
jenkins
04:06 PM Revision d890e12a (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
04:06 PM Revision 404d9a45 (cdmlib): Merge branch 'release/5.26.0'
jenkins
03:49 PM Revision 2a4d0084 (cdmlib): updating poms for branch'release/5.26.0' with non-snapshot versions
jenkins
03:45 PM feature request #9197: Handle caucasus conspectus data in E+M and caucasus portal
1.) Priority: show the areas in detailed map in the Caucasus Portal. The aggregation to Euro+Med is second priority, ... Eckhard von Raab-Straube
03:11 PM Revision 1300b191 (cdmlib): Updating develop poms back to pre merge state
jenkins
03:11 PM Revision dca365fa (cdmlib): Merge branch 'master' into develop
jenkins
03:11 PM Revision a242a90b (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:11 PM Revision 8628712f (cdmlib): Merge branch 'release/5.26.0'
jenkins
02:54 PM Revision 9d4e2d1b (cdmlib): updating poms for branch'release/5.26.0' with non-snapshot versions
jenkins
02:49 PM Revision 9e2c1431 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.26.0-SNAPSHOT
jenkins
02:49 PM Revision a7dea06b (cdm-webapp): updating poms for 5.27.0-SNAPSHOT development
jenkins
02:49 PM Revision f7bc3fcb (cdm-webapp): updating poms for 5.26.0 branch with snapshot versions
jenkins
02:49 PM Revision 22bb5a69 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.27.0-SNAPSHOT
jenkins
02:47 PM Revision f90a28c9 (cdm-vaadin): jenkins bumping cdmlib.version to 5.26.0-SNAPSHOT
jenkins
02:47 PM Revision 691bcda8 (taxeditor): Updated version in pom / project files to taxeditor version : 5.27.0-SNAPSHOT and cdmlib version : 5.27.0-SNAPSHOT
jenkins
02:47 PM Revision 13ea1045 (cdm-vaadin): updating poms for 5.27.0-SNAPSHOT development
jenkins
02:47 PM Revision b29f7008 (cdm-vaadin): updating poms for 5.26.0 branch with snapshot versions
jenkins
02:47 PM Revision 7d4107a0 (taxeditor): Updated version in pom / project files to taxeditor version : 5.26.0 and cdmlib version : 5.26.0
jenkins
02:47 PM Revision 061f2886 (cdm-vaadin): jenkins bumping cdmlib.version to 5.27.0-SNAPSHOT
jenkins
02:47 PM Revision c0f78315 (cdm-server): updating poms for 5.27.0-SNAPSHOT development
jenkins
02:46 PM Revision 2e4b21b3 (cdm-dataportal): updating poms for 5.27.0-SNAPSHOT development
jenkins
02:43 PM Revision 20b025be (cdmlib): updating poms for 5.27.0-SNAPSHOT development
jenkins
12:05 PM bug #9731 (Closed): error when showing to type specimens with same type status
Andreas Kohlbecker
12:05 PM bug #9731 (Resolved): error when showing to type specimens with same type status
Applied in changeset commit:cdm-dataportal|fab5713fd2ead63f7f565275327cef96af93d8c8. Andreas Kohlbecker
12:02 PM bug #9731 (Closed): error when showing to type specimens with same type status
Fails: https://www.phycobank.org/cdm_dataportal/registration?identifier=http://phycobank.org/102822
errors:
~...
Andreas Kohlbecker
12:05 PM Revision fab5713f (cdm-dataportal): fix #9731 fixing incorrect merging of arrays
Andreas Kohlbecker
11:46 AM Revision 1a9bbd58 (taxeditor): remove deleted fact from factual data view
Katja Luther
09:43 AM bug #9730 (Resolved): Open URL Button is disabled for persisted data
this should be fixed, please review. Katja Luther

08/02/2021

08:34 PM Revision f81a5027 (taxeditor): ref #9730: fix enable/disable implementation of open button
Katja Luther
07:14 PM bug #9730 (Closed): Open URL Button is disabled for persisted data
mail Vanessa:
Hallo,
ich habe nach dem Herunterladen und Installieren der neuesten Updates folgendes Problem:
Di...
Katja Luther
05:54 PM feature request #7251 (Closed): Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator
as far as I can see by now, the current implementation is fully sufficient. I will open a new ticket as far as there ... Andreas Kohlbecker
05:15 PM bug #9263 (Feedback): Unify case for type designation status
Mir ist nicht klar was ich hier machen soll. Die im Kommentar 3 erwähnten FIXMEs sind alle gelöst.
Kann dieses Tic...
Andreas Kohlbecker
04:11 PM bug #9729 (In Progress): Incomplete bean property Team.nomenclaturalTitleCache
completeness of the the bean property has been fixed by cdmlib:135329fc
However, there are now redundant setters f...
Andreas Kohlbecker
03:01 PM feature request #8028 (Closed): Better representation of web app media in the image gallery
I think the solution to this issue is sufficient by now. Once we decided for an alternative solution we can create a ... Andreas Kohlbecker
02:57 PM bug #9714 (Closed): cdm-light export: NotSerializableException when starting export via http invoker
Andreas Kohlbecker
02:48 PM bug #9721 (Closed): Specimen Table: wrong labels of specimen scans
Andreas Kohlbecker
02:45 PM bug #9728 (Closed): NoSuchMethodException Team.areNomenclaturalTitle() breaks authortem editors
Andreas Kohlbecker
02:13 PM bug #3240 (Duplicate): media/{uuid}/metadata service fails with some metadata
confirming that the issue is solved: http://test.e-taxonomy.eu/cdmserver/palmae/media/c3ab3ef1-7983-4ca3-afdf-c4476fd... Andreas Kohlbecker

07/30/2021

04:48 PM Revision d35eb644 (cdm-server): modify pom for preprelease
Andreas Kohlbecker
02:32 PM Revision 1810fb30 (cdm-vaadin): fix #9728 updating field binding to renamed bean property Team.nomenclaturalTitleCache
Andreas Kohlbecker
02:31 PM bug #9728 (Resolved): NoSuchMethodException Team.areNomenclaturalTitle() breaks authortem editors
Applied in changeset commit:cdmlib|135329fcb6fdfd546e6743cbdbf4c23aebb4dbfb. Andreas Kohlbecker
11:46 AM bug #9728 (Closed): NoSuchMethodException Team.areNomenclaturalTitle() breaks authortem editors

~~~
java.lang.NoSuchMethodException: eu.etaxonomy.cdm.model.agent.Team.areNomenclaturalTitle()
at java.lang.Cl...
Andreas Kohlbecker
02:31 PM Revision 135329fc (cdmlib): fix #9728 completing bean property Team.nomenclaturalTitleCache
Andreas Kohlbecker
02:00 PM bug #9729 (Closed): Incomplete bean property Team.nomenclaturalTitleCache
after solving #9664 the INomenclaturalAuthor.nomenclaturalTitleCache bean propery is inconsistent.
The setter needs ...
Andreas Kohlbecker

07/28/2021

05:49 PM bug #9727 (New): Serversite Preferences > Factual Data > Distribution Data > Status table content lost after closing status selection dialog
![](picture641-1.png) Andreas Kohlbecker
05:16 PM bug #9726: Specimen tree editor: improved menu item lables for "Add .. > Media > ..."
personally I prefer solution **1)** in combination with using a selection dialog that allows creating new media entit... Andreas Kohlbecker
05:15 PM bug #9726 (New): Specimen tree editor: improved menu item lables for "Add .. > Media > ..."
![](picture499-1.png)
The label "*Existing Media*" can be irritating since it seems as if in this case no "*Media ...
Andreas Kohlbecker

07/27/2021

05:40 PM bug #9723: Specimen tree editor: Function of "Link with taxon selection" in context menu unclear
Now I found out that I was mislead by the label "Link with taxon selection". The actual function is that the editor f... Andreas Kohlbecker
04:50 PM bug #9723 (Duplicate): Specimen tree editor: Function of "Link with taxon selection" in context menu unclear
See:
![](picture798-1.png)
Andreas Kohlbecker
05:31 PM bug #9725 (New): Specimen tree editor: "Link with taxon selection" fails
* even if a taxon is selected in the navigator the "Link with taxon selection" fails with "no taxon selected"
* The ...
Andreas Kohlbecker
05:20 PM bug #9724 (New): Specimen tree editor: Dirty editor can not be saved via main menu

![](picture670-1.png)
Andreas Kohlbecker

07/26/2021

04:41 PM Revision 2fe2600b (cdmlib): updating ide jetty launcher
Andreas Kohlbecker
04:34 PM Revision 8ec609a4 (cdm-dataportal): avoiding empty titles with dangling footnote key in media gallery
Andreas Kohlbecker
03:44 PM Revision e69d6355 (cdm-dataportal): proper setting and reverting of all kinds of drupal variables
Andreas Kohlbecker

07/22/2021

05:14 PM bug #3240 (Resolved): media/{uuid}/metadata service fails with some metadata
might have been fixed by #9715 Andreas Kohlbecker
05:12 PM bug #9722 (Closed): invalid response serialization of media/{uuid}/metadata.json
Andreas Kohlbecker
05:07 PM bug #9722 (Resolved): invalid response serialization of media/{uuid}/metadata.json
Applied in changeset commit:cdmlib|f208f9a2c7df426ed29a02d709db8d3663e3f33d. Andreas Kohlbecker
03:08 PM bug #9722 (Closed): invalid response serialization of media/{uuid}/metadata.json
The response of http://localhost:8080/media/1c2e6e70-c000-4cef-b4e1-31484bae027f/metadata.json?applyFilterPreset=fals... Andreas Kohlbecker
05:07 PM Revision f208f9a2 (cdmlib): fix #9722 serialization of response by jackson
Andreas Kohlbecker
04:42 PM Revision 4c4cfc1c (cdm-dataportal): ref #9715 controlling fieldUnit short label setting in test via drush
Andreas Kohlbecker
04:40 PM Revision 62ad4742 (cdm-dataportal): DrushExecuter supports json variables
Andreas Kohlbecker
02:38 PM Revision b0c0af54 (cdm-dataportal): adapting test assertions to
- new data
- short field unit labels
Andreas Kohlbecker
01:54 PM feature request #9548: Handle links to websites, webapps or similar in image galleries (simple and UV)
moving details on simple image gallery to #8028 Andreas Kohlbecker
01:44 PM Revision 7d861f5c (cdm-dataportal): ref #9721 adapting test assertions
Andreas Kohlbecker
01:44 PM Revision 80b55fda (cdmlib): ref #9721 individual labels for specimen scans - acc num + media title
Andreas Kohlbecker
12:09 PM bug #9721 (Resolved): Specimen Table: wrong labels of specimen scans
Applied in changeset commit:cdmlib|2de4677ebf72158a33a70d87e9794feb5f1269d1. Andreas Kohlbecker
12:05 PM bug #9721: Specimen Table: wrong labels of specimen scans
This is caused by the `DerivationTreeSummaryDTO` which composes identical labels for multiple scans of the same speci... Andreas Kohlbecker
11:51 AM bug #9721 (Closed): Specimen Table: wrong labels of specimen scans

This problem becomes apparent for specimens with multiple scans
http://int.e-taxonomy.eu/dataportal/integration/...
Andreas Kohlbecker
12:09 PM Revision 2de4677e (cdmlib): fix #9721 individual labels for specimen scans
Andreas Kohlbecker
11:20 AM Revision 88ed5ecf (cdm-dataportal): fixing problem with getting media caption texts in galleries
Andreas Kohlbecker
10:36 AM Revision d8f8977e (cdm-dataportal): better testing for loaded aha content
Andreas Kohlbecker
08:27 AM Revision 87c2b8f1 (cdm-dataportal): code cleaning
Andreas Kohlbecker
08:15 AM task #9720 (New): Improved layout for full range of display resolutions
Tasks:
* overcome fixed width of page area
* layout fully responsive
* support for high dpi displays
* Is the...
Andreas Kohlbecker
08:03 AM Revision bc3f1bc6 (cdm-dataportal): refactoring theme_cdm_media_mime_* fuinctions to compose_* functions - adapting assertion
Andreas Kohlbecker
07:45 AM Revision b5ab5eed (cdm-dataportal): refactoring theme_cdm_media_mime_* fuinctions to compose_* functions - bug fix
Andreas Kohlbecker

07/21/2021

06:16 PM feature request #8028: Better representation of web app media in the image gallery
I implemented a solution which is at least suitable for specimens:
![](picture156-1.png)
Andreas Kohlbecker
05:55 PM feature request #8028 (In Progress): Better representation of web app media in the image gallery
Andreas Kohlbecker
05:49 PM Revision 9f07f8ae (cdm-dataportal): ref #8028 support wor web-apps in media gallery
- refactoring procedural code to classes
- better differentiation of thumbnail-, full-size-image and web-app
Andreas Kohlbecker

07/20/2021

03:27 PM Revision efcd579e (cdm-dataportal): refactoring theme_cdm_media_mime_* fuinctions to compose_* functions - moving methods to inc files and deleting empty theme file
Andreas Kohlbecker
03:22 PM Revision ef059e70 (cdm-dataportal): refactoring theme_cdm_media_mime_* fuinctions to compose_* functions - completing switch statemens and renaming vars
Andreas Kohlbecker
03:20 PM Revision 2d6617ef (cdm-dataportal): refactoring theme_cdm_media_mime_* fuinctions to compose_* functions
Andreas Kohlbecker
03:00 PM Revision d24135df (cdm-dataportal): refactoring media gallery entry functions
Andreas Kohlbecker
01:23 PM Revision 25220cf6 (cdm-dataportal): Merge branch 'support/5.25.1' into develop
Andreas Kohlbecker
01:22 PM Revision b9643dcb (cdm-dataportal): code cleaning in media code
Andreas Kohlbecker
12:53 PM bug #9719 (Closed): maven fails with org.eclipse.aether.transfer.NoRepositoryConnectorException: Blocked mirror for repositories
Andreas Kohlbecker
11:12 AM bug #9719 (Resolved): maven fails with org.eclipse.aether.transfer.NoRepositoryConnectorException: Blocked mirror for repositories
Applied in changeset commit:cdmlib|d7747faf5e3e6998e154b6011be6ea183de0fcc3. Andreas Kohlbecker
10:50 AM bug #9719 (Closed): maven fails with org.eclipse.aether.transfer.NoRepositoryConnectorException: Blocked mirror for repositories
this happens in virgin environments on `mvn install`.
Andreas Kohlbecker
11:12 AM Revision d7747faf (cdmlib): fix #9719 https for repositoy urls
Andreas Kohlbecker
11:11 AM Revision 2a2e0635 (cdmlib): cleaning developers section in pom.xml
Andreas Kohlbecker

07/19/2021

04:28 PM feature request #9718 (New): add media source external links to IIIF item meta data
external links should be rendered as external link icon in the portal Andreas Kohlbecker
04:27 PM feature request #9717 (New): show media source external links in media gallery and media page
external links should be rendered as external link icon in the portal Andreas Kohlbecker
04:25 PM feature request #9716 (New): editing of image source external links possible in details editor
The details editor for media in advanced mode should offer fields to edit external media links:
![](picture490-1.p...
Andreas Kohlbecker
02:09 PM task #9715 (Closed): Specimen Tree View: option to choose summaryLabel or collectingString for fieldUnit label
Andreas Kohlbecker
01:53 PM task #9715 (Resolved): Specimen Tree View: option to choose summaryLabel or collectingString for fieldUnit label
Applied in changeset commit:cdm-dataportal|26166d97ed22bbe015291466a8cb55a48e98ef77. Andreas Kohlbecker
11:45 AM task #9715 (Closed): Specimen Tree View: option to choose summaryLabel or collectingString for fieldUnit label
Und die alte Frage nach der Konkatenation des Aufsammlungsstrings. In der Botanik wird eine Aufsammlung in der Regel ... Andreas Kohlbecker
01:54 PM Revision 07d37acc (cdm-dataportal): fix #9715 Option to choose summaryLabel or collectingString for fieldUnit label
Andreas Kohlbecker
01:53 PM Revision 26166d97 (cdm-dataportal): fix #9715 Option to choose summaryLabel or collectingString for fieldUnit label
Andreas Kohlbecker

07/17/2021

03:58 PM Revision 90720c06 (cdmlib): ref #9714 making CondensedDistributionConfiguration serializable
Andreas Kohlbecker
03:35 PM bug #9714 (In Progress): cdm-light export: NotSerializableException when starting export via http invoker
Andreas Kohlbecker
03:35 PM bug #9714 (Closed): cdm-light export: NotSerializableException when starting export via http invoker
ich kann den Cactaceae-Export aus Caryophyllales_spp immer noch nicht machen, bekomme sofort den untenstehenden Fehle... Andreas Kohlbecker

07/16/2021

04:59 PM bug #9713 (New): h2 database creation does not use the supplied credentials
h2 databases created via the Datasource view always have the default h2 credentials: user:sa, pwd:<empty>
The cred...
Andreas Kohlbecker
04:03 PM feature request #4021 (Feedback): H2 running in Server mode
Please can you clarify what this ticket is about?
What is expected?
Andreas Kohlbecker
02:58 PM feature request #8529: [DISCUSS]Display of aggregated descriptions
Need to have a look if these tickets for taxon default values already exist. Andreas Müller
02:58 PM feature request #8529: [DISCUSS]Display of aggregated descriptions
NK:
... es geht um die default values für höhere Taxa. Wenn das woanders schon steht, kann das ticket gelöscht werden
Andreas Müller
07:58 AM Revision 7a2e8a6e (cdmlib-apps): Add cdmlight export activator
Andreas Müller
07:54 AM Revision f54ba0df (cdmlib-apps): cleanup and add AizoaceaeIdentifierActivator
Andreas Müller

07/15/2021

06:11 PM feature request #9712 (New): Handling non image media in IIIF manifests
Media items which are no images need to be handled differently than images:
from Email conversation:
---
Im ...
Andreas Kohlbecker
05:19 PM Revision e0f57c31 (cdm-server): Merge branch 'release/5.25.0' into develop
jenkins
05:19 PM Revision f6b80f36 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
05:18 PM Revision 3c5aa1a4 (cdm-server): updating poms for branch'release/5.25.0' with non-snapshot versions
jenkins
05:05 PM Revision fc775462 (cdm-webapp): Merge branch 'release/5.25.0' into develop
jenkins
05:05 PM Revision 17d280d7 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
05:05 PM Revision a8e3c13e (cdm-webapp): updating poms for branch'release/5.25.0' with non-snapshot versions
jenkins
05:05 PM Revision 2ccd8dec (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.25.0
jenkins
05:00 PM Revision 4ecba1cb (cdmlib): move escapeSingleQuote to base class
Andreas Müller
04:58 PM Revision b9bd73dc (taxeditor): Merge branch 'release/5.25.0'
jenkins
04:56 PM Revision 6f2a761a (cdm-dataportal): Merge branch 'release/5.25.0' into develop
jenkins
04:56 PM Revision a682f268 (cdm-dataportal): updating poms for branch'release/5.25.0' with non-snapshot versions
jenkins
04:55 PM Revision ed3c3ce0 (cdm-dataportal): release-preparation: production level css
jenkins
04:55 PM Revision ed980bb1 (cdm-vaadin): Merge branch 'release/5.25.0' into develop
jenkins
04:55 PM Revision cf4e1417 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
04:51 PM Revision 3c31ee3f (cdm-vaadin): updating poms for branch'release/5.25.0' with non-snapshot versions
jenkins
04:51 PM Revision cb4f5b15 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0
jenkins
04:48 PM Revision a240d61d (cdmlib): Updating develop poms back to pre merge state
jenkins
04:48 PM Revision c241d31b (cdmlib): Merge branch 'master' into develop
jenkins
04:48 PM Revision 8d8b11b7 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
04:48 PM Revision 88b4be0f (cdmlib): Merge branch 'release/5.25.0'
jenkins
04:26 PM Revision 9218a969 (cdmlib): updating poms for branch'release/5.25.0' with non-snapshot versions
jenkins
04:13 PM Revision b457c481 (cdmlib): ref #4311 fix single quote escape in collectorTitle updater (cont.)
Andreas Müller
04:09 PM Revision ace088b8 (cdmlib): ref #4311 fix single quote escape in collectorTitle updater
Andreas Müller
04:08 PM Revision 615c3891 (cdm-dataportal): updating poms for 5.26.0-SNAPSHOT development
jenkins
03:59 PM Revision 399e6575 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.25.0-SNAPSHOT
jenkins
03:59 PM Revision 4dd8dc34 (cdm-webapp): updating poms for 5.26.0-SNAPSHOT development
jenkins
03:59 PM Revision 881e0537 (cdm-webapp): updating poms for 5.25.0 branch with snapshot versions
jenkins
03:59 PM Revision 898989ef (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.26.0-SNAPSHOT
jenkins
03:57 PM Revision 6f5798c0 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
jenkins
03:57 PM Revision c42e67cb (cdm-vaadin): updating poms for 5.26.0-SNAPSHOT development
jenkins
03:57 PM Revision 867cd471 (cdm-vaadin): updating poms for 5.25.0 branch with snapshot versions
jenkins
03:57 PM Revision 8a0c3604 (taxeditor): Updated version in pom / project files to taxeditor version : 5.26.0-SNAPSHOT and cdmlib version : 5.26.0-SNAPSHOT
jenkins
03:56 PM Revision bfaf5204 (taxeditor): Updated version in pom / project files to taxeditor version : 5.25.0 and cdmlib version : 5.25.0
jenkins
03:56 PM Revision 1bf4d0f7 (cdm-vaadin): jenkins bumping cdmlib.version to 5.26.0-SNAPSHOT
jenkins
03:56 PM Revision 8140e441 (cdm-server): updating poms for 5.26.0-SNAPSHOT development
jenkins
03:52 PM Revision 37995a53 (cdmlib): updating poms for 5.26.0-SNAPSHOT development
jenkins
03:52 PM Revision 7693ae1f (cdmlib): updating poms for 5.25.0 branch with snapshot versions
jenkins
03:23 PM Revision 315d359e (cdmlib): ref #9657 cleanup and make Partial comparator configurable for null handling
Andreas Müller
02:58 PM bug #9657 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
The above request is now ok and does no longer throw an exception.
Sort order deviation in the portal an be neglec...
Andreas Kohlbecker
02:52 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
This should be fully fixed now. Comparing partials may not throw an exception anymore. Only the order of gathering ev... Andreas Müller
01:38 PM bug #9657 (In Progress): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
Andreas Kohlbecker
01:38 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
I tested again locally the line on `OccurrenceServiceImpl$1.compare(OccurrenceServiceImpl.java:588)` has changed but ... Andreas Kohlbecker
01:14 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
Can you please test this? As we do do not have a test server for flora-malesiana-prospective I can't do this easily. Andreas Müller
12:00 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
This problem occurs due to using the compareTo method for gatheringEvent.timeperiod.start in the newly updated compar... Andreas Müller
09:48 AM bug #9657 (Feedback): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
the original exception has disappeared, but now the request portal/taxon/2debf5ee-cb57-40bc-af89-173d1d17cefe/rootUni... Andreas Kohlbecker
02:47 PM Revision 8c341841 (cdmlib): ref #9657 fully implement compare method for partials used in CDM
Andreas Müller
11:52 AM Revision 2fb46fd8 (cdmlib): ref #9657 fix gatheringDate compare for empty dates (e.g. freetext dates)
Andreas Müller
09:57 AM bug #9263: Unify case for type designation status
I put this to next current milestone as it should be reviewed soon. Please put to v5.18 once reviewed and tests adapt... Andreas Müller
09:42 AM bug #9237 (In Progress): FeatureTree SortIndex updater creates wrong sortindex
Unfortunately this does not seem to work yet. I tested with TaxEditor and the order of a feature tree changed after a... Andreas Müller
09:36 AM bug #9705 (Closed): Nomenclatural references with no title and microreference are not correctly formatted
Andreas Müller
09:25 AM task #9711 (New): Further improve matrix performance
see #9710 for why this is needed Andreas Müller
09:16 AM bug #9710 (Closed): DataIntegrityViolationException after adding a specimen to the matrix
Murat:
I come across this error message when I add a new specimen to the matrix.
Do I have to reopen the matrix w...
Andreas Müller
09:06 AM bug #9684 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon() - [UPDATE] not permitted for 'anonymousUser'
seems to be fixed completely since http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/taxon/d245083e-3bd... Andreas Kohlbecker
09:02 AM bug #9683 (Closed): Auto-initialize root bean
Andreas Kohlbecker
09:00 AM bug #7233 (Worksforme): LIE during processing of webservice request to /portal/taxon/{uuid}/taxonNodes
seems to be fixed, as this LIE is no longer reproducible with the latest code-base and a dump from the production sys... Andreas Kohlbecker
08:00 AM bug #9672 (Duplicate): NPE when CDMPreference contains allowOverride=NULL
closing as duplicate of #9673 Andreas Kohlbecker
07:53 AM task #9599 (In Progress): remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
ok, so we will modify the cdmlib-remote webservices first to make the reference with citation detail available for th... Andreas Kohlbecker
07:48 AM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descriptions inside brackets
new ticket for this: #9709 Andreas Kohlbecker
07:47 AM bug #9709 (New): remove undesired dots from synonymy entries
As discussed in #9674, there are unwanted dots trailing synonym entries, these are unwanted. Andreas Kohlbecker

07/14/2021

06:37 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
By the way, the test portal puts the note to the end while on production it is before sec which makes the situation w... Andreas Müller
06:35 PM feature request #9674 (Feedback): footnote keys for annotations to multilanguageText name descriptions inside brackets
Andreas Kohlbecker wrote:
> The dot at the end of the string needs more careful consideration as it seems if this co...
Andreas Müller
06:28 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
Andreas Kohlbecker wrote:
> The request referenced in comment 2 seems to be misplaced since i can't find this text i...
Andreas Müller
06:14 PM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descriptions inside brackets
Andreas Kohlbecker
06:13 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
This is the link to the according test-server portal page http://test.e-taxonomy.eu/dataportal/preview/caryophyllales... Andreas Kohlbecker
05:46 PM Revision b15c610a (cdm-dataportal): Revert "ref #9674 removing dot"
This reverts commit 591f74e183942f552e78098a794fc4bd20ba4824.
removing the dot raises 15 errors in the selenium test...
Andreas Kohlbecker
05:31 PM Revision 591f74e1 (cdm-dataportal): ref #9674 removing dot
Andreas Kohlbecker
05:26 PM Revision 54127ad4 (cdm-dataportal): ref #9674 triming description_element->multilanguageText
Andreas Kohlbecker
03:44 PM Revision e13687ce (taxeditor): ref #9668 fix CCE due to unordered result.getUpdatedObjects() and NPE due to missing secSources and some cleanup and javadoc
Andreas Müller
03:42 PM Revision 64924f13 (taxeditor): cleanup
Andreas Müller
02:31 PM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
this behavior should be activated when TaxonNamePopupEditorMode.NOMENCLATURALREFERENCE_SECTION_EDITING_ONLY is set in... Andreas Kohlbecker
02:19 PM bug #9708 (New): order of typedesignation in search results
this should also affect the name page
Problem: order of types is order of data entry
Solution: order should be ...
Andreas Kohlbecker
11:14 AM task #8379: Review strange specimen implementations
moving to next milestone to speed up review phase of 5.25.0 Andreas Kohlbecker

07/13/2021

03:00 PM bug #9707 (New): Update details view (almost) immediately after parsing name
AM:
ja, das ist auch an vielen anderen Stellen sehr störend, dass der Detailsview für Namen sich nach dem Parsen e...
Andreas Müller
01:57 PM Revision 9633326d (cdmlib): fix #9705 fix case with empty reference having only protected titleCache
Andreas Müller
11:44 AM feature request #9706 (Closed): Name Editor for Sections: show simple form for in-authors without full citation
When a scientific name appears in e.g. an article with authors, title, journal etc. and only this scientific name has... Wolf-Henning Kusber
10:54 AM bug #9705 (Resolved): Nomenclatural references with no title and microreference are not correctly formatted
Applied in changeset commit:cdmlib|88271645aba1610b2066edffb29b98e833bdafcc. Andreas Müller
10:44 AM bug #9705 (Closed): Nomenclatural references with no title and microreference are not correctly formatted
E.g. Catapedia Frisch & G.Thor in Jaklitsch & al., . 2016 from lichenes database. Andreas Müller
10:54 AM Revision 88271645 (cdmlib): fix #9705 remove nomRef token and fix nomRef formatting for references without title
Andreas Müller

07/12/2021

05:28 PM Revision 60ae63a1 (taxeditor): adapt CdmLightExportWizardE4 to new CdmLighExportConfigurator
Andreas Müller
05:27 PM Revision 3deaf1d3 (taxeditor): cleanup
Andreas Müller
05:18 PM Revision 86021918 (cdmlib): adapt setter for CdmLightExportConfigurator.condensedDistributionConfiguration
Andreas Müller
04:12 PM Revision 3a2731eb (cdmlib): cleanup
Andreas Müller
04:12 PM Revision 2d679a33 (cdmlib): improve logging for existing identifiers in IdentifierImport
Andreas Müller
04:11 PM Revision 0bd9c712 (cdmlib): add factory method to CdmLightExportConfigurator
Andreas Müller
04:10 PM Revision 273e1a7f (cdmlib): cleanup
Andreas Müller

07/09/2021

09:33 PM bug #9703 (Resolved): Improve handling of type designations with no status in TypeDesignationSetManager
This should be fixed and can be reviewed. Andreas Müller
03:41 PM bug #7108: supress unwanted sourcetypes in handle_annotations_and_sources()
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Works fine now and ticket can be closed.
> >
> > I only wo...
Andreas Müller
03:30 PM bug #9704 (Closed): Several issues when trying to move taxon with dialogue
When entering "*" I got the first exception.
When selecting the classification (root) as new parent I got the seco...
Andreas Müller
03:15 PM bug #9360 (Feedback): Parsed hybrids can not be persisted
Andreas Müller
03:09 PM bug #8140 (Closed): Update list of type designation status which allow an explicit source
Paralectotypes have been removed now. So I guess we can close this ticket. Andreas Müller
03:07 PM bug #8140 (Resolved): Update list of type designation status which allow an explicit source
Applied in changeset commit:cdmlib|e06767f2cf1514dc0521e5ba712e371d8f4e4de3. Andreas Müller
03:07 PM Revision e06767f2 (cdmlib): fix #8140 #note-5 removed paralectotype from list of sourcable type designation status
Andreas Müller
02:58 PM bug #9453: Implement NameDesignationBase.hasDesignationSource() which takes isRejected and isConserved into account
What exactly is meant here? Do we need an additional source field for the source saying that the type is rejected/con... Andreas Müller
02:37 PM feature request #9114: Handle malformed URIs in user type
This still needs feedback so I move to current milestone. Once it is fixed we can move to 5.19 where most of the work... Andreas Müller
02:30 PM feature request #6866 (In Progress): Improve specimen page
Looks like this is at least in progress as there are many commits.
Can we split this ticket into resolved issues a...
Andreas Müller
02:27 PM bug #7781: original spelling is missing for accepted taxon in taxon page
This is a feature users asked for frequently Andreas Müller
02:24 PM bug #8965: Separator missing for aggregated descriptions of higher character tree nodes
I guess this can be implemented fast. Andreas Müller
02:13 PM feature request #8989: Implement flowering periods (temporal facts) in dataportal
This has hight priority and should be implemented latest in next milestone (if not possible in current milestone). Andreas Müller
01:43 PM Revision 1863bfc6 (taxeditor): cleanup
Andreas Müller
01:27 PM bug #9661: Add possibility to clone a MAN
I guess this is fast to implement. Andreas Müller
01:26 PM bug #9662: CDMLight: Output should summarize all MAN with same name and err. sec
Katja, Andreas, should we think about a general formatter for homotypic groups, misapplication groups and full synony... Andreas Müller
01:07 PM bug #9688 (Closed): Make disabled fields copyable
For usernames it works as expected. Andreas Müller
01:01 PM bug #9688 (Resolved): Make disabled fields copyable
Katja Luther wrote:
> Fixed it for the Userdetails but the group name never was disabled. I can do this as well, but...
Andreas Müller
11:45 AM bug #9688: Make disabled fields copyable
Fixed it for the Userdetails but the group name never was disabled. I can do this as well, but maybe this is a little... Katja Luther
10:26 AM bug #9688 (Feedback): Make disabled fields copyable
I have to reopen this as now the Username and Group.name fields are editable again, but shouldn't. See also #8277.
...
Andreas Müller
11:40 AM feature request #8182: show blast search result
need to have a look whether this is completely fixed. Katja Luther
11:38 AM bug #9646 (Resolved): CDM Light: Add name relationship to concatenated string for homotypic group
this is fixed, last review of Walter and Nadja is needed. Katja Luther
10:11 AM bug #9646: CDM Light: Add name relationship to concatenated string for homotypic group
is this already fixed? Andreas Müller
11:33 AM Revision 4181f8aa (taxeditor): ref #9688: keep username field disabled when updating controls
Katja Luther
10:32 AM bug #9672 (Feedback): NPE when CDMPreference contains allowOverride=NULL
I think this ticket can be closed (after reducing the description), as the only open issue is handled in #9673 Andreas Müller
10:29 AM bug #8277 (Duplicate): Username (and other fields) should allow c&p
This is a duplicate for#9688 and was generally fixed there. But be aware that there is a regression for username and ... Andreas Müller
10:08 AM task #2452 (Resolved): Media entities and Webpages
Decide, how far this is open and what needs to be done. Andreas Müller
10:06 AM bug #8113 (Resolved): Update TypeDesignationStatus labels
Check if fully fixed. Move back to UML 5.5 afterwards. Andreas Müller
10:05 AM feature request #8062 (Resolved): Make default preferences deletable serverside
Check, how far this is fixed. Create open issues ticket and move this ticket back to 5.8 Andreas Müller
09:59 AM bug #7904 (Resolved): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
I guess this is solved with #9678. So the implemented solution is modification 1. The new cache strategy does not use... Andreas Müller
09:46 AM feature request #7932 (Resolved): Implement subject resolver for CdmPreferences
Needs to be reviewed and then moved back to 5.8. Open issues (also the one from note-14 should be moved to new ticket). Andreas Müller

07/08/2021

08:42 PM Revision 9a3703ac (cdmlib): fix null check
Katja Luther
08:11 PM Revision 50365e57 (cdmlib): cleanup CdmLightClassificationExport
Andreas Müller
07:19 PM Revision 7e1af4e5 (cdmlib): cleanup (cont.)
Andreas Müller
06:52 PM Revision 7b000bdc (cdmlib): cleanup
Andreas Müller
06:49 PM Revision 3733da48 (cdmlib): ref #9703 Improve handling of type designations with no status in TypeDesignationSetManager
Andreas Müller
06:46 PM bug #9703 (Resolved): Improve handling of type designations with no status in TypeDesignationSetManager
Currently they are labeled as "Nametype: " wich is obviously not (always) correct.
Generally they should not get a...
Andreas Müller
06:43 PM Revision 2bbade98 (cdmlib): cleanup
Andreas Müller
01:58 PM Revision 7818e8c8 (cdmlib): adapt cdmLight export test to synonym symbols
Katja Luther
01:34 PM bug #9702 (Closed): TypeDesignationSetManager repeats specimen string for specimens without field unit
this works as expected now. Katja Luther
12:50 PM bug #9702: TypeDesignationSetManager repeats specimen string for specimens without field unit
please review Andreas Müller
12:49 PM bug #9702 (Resolved): TypeDesignationSetManager repeats specimen string for specimens without field unit
Applied in changeset commit:cdmlib|81de71a63d3ccf4f0ecfe9ba1981b1df86bd5678. Andreas Müller
10:31 AM bug #9702 (Closed): TypeDesignationSetManager repeats specimen string for specimens without field unit
If the type specimen only has a protected titleCache the specimen string is repeated 2x.
E.g. Prionus coriatius L....
Andreas Müller
01:01 PM Revision c7ee0471 (cdmlib): fix typedesignation String with citation
Katja Luther
12:49 PM Revision 81de71a6 (cdmlib): fix #9702 handle specimen without field unit correctly in TypeDesignationSetManager
Andreas Müller
12:47 PM Revision 2d35c9d9 (cdmlib): ref #9702 add factory method for Collection
Andreas Müller
11:49 AM Revision dae62d9a (taxeditor): ref #9337: add hierarchical icon to label of term tree editor
Katja Luther
11:19 AM bug #9629 (Closed): Better handling of OptionalDataException
works as expected. Katja Luther
11:14 AM feature request #9695 (Closed): Implement a preference for supportsConcepts
looks fine Katja Luther

07/07/2021

06:09 PM bug #9237 (Resolved): FeatureTree SortIndex updater creates wrong sortindex
Applied in changeset commit:cdmlib|8be5973f6635380f96052983a1f74aa118b2db41. Andreas Müller
06:08 PM Revision 8be5973f (cdmlib): fix #9237 fix incorrect sortIndex updating (use existing sortindex, not id order)
Andreas Müller
06:06 PM Revision 57fa241c (cdmlib): cleanup
Andreas Müller
05:17 PM Revision c59b615e (cdmlib): cleanup
Andreas Müller
05:17 PM Revision 59c07ce1 (cdmlib): remove unused methods in AgentDao and AgentService (cont.)
Andreas Müller
05:06 PM Revision bf130acb (cdmlib): remove unused methods in AgentDao and AgentService
Andreas Müller
05:04 PM Revision c7ed8255 (taxeditor): cleanup
Andreas Müller
04:42 PM feature request #9680 (Closed): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
Works now as expected Andreas Müller
11:54 AM feature request #9680 (Resolved): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
this is fixed Katja Luther
04:34 PM feature request #9700: Improve symbols for flags in use for term trees in term tree editor
AK: ...
ZU den Icons unten:
![](picture345-1.png)
das zweite das hier für "order relevant" vorgeschlagen ist, be...
Andreas Müller
04:15 PM feature request #9700 (New): Improve symbols for flags in use for term trees in term tree editor
copied from #9288 Andreas Müller
04:31 PM bug #9701 (Closed): Order and display of different typifications for one name in one reference
Correct: When a type specimen editor entry has a holotype and isotypes, the display and order is correct in Vaadin.
...
Wolf-Henning Kusber
04:21 PM feature request #9572 (Closed): After creating a new term tree set the focus to the new tree
This works now as expected. Andreas Müller
04:20 PM feature request #9288 (Closed): Add symbols for flags in use for term trees in term tree editor
"is flat" is now implemented. Move open issues for "allow duplicates" and "order relevant" to follow up ticket #9700 Andreas Müller
04:15 PM feature request #9699 (New): Make type editors available, when a published record is unlocked
If a type of a published registration has errors, this can be corrected by unlocking the record.
Problem: When a t...
Wolf-Henning Kusber
04:13 PM feature request #9337 (Closed): Open issues for reimplementation of termtree editors
Issues related to notes 60 and 67 work as expected now.
Issue related to 64 needs further investigation and theref...
Andreas Müller
12:11 PM feature request #9337 (Resolved): Open issues for reimplementation of termtree editors
Andreas Müller
12:09 PM feature request #9337: Open issues for reimplementation of termtree editors
Katja Luther wrote:
> #61 is not fully solved I think but I will check this again.
You are right, this is not yet...
Andreas Müller
12:15 PM bug #9668 (In Progress): Secundum reference is switched when swap synonym and accepted taxon
Andreas Müller
 

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