Activity
From 06/27/2021 to 07/26/2021
07/26/2021
- 04:41 PM Revision 2fe2600b (cdmlib): updating ide jetty launcher
- 04:34 PM Revision 8ec609a4 (cdm-dataportal): avoiding empty titles with dangling footnote key in media gallery
- 03:44 PM Revision e69d6355 (cdm-dataportal): proper setting and reverting of all kinds of drupal variables
07/22/2021
- 05:14 PM bug #3240 (Resolved): media/{uuid}/metadata service fails with some metadata
- might have been fixed by #9715
- 05:12 PM bug #9722 (Closed): invalid response serialization of media/{uuid}/metadata.json
- 05:07 PM bug #9722 (Resolved): invalid response serialization of media/{uuid}/metadata.json
- Applied in changeset commit:cdmlib|f208f9a2c7df426ed29a02d709db8d3663e3f33d.
- 03:08 PM bug #9722 (Closed): invalid response serialization of media/{uuid}/metadata.json
- The response of http://localhost:8080/media/1c2e6e70-c000-4cef-b4e1-31484bae027f/metadata.json?applyFilterPreset=fals...
- 05:07 PM Revision f208f9a2 (cdmlib): fix #9722 serialization of response by jackson
- 04:42 PM Revision 4c4cfc1c (cdm-dataportal): ref #9715 controlling fieldUnit short label setting in test via drush
- 04:40 PM Revision 62ad4742 (cdm-dataportal): DrushExecuter supports json variables
- 02:38 PM Revision b0c0af54 (cdm-dataportal): adapting test assertions to
- - new data
- short field unit labels - 01:54 PM feature request #9548: Handle links to websites, webapps or similar in image galleries (simple and UV)
- moving details on simple image gallery to #8028
- 01:44 PM Revision 7d861f5c (cdm-dataportal): ref #9721 adapting test assertions
- 01:44 PM Revision 80b55fda (cdmlib): ref #9721 individual labels for specimen scans - acc num + media title
- 12:09 PM bug #9721 (Resolved): Specimen Table: wrong labels of specimen scans
- Applied in changeset commit:cdmlib|2de4677ebf72158a33a70d87e9794feb5f1269d1.
- 12:05 PM bug #9721: Specimen Table: wrong labels of specimen scans
- This is caused by the `DerivationTreeSummaryDTO` which composes identical labels for multiple scans of the same speci...
- 11:51 AM bug #9721 (Closed): Specimen Table: wrong labels of specimen scans
This problem becomes apparent for specimens with multiple scans
http://int.e-taxonomy.eu/dataportal/integration/...- 12:09 PM Revision 2de4677e (cdmlib): fix #9721 individual labels for specimen scans
- 11:20 AM Revision 88ed5ecf (cdm-dataportal): fixing problem with getting media caption texts in galleries
- 10:36 AM Revision d8f8977e (cdm-dataportal): better testing for loaded aha content
- 08:27 AM Revision 87c2b8f1 (cdm-dataportal): code cleaning
- 08:15 AM task #9720 (New): Improved layout for full range of display resolutions
- Tasks:
* overcome fixed width of page area
* layout fully responsive
* support for high dpi displays
* Is the... - 08:03 AM Revision bc3f1bc6 (cdm-dataportal): refactoring theme_cdm_media_mime_* fuinctions to compose_* functions - adapting assertion
- 07:45 AM Revision b5ab5eed (cdm-dataportal): refactoring theme_cdm_media_mime_* fuinctions to compose_* functions - bug fix
07/21/2021
- 06:16 PM feature request #8028: Better representation of web app media in the image gallery
- I implemented a solution which is at least suitable for specimens:
 - 05:55 PM feature request #8028 (In Progress): Better representation of web app media in the image gallery
- 05:49 PM Revision 9f07f8ae (cdm-dataportal): ref #8028 support wor web-apps in media gallery
- - refactoring procedural code to classes
- better differentiation of thumbnail-, full-size-image and web-app
07/20/2021
- 03:27 PM Revision efcd579e (cdm-dataportal): refactoring theme_cdm_media_mime_* fuinctions to compose_* functions - moving methods to inc files and deleting empty theme file
- 03:22 PM Revision ef059e70 (cdm-dataportal): refactoring theme_cdm_media_mime_* fuinctions to compose_* functions - completing switch statemens and renaming vars
- 03:20 PM Revision 2d6617ef (cdm-dataportal): refactoring theme_cdm_media_mime_* fuinctions to compose_* functions
- 03:00 PM Revision d24135df (cdm-dataportal): refactoring media gallery entry functions
- 01:23 PM Revision 25220cf6 (cdm-dataportal): Merge branch 'support/5.25.1' into develop
- 01:22 PM Revision b9643dcb (cdm-dataportal): code cleaning in media code
- 12:53 PM bug #9719 (Closed): maven fails with org.eclipse.aether.transfer.NoRepositoryConnectorException: Blocked mirror for repositories
- 11:12 AM bug #9719 (Resolved): maven fails with org.eclipse.aether.transfer.NoRepositoryConnectorException: Blocked mirror for repositories
- Applied in changeset commit:cdmlib|d7747faf5e3e6998e154b6011be6ea183de0fcc3.
- 10:50 AM bug #9719 (Closed): maven fails with org.eclipse.aether.transfer.NoRepositoryConnectorException: Blocked mirror for repositories
- this happens in virgin environments on `mvn install`.
- 11:12 AM Revision d7747faf (cdmlib): fix #9719 https for repositoy urls
- 11:11 AM Revision 2a2e0635 (cdmlib): cleaning developers section in pom.xml
07/19/2021
- 04:28 PM feature request #9718 (New): add media source external links to IIIF item meta data
- external links should be rendered as external link icon in the portal
- 04:27 PM feature request #9717 (New): show media source external links in media gallery and media page
- external links should be rendered as external link icon in the portal
- 04:25 PM feature request #9716 (New): editing of image source external links possible in details editor
- The details editor for media in advanced mode should offer fields to edit external media links:
: Specimen Tree View: option to choose summaryLabel or collectingString for fieldUnit label
- 01:53 PM task #9715 (Resolved): Specimen Tree View: option to choose summaryLabel or collectingString for fieldUnit label
- Applied in changeset commit:cdm-dataportal|26166d97ed22bbe015291466a8cb55a48e98ef77.
- 11:45 AM task #9715 (Closed): Specimen Tree View: option to choose summaryLabel or collectingString for fieldUnit label
- Und die alte Frage nach der Konkatenation des Aufsammlungsstrings. In der Botanik wird eine Aufsammlung in der Regel ...
- 01:54 PM Revision 07d37acc (cdm-dataportal): fix #9715 Option to choose summaryLabel or collectingString for fieldUnit label
- 01:53 PM Revision 26166d97 (cdm-dataportal): fix #9715 Option to choose summaryLabel or collectingString for fieldUnit label
07/17/2021
- 03:58 PM Revision 90720c06 (cdmlib): ref #9714 making CondensedDistributionConfiguration serializable
- 03:35 PM bug #9714 (In Progress): cdm-light export: NotSerializableException when starting export via http invoker
- 03:35 PM bug #9714 (Closed): cdm-light export: NotSerializableException when starting export via http invoker
- ich kann den Cactaceae-Export aus Caryophyllales_spp immer noch nicht machen, bekomme sofort den untenstehenden Fehle...
07/16/2021
- 04:59 PM bug #9713 (New): h2 database creation does not use the supplied credentials
- h2 databases created via the Datasource view always have the default h2 credentials: user:sa, pwd:<empty>
The cred... - 04:03 PM feature request #4021 (Feedback): H2 running in Server mode
- Please can you clarify what this ticket is about?
What is expected? - 02:58 PM feature request #8529: [DISCUSS]Display of aggregated descriptions
- Need to have a look if these tickets for taxon default values already exist.
- 02:58 PM feature request #8529: [DISCUSS]Display of aggregated descriptions
- NK:
... es geht um die default values für höhere Taxa. Wenn das woanders schon steht, kann das ticket gelöscht werden - 07:58 AM Revision 7a2e8a6e (cdmlib-apps): Add cdmlight export activator
- 07:54 AM Revision f54ba0df (cdmlib-apps): cleanup and add AizoaceaeIdentifierActivator
07/15/2021
- 06:11 PM feature request #9712 (New): Handling non image media in IIIF manifests
- Media items which are no images need to be handled differently than images:
from Email conversation:
---
Im ... - 05:19 PM Revision e0f57c31 (cdm-server): Merge branch 'release/5.25.0' into develop
- 05:19 PM Revision f6b80f36 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 05:18 PM Revision 3c5aa1a4 (cdm-server): updating poms for branch'release/5.25.0' with non-snapshot versions
- 05:05 PM Revision fc775462 (cdm-webapp): Merge branch 'release/5.25.0' into develop
- 05:05 PM Revision 17d280d7 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 05:05 PM Revision a8e3c13e (cdm-webapp): updating poms for branch'release/5.25.0' with non-snapshot versions
- 05:05 PM Revision 2ccd8dec (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.25.0
- 05:00 PM Revision 4ecba1cb (cdmlib): move escapeSingleQuote to base class
- 04:58 PM Revision b9bd73dc (taxeditor): Merge branch 'release/5.25.0'
- 04:56 PM Revision 6f2a761a (cdm-dataportal): Merge branch 'release/5.25.0' into develop
- 04:56 PM Revision a682f268 (cdm-dataportal): updating poms for branch'release/5.25.0' with non-snapshot versions
- 04:55 PM Revision ed3c3ce0 (cdm-dataportal): release-preparation: production level css
- 04:55 PM Revision ed980bb1 (cdm-vaadin): Merge branch 'release/5.25.0' into develop
- 04:55 PM Revision cf4e1417 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 04:51 PM Revision 3c31ee3f (cdm-vaadin): updating poms for branch'release/5.25.0' with non-snapshot versions
- 04:51 PM Revision cb4f5b15 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0
- 04:48 PM Revision a240d61d (cdmlib): Updating develop poms back to pre merge state
- 04:48 PM Revision c241d31b (cdmlib): Merge branch 'master' into develop
- 04:48 PM Revision 8d8b11b7 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 04:48 PM Revision 88b4be0f (cdmlib): Merge branch 'release/5.25.0'
- 04:26 PM Revision 9218a969 (cdmlib): updating poms for branch'release/5.25.0' with non-snapshot versions
- 04:13 PM Revision b457c481 (cdmlib): ref #4311 fix single quote escape in collectorTitle updater (cont.)
- 04:09 PM Revision ace088b8 (cdmlib): ref #4311 fix single quote escape in collectorTitle updater
- 04:08 PM Revision 615c3891 (cdm-dataportal): updating poms for 5.26.0-SNAPSHOT development
- 03:59 PM Revision 399e6575 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.25.0-SNAPSHOT
- 03:59 PM Revision 4dd8dc34 (cdm-webapp): updating poms for 5.26.0-SNAPSHOT development
- 03:59 PM Revision 881e0537 (cdm-webapp): updating poms for 5.25.0 branch with snapshot versions
- 03:59 PM Revision 898989ef (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.26.0-SNAPSHOT
- 03:57 PM Revision 6f5798c0 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
- 03:57 PM Revision c42e67cb (cdm-vaadin): updating poms for 5.26.0-SNAPSHOT development
- 03:57 PM Revision 867cd471 (cdm-vaadin): updating poms for 5.25.0 branch with snapshot versions
- 03:57 PM Revision 8a0c3604 (taxeditor): Updated version in pom / project files to taxeditor version : 5.26.0-SNAPSHOT and cdmlib version : 5.26.0-SNAPSHOT
- 03:56 PM Revision bfaf5204 (taxeditor): Updated version in pom / project files to taxeditor version : 5.25.0 and cdmlib version : 5.25.0
- 03:56 PM Revision 1bf4d0f7 (cdm-vaadin): jenkins bumping cdmlib.version to 5.26.0-SNAPSHOT
- 03:56 PM Revision 8140e441 (cdm-server): updating poms for 5.26.0-SNAPSHOT development
- 03:52 PM Revision 37995a53 (cdmlib): updating poms for 5.26.0-SNAPSHOT development
- 03:52 PM Revision 7693ae1f (cdmlib): updating poms for 5.25.0 branch with snapshot versions
- 03:23 PM Revision 315d359e (cdmlib): ref #9657 cleanup and make Partial comparator configurable for null handling
- 02:58 PM bug #9657 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- The above request is now ok and does no longer throw an exception.
Sort order deviation in the portal an be neglec... - 02:52 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- This should be fully fixed now. Comparing partials may not throw an exception anymore. Only the order of gathering ev...
- 01:38 PM bug #9657 (In Progress): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- 01:38 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- I tested again locally the line on `OccurrenceServiceImpl$1.compare(OccurrenceServiceImpl.java:588)` has changed but ...
- 01:14 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Can you please test this? As we do do not have a test server for flora-malesiana-prospective I can't do this easily.
- 12:00 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- This problem occurs due to using the compareTo method for gatheringEvent.timeperiod.start in the newly updated compar...
- 09:48 AM bug #9657 (Feedback): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- the original exception has disappeared, but now the request portal/taxon/2debf5ee-cb57-40bc-af89-173d1d17cefe/rootUni...
- 02:47 PM Revision 8c341841 (cdmlib): ref #9657 fully implement compare method for partials used in CDM
- 11:52 AM Revision 2fb46fd8 (cdmlib): ref #9657 fix gatheringDate compare for empty dates (e.g. freetext dates)
- 09:57 AM bug #9263: Unify case for type designation status
- I put this to next current milestone as it should be reviewed soon. Please put to v5.18 once reviewed and tests adapt...
- 09:42 AM bug #9237 (In Progress): FeatureTree SortIndex updater creates wrong sortindex
- Unfortunately this does not seem to work yet. I tested with TaxEditor and the order of a feature tree changed after a...
- 09:36 AM bug #9705 (Closed): Nomenclatural references with no title and microreference are not correctly formatted
- 09:25 AM task #9711 (New): Further improve matrix performance
- see #9710 for why this is needed
- 09:16 AM bug #9710 (Closed): DataIntegrityViolationException after adding a specimen to the matrix
- Murat:
I come across this error message when I add a new specimen to the matrix.
Do I have to reopen the matrix w... - 09:06 AM bug #9684 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon() - [UPDATE] not permitted for 'anonymousUser'
- seems to be fixed completely since http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/taxon/d245083e-3bd...
- 09:02 AM bug #9683 (Closed): Auto-initialize root bean
- 09:00 AM bug #7233 (Worksforme): LIE during processing of webservice request to /portal/taxon/{uuid}/taxonNodes
- seems to be fixed, as this LIE is no longer reproducible with the latest code-base and a dump from the production sys...
- 08:00 AM bug #9672 (Duplicate): NPE when CDMPreference contains allowOverride=NULL
- closing as duplicate of #9673
- 07:53 AM task #9599 (In Progress): remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
- ok, so we will modify the cdmlib-remote webservices first to make the reference with citation detail available for th...
- 07:48 AM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descriptions inside brackets
- new ticket for this: #9709
- 07:47 AM bug #9709 (New): remove undesired dots from synonymy entries
- As discussed in #9674, there are unwanted dots trailing synonym entries, these are unwanted.
07/14/2021
- 06:37 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- By the way, the test portal puts the note to the end while on production it is before sec which makes the situation w...
- 06:35 PM feature request #9674 (Feedback): footnote keys for annotations to multilanguageText name descriptions inside brackets
- Andreas Kohlbecker wrote:
> The dot at the end of the string needs more careful consideration as it seems if this co... - 06:28 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- Andreas Kohlbecker wrote:
> The request referenced in comment 2 seems to be misplaced since i can't find this text i... - 06:14 PM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descriptions inside brackets
- 06:13 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- This is the link to the according test-server portal page http://test.e-taxonomy.eu/dataportal/preview/caryophyllales...
- 05:46 PM Revision b15c610a (cdm-dataportal): Revert "ref #9674 removing dot"
- This reverts commit 591f74e183942f552e78098a794fc4bd20ba4824.
removing the dot raises 15 errors in the selenium test... - 05:31 PM Revision 591f74e1 (cdm-dataportal): ref #9674 removing dot
- 05:26 PM Revision 54127ad4 (cdm-dataportal): ref #9674 triming description_element->multilanguageText
- 03:44 PM Revision e13687ce (taxeditor): ref #9668 fix CCE due to unordered result.getUpdatedObjects() and NPE due to missing secSources and some cleanup and javadoc
- 03:42 PM Revision 64924f13 (taxeditor): cleanup
- 02:31 PM feature request #9706: Name Editor for Sections: show simple form for in-authors without full citation
- this behavior should be activated when TaxonNamePopupEditorMode.NOMENCLATURALREFERENCE_SECTION_EDITING_ONLY is set in...
- 02:19 PM bug #9708 (New): order of typedesignation in search results
- this should also affect the name page
Problem: order of types is order of data entry
Solution: order should be ... - 11:14 AM task #8379: Review strange specimen implementations
- moving to next milestone to speed up review phase of 5.25.0
07/13/2021
- 03:00 PM bug #9707 (New): Update details view (almost) immediately after parsing name
- AM:
ja, das ist auch an vielen anderen Stellen sehr störend, dass der Detailsview für Namen sich nach dem Parsen e... - 01:57 PM Revision 9633326d (cdmlib): fix #9705 fix case with empty reference having only protected titleCache
- 11:44 AM feature request #9706 (Closed): Name Editor for Sections: show simple form for in-authors without full citation
- When a scientific name appears in e.g. an article with authors, title, journal etc. and only this scientific name has...
- 10:54 AM bug #9705 (Resolved): Nomenclatural references with no title and microreference are not correctly formatted
- Applied in changeset commit:cdmlib|88271645aba1610b2066edffb29b98e833bdafcc.
- 10:44 AM bug #9705 (Closed): Nomenclatural references with no title and microreference are not correctly formatted
- E.g. Catapedia Frisch & G.Thor in Jaklitsch & al., . 2016 from lichenes database.
- 10:54 AM Revision 88271645 (cdmlib): fix #9705 remove nomRef token and fix nomRef formatting for references without title
07/12/2021
- 05:28 PM Revision 60ae63a1 (taxeditor): adapt CdmLightExportWizardE4 to new CdmLighExportConfigurator
- 05:27 PM Revision 3deaf1d3 (taxeditor): cleanup
- 05:18 PM Revision 86021918 (cdmlib): adapt setter for CdmLightExportConfigurator.condensedDistributionConfiguration
- 04:12 PM Revision 3a2731eb (cdmlib): cleanup
- 04:12 PM Revision 2d679a33 (cdmlib): improve logging for existing identifiers in IdentifierImport
- 04:11 PM Revision 0bd9c712 (cdmlib): add factory method to CdmLightExportConfigurator
- 04:10 PM Revision 273e1a7f (cdmlib): cleanup
07/09/2021
- 09:33 PM bug #9703 (Resolved): Improve handling of type designations with no status in TypeDesignationSetManager
- This should be fixed and can be reviewed.
- 03:41 PM bug #7108: supress unwanted sourcetypes in handle_annotations_and_sources()
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Works fine now and ticket can be closed.
> >
> > I only wo... - 03:30 PM bug #9704 (Closed): Several issues when trying to move taxon with dialogue
- When entering "*" I got the first exception.
When selecting the classification (root) as new parent I got the seco... - 03:15 PM bug #9360 (Feedback): Parsed hybrids can not be persisted
- 03:09 PM bug #8140 (Closed): Update list of type designation status which allow an explicit source
- Paralectotypes have been removed now. So I guess we can close this ticket.
- 03:07 PM bug #8140 (Resolved): Update list of type designation status which allow an explicit source
- Applied in changeset commit:cdmlib|e06767f2cf1514dc0521e5ba712e371d8f4e4de3.
- 03:07 PM Revision e06767f2 (cdmlib): fix #8140 #note-5 removed paralectotype from list of sourcable type designation status
- 02:58 PM bug #9453: Implement NameDesignationBase.hasDesignationSource() which takes isRejected and isConserved into account
- What exactly is meant here? Do we need an additional source field for the source saying that the type is rejected/con...
- 02:37 PM feature request #9114: Handle malformed URIs in user type
- This still needs feedback so I move to current milestone. Once it is fixed we can move to 5.19 where most of the work...
- 02:30 PM feature request #6866 (In Progress): Improve specimen page
- Looks like this is at least in progress as there are many commits.
Can we split this ticket into resolved issues a... - 02:27 PM bug #7781: original spelling is missing for accepted taxon in taxon page
- This is a feature users asked for frequently
- 02:24 PM bug #8965: Separator missing for aggregated descriptions of higher character tree nodes
- I guess this can be implemented fast.
- 02:13 PM feature request #8989: Implement flowering periods (temporal facts) in dataportal
- This has hight priority and should be implemented latest in next milestone (if not possible in current milestone).
- 01:43 PM Revision 1863bfc6 (taxeditor): cleanup
- 01:27 PM bug #9661: Add possibility to clone a MAN
- I guess this is fast to implement.
- 01:26 PM bug #9662: CDMLight: Output should summarize all MAN with same name and err. sec
- Katja, Andreas, should we think about a general formatter for homotypic groups, misapplication groups and full synony...
- 01:07 PM bug #9688 (Closed): Make disabled fields copyable
- For usernames it works as expected.
- 01:01 PM bug #9688 (Resolved): Make disabled fields copyable
- Katja Luther wrote:
> Fixed it for the Userdetails but the group name never was disabled. I can do this as well, but... - 11:45 AM bug #9688: Make disabled fields copyable
- Fixed it for the Userdetails but the group name never was disabled. I can do this as well, but maybe this is a little...
- 10:26 AM bug #9688 (Feedback): Make disabled fields copyable
- I have to reopen this as now the Username and Group.name fields are editable again, but shouldn't. See also #8277.
... - 11:40 AM feature request #8182: show blast search result
- need to have a look whether this is completely fixed.
- 11:38 AM bug #9646 (Resolved): CDM Light: Add name relationship to concatenated string for homotypic group
- this is fixed, last review of Walter and Nadja is needed.
- 10:11 AM bug #9646: CDM Light: Add name relationship to concatenated string for homotypic group
- is this already fixed?
- 11:33 AM Revision 4181f8aa (taxeditor): ref #9688: keep username field disabled when updating controls
- 10:32 AM bug #9672 (Feedback): NPE when CDMPreference contains allowOverride=NULL
- I think this ticket can be closed (after reducing the description), as the only open issue is handled in #9673
- 10:29 AM bug #8277 (Duplicate): Username (and other fields) should allow c&p
- This is a duplicate for#9688 and was generally fixed there. But be aware that there is a regression for username and ...
- 10:08 AM task #2452 (Resolved): Media entities and Webpages
- Decide, how far this is open and what needs to be done.
- 10:06 AM bug #8113 (Resolved): Update TypeDesignationStatus labels
- Check if fully fixed. Move back to UML 5.5 afterwards.
- 10:05 AM feature request #8062 (Resolved): Make default preferences deletable serverside
- Check, how far this is fixed. Create open issues ticket and move this ticket back to 5.8
- 09:59 AM bug #7904 (Resolved): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
- I guess this is solved with #9678. So the implemented solution is modification 1. The new cache strategy does not use...
- 09:46 AM feature request #7932 (Resolved): Implement subject resolver for CdmPreferences
- Needs to be reviewed and then moved back to 5.8. Open issues (also the one from note-14 should be moved to new ticket).
07/08/2021
- 08:42 PM Revision 9a3703ac (cdmlib): fix null check
- 08:11 PM Revision 50365e57 (cdmlib): cleanup CdmLightClassificationExport
- 07:19 PM Revision 7e1af4e5 (cdmlib): cleanup (cont.)
- 06:52 PM Revision 7b000bdc (cdmlib): cleanup
- 06:49 PM Revision 3733da48 (cdmlib): ref #9703 Improve handling of type designations with no status in TypeDesignationSetManager
- 06:46 PM bug #9703 (Resolved): Improve handling of type designations with no status in TypeDesignationSetManager
- Currently they are labeled as "Nametype: " wich is obviously not (always) correct.
Generally they should not get a... - 06:43 PM Revision 2bbade98 (cdmlib): cleanup
- 01:58 PM Revision 7818e8c8 (cdmlib): adapt cdmLight export test to synonym symbols
- 01:34 PM bug #9702 (Closed): TypeDesignationSetManager repeats specimen string for specimens without field unit
- this works as expected now.
- 12:50 PM bug #9702: TypeDesignationSetManager repeats specimen string for specimens without field unit
- please review
- 12:49 PM bug #9702 (Resolved): TypeDesignationSetManager repeats specimen string for specimens without field unit
- Applied in changeset commit:cdmlib|81de71a63d3ccf4f0ecfe9ba1981b1df86bd5678.
- 10:31 AM bug #9702 (Closed): TypeDesignationSetManager repeats specimen string for specimens without field unit
- If the type specimen only has a protected titleCache the specimen string is repeated 2x.
E.g. Prionus coriatius L.... - 01:01 PM Revision c7ee0471 (cdmlib): fix typedesignation String with citation
- 12:49 PM Revision 81de71a6 (cdmlib): fix #9702 handle specimen without field unit correctly in TypeDesignationSetManager
- 12:47 PM Revision 2d35c9d9 (cdmlib): ref #9702 add factory method for Collection
- 11:49 AM Revision dae62d9a (taxeditor): ref #9337: add hierarchical icon to label of term tree editor
- 11:19 AM bug #9629 (Closed): Better handling of OptionalDataException
- works as expected.
- 11:14 AM feature request #9695 (Closed): Implement a preference for supportsConcepts
- looks fine
07/07/2021
- 06:09 PM bug #9237 (Resolved): FeatureTree SortIndex updater creates wrong sortindex
- Applied in changeset commit:cdmlib|8be5973f6635380f96052983a1f74aa118b2db41.
- 06:08 PM Revision 8be5973f (cdmlib): fix #9237 fix incorrect sortIndex updating (use existing sortindex, not id order)
- 06:06 PM Revision 57fa241c (cdmlib): cleanup
- 05:17 PM Revision c59b615e (cdmlib): cleanup
- 05:17 PM Revision 59c07ce1 (cdmlib): remove unused methods in AgentDao and AgentService (cont.)
- 05:06 PM Revision bf130acb (cdmlib): remove unused methods in AgentDao and AgentService
- 05:04 PM Revision c7ed8255 (taxeditor): cleanup
- 04:42 PM feature request #9680 (Closed): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Works now as expected
- 11:54 AM feature request #9680 (Resolved): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- this is fixed
- 04:34 PM feature request #9700: Improve symbols for flags in use for term trees in term tree editor
- AK: ...
ZU den Icons unten:
das zweite das hier für "order relevant" vorgeschlagen ist, be... - 04:15 PM feature request #9700 (New): Improve symbols for flags in use for term trees in term tree editor
- copied from #9288
- 04:31 PM bug #9701 (Closed): Order and display of different typifications for one name in one reference
- Correct: When a type specimen editor entry has a holotype and isotypes, the display and order is correct in Vaadin.
... - 04:21 PM feature request #9572 (Closed): After creating a new term tree set the focus to the new tree
- This works now as expected.
- 04:20 PM feature request #9288 (Closed): Add symbols for flags in use for term trees in term tree editor
- "is flat" is now implemented. Move open issues for "allow duplicates" and "order relevant" to follow up ticket #9700
- 04:15 PM feature request #9699 (New): Make type editors available, when a published record is unlocked
- If a type of a published registration has errors, this can be corrected by unlocking the record.
Problem: When a t... - 04:13 PM feature request #9337 (Closed): Open issues for reimplementation of termtree editors
- Issues related to notes 60 and 67 work as expected now.
Issue related to 64 needs further investigation and theref... - 12:11 PM feature request #9337 (Resolved): Open issues for reimplementation of termtree editors
- 12:09 PM feature request #9337: Open issues for reimplementation of termtree editors
- Katja Luther wrote:
> #61 is not fully solved I think but I will check this again.
You are right, this is not yet... - 12:15 PM bug #9668 (In Progress): Secundum reference is switched when swap synonym and accepted taxon
07/06/2021
- 03:18 PM feature request #9337: Open issues for reimplementation of termtree editors
- Andreas Müller wrote:
> #note-67 does not fully work for me yet. The new tree seems to get the focus but immediately... - 01:16 PM feature request #9337: Open issues for reimplementation of termtree editors
- ... by the way this should be the behvior anyway and also works for tree nodes but does not seem to work for trees.
- 01:15 PM feature request #9337: Open issues for reimplementation of termtree editors
- #note-67 does not fully work for me yet. The new tree seems to get the focus but immediately looses it again. Looks l...
- 12:55 PM feature request #9337: Open issues for reimplementation of termtree editors
- Andreas Müller wrote:
> Are the other issues also fixed (#60, #61, #64, #67)
#67 is fixed, #60 is fixed
#64 is... - 12:35 PM feature request #9337 (Feedback): Open issues for reimplementation of termtree editors
- Are the other issues also fixed (#60, #61, #64, #67)
- 12:26 PM feature request #9337 (Resolved): Open issues for reimplementation of termtree editors
- Katja Luther wrote:
> Andreas Müller wrote:
> > >Add "Open in Vocabulary" to term tree editor context menu;
> >
... - 11:12 AM feature request #9337: Open issues for reimplementation of termtree editors
- Also the "Open issue" is not reproducable anymore today. There must have been some strange problem with the build yes...
- 11:09 AM feature request #9337: Open issues for reimplementation of termtree editors
- Katja Luther wrote:
> Andreas Müller wrote:
> > In the Character Editor the details view does not show data anymore... - 11:08 AM feature request #9337: Open issues for reimplementation of termtree editors
- Katja Luther wrote:
> Andreas Müller wrote:
> > > in Character Editor allow adding the new created Character at the... - 11:02 AM feature request #9337: Open issues for reimplementation of termtree editors
- Andreas Müller wrote:
> >Add "Open in Vocabulary" to term tree editor context menu;
>
> also this is not visible ... - 11:00 AM feature request #9337: Open issues for reimplementation of termtree editors
- Andreas Müller wrote:
> > in Character Editor allow adding the new created Character at the focus place, not only on... - 10:59 AM feature request #9337: Open issues for reimplementation of termtree editors
- Andreas Müller wrote:
> In the Character Editor the details view does not show data anymore. This to me seems critic... - 03:15 PM feature request #9288 (Resolved): Add symbols for flags in use for term trees in term tree editor
- added also the list symbol.
- 11:15 AM feature request #9288: Add symbols for flags in use for term trees in term tree editor
- Now, trees show a symbol but lists don't. I think either we show a symbol for both or for none of them.
- 03:02 PM Revision 030173c5 (cdmlib): cleanup
- 02:46 PM Revision 2692be07 (cdmlib): adapt generics in TeamOrPersonUuidAndTitleCache (cont. 2)
- 02:42 PM Revision e6414409 (taxeditor): ref #9337, #9680:remove set focus on titleCache and search for nomenclatural author and collector
- 02:12 PM Revision 21d98831 (taxeditor): ref #9680: show collector titlecache instead of collector title
- 02:09 PM feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- The column "collector titlecache" seems to show the collector title not the collector titleCache. At least for Person...
- 01:46 PM feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Searching for a collector (from FieldUnit details view) does also... - 01:43 PM feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Andreas Müller wrote:
> Searching for a collector (from FieldUnit details view) does also not yet give a result for ... - 01:40 PM feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Andreas Müller wrote:
> Search in bulk editor does not yet include search on collector titlecache
works now - 02:03 PM Revision ba049a9a (cdmlib): adapt generics in TeamOrPersonUuidAndTitleCache (cont.)
- 01:56 PM Revision 3f359201 (cdmlib): adapt generics in TeamOrPersonUuidAndTitleCache
- 01:56 PM Revision 841d2453 (cdmlib): cleanup
- 01:55 PM Revision c168ff52 (taxeditor): ref #9337, #9288: add image for list
- 01:51 PM Revision 786745d9 (taxeditor): ref #9337: set uuid and id not editable
- 12:58 PM bug #9629: Better handling of OptionalDataException
- This should be fixed. I tested by adding the following code to the beginning of BulkEditorUtil.openBulkEditor()
~~... - 12:54 PM bug #9629 (Resolved): Better handling of OptionalDataException
- Applied in changeset commit:taxeditor|c5a4c165774d6bf77b9927370983f7aad1cb09b3.
- 12:54 PM Revision c5a4c165 (taxeditor): fix #9629 handle OptionalDataException earlier in stack and recursive getCause()
- 12:54 PM Revision bdb4e94a (taxeditor): cleanup
- 12:29 PM Revision bb0c55f9 (taxeditor): ref #9337: correct focus when open in ... vocabulary - code cleaning
- 12:27 PM Revision 18559d5b (taxeditor): ref #9337: correct focus when open in ... vocabulary - continue
- 12:27 PM Revision 01098f79 (taxeditor): ref #9337: correct focus when open in ... vocabulary
- 11:59 AM Revision f8d675da (taxeditor): cleanup
- 11:35 AM Revision 9536f3f2 (taxeditor): ref #9629 cleanup t != null check and OptionalDataException check.
- 10:51 AM Revision ce9495ef (cdmlib): ref #9646: add unspecific non reflations
- 10:51 AM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- Before closing this ticket we need to check dataportal and cdmlight to include this relationship in the set of "non"-...
- 10:47 AM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- AM:
Was ich dafür noch bräuchte wären passende Labels für beide Richtungen. Da diese Beziehung als solches nicht v... - 10:40 AM feature request #5655 (Resolved): [DISCUSS] Do we need further "non xxx" relations?
- 10:41 AM feature request #5640 (Duplicate): [DISCUSS] Do we need a general "non" name relationship
- 10:39 AM Revision 1780aa78 (taxeditor): ref #9337: handle termnodes for open in ...
- 10:39 AM feature request #9698 (New): Make name relationship filter a DB preference
- ... similar to the nomenclatural status filter
To define the set of available name relationships for a project. So... - 10:35 AM Revision c7c43b5b (cdmlib): ref #5655, ref #5640 unspecific 'non' NameRelationshipType added
- 10:30 AM Revision c54186b7 (cdmlib): cleanup
- 08:19 AM report #7898 (Closed): using jstack on cdmserver with jsvc reports all non native threads as BLOCKED
07/05/2021
- 09:16 PM feature request #9572 (Feedback): After creating a new term tree set the focus to the new tree
- As mentioned in #9337 already, now, having the dialog, we do not need the focus setting anymore or better we should d...
- 12:33 PM feature request #9572 (Resolved): After creating a new term tree set the focus to the new tree
- Title dialog is available, please review.
- 09:05 PM feature request #9337: Open issues for reimplementation of termtree editors
- >After creating a new term tree set the focus to the new tree and in details view in title cache field
As we have ... - 08:57 PM feature request #9337: Open issues for reimplementation of termtree editors
- >Add "Open in Vocabulary" to term tree editor context menu;
also this is not visible anymore to me - 08:55 PM feature request #9337: Open issues for reimplementation of termtree editors
- > Add "Open in Referencing Objects view" to term tree editor context menu
This does not seem to work, neither in t... - 08:48 PM feature request #9337: Open issues for reimplementation of termtree editors
- sub issue #8756 to me is a critical issue. If possible we should try to fix it within this milestone.
- 08:46 PM feature request #9337: Open issues for reimplementation of termtree editors
- In the Character Editor the details view does not show data anymore. This to me seems critical as this is a place whe...
- 08:44 PM feature request #9337: Open issues for reimplementation of termtree editors
- > in Character Editor allow adding the new created Character at the focus place, not only on top
This to me still ... - 08:43 PM feature request #9337: Open issues for reimplementation of termtree editors
- > d&d from vocabulary editor to character editor not yet supported (maybe handled in #8554, #8238)
This to me seem... - 08:29 PM feature request #9337 (Feedback): Open issues for reimplementation of termtree editors
- >Show supplemental data
The UUID and Oject ID fields are now editable (or at least changeable), this seems to be a... - 08:04 PM feature request #9337: Open issues for reimplementation of termtree editors
- I moved all issues still marked as open to a new ticket #9697.
The issues marked as fixed are for review. - 12:35 PM feature request #9337 (Resolved): Open issues for reimplementation of termtree editors
- 08:03 PM feature request #9697 (New): Remaining issues for reimplementation of termtree editors
- copied from #9337
* Show supplemental data for term trees (term nodes already work #10335)
* Show term data in de... - 07:50 PM feature request #9696 (New): Implement taxon concept additional parameter for Taxon details view
- ... and show them if supportTaxonConcept (#9695) preference is set.
If easy to implement you could also implement ... - 07:44 PM feature request #9695 (Resolved): Implement a preference for supportsConcepts
- I added the predicate. Please review.
- 07:43 PM feature request #9695 (Closed): Implement a preference for supportsConcepts
- this might be a preliminary preference which makes it possible to do some development on develop branch without beaki...
- 07:44 PM Revision d1ee8032 (cdmlib): fix #9695 a predicate for supportsTaxonConcepts
- 07:34 PM report #7898: using jstack on cdmserver with jsvc reports all non native threads as BLOCKED
- This ticket is marked as resolved and 100% in Unassigned milestone. Can we fully close it and remove milestone or mov...
- 07:29 PM task #8379 (Resolved): Review strange specimen implementations
- According to note 13 this only needs a final check. So I put it on resolved in case it is fixed and only needs review.
- 07:27 PM task #8392 (Feedback): Types in PhycoBank
- 07:26 PM task #8392: Types in PhycoBank
- Wolf-Henning Kusber wrote:
> In general, gathering and type and specimen information is displayed in different more ... - 03:48 PM Revision c607b8a0 (cdmlib): cleanup
- 02:01 PM feature request #9694 (New): Validation Framework light
- Until the full validation framework is available we could implement a script that can be run against a DB which does ...
- 01:36 PM feature request #9692 (Closed): Add Operation class and link from TaxonRelationship
- 01:21 PM Revision 03b77fd8 (taxeditor): adapt test H2 to v5.25.1 in taxeditor
- 01:18 PM Revision 7fc266d2 (cdm-vaadin): adapt test H2 to v5.25.1 in vaadin
- 01:15 PM Revision 573b9e1e (cdmlib): adapt test H2 in cached model to v5.25.1 in cdmlib
- 01:15 PM Revision 3bf323a8 (cdmlib): adapt correct model schema number
- 01:15 PM Revision 6bf3734b (cdmlib): ref #9692 add operation class and link from TaxonRelationship
- 01:15 PM Revision 7aae56da (cdmlib): ref #4311 move update script for collector title to 5.25.1
- 01:15 PM Revision 6326b57d (cdmlib): add schemaversion 5.25.1
- 12:53 PM task #9693 (New): Install testing environment for mac os
- For testing the editor in a mac os environment we need a virtual box instance with mac os or a test computer.
- 11:11 AM feature request #786: Write Developers Guide for CDM Library
- I agree that we should generally close the ticket as we do not need an extensive documentation. But maybe before clos...
- 10:41 AM feature request #786 (Feedback): Write Developers Guide for CDM Library
- I guess we don't need a ticket for this. Partially it is solved already by the wiki and we are only 2.5 developers wo...
- 10:58 AM Revision 5598c832 (cdm-dataportal): ref #9685 adapting tests
- 10:43 AM Revision 863e580f (cdmlib): ref #6714 always remove ddl file before creating new one (for mvn without clean)
- 10:36 AM Revision cb027f59 (cdm-dataportal): adapting test to modified type designation short label
- 10:20 AM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- Andreas Müller wrote:
> A final minor issue. Can we use a grey which is a bit more light? Currently, at least on my ... - 10:15 AM bug #9629 (In Progress): Better handling of OptionalDataException
- 10:14 AM bug #9690 (Closed): Exception when editing name supplemental data in taxon bulk editor
- I tested it again and did not get the exception anymore, so I would close this ticket.
- 10:08 AM feature request #6929 (In Progress): handling of misapplied names without accepted name
- 10:03 AM Revision 0327830c (cdmlib): ref #9680: adapt agent search methods to fill teamOrPersonUuidAndTitlecache dto
- 10:02 AM Revision 77360286 (taxeditor): ref #9680: adapt edtior to cdmlib changes in agent searches
- 09:59 AM bug #9684 (Feedback): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon() - [UPDATE] not permitted for 'anonymousUser'
- Is this fixed by the commits? Or is there another open issue?
- 09:41 AM feature request #688 (Worksforme): Tests for AbstactBeanInitializer implemented
- Correct, the AdvancedBeanInitializerTests should be sufficient, even if I can't tell if we have 100% test coverage. N...
07/03/2021
- 12:10 AM feature request #9692 (Resolved): Add Operation class and link from TaxonRelationship
- 12:10 AM task #5244 (Closed): [DISCUSS] How should specimens be created and edited?
- Works as expected.
- 12:02 AM Revision 5ebd3071 (cdmlib): cleanup
07/02/2021
- 11:36 PM bug #7075: Excel import for images
- Also check the import mentioned in #516 for open issues (ticket was closed as it is kind of duplicate for this ticket)
- 11:35 PM bug #7075: Excel import for images
- Generally this is ready and can be closed, but we need a follow up ticket for further generic implementation for imag...
- 11:23 PM task #578: @Ignore removed from PersistentTermInitializerTest
- The test is still on ignore.
- 11:13 PM feature request #688 (Feedback): Tests for AbstactBeanInitializer implemented
- We do have tests for AdvancedBeanInitializer which is used as default now. So I don't know if we still need to implem...
- 11:10 PM feature request #694: FeatureTreeService and DescriptionElement implemented
- We do have a term tree service. But there is no DescriptionElementService yet. Needs discussion if we really need it.
- 11:06 PM feature request #718: Long term solution for saving images to taxa
- Andreas Müller wrote:
> it looks like the #700 becomes a stable solution so maybe we can close this ticket.
>
>
... - 10:59 PM bug #8202: Multiple representations exception when reusing image in image gallery
- We should check if this is still an open issue. If yes, fix it.
- 10:50 PM bug #825: DefinedTermDaoImpl - missleading method names
- This is still an open issue.
- 10:29 PM feature request #1097: Check comb. nov. with taxonomists
- Comb. nov. currently is a nomenclatural status but it needs to be discussed if this makes sense. See also related tic...
- 10:19 PM feature request #1176: OriginalSource has to support multiple OriginalNames
- There might be another ticket on this issue.
- 10:06 PM feature request #1742: Adapt the ZooNameDefaultCacheStrategy
- Is this still an open issue?
- 10:04 PM bug #1835: PALMS. Not clear format for authors and references to be parsed correctly
- Check what is still open here. (At least the alternative year parsing)
- 08:57 PM task #2346 (Rejected): [Discuss] Version Numbering for CDM Library
- I think I current version numbering works very well for us now even if we do not fully follow the suggestions in http...
- 08:49 PM feature request #2395: Create update script for type status abbreviations and for Unknown type category
- Check if this is still needed!
- 08:36 PM bug #2449 (Resolved): Some or many names have an empty fullTitleCache though information is atomized
- Check if this is fixed with #9665
- 08:32 PM bug #2448 (Feedback): Missing updated by/when (e.g. in PalmWeb)
- Maybe this is fixed with #5066.
Need to check recent data if it still happens. - 07:44 PM Revision 2dc79f92 (cdmlib): fix #2653 remove the last countAllRelationships method from persistence as it is not used and somehow against api conventions
- 07:43 PM Revision 9ed44664 (cdmlib): cleanup
- 07:33 PM task #2669 (Worksforme): Move current dataset.dtd to persistence layer and fix testListInitialization test
- This seems to be fixed as there is only 1 dataset.dtd left and it has been moved to cdmlib-test.
- 07:25 PM task #2859: TaxonNameBase.getReferenceYear does not return inRef year
- Generally this exact method does not seem to be used at all (I checked in cdmlib, vaadin and imports by call hiearchy...
- 06:33 PM bug #3933 (Duplicate): the search result list should contain bastards in alphabetical order
- I close this as duplicate for #4796
- 06:27 PM bug #3933: the search result list should contain bastards in alphabetical order
- Need to check if this is still the case. If yes, try to implement correctly.
- 06:31 PM bug #4796: Sorting of hybrids
- This is probably duplicated by #3933. See also comments there.
Test if it is still an open issue. - 06:15 PM bug #7233 (Feedback): LIE during processing of webservice request to /portal/taxon/{uuid}/taxonNodes
- Can you please check if this is still an open issue after the nomenclaturalTitle implementation has been changed now ...
- 06:10 PM task #3346 (Feedback): Team.addListenerForTeamMember(Person member) adds idle listener
- This seems to be fixed or the problem was removed in some other way.
Can you please verify, and if true, close tic... - 05:54 PM feature request #8157: Registration list view: sort registrations by the same order as in the dataportal
- "old" milestone should not be used anymore
- 05:52 PM feature request #9442: Show warning for non conformant letter case in scientific names
- "Old" milestone should not be used anymore
- 05:10 PM Revision ef165fe2 (cdmlib): cleanup
- 02:45 PM task #5244: [DISCUSS] How should specimens be created and edited?
- Hmm, I thought about it again and I think we can leave it as it is. Disabling also has disadvantages.
- 02:42 PM task #5244: [DISCUSS] How should specimens be created and edited?
- Katja Luther wrote:
> I removed the field unit from the combo box if it is anything else than a field unit and remov... - 01:42 PM task #5244 (Resolved): [DISCUSS] How should specimens be created and edited?
- I removed the field unit from the combo box if it is anything else than a field unit and removed the combo box if it ...
- 12:22 PM task #5244 (Feedback): [DISCUSS] How should specimens be created and edited?
- This ticket is fixed except for the open issue on limitation when setting the type. Can you please fix these minor is...
- 12:17 PM task #5244: [DISCUSS] How should specimens be created and edited?
- The other way round for field units the type should not be changeable at all as generally switching a field unit to a...
- 11:48 AM task #5244: [DISCUSS] How should specimens be created and edited?
- Katja Luther wrote:
> Andreas Müller wrote:
> > Open issues:
> >
> > * Calling "New" in specimen list editor fir... - 11:45 AM task #5244: [DISCUSS] How should specimens be created and edited?
- Andreas Müller wrote:
> Open issues:
>
> * Calling "New" in specimen list editor first opens single line dialogue... - 11:13 AM task #5244: [DISCUSS] How should specimens be created and edited?
- Open issues:
* Calling "New" in specimen list editor first opens single line dialogue and then opens full dialogue... - 01:54 PM Revision 40931df0 (cdmlib): ref #9599 fix taggedFullTitle test
- 01:42 PM Revision 3cc5e776 (taxeditor): #5244: remove combo of details view of the field unit
- 01:41 PM Revision bd7b4b89 (taxeditor): ref #5244: remove field unit from combo box
- 01:00 PM Revision e6685276 (cdmlib): minor
- 12:59 PM feature request #9692 (Closed): Add Operation class and link from TaxonRelationship
- The class for now can be versionable (maybe later annotatable).
Also we need an Enum for operation types (starting... - 12:53 PM task #9624 (Closed): Centralize team formatting and fix et al. position handling
- I think we can close this ticket. If there are open issues we should open new tickets.
- 12:50 PM task #9599: remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
- For having the nom ref in the tagged title you need to use the TaxonName.getTaggedFullTitle() method. This includes t...
- 12:27 PM Revision 3645336f (taxeditor): ref #7309: avoid CCE
- 12:01 PM Revision 111967be (cdmlib): ref #9678 improve titleGeneration for derived units with empty field units
- 11:57 AM Revision 6c4244e9 (taxeditor): ref #9572: add title dialog to term tree creation
- 11:45 AM Revision 472cdc2e (taxeditor): ref #5244: do not show title dialog for new specimen
- 11:03 AM bug #9688 (Closed): Make disabled fields copyable
- works as expected now.
- 10:51 AM feature request #7251 (Resolved): Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator
- This was solved with #4311 I guess. Please review.
Please also check if some implementation needs to be done for #... - 10:46 AM Revision 0017ece1 (cdmlib): adapt tests for cdmLightExport
- 10:41 AM feature request #4311 (Closed): Improve person representation in CDM
- All issues are fixed now except for those mentioned in the followup ticket.
- 10:31 AM Revision a47b46ac (cdmlib): ref #4311 improve collectorTitle update script
- 10:31 AM Revision 03a19312 (cdmlib): cleanup
- 10:31 AM Revision 8e1a14c5 (cdmlib): ref #9664, ref #4311 improve cache update for teams
- 09:56 AM Revision f85cb461 (cdmlib): adapt tests for cdmLightExport
07/01/2021
- 05:46 PM Revision 9a34ef6a (taxeditor): ref #9680: add collector titleCache to result of collector search dialog
- 05:41 PM Revision 52bb6bd1 (cdmlib): ref #9680: adapt searches to search also for collector title cache - continue
- 04:22 PM Revision 960c17a3 (taxeditor): some more enable/disable elements issues
- 04:12 PM Revision 33b4fa95 (cdmlib): ref #9646: second name of relation should be in italics, too
- 03:58 PM bug #9688: Make disabled fields copyable
- I guess this is for review.
- 02:52 PM bug #9688 (Resolved): Make disabled fields copyable
- Applied in changeset commit:taxeditor|20e64571d5a2eb538996e867b9894f04360e7f95.
- 01:34 PM bug #9688 (Feedback): Make disabled fields copyable
- Now an unprotected toggleable field can be edited. I tested with unprotected collector title of a team. But same resu...
- 12:13 PM bug #9688: Make disabled fields copyable
- This is fixed, please review.
- 12:12 PM bug #9688 (Resolved): Make disabled fields copyable
- Applied in changeset commit:taxeditor|5953dccec12018da410a14fca6d0d37c30822dc8.
- 10:32 AM bug #9688: Make disabled fields copyable
- Andreas Müller wrote:
> Copy from #9287:
>
> AM:
>
> For toggleable they still set the dirty flag (tested on P... - 10:02 AM bug #9688 (Feedback): Make disabled fields copyable
- Copy from #9287:
AM:
For toggleable they still set the dirty flag (tested on Person details view with bulk edit... - 03:56 PM bug #9634 (Closed): Update AgentBase and DescriptiveDataSet titleCache length where needed
- I did run the "find open issue" statement on edit-test and edit-integration and could not find any open issues except...
- 03:29 PM task #9679: Formatter and update script for SpecimenOrObservationBase short cache
- Once this is implemented we should add #5951 to current milestone.
- 03:28 PM task #9678 (Closed): Remove Derived- and FieldUnitFacadeCacheStrategies
- I think we can close this ticket now. Also the failing test in dataportal is fixed now (mediaspecimen are shown there...
- 03:23 PM feature request #5575 (Closed): DNA Sample requires CacheStrategy
- Not sure if this is already fully fixed but it needs to be adapted/tested anyway once we unify DnaSample with Derived...
- 03:01 PM Revision 61c33dfd (cdmlib): ref #9683 adapt method name and javadoc
- 02:57 PM bug #9683 (Feedback): Auto-initialize root bean
- I finally decided to rename the methods (in service and persistence) to loadWithoutInitializing as this is semantical...
- 02:54 PM Revision 20e64571 (taxeditor): fix #9688: Fix disabled toggleable text field
- 02:40 PM bug #9663 (Closed): Remove additional text from media title
- Works as expected and removing the file suffix is another good feature.
Only there was 1 test that was adapted in ... - 02:37 PM Revision 38d5ecb8 (cdmlib): ref #9663 adapt test to test for removing the suffix (jpg and &mo=file)
- 02:00 PM Revision c2591037 (taxeditor): ref #9690: show message when selection of bulk editor is not available - continue
- 01:59 PM Revision ccae8112 (taxeditor): ref #9690: show message when selection of bulk editor is not available
- 01:50 PM bug #9690: Exception when editing name supplemental data in taxon bulk editor
- Andreas Müller wrote:
> Now I get
>
>
> when I try to add a name identifier within the bulkeditor for taxa (b... - 01:16 PM bug #9690: Exception when editing name supplemental data in taxon bulk editor
- Except for the above exception the bug seems to be fixed now.
- 01:15 PM bug #9690 (Feedback): Exception when editing name supplemental data in taxon bulk editor
- Now I get
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/common.service
la... - 01:31 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- A final minor issue. Can we use a grey which is a bit more light? Currently, at least on my screen, it is difficult t...
- 01:24 PM feature request #7309 (Closed): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- Works as expected now
- 12:48 PM bug #9373 (Closed): In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- works as expected
- 12:33 PM Revision 257a82c2 (taxeditor): ref #9337: allow d&d from character voc -> tree and add tree image
- 12:13 PM Revision 5953dcce (taxeditor): fix #9688: Adapt toggleable text field to textWithLabel to avoid changes if disabled
- 10:01 AM feature request #9287 (Closed): Show term details in details view of term tree editor
- As there is a followup ticket for the general "copyable" issue we can close this ticket and move discussion on "copya...
- 10:00 AM feature request #9287: Show term details in details view of term tree editor
- Andreas Müller wrote:
> It works as expected for the fields in the term tree details view (which are not toggleable)... - 09:56 AM feature request #9287: Show term details in details view of term tree editor
- It works as expected for the fields in the term tree details view (which are not toggleable).
For toggleable they ... - 09:52 AM Revision a4df60bc (cdmlib): ref #9680: adapt searches to search also for collector title cache - add TeamOrPersonUuidAndTitleCache
- 09:42 AM feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Searching for a collector (from FieldUnit details view) does also not yet give a result for searching on collector ti...
- 09:33 AM feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- The search result in search dialog does not yet include the collector title cache
This is... - 09:30 AM feature request #9680 (Feedback): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Search in bulk editor does not yet include search on collector titlecache
- 09:34 AM Revision 4b96de2c (cdmlib): ref #9680: adapt searches to search also for collector title cache
06/30/2021
- 10:01 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- WGB:
Non-indications without giving the exact reason:
I would also [like] to have a simple directed name relation... - 09:52 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- Hallo,
ich dachte, ich hätte hierzu schon geschrieben, aber ich finde die Mail nicht (und im Release ist’s auch nich... - 09:14 PM bug #6468 (Worksforme): sec and sensu not correct if misapplied name relationship reference exists
- This to me seems to be fixed with the implementation on formatter for taxon relationships (misapplications and pro pa...
- 09:11 PM task #9528 (Worksforme): synonymy: missplied names sensu with short authorship string
- This to me seems to be fixed with the latest changes on short citation formatting in cdmlib.
The citation now look... - 06:21 PM bug #9691 (New): Implement aggregates correctly for zoological names
- Zoology handles aggregates different to botany as can be seen in the ICZN: https://code.iczn.org/chapter-2-the-number...
- 03:09 PM bug #9683 (Resolved): Auto-initialize root bean
- Ok, thank you for the explanation. I would prefer having the same method names in the DAP and service layer. We can k...
- 02:42 PM task #8865: more external-links to be implemented
- Now that the external links have been re-implemented new link templates can be added dynamically.
Hence the links su... - 02:22 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- Andreas Müller wrote:
> It seems to work now.
>
> However, there is another problem now. The protect button is di... - 02:20 PM bug #9373 (Resolved): In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- this is fixed, please review.
- 02:14 PM Revision 8a134bb2 (taxeditor): fix #9690: handle changes of name supplemental data in taxon bulk editor
- 02:14 PM bug #9690: Exception when editing name supplemental data in taxon bulk editor
- this should be fixed, please review.
- 02:13 PM bug #9690 (Resolved): Exception when editing name supplemental data in taxon bulk editor
- Applied in changeset commit:taxeditor|8a134bb221ba7b33eaefc95e7ce4b5e8e32cf623.
- 02:11 PM bug #9690 (Closed): Exception when editing name supplemental data in taxon bulk editor
- mail WB:
Hallo,
aus dem Taxon Bulk Editor (Taxon? – Ist eigentlich ein Synonym) – Name Suppl. Data – Eingabe WFO-... - 01:47 PM feature request #980 (Closed): Links to relevant external website(s) in taxon pages
- PubMed added to the defaults of external links, and all open tasks related to this ticket are solved now.
- 01:44 PM Revision a67bf94e (cdm-dataportal): ref #980 adding PubMed to default ext_links
- 01:43 PM Revision 9169e636 (cdm-dataportal): ref #9659 deleting old code file
- 01:27 PM task #9666 (Closed): cdm_tokens module
- test will be implemented for this module and for ext_inks commonly #9659
- 01:27 PM task #9659: External Links Module reimplemented for flexible configuration
- tests will be implemented #9659
- 01:26 PM task #9689 (New): External Links Module: Tests implemented
- These tests will also cover the cdm_tokens module.
Creating a Unit test for both modules is very complicated due t... - 01:20 PM bug #3370 (Duplicate): ExternalLinks [ext-links]: External services: GBIF: add infraspecific taxa
- has been solved by #9659, closing as duplicate
- 11:40 AM bug #9390 (In Progress): Remaining issues for set secundum dialog
- 11:04 AM bug #9688 (Resolved): Make disabled fields copyable
- please review.
- 09:59 AM bug #9688 (Closed): Make disabled fields copyable
- from #9287:
There is only one final issue which is valid for all disabled fields. Is it possible to generally make... - 11:01 AM Revision bba2caf5 (cdmlib): ref #9680:adapt seach methods to search for collectortitlecache, also for nomenclatural author search if pattern starts with *
- 11:01 AM Revision ffc9d0bd (cdmlib): ref #9680:adapt seach methods to search for collectortitlecache
- 11:01 AM Revision 44030a57 (cdmlib): smaller changes in CdmLIghtExport
- 11:01 AM feature request #9680 (Resolved): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- The Bulkeditor shows the nomenclatural title and collector title. The search is adapted for all searches. Please review.
- 10:48 AM Revision 32744832 (taxeditor): remove some not finished code
- 10:24 AM Revision edff7345 (taxeditor): ref #9680: show abbrev titlecache/protected and collector titlecache/protected in bulk editor
- 10:02 AM feature request #9287: Show term details in details view of term tree editor
- Andreas Müller wrote:
> Works as expected now and we can close the ticket.
>
> There is only one final issue whic... - 10:01 AM Revision 8fbdff7b (taxeditor): ref #9688: make disabled fields copyable
- 09:48 AM Revision ec4a9eb1 (taxeditor): ref #9287: adapt all toggleable text fields to enableCache
06/29/2021
- 11:04 PM Revision ed5871af (cdmlib): ref #4311 add initials + family default for collectorTitleCache
- 11:02 PM Revision 27d743af (cdmlib): cleanup
- 10:41 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- 10:29 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- It seems to work now.
However, there is another problem now. The protect button is disabled for all titleCache fie... - 10:30 PM feature request #9287: Show term details in details view of term tree editor
- See also #7309#note-19 which is maybe related to this ticket.
- 07:06 PM feature request #9287 (Feedback): Show term details in details view of term tree editor
- Works as expected now and we can close the ticket.
There is only one final issue which is valid for all disabled f... - 11:49 AM feature request #9287 (Resolved): Show term details in details view of term tree editor
- Andreas Müller wrote:
> The buttons for multi-language editing are still enabled. So it is possble to remove a descr... - 10:08 PM Revision f9d65b70 (cdmlib): ref #9664 , ref #4311 fix cache handling for collectorTitle and nomenclaturalTitle
- 09:30 PM Revision c1e0cb15 (cdmlib): ref #9683. ref #9664 fix tests in AgentServiceImplTest
- 09:09 PM Revision 5861cfb5 (cdmlib): ref #9664 , ref #4311 adapt autoInitializer
- 09:07 PM Revision c26ab6e0 (cdmlib): cleanup
- 06:59 PM feature request #9647 (Closed): After deduplication the remaining record should get the focus in bulk editor
- I also could not reproduce this anymore. So I think we can close this ticket and watch the deduplication in production.
- 06:50 PM task #6714 (Closed): Create 001-cdm.h2.sql automatically
- 06:41 PM task #6714 (Resolved): Create 001-cdm.h2.sql automatically
- 06:26 PM Revision ae8047fb (cdmlib): ref #6714 fix ddl creation with template
- 04:57 PM Revision 828e0012 (taxeditor): ref #9373: adapt detail elements to enable/disable possibility of toggleable text fields
- 04:06 PM Revision 6c5e41a1 (cdmlib): cleanup
- 12:46 PM feature request #9687 (New): SpecimenTypeDesignationWorkingsetEditor: Option to create new type specimen by cloning existing
- UseCase: an invalid name has type information (entered into the SpecimenTypeDesignationWorkingsetEditor in Vaadin.
... - 11:57 AM bug #9686 (New): nomenclatural status missing in
- see
https://www.phycobank.org/cdm_dataportal/registration-search/filter?identifier=&taxon_name=Encyonema+chebaling... - 11:47 AM feature request #9685: add separator between rule applied and code edition
- fixed. please review after the relase.
- 11:46 AM feature request #9685 (Resolved): add separator between rule applied and code edition
- Applied in changeset commit:cdm-dataportal|8242168c0f18d1c516cc5e328c47f9daef8c66fa.
- 11:34 AM feature request #9685 (Closed): add separator between rule applied and code edition
- https://www.phycobank.org/cdm_dataportal/registration?identifier=http://phycobank.org/102790
Art. 40.7; Turland - 11:46 AM Revision 8242168c (cdm-dataportal): fix #9685 adding semicolon as separator between rule considered and code edition
- 11:19 AM Revision 3a553a43 (taxeditor): ref #9287: fix NPE when multilanguage is disabled
- 10:23 AM Revision c9e78864 (taxeditor): ref #9287: disable translation elements of term - continue
- 10:21 AM task #9659 (Closed): External Links Module reimplemented for flexible configuration
- 10:16 AM Revision abb2570a (cdm-dataportal): ref #9659 automatically enabling cdm_tokens via update function
- 10:13 AM Revision 8ee0429a (taxeditor): ref #9287: disable translation elements of term
06/28/2021
- 05:31 PM Revision 4bafd675 (cdmlib): ref #9664 , ref #4311 fix updateCaches in Person
- 04:49 PM bug #8364 (Closed): ext-links module: problems
- done
- 04:06 PM bug #8364: ext-links module: problems
- I am unsure if we really should add a link to a specific release of CoL as CoL meanwhile has switched to an monthly r...
- 02:31 PM bug #8364 (In Progress): ext-links module: problems
- 04:48 PM Revision 4dbe55db (cdm-dataportal): ref #9659 sensibly ordering ext_links defaults and defining weight correspondingly
- 04:28 PM Revision 6f3e6f62 (cdm-dataportal): ref #8364 adding col to external links defaults
- 04:20 PM feature request #9647: After deduplication the remaining record should get the focus in bulk editor
- Andreas Müller wrote:
> This generally works as expected but in 20-30% of the cases after setting the focus it got l... - 04:16 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- 04:15 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- Andreas Müller wrote:
> >For Person the result of the collectorTitleCache field should only be displayed but not be ... - 04:15 PM Revision 9ef89740 (taxeditor): ref #7309: collector and nomenclatural title fields show cache if empty
- 04:09 PM Revision c9e207d1 (cdmlib): fix updateCaches - do not set nomenclaturalTitle but nomenclaturalTitleCache
- 03:57 PM Revision 54be0639 (cdm-dataportal): ref #8364 renaming category to 'Classification/Nomenclature' and adding wfo taxa
- 03:55 PM Revision cc1f61ef (cdmlib): ref #9664 fix test data
- 03:45 PM Revision 491f1f91 (cdmlib): ref #4311 fix collectorTitleCache handling in Team an in person2Team
- 03:43 PM Revision 1ba6c1ad (cdmlib): ref #9664 fix nomTitleCache test for fully empty person2Team
- 03:40 PM Revision 346eb1a6 (cdmlib): remove isGeneratingTitleCache which is not in use anymore
- 03:08 PM bug #9683: Auto-initialize root bean
- My comment was about the method in service. Maybe in dao it is slightly different as it is always used within a sessi...
- 03:06 PM bug #9683: Auto-initialize root bean
- Andreas Kohlbecker wrote:
> I think the new method, which by the way is only used for test classes, is irritating:
... - 02:10 PM bug #9683 (Feedback): Auto-initialize root bean
- I think the new method, which by the way is only used for test classes, is irritating:
~~~
public T loadProxy(int... - 09:39 AM bug #9683 (Resolved): Auto-initialize root bean
- Applied in changeset commit:cdmlib|5348613baa59038220d4efd1e4a851e3ccdb6c58.
- 09:35 AM bug #9683 (Closed): Auto-initialize root bean
- Currently only related objects are auto-initialized by the AbstractBean.beanAutoInitializers . The root bean itself i...
- 02:32 PM Revision 9477cfe7 (cdm-dataportal): ref #8364 adding europeana, morphbank and wfo do external links defaults
- 01:27 PM task #9659 (Resolved): External Links Module reimplemented for flexible configuration
- this should be fully solved now
- 12:16 PM Revision 322154af (cdmlib): cleanup
- 12:09 PM Revision 47125f72 (cdmlib): ref #9684 updating CdmBaseType constant names to latest model
- 12:06 PM Revision cb9f933b (cdmlib): ref #9684 adding more basetypes to CdmBaseType
- 11:29 AM bug #9684 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon() - [UPDATE] not permitted for 'anonymousUser'
e.e.c.r.controller.TaxonController - rootUnitDTOs()
/cdmserver/integration_reference/portal/taxon/d245083e-3bda...- 11:28 AM Revision bcbe5633 (cdmlib): ref #9683 add loadProxy method to services and adapt test to work with current auto initialize settings
- 11:25 AM Revision f4b956d8 (cdmlib): ref #9664 remove setting person setNomenclaturalTitle during cache update and avoid recomputing nomTitleCache and collectorTitleCache (not sure what this is needed for)
- 10:35 AM Revision b8e3fd47 (cdmlib): cleanup
- 09:43 AM task #9678 (Resolved): Remove Derived- and FieldUnitFacadeCacheStrategies
- The failing test in vaadin is related to incorrect autoinitialization (#9683) which is fixed now. So this ticket shou...
- 09:39 AM Revision 5348613b (cdmlib): fix #9683 autoinitialize root bean
- 09:38 AM Revision 3606bda3 (cdmlib): cleanup
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