Activity
From 06/06/2021 to 07/05/2021
07/05/2021
- 09:16 PM feature request #9572 (Feedback): After creating a new term tree set the focus to the new tree
- As mentioned in #9337 already, now, having the dialog, we do not need the focus setting anymore or better we should d...
- 12:33 PM feature request #9572 (Resolved): After creating a new term tree set the focus to the new tree
- Title dialog is available, please review.
- 09:05 PM feature request #9337: Open issues for reimplementation of termtree editors
- >After creating a new term tree set the focus to the new tree and in details view in title cache field
As we have ... - 08:57 PM feature request #9337: Open issues for reimplementation of termtree editors
- >Add "Open in Vocabulary" to term tree editor context menu;
also this is not visible anymore to me - 08:55 PM feature request #9337: Open issues for reimplementation of termtree editors
- > Add "Open in Referencing Objects view" to term tree editor context menu
This does not seem to work, neither in t... - 08:48 PM feature request #9337: Open issues for reimplementation of termtree editors
- sub issue #8756 to me is a critical issue. If possible we should try to fix it within this milestone.
- 08:46 PM feature request #9337: Open issues for reimplementation of termtree editors
- In the Character Editor the details view does not show data anymore. This to me seems critical as this is a place whe...
- 08:44 PM feature request #9337: Open issues for reimplementation of termtree editors
- > in Character Editor allow adding the new created Character at the focus place, not only on top
This to me still ... - 08:43 PM feature request #9337: Open issues for reimplementation of termtree editors
- > d&d from vocabulary editor to character editor not yet supported (maybe handled in #8554, #8238)
This to me seem... - 08:29 PM feature request #9337 (Feedback): Open issues for reimplementation of termtree editors
- >Show supplemental data
The UUID and Oject ID fields are now editable (or at least changeable), this seems to be a... - 08:04 PM feature request #9337: Open issues for reimplementation of termtree editors
- I moved all issues still marked as open to a new ticket #9697.
The issues marked as fixed are for review. - 12:35 PM feature request #9337 (Resolved): Open issues for reimplementation of termtree editors
- 08:03 PM feature request #9697 (New): Remaining issues for reimplementation of termtree editors
- copied from #9337
* Show supplemental data for term trees (term nodes already work #10335)
* Show term data in de... - 07:50 PM feature request #9696 (New): Implement taxon concept additional parameter for Taxon details view
- ... and show them if supportTaxonConcept (#9695) preference is set.
If easy to implement you could also implement ... - 07:44 PM feature request #9695 (Resolved): Implement a preference for supportsConcepts
- I added the predicate. Please review.
- 07:43 PM feature request #9695 (Closed): Implement a preference for supportsConcepts
- this might be a preliminary preference which makes it possible to do some development on develop branch without beaki...
- 07:34 PM report #7898: using jstack on cdmserver with jsvc reports all non native threads as BLOCKED
- This ticket is marked as resolved and 100% in Unassigned milestone. Can we fully close it and remove milestone or mov...
- 07:29 PM task #8379 (Resolved): Review strange specimen implementations
- According to note 13 this only needs a final check. So I put it on resolved in case it is fixed and only needs review.
- 07:27 PM task #8392 (Feedback): Types in PhycoBank
- 07:26 PM task #8392: Types in PhycoBank
- Wolf-Henning Kusber wrote:
> In general, gathering and type and specimen information is displayed in different more ... - 02:01 PM feature request #9694 (New): Validation Framework light
- Until the full validation framework is available we could implement a script that can be run against a DB which does ...
- 01:36 PM feature request #9692 (Closed): Add Operation class and link from TaxonRelationship
- 12:53 PM task #9693 (New): Install testing environment for mac os
- For testing the editor in a mac os environment we need a virtual box instance with mac os or a test computer.
- 11:11 AM feature request #786: Write Developers Guide for CDM Library
- I agree that we should generally close the ticket as we do not need an extensive documentation. But maybe before clos...
- 10:41 AM feature request #786 (Feedback): Write Developers Guide for CDM Library
- I guess we don't need a ticket for this. Partially it is solved already by the wiki and we are only 2.5 developers wo...
- 10:20 AM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- Andreas Müller wrote:
> A final minor issue. Can we use a grey which is a bit more light? Currently, at least on my ... - 10:15 AM bug #9629 (In Progress): Better handling of OptionalDataException
- 10:14 AM bug #9690 (Closed): Exception when editing name supplemental data in taxon bulk editor
- I tested it again and did not get the exception anymore, so I would close this ticket.
- 10:08 AM feature request #6929 (In Progress): handling of misapplied names without accepted name
- 09:59 AM bug #9684 (Feedback): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon() - [UPDATE] not permitted for 'anonymousUser'
- Is this fixed by the commits? Or is there another open issue?
- 09:41 AM feature request #688 (Worksforme): Tests for AbstactBeanInitializer implemented
- Correct, the AdvancedBeanInitializerTests should be sufficient, even if I can't tell if we have 100% test coverage. N...
07/03/2021
- 12:10 AM feature request #9692 (Resolved): Add Operation class and link from TaxonRelationship
- 12:10 AM task #5244 (Closed): [DISCUSS] How should specimens be created and edited?
- Works as expected.
07/02/2021
- 11:36 PM bug #7075: Excel import for images
- Also check the import mentioned in #516 for open issues (ticket was closed as it is kind of duplicate for this ticket)
- 11:35 PM bug #7075: Excel import for images
- Generally this is ready and can be closed, but we need a follow up ticket for further generic implementation for imag...
- 11:23 PM task #578: @Ignore removed from PersistentTermInitializerTest
- The test is still on ignore.
- 11:13 PM feature request #688 (Feedback): Tests for AbstactBeanInitializer implemented
- We do have tests for AdvancedBeanInitializer which is used as default now. So I don't know if we still need to implem...
- 11:10 PM feature request #694: FeatureTreeService and DescriptionElement implemented
- We do have a term tree service. But there is no DescriptionElementService yet. Needs discussion if we really need it.
- 11:06 PM feature request #718: Long term solution for saving images to taxa
- Andreas Müller wrote:
> it looks like the #700 becomes a stable solution so maybe we can close this ticket.
>
>
... - 10:59 PM bug #8202: Multiple representations exception when reusing image in image gallery
- We should check if this is still an open issue. If yes, fix it.
- 10:50 PM bug #825: DefinedTermDaoImpl - missleading method names
- This is still an open issue.
- 10:29 PM feature request #1097: Check comb. nov. with taxonomists
- Comb. nov. currently is a nomenclatural status but it needs to be discussed if this makes sense. See also related tic...
- 10:19 PM feature request #1176: OriginalSource has to support multiple OriginalNames
- There might be another ticket on this issue.
- 10:06 PM feature request #1742: Adapt the ZooNameDefaultCacheStrategy
- Is this still an open issue?
- 10:04 PM bug #1835: PALMS. Not clear format for authors and references to be parsed correctly
- Check what is still open here. (At least the alternative year parsing)
- 08:57 PM task #2346 (Rejected): [Discuss] Version Numbering for CDM Library
- I think I current version numbering works very well for us now even if we do not fully follow the suggestions in http...
- 08:49 PM feature request #2395: Create update script for type status abbreviations and for Unknown type category
- Check if this is still needed!
- 08:36 PM bug #2449 (Resolved): Some or many names have an empty fullTitleCache though information is atomized
- Check if this is fixed with #9665
- 08:32 PM bug #2448 (Feedback): Missing updated by/when (e.g. in PalmWeb)
- Maybe this is fixed with #5066.
Need to check recent data if it still happens. - 07:33 PM task #2669 (Worksforme): Move current dataset.dtd to persistence layer and fix testListInitialization test
- This seems to be fixed as there is only 1 dataset.dtd left and it has been moved to cdmlib-test.
- 07:25 PM task #2859: TaxonNameBase.getReferenceYear does not return inRef year
- Generally this exact method does not seem to be used at all (I checked in cdmlib, vaadin and imports by call hiearchy...
- 06:33 PM bug #3933 (Duplicate): the search result list should contain bastards in alphabetical order
- I close this as duplicate for #4796
- 06:27 PM bug #3933: the search result list should contain bastards in alphabetical order
- Need to check if this is still the case. If yes, try to implement correctly.
- 06:31 PM bug #4796: Sorting of hybrids
- This is probably duplicated by #3933. See also comments there.
Test if it is still an open issue. - 06:15 PM bug #7233 (Feedback): LIE during processing of webservice request to /portal/taxon/{uuid}/taxonNodes
- Can you please check if this is still an open issue after the nomenclaturalTitle implementation has been changed now ...
- 06:10 PM task #3346 (Feedback): Team.addListenerForTeamMember(Person member) adds idle listener
- This seems to be fixed or the problem was removed in some other way.
Can you please verify, and if true, close tic... - 05:54 PM feature request #8157: Registration list view: sort registrations by the same order as in the dataportal
- "old" milestone should not be used anymore
- 05:52 PM feature request #9442: Show warning for non conformant letter case in scientific names
- "Old" milestone should not be used anymore
- 02:45 PM task #5244: [DISCUSS] How should specimens be created and edited?
- Hmm, I thought about it again and I think we can leave it as it is. Disabling also has disadvantages.
- 02:42 PM task #5244: [DISCUSS] How should specimens be created and edited?
- Katja Luther wrote:
> I removed the field unit from the combo box if it is anything else than a field unit and remov... - 01:42 PM task #5244 (Resolved): [DISCUSS] How should specimens be created and edited?
- I removed the field unit from the combo box if it is anything else than a field unit and removed the combo box if it ...
- 12:22 PM task #5244 (Feedback): [DISCUSS] How should specimens be created and edited?
- This ticket is fixed except for the open issue on limitation when setting the type. Can you please fix these minor is...
- 12:17 PM task #5244: [DISCUSS] How should specimens be created and edited?
- The other way round for field units the type should not be changeable at all as generally switching a field unit to a...
- 11:48 AM task #5244: [DISCUSS] How should specimens be created and edited?
- Katja Luther wrote:
> Andreas Müller wrote:
> > Open issues:
> >
> > * Calling "New" in specimen list editor fir... - 11:45 AM task #5244: [DISCUSS] How should specimens be created and edited?
- Andreas Müller wrote:
> Open issues:
>
> * Calling "New" in specimen list editor first opens single line dialogue... - 11:13 AM task #5244: [DISCUSS] How should specimens be created and edited?
- Open issues:
* Calling "New" in specimen list editor first opens single line dialogue and then opens full dialogue... - 12:59 PM feature request #9692 (Closed): Add Operation class and link from TaxonRelationship
- The class for now can be versionable (maybe later annotatable).
Also we need an Enum for operation types (starting... - 12:53 PM task #9624 (Closed): Centralize team formatting and fix et al. position handling
- I think we can close this ticket. If there are open issues we should open new tickets.
- 12:50 PM task #9599: remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
- For having the nom ref in the tagged title you need to use the TaxonName.getTaggedFullTitle() method. This includes t...
- 11:03 AM bug #9688 (Closed): Make disabled fields copyable
- works as expected now.
- 10:51 AM feature request #7251 (Resolved): Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator
- This was solved with #4311 I guess. Please review.
Please also check if some implementation needs to be done for #... - 10:41 AM feature request #4311 (Closed): Improve person representation in CDM
- All issues are fixed now except for those mentioned in the followup ticket.
07/01/2021
- 03:58 PM bug #9688: Make disabled fields copyable
- I guess this is for review.
- 02:52 PM bug #9688 (Resolved): Make disabled fields copyable
- Applied in changeset commit:taxeditor|20e64571d5a2eb538996e867b9894f04360e7f95.
- 01:34 PM bug #9688 (Feedback): Make disabled fields copyable
- Now an unprotected toggleable field can be edited. I tested with unprotected collector title of a team. But same resu...
- 12:13 PM bug #9688: Make disabled fields copyable
- This is fixed, please review.
- 12:12 PM bug #9688 (Resolved): Make disabled fields copyable
- Applied in changeset commit:taxeditor|5953dccec12018da410a14fca6d0d37c30822dc8.
- 10:32 AM bug #9688: Make disabled fields copyable
- Andreas Müller wrote:
> Copy from #9287:
>
> AM:
>
> For toggleable they still set the dirty flag (tested on P... - 10:02 AM bug #9688 (Feedback): Make disabled fields copyable
- Copy from #9287:
AM:
For toggleable they still set the dirty flag (tested on Person details view with bulk edit... - 03:56 PM bug #9634 (Closed): Update AgentBase and DescriptiveDataSet titleCache length where needed
- I did run the "find open issue" statement on edit-test and edit-integration and could not find any open issues except...
- 03:29 PM task #9679: Formatter and update script for SpecimenOrObservationBase short cache
- Once this is implemented we should add #5951 to current milestone.
- 03:28 PM task #9678 (Closed): Remove Derived- and FieldUnitFacadeCacheStrategies
- I think we can close this ticket now. Also the failing test in dataportal is fixed now (mediaspecimen are shown there...
- 03:23 PM feature request #5575 (Closed): DNA Sample requires CacheStrategy
- Not sure if this is already fully fixed but it needs to be adapted/tested anyway once we unify DnaSample with Derived...
- 02:57 PM bug #9683 (Feedback): Auto-initialize root bean
- I finally decided to rename the methods (in service and persistence) to loadWithoutInitializing as this is semantical...
- 02:40 PM bug #9663 (Closed): Remove additional text from media title
- Works as expected and removing the file suffix is another good feature.
Only there was 1 test that was adapted in ... - 01:50 PM bug #9690: Exception when editing name supplemental data in taxon bulk editor
- Andreas Müller wrote:
> Now I get
>
>
> when I try to add a name identifier within the bulkeditor for taxa (b... - 01:16 PM bug #9690: Exception when editing name supplemental data in taxon bulk editor
- Except for the above exception the bug seems to be fixed now.
- 01:15 PM bug #9690 (Feedback): Exception when editing name supplemental data in taxon bulk editor
- Now I get
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/common.service
la... - 01:31 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- A final minor issue. Can we use a grey which is a bit more light? Currently, at least on my screen, it is difficult t...
- 01:24 PM feature request #7309 (Closed): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- Works as expected now
- 12:48 PM bug #9373 (Closed): In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- works as expected
- 10:01 AM feature request #9287 (Closed): Show term details in details view of term tree editor
- As there is a followup ticket for the general "copyable" issue we can close this ticket and move discussion on "copya...
- 10:00 AM feature request #9287: Show term details in details view of term tree editor
- Andreas Müller wrote:
> It works as expected for the fields in the term tree details view (which are not toggleable)... - 09:56 AM feature request #9287: Show term details in details view of term tree editor
- It works as expected for the fields in the term tree details view (which are not toggleable).
For toggleable they ... - 09:42 AM feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Searching for a collector (from FieldUnit details view) does also not yet give a result for searching on collector ti...
- 09:33 AM feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- The search result in search dialog does not yet include the collector title cache
This is... - 09:30 AM feature request #9680 (Feedback): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Search in bulk editor does not yet include search on collector titlecache
06/30/2021
- 10:01 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- WGB:
Non-indications without giving the exact reason:
I would also [like] to have a simple directed name relation... - 09:52 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- Hallo,
ich dachte, ich hätte hierzu schon geschrieben, aber ich finde die Mail nicht (und im Release ist’s auch nich... - 09:14 PM bug #6468 (Worksforme): sec and sensu not correct if misapplied name relationship reference exists
- This to me seems to be fixed with the implementation on formatter for taxon relationships (misapplications and pro pa...
- 09:11 PM task #9528 (Worksforme): synonymy: missplied names sensu with short authorship string
- This to me seems to be fixed with the latest changes on short citation formatting in cdmlib.
The citation now look... - 06:21 PM bug #9691 (New): Implement aggregates correctly for zoological names
- Zoology handles aggregates different to botany as can be seen in the ICZN: https://code.iczn.org/chapter-2-the-number...
- 03:09 PM bug #9683 (Resolved): Auto-initialize root bean
- Ok, thank you for the explanation. I would prefer having the same method names in the DAP and service layer. We can k...
- 02:42 PM task #8865: more external-links to be implemented
- Now that the external links have been re-implemented new link templates can be added dynamically.
Hence the links su... - 02:22 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- Andreas Müller wrote:
> It seems to work now.
>
> However, there is another problem now. The protect button is di... - 02:20 PM bug #9373 (Resolved): In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- this is fixed, please review.
- 02:14 PM bug #9690: Exception when editing name supplemental data in taxon bulk editor
- this should be fixed, please review.
- 02:13 PM bug #9690 (Resolved): Exception when editing name supplemental data in taxon bulk editor
- Applied in changeset commit:taxeditor|8a134bb221ba7b33eaefc95e7ce4b5e8e32cf623.
- 02:11 PM bug #9690 (Closed): Exception when editing name supplemental data in taxon bulk editor
- mail WB:
Hallo,
aus dem Taxon Bulk Editor (Taxon? – Ist eigentlich ein Synonym) – Name Suppl. Data – Eingabe WFO-... - 01:47 PM feature request #980 (Closed): Links to relevant external website(s) in taxon pages
- PubMed added to the defaults of external links, and all open tasks related to this ticket are solved now.
- 01:27 PM task #9666 (Closed): cdm_tokens module
- test will be implemented for this module and for ext_inks commonly #9659
- 01:27 PM task #9659: External Links Module reimplemented for flexible configuration
- tests will be implemented #9659
- 01:26 PM task #9689 (New): External Links Module: Tests implemented
- These tests will also cover the cdm_tokens module.
Creating a Unit test for both modules is very complicated due t... - 01:20 PM bug #3370 (Duplicate): ExternalLinks [ext-links]: External services: GBIF: add infraspecific taxa
- has been solved by #9659, closing as duplicate
- 11:40 AM bug #9390 (In Progress): Remaining issues for set secundum dialog
- 11:04 AM bug #9688 (Resolved): Make disabled fields copyable
- please review.
- 09:59 AM bug #9688 (Closed): Make disabled fields copyable
- from #9287:
There is only one final issue which is valid for all disabled fields. Is it possible to generally make... - 11:01 AM feature request #9680 (Resolved): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- The Bulkeditor shows the nomenclatural title and collector title. The search is adapted for all searches. Please review.
- 10:02 AM feature request #9287: Show term details in details view of term tree editor
- Andreas Müller wrote:
> Works as expected now and we can close the ticket.
>
> There is only one final issue whic...
06/29/2021
- 10:41 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- 10:29 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- It seems to work now.
However, there is another problem now. The protect button is disabled for all titleCache fie... - 10:30 PM feature request #9287: Show term details in details view of term tree editor
- See also #7309#note-19 which is maybe related to this ticket.
- 07:06 PM feature request #9287 (Feedback): Show term details in details view of term tree editor
- Works as expected now and we can close the ticket.
There is only one final issue which is valid for all disabled f... - 11:49 AM feature request #9287 (Resolved): Show term details in details view of term tree editor
- Andreas Müller wrote:
> The buttons for multi-language editing are still enabled. So it is possble to remove a descr... - 06:59 PM feature request #9647 (Closed): After deduplication the remaining record should get the focus in bulk editor
- I also could not reproduce this anymore. So I think we can close this ticket and watch the deduplication in production.
- 06:50 PM task #6714 (Closed): Create 001-cdm.h2.sql automatically
- 06:41 PM task #6714 (Resolved): Create 001-cdm.h2.sql automatically
- 12:46 PM feature request #9687 (New): SpecimenTypeDesignationWorkingsetEditor: Option to create new type specimen by cloning existing
- UseCase: an invalid name has type information (entered into the SpecimenTypeDesignationWorkingsetEditor in Vaadin.
... - 11:57 AM bug #9686 (New): nomenclatural status missing in
- see
https://www.phycobank.org/cdm_dataportal/registration-search/filter?identifier=&taxon_name=Encyonema+chebaling... - 11:47 AM feature request #9685: add separator between rule applied and code edition
- fixed. please review after the relase.
- 11:46 AM feature request #9685 (Resolved): add separator between rule applied and code edition
- Applied in changeset commit:cdm-dataportal|8242168c0f18d1c516cc5e328c47f9daef8c66fa.
- 11:34 AM feature request #9685 (Closed): add separator between rule applied and code edition
- https://www.phycobank.org/cdm_dataportal/registration?identifier=http://phycobank.org/102790
Art. 40.7; Turland - 10:21 AM task #9659 (Closed): External Links Module reimplemented for flexible configuration
06/28/2021
- 04:49 PM bug #8364 (Closed): ext-links module: problems
- done
- 04:06 PM bug #8364: ext-links module: problems
- I am unsure if we really should add a link to a specific release of CoL as CoL meanwhile has switched to an monthly r...
- 02:31 PM bug #8364 (In Progress): ext-links module: problems
- 04:20 PM feature request #9647: After deduplication the remaining record should get the focus in bulk editor
- Andreas Müller wrote:
> This generally works as expected but in 20-30% of the cases after setting the focus it got l... - 04:16 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- 04:15 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- Andreas Müller wrote:
> >For Person the result of the collectorTitleCache field should only be displayed but not be ... - 03:08 PM bug #9683: Auto-initialize root bean
- My comment was about the method in service. Maybe in dao it is slightly different as it is always used within a sessi...
- 03:06 PM bug #9683: Auto-initialize root bean
- Andreas Kohlbecker wrote:
> I think the new method, which by the way is only used for test classes, is irritating:
... - 02:10 PM bug #9683 (Feedback): Auto-initialize root bean
- I think the new method, which by the way is only used for test classes, is irritating:
~~~
public T loadProxy(int... - 09:39 AM bug #9683 (Resolved): Auto-initialize root bean
- Applied in changeset commit:cdmlib|5348613baa59038220d4efd1e4a851e3ccdb6c58.
- 09:35 AM bug #9683 (Closed): Auto-initialize root bean
- Currently only related objects are auto-initialized by the AbstractBean.beanAutoInitializers . The root bean itself i...
- 01:27 PM task #9659 (Resolved): External Links Module reimplemented for flexible configuration
- this should be fully solved now
- 11:29 AM bug #9684 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon() - [UPDATE] not permitted for 'anonymousUser'
e.e.c.r.controller.TaxonController - rootUnitDTOs()
/cdmserver/integration_reference/portal/taxon/d245083e-3bda...- 09:43 AM task #9678 (Resolved): Remove Derived- and FieldUnitFacadeCacheStrategies
- The failing test in vaadin is related to incorrect autoinitialization (#9683) which is fixed now. So this ticket shou...
06/25/2021
- 07:58 PM bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
- 07:44 PM feature request #9682 (New): Implement source for external authors
- via webservice to ipni or on something like CDM term server.
Good sources for (botanical) persons are:
Inde... - 07:41 PM feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
- 07:37 PM feature request #4311 (Resolved): Improve person representation in CDM
- Collector titel update script and explicit nomenclaturalTitleCache including protected have been implemented.
Open... - 07:35 PM task #9681 (New): Open issues for improving person representation
- copied from #4311
* usage of "suffix" (correct label??) in "Taxonname reference author" (discuss with NK)
* full ... - 07:08 PM bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
- Seem to work as expected (but not sure if I could reproduce it correctly)
- 07:01 PM feature request #9572 (Feedback): After creating a new term tree set the focus to the new tree
- Works as expected so we can close the ticket.
I only wonder if it can be further improved. Currently you have to d... - 06:55 PM feature request #9647 (Feedback): After deduplication the remaining record should get the focus in bulk editor
- This generally works as expected but in 20-30% of the cases after setting the focus it got lost immediately again tho...
- 06:47 PM bug #9654 (Closed): Deleting a synonym which has no name throws exception
- Works as expected
- 06:35 PM feature request #9655 (Closed): When adding a new team member open search dialogue immediately
- Works as expected. ... and saves time
- 06:32 PM bug #9373: In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- How to reproduce:
* Create a specimen with a protected titleCache
* Open specimen tree editor and search for the ... - 06:23 PM feature request #7178 (New): implement collectorTitleCache in TeamOrPersonField (vaadin)
- The collector title is now implemented and available so the according field in vaadin editor can be implemented, too.
- 06:20 PM feature request #7178: implement collectorTitleCache in TeamOrPersonField (vaadin)
- Andreas Kohlbecker wrote:
> Aber bei diesem Ticket geht es um das vaadin UI nicht um die titleCache-Generierung in d... - 06:17 PM feature request #9680 (Closed): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- ... and extend search on the collectorTitleCache field.
Also the collectorTitleCache should be included in search ... - 06:12 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- >For Person the result of the collectorTitleCache field should only be displayed but not be editable.
This still s... - 02:39 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- This should be implemented now, please review.
- 06:05 PM feature request #9287 (Feedback): Show term details in details view of term tree editor
- The buttons for multi-language editing are still enabled. So it is possble to remove a description for a given langua...
- 05:51 PM task #9678 (In Progress): Remove Derived- and FieldUnitFacadeCacheStrategies
- Mostly implemented but there is still a test in vaadin that fails due to a lazy initialization exception when calling...
- 09:52 AM task #9678 (Closed): Remove Derived- and FieldUnitFacadeCacheStrategies
- Cache strategies for FieldUnits and DerivedUnits are currently using the DerivedUnitFacadeCacheStrategy or DerivedUni...
- 10:32 AM bug #8517 (Closed): SpecimenOrObservation: data from protected titleCache missig in portal pages
- The above links work as expected so I think we can close this ticket. Please reopen if you think there is something l...
- 10:11 AM task #9679 (New): Formatter and update script for SpecimenOrObservationBase short cache
- ... or "identityCache".
Also think about deviding titleCache in titleCache and fullTitle(Cache) where only the lat...
06/22/2021
- 07:22 PM feature request #9677: Implement recombine operation
- NaK:
ja, genau, es sind Neukombinationen aufgrund neue taxonomische Erkenntnisse, oder einer phylogenetischen Stud... - 07:19 PM feature request #9677 (New): Implement recombine operation
- Currently we have only move and swap operations available for implementing a recombination of a taxon.
However, us... - 10:10 AM bug #9676: Separators in nomenclatural act representations between identifier and date
- Henning wrote:
Im Prinzip wäre es in der Ansicht, die Andreas M. gezeigt hat sinnvoll, mit Komma jeweils zu trennen. - 10:09 AM bug #9676 (New): Separators in nomenclatural act representations between identifier and date
- Würde es nicht Sinn machen, den Identifier und das Registrierungsdatum auch mit einem Separator zu versehen. Derzeit ...
06/18/2021
- 12:30 PM feature request #8238: Allow interoperability between term trees
- The interoperability should be implemented in cdmlib.
addChild() should allow to add a term that is subtype of the... - 09:27 AM feature request #9572 (Resolved): After creating a new term tree set the focus to the new tree
- Now also the focus is set to the titleCache, please review.
- 09:04 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- Discussion how to handle Secundum Reference:
mail AM:
noch eine bisschen detaillierter Überlegung zu der Secund...
06/17/2021
- 03:14 PM feature request #9572 (In Progress): After creating a new term tree set the focus to the new tree
- After creating a new tree the focus is set to this tree, the focus on titlecache is still missing.
06/16/2021
- 10:17 PM bug #9634 (Resolved): Update AgentBase and DescriptiveDataSet titleCache length where needed
- 05:33 PM task #9650 (In Progress): Update all titleCaches after upgrade of cache strategies and formatters
- 05:21 PM feature request #3444 (Feedback): Don't show empty General Tab
- Andreas Kohlbecker wrote:
> the synonymy can be placed on the general tab, so this ticket is no longer relevant
T... - 05:03 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- On the linked site above there is also an unnecessary whitespace before the closing bracket and a full stop after foo...
- 04:45 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- thanks for that hint.
- 03:45 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- >Aber das original spelling wird hier nicht mit ausgegeben: as „saglione“ – kann man das einstellen? In CDM-light kom...
- 11:07 AM feature request #9674 (Resolved): footnote keys for annotations to multilanguageText name descriptions inside brackets
- Applied in changeset commit:cdm-dataportal|c4dd76b64df4d09297b4335ac55be13e01833734.
- 10:50 AM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descriptions inside brackets
- Gymnocalycium saglionis (Cels) Britton & Rose, Cactaceae 3: 157. 1922 [Original spelling of epithet should be maintai...
- 03:34 PM bug #9675 (Closed): Person initials should never be empty
- 12:05 PM bug #9675 (Resolved): Person initials should never be empty
- Applied in changeset commit:cdmlib|5d058335ab6b9a59fe95c0becec9b4072bb6a0b4.
- 12:04 PM bug #9675 (Closed): Person initials should never be empty
- but null instead
- 11:12 AM feature request #3223 (New): data portal front end for free text search on occurrences
- Andreas Müller wrote:
> Is there a reason why you assigned the ticket to me? (dataportal front-end and freetext se... - 11:07 AM feature request #3223: data portal front end for free text search on occurrences
- Yes, I think it is a general requirement and not only for AT.
Therefore I move it to unassigned.
Is there a reaso... - 10:56 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- Andreas Müller wrote:
> Is this ticket really only about "allowOverride=NULL"? I ask because there is so much additi... - 10:53 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- Is this ticket really only about "allowOverride=NULL"? I ask because there is so much additional information in the d...
- 10:52 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- I added a ticket which should try to set the allowOverride to allowNull=false if possible (unfortunately not trival v...
- 10:48 AM bug #9672 (In Progress): NPE when CDMPreference contains allowOverride=NULL
- Allow override must never be NULL (even if the schema for historical reasons allwos null). Please adapt data in your ...
- 10:16 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- Hier ist der Stacktrace:
~~~
Caused by: java.lang.IllegalArgumentException: Can not set boolean field eu.etaxonom... - 08:35 AM bug #9672 (Duplicate): NPE when CDMPreference contains allowOverride=NULL
- eu.etaxonomy.cdm.api.service.MediaServiceImpl.readResourceMetadataFiltered(MediaRepresentation representation) throws...
- 10:51 AM feature request #9287 (Resolved): Show term details in details view of term tree editor
- this should be fixed. Please review.
- 10:50 AM task #9673 (New): Remove allowNull from allowOverride
- in CdmPreferences, if possible.
Use false (0) instead as default. - 10:40 AM feature request #9270 (Duplicate): show original spelling on taxon page
06/15/2021
- 05:06 PM bug #9669 (Closed): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- 03:02 PM bug #9669 (Resolved): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- Applied in changeset commit:cdm-dataportal|ecf46c678ce8626ebe6a945c065c76b7e8819e09.
- 03:01 PM bug #9669 (In Progress): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- 02:51 PM bug #9669 (Closed): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- ~~~
[Tue Jun 15 14:41:08.025031 2021] [php7:notice] [pid 19252] [client 127.0.0.1:53352] PHP Fatal error: Allowed m... - 04:26 PM feature request #6213: use separate tempfolder per store updater
- should be improved by using subfolders per `Store.storeName`:
pass `Store.storeName` as optional argument to `Http... - 04:13 PM bug #9671 (New): handshake_failure on polling for updates at http://eunis.eea.europa.eu/rdf/species.rdf.gz
- ~~~
javax.net.ssl.SSLHandshakeException: Received fatal alert: handshake_failure
at sun.security.ssl.Alerts... - 02:13 PM feature request #3223: data portal front end for free text search on occurrences
- This was also required in the campanula project,
As we don't have a specimen search yet, this ticket should conside... - 01:42 PM feature request #3444 (Rejected): Don't show empty General Tab
- the synonymy can be placed on the general tab, so this ticket is no longer relevant
- 01:41 PM task #3241: favicon for algaterra
- Henning, please can you decide?
- 01:14 PM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- In general I wonder if it is a good idea to stay with the new implementation of the method. The current problem shows...
- 01:09 PM bug #9668 (Feedback): Secundum reference is switched when swap synonym and accepted taxon
- I get
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxon.service
last r... - 11:01 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- The hotfix is implemented, please review with nightly.
- 10:14 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- As a workaround the secundum reference is switched in editor for a quick hotfix.
The complete implementation needs... - 09:36 AM bug #9668 (In Progress): Secundum reference is switched when swap synonym and accepted taxon
- mail NadjaK:
ich bin gerade auf eine Fehlerquelle gestoßen:
Ich habe Salmonopuntia schickendantzii als neues ...
06/12/2021
- 11:53 AM bug #9649 (Resolved): Specimens sometimes have empty titleCache instead of class<UUID>
- Set to resolved in case #9665 fixed the issue.
- 11:48 AM task #9030 (Closed): Import flowering periods for Cyprus
- Import did run. Some manual adaptations needed to be done by RH:
~~~
Taxon uuid has incorrect format. Taxon could... - 11:46 AM task #9030 (Resolved): Import flowering periods for Cyprus
- Applied in changeset commit:cdmlib|43f0d97d9fbc3760be1fbd0d320f3cea94d67706.
- 11:42 AM feature request #9667 (New): Printversion for Keys
- RH:
Schlüsselsicherung: Gibt es eigentlich eine irgendwie geartete Möglichkeit alle Zypern-Gattungs-Schlüssel in e... - 12:17 AM feature request #9664 (In Progress): Add nomenclaturalTitleCache to TeamOrPersonBase
06/11/2021
- 04:59 PM task #9666 (Closed): cdm_tokens module
- This module will provide Drupal tokens:
~~~
cdm:taxon_name
cdm:taxon_name:uninomial
cdm:taxon_name:epithet
~~~... - 02:29 PM feature request #3223 (Feedback): data portal front end for free text search on occurrences
- Is this ticket still needed for general use?
- 02:26 PM task #3996 (Feedback): [Overview] Algaterra search functionality
- 02:15 PM task #3996: [Overview] Algaterra search functionality
- It has been decided not to migrate AlgaTerra.
Should we keep this ticket somehow or close it? - 02:25 PM task #3241 (Feedback): favicon for algaterra
- 02:25 PM task #3241: favicon for algaterra
- Is this ticket stil needed?
- 02:24 PM feature request #3444 (Feedback): Don't show empty General Tab
- Should we keep this ticket and move it elsewhere or close it?
- 02:14 PM task #9251: Specimenview path: better representation of RecordBasis
- AT migration was not the correct target version.
- 02:02 PM feature request #3347 (Feedback): services and REST service controller for molecular classes implemented
- Is this still an open issue? If yes, we should move it to another milestone.
- 01:35 PM bug #9649 (In Progress): Specimens sometimes have empty titleCache instead of class<UUID>
- Maybe fixed by #9665 . Need to check after release if this still happens.
- 01:24 PM bug #9665 (Resolved): Filter out property change event for created and updated and cacheStrategy
- fixed, will be merged into develop with uml 5.25
- 01:20 PM bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
- Currently these events (created and updated) are fired by the CdmPreDataChange Listener which results in setting titl...
- 01:13 PM bug #7817 (Duplicate): Team caches should not show '& al.'
- duplicates #9326, #9464 and #9624
- 09:57 AM feature request #9655 (Resolved): When adding a new team member open search dialogue immediately
- this is fixed now, please review.
06/10/2021
- 03:42 PM feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
- Similar to collectorTitle(Cache) we need a cache for nomenclaturalTitle in Person, too.
This is to make it possible ... - 10:53 AM bug #9663: Remove additional text from media title
- please review.
- 10:52 AM bug #9663 (Resolved): Remove additional text from media title
- Applied in changeset commit:cdmlib|e3e87f678eff890bf1f0f478d4973a0b0e6f70de.
- 10:30 AM bug #9663 (Closed): Remove additional text from media title
- mail NK:
Könnte nicht von vornherein dafür gesorgt werde, dass bei der Generierung des Bilddatenamens im "Titel"-C... - 09:44 AM bug #9662 (New): CDMLight: Output should summarize all MAN with same name and err. sec
- mail WB:
Aber hierzu noch der Wunsch, dass die MAN-sensu Referenzen zusammengefasst werden, wenn der Name und die ... - 09:36 AM bug #9661 (New): Add possibility to clone a MAN
- As long as it is not possible to add more than one sensu reference to a MAN, the users need to add more than one MAN ...
- 08:42 AM feature request #9270: show original spelling on taxon page
- Andreas Müller wrote:
> should we close this as duplicate (for #7781)?
??
06/09/2021
- 07:08 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Andreas Müller wrote:
> Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesi... - 03:44 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesiana-prospective/cdm_datap...
- 03:42 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- I checked in old databases from 12_2020 (before nomenclatural sources movement) and 04_2021 (before deleting old Taxo...
- 01:41 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Strange is, this problem exists only in flora_malesiana_prospective. In no other production database such duplicate r...
- 01:25 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- But there are multiple nomSources that link to the same name:
~~~
SELECT *
FROM OriginalSourceBase osb
WHERE o... - 01:15 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- I tested by calling
~~~
appCtr.getOccurrenceService().findRootUnitDTOs(UUID.fromString("2debf5ee-cb57-40bc-af89-1... - 05:51 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- I will implement the update script now so we also need the fields in taxeditor
- 01:32 PM feature request #9655: When adding a new team member open search dialogue immediately
- The classes which are involved in creating the new element are:
AbstractUnboundEntityCollectionSection.java and Te... - 10:31 AM feature request #9655: When adding a new team member open search dialogue immediately
- Andreas Müller wrote:
> Katja Luther wrote:
> > This is not as easy as it seems because the framework of these coll... - 10:12 AM feature request #9655: When adding a new team member open search dialogue immediately
- Katja Luther wrote:
> This is not as easy as it seems because the framework of these collection details views bases ... - 10:07 AM feature request #9655 (In Progress): When adding a new team member open search dialogue immediately
- This is not as easy as it seems because the framework of these collection details views bases on creating a dummy ele...
- 12:33 PM bug #9660 (New): Define which namerelationships are shown and with which label in DB preference
- Preferences for Namerelationshipship output should contain informations about:
* which relationships should be sho... - 11:17 AM feature request #9647: After deduplication the remaining record should get the focus in bulk editor
- This should be fixed, please review.
- 11:13 AM feature request #9647 (Resolved): After deduplication the remaining record should get the focus in bulk editor
- Applied in changeset commit:taxeditor|5924653e4dd6d9ae695675b7ee5a6f98856a9199.
- 08:55 AM task #9659 (Closed): External Links Module reimplemented for flexible configuration
- The links in the *External Links Module* are hard-coded. Adding or changing links always involves developers to take ...
06/08/2021
- 08:45 PM task #9650: Update all titleCaches after upgrade of cache strategies and formatters
- Updated all databases except for col, euromed, euromed_caucasus and vibrant_index names/taxa/specimen
- 05:46 PM task #9364 (Closed): Cleanup authors with multiple & and protected names and teams
- protected (title)caches moved to new ticket #9658.
All "multiple &" solved.
Potentially dangerous protected cac... - 05:43 PM task #9658: Cleanup authors with protected names and authors
- Protected Teams(nomenclaturalTitle):
AlgaTerra: >14000
Cichorieae: 8487
Cuba: 14
Campanula: 1171
Caryo_amaranth: 113... - 05:43 PM task #9658: Cleanup authors with protected names and authors
- Protected Names (still without fulltitlecache and authorshipcache):
Bromeliaceae: 584
Cichorieae: 476
Cuba: 567
Camp... - 05:42 PM task #9658 (New): Cleanup authors with protected names and authors
- copied from #9364
In some databases there are many names with protected caches which may lead to problems when sea... - 03:52 PM bug #9657 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
http://api.cybertaxonomy.org/flora-malesiana-prospective/portal/taxon/2debf5ee-cb57-40bc-af89-173d1d17cefe/rootUnit...- 11:44 AM bug #9651: After creating a new MAN the details view is filled with other MAN
- This problem was caused by setting the focus everytime the name editor is refreshed and all containers are redrawed. ...
- 11:39 AM bug #9651 (Resolved): After creating a new MAN the details view is filled with other MAN
- Applied in changeset commit:taxeditor|1b62813be8ba0f6f5cde2384147c62f0c913f1b6.
- 11:40 AM bug #9654: Deleting a synonym which has no name throws exception
- this should be fixed with the last commit, please review.
- 09:17 AM bug #9654 (Resolved): Deleting a synonym which has no name throws exception
- Applied in changeset commit:cdmlib|0bc2d77330a70a6115316b914b952657f990c624.
- 11:31 AM bug #9656 (New): Closing the referencing objects view should cancel the current request
- Sometimes request take long because a record has many referencing objects. The easiest way to stop this seems to be c...
- 08:52 AM feature request #9655 (Closed): When adding a new team member open search dialogue immediately
- Currently one has to first push the +-button and then the search button but the search button is the only button to p...
06/07/2021
- 10:06 PM bug #9654 (Closed): Deleting a synonym which has no name throws exception
- When deleting a synonym (maybe also a taxon) an undefined exception is thrwon "Error thrown but no associated excepti...
- 05:22 PM bug #9358: OptionalDataException during HTTP invoker call
- Auch bei Cuba trat das Problem jetzt wieder bei der Eingabe von **Verbreitungsdaten** auf:
~~~
WGB:
erster Ein... - 04:51 PM bug #9629: Better handling of OptionalDataException
- You could e.g. recursively iterate through exception e and its causes e.getCause() and check all these exceptions for...
- 04:45 PM bug #9629: Better handling of OptionalDataException
- For testing you could manually throw an OptionalDataException and try to catch it correctly.
- 04:43 PM bug #9629 (Feedback): Better handling of OptionalDataException
- Reopen this ticket. Using toString is incorrect method to check if an exception is in the stacktrace.
exception.to... - 11:29 AM task #9653 (New): update system table with new installation profile name and location
- The installation profile `CDM_Portal` has been renamed to `cdm_portal`. Now Drupal complains with a User warning: "Th...
- 11:20 AM feature request #9652 (New): instances status report web service
- For many devOp use cases it is important to know
* if all instances have been successfully started
This web ser... - 10:07 AM bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
- mail WB:
Hallo,
es geht um die EIngabe eines MAN mit dem gleichen Namen wie ein bereits bestehender MAN (derzeit...
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