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From 05/27/2021 to 06/25/2021

06/25/2021

07:58 PM bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
Andreas Müller
07:44 PM feature request #9682 (New): Implement source for external authors
via webservice to ipni or on something like CDM term server.
Good sources for (botanical) persons are:
Inde...
Andreas Müller
07:41 PM feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
Andreas Müller
07:37 PM feature request #4311 (Resolved): Improve person representation in CDM
Collector titel update script and explicit nomenclaturalTitleCache including protected have been implemented.
Open...
Andreas Müller
07:35 PM task #9681 (New): Open issues for improving person representation
copied from #4311
* usage of "suffix" (correct label??) in "Taxonname reference author" (discuss with NK)
* full ...
Andreas Müller
07:08 PM bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
Seem to work as expected (but not sure if I could reproduce it correctly) Andreas Müller
07:01 PM feature request #9572 (Feedback): After creating a new term tree set the focus to the new tree
Works as expected so we can close the ticket.
I only wonder if it can be further improved. Currently you have to d...
Andreas Müller
06:55 PM feature request #9647 (Feedback): After deduplication the remaining record should get the focus in bulk editor
This generally works as expected but in 20-30% of the cases after setting the focus it got lost immediately again tho... Andreas Müller
06:47 PM bug #9654 (Closed): Deleting a synonym which has no name throws exception
Works as expected Andreas Müller
06:35 PM feature request #9655 (Closed): When adding a new team member open search dialogue immediately
Works as expected. ... and saves time Andreas Müller
06:32 PM bug #9373: In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
How to reproduce:
* Create a specimen with a protected titleCache
* Open specimen tree editor and search for the ...
Andreas Müller
06:23 PM feature request #7178 (New): implement collectorTitleCache in TeamOrPersonField (vaadin)
The collector title is now implemented and available so the according field in vaadin editor can be implemented, too. Andreas Müller
06:20 PM feature request #7178: implement collectorTitleCache in TeamOrPersonField (vaadin)
Andreas Kohlbecker wrote:
> Aber bei diesem Ticket geht es um das vaadin UI nicht um die titleCache-Generierung in d...
Andreas Müller
06:17 PM feature request #9680 (Closed): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
... and extend search on the collectorTitleCache field.
Also the collectorTitleCache should be included in search ...
Andreas Müller
06:12 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
>For Person the result of the collectorTitleCache field should only be displayed but not be editable.
This still s...
Andreas Müller
02:39 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
This should be implemented now, please review. Katja Luther
06:05 PM feature request #9287 (Feedback): Show term details in details view of term tree editor
The buttons for multi-language editing are still enabled. So it is possble to remove a description for a given langua... Andreas Müller
05:51 PM task #9678 (In Progress): Remove Derived- and FieldUnitFacadeCacheStrategies
Mostly implemented but there is still a test in vaadin that fails due to a lazy initialization exception when calling... Andreas Müller
09:52 AM task #9678 (Closed): Remove Derived- and FieldUnitFacadeCacheStrategies
Cache strategies for FieldUnits and DerivedUnits are currently using the DerivedUnitFacadeCacheStrategy or DerivedUni... Andreas Müller
10:32 AM bug #8517 (Closed): SpecimenOrObservation: data from protected titleCache missig in portal pages
The above links work as expected so I think we can close this ticket. Please reopen if you think there is something l... Andreas Müller
10:11 AM task #9679 (New): Formatter and update script for SpecimenOrObservationBase short cache
... or "identityCache".
Also think about deviding titleCache in titleCache and fullTitle(Cache) where only the lat...
Andreas Müller

06/22/2021

07:22 PM feature request #9677: Implement recombine operation
NaK:
ja, genau, es sind Neukombinationen aufgrund neue taxonomische Erkenntnisse, oder einer phylogenetischen Stud...
Andreas Müller
07:19 PM feature request #9677 (New): Implement recombine operation
Currently we have only move and swap operations available for implementing a recombination of a taxon.
However, us...
Andreas Müller
10:10 AM bug #9676: Separators in nomenclatural act representations between identifier and date
Henning wrote:
Im Prinzip wäre es in der Ansicht, die Andreas M. gezeigt hat sinnvoll, mit Komma jeweils zu trennen.
Andreas Kohlbecker
10:09 AM bug #9676 (New): Separators in nomenclatural act representations between identifier and date
Würde es nicht Sinn machen, den Identifier und das Registrierungsdatum auch mit einem Separator zu versehen. Derzeit ... Andreas Kohlbecker

06/18/2021

12:30 PM feature request #8238: Allow interoperability between term trees
The interoperability should be implemented in cdmlib.
addChild() should allow to add a term that is subtype of the...
Katja Luther
09:27 AM feature request #9572 (Resolved): After creating a new term tree set the focus to the new tree
Now also the focus is set to the titleCache, please review. Katja Luther
09:04 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
Discussion how to handle Secundum Reference:
mail AM:
noch eine bisschen detaillierter Überlegung zu der Secund...
Katja Luther

06/17/2021

03:14 PM feature request #9572 (In Progress): After creating a new term tree set the focus to the new tree
After creating a new tree the focus is set to this tree, the focus on titlecache is still missing. Katja Luther

06/16/2021

10:17 PM bug #9634 (Resolved): Update AgentBase and DescriptiveDataSet titleCache length where needed
Andreas Müller
05:33 PM task #9650 (In Progress): Update all titleCaches after upgrade of cache strategies and formatters
Andreas Müller
05:21 PM feature request #3444 (Feedback): Don't show empty General Tab
Andreas Kohlbecker wrote:
> the synonymy can be placed on the general tab, so this ticket is no longer relevant
T...
Andreas Müller
05:03 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
On the linked site above there is also an unnecessary whitespace before the closing bracket and a full stop after foo... Andreas Müller
04:45 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
thanks for that hint. Andreas Kohlbecker
03:45 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
>Aber das original spelling wird hier nicht mit ausgegeben: as „saglione“ – kann man das einstellen? In CDM-light kom... Andreas Müller
11:07 AM feature request #9674 (Resolved): footnote keys for annotations to multilanguageText name descriptions inside brackets
Applied in changeset commit:cdm-dataportal|c4dd76b64df4d09297b4335ac55be13e01833734. Andreas Kohlbecker
10:50 AM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descriptions inside brackets
Gymnocalycium saglionis (Cels) Britton & Rose, Cactaceae 3: 157. 1922 [Original spelling of epithet should be maintai... Andreas Kohlbecker
03:34 PM bug #9675 (Closed): Person initials should never be empty
Andreas Müller
12:05 PM bug #9675 (Resolved): Person initials should never be empty
Applied in changeset commit:cdmlib|5d058335ab6b9a59fe95c0becec9b4072bb6a0b4. Andreas Müller
12:04 PM bug #9675 (Closed): Person initials should never be empty
but null instead Andreas Müller
11:12 AM feature request #3223 (New): data portal front end for free text search on occurrences
Andreas Müller wrote:
> Is there a reason why you assigned the ticket to me? (dataportal front-end and freetext se...
Andreas Kohlbecker
11:07 AM feature request #3223: data portal front end for free text search on occurrences
Yes, I think it is a general requirement and not only for AT.
Therefore I move it to unassigned.
Is there a reaso...
Andreas Müller
10:56 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
Andreas Müller wrote:
> Is this ticket really only about "allowOverride=NULL"? I ask because there is so much additi...
Katja Luther
10:53 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
Is this ticket really only about "allowOverride=NULL"? I ask because there is so much additional information in the d... Andreas Müller
10:52 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
I added a ticket which should try to set the allowOverride to allowNull=false if possible (unfortunately not trival v... Andreas Müller
10:48 AM bug #9672 (In Progress): NPE when CDMPreference contains allowOverride=NULL
Allow override must never be NULL (even if the schema for historical reasons allwos null). Please adapt data in your ... Andreas Müller
10:16 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
Hier ist der Stacktrace:
~~~
Caused by: java.lang.IllegalArgumentException: Can not set boolean field eu.etaxonom...
Andreas Kohlbecker
08:35 AM bug #9672 (Duplicate): NPE when CDMPreference contains allowOverride=NULL
eu.etaxonomy.cdm.api.service.MediaServiceImpl.readResourceMetadataFiltered(MediaRepresentation representation) throws... Katja Luther
10:51 AM feature request #9287 (Resolved): Show term details in details view of term tree editor
this should be fixed. Please review. Katja Luther
10:50 AM task #9673 (New): Remove allowNull from allowOverride
in CdmPreferences, if possible.
Use false (0) instead as default.
Andreas Müller
10:40 AM feature request #9270 (Duplicate): show original spelling on taxon page
Andreas Kohlbecker

06/15/2021

05:06 PM bug #9669 (Closed): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
Andreas Kohlbecker
03:02 PM bug #9669 (Resolved): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
Applied in changeset commit:cdm-dataportal|ecf46c678ce8626ebe6a945c065c76b7e8819e09. Andreas Kohlbecker
03:01 PM bug #9669 (In Progress): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
Andreas Kohlbecker
02:51 PM bug #9669 (Closed): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
~~~
[Tue Jun 15 14:41:08.025031 2021] [php7:notice] [pid 19252] [client 127.0.0.1:53352] PHP Fatal error: Allowed m...
Andreas Kohlbecker
04:26 PM feature request #6213: use separate tempfolder per store updater
should be improved by using subfolders per `Store.storeName`:
pass `Store.storeName` as optional argument to `Http...
Andreas Kohlbecker
04:13 PM bug #9671 (New): handshake_failure on polling for updates at http://eunis.eea.europa.eu/rdf/species.rdf.gz
~~~
javax.net.ssl.SSLHandshakeException: Received fatal alert: handshake_failure
at sun.security.ssl.Alerts...
Andreas Kohlbecker
02:13 PM feature request #3223: data portal front end for free text search on occurrences
This was also required in the campanula project,
As we don't have a specimen search yet, this ticket should conside...
Andreas Kohlbecker
01:42 PM feature request #3444 (Rejected): Don't show empty General Tab
the synonymy can be placed on the general tab, so this ticket is no longer relevant Andreas Kohlbecker
01:41 PM task #3241: favicon for algaterra
Henning, please can you decide? Andreas Kohlbecker
01:14 PM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
In general I wonder if it is a good idea to stay with the new implementation of the method. The current problem shows... Andreas Müller
01:09 PM bug #9668 (Feedback): Secundum reference is switched when swap synonym and accepted taxon
I get
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxon.service
last r...
Andreas Müller
11:01 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
The hotfix is implemented, please review with nightly. Katja Luther
10:14 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
As a workaround the secundum reference is switched in editor for a quick hotfix.
The complete implementation needs...
Katja Luther
09:36 AM bug #9668 (In Progress): Secundum reference is switched when swap synonym and accepted taxon
mail NadjaK:
ich bin gerade auf eine Fehlerquelle gestoßen:

Ich habe Salmonopuntia schickendantzii als neues ...
Katja Luther

06/12/2021

11:53 AM bug #9649 (Resolved): Specimens sometimes have empty titleCache instead of class<UUID>
Set to resolved in case #9665 fixed the issue. Andreas Müller
11:48 AM task #9030 (Closed): Import flowering periods for Cyprus
Import did run. Some manual adaptations needed to be done by RH:
~~~
Taxon uuid has incorrect format. Taxon could...
Andreas Müller
11:46 AM task #9030 (Resolved): Import flowering periods for Cyprus
Applied in changeset commit:cdmlib|43f0d97d9fbc3760be1fbd0d320f3cea94d67706. Andreas Müller
11:42 AM feature request #9667 (New): Printversion for Keys
RH:
Schlüsselsicherung: Gibt es eigentlich eine irgendwie geartete Möglichkeit alle Zypern-Gattungs-Schlüssel in e...
Andreas Müller
12:17 AM feature request #9664 (In Progress): Add nomenclaturalTitleCache to TeamOrPersonBase
Andreas Müller

06/11/2021

04:59 PM task #9666 (Closed): cdm_tokens module
This module will provide Drupal tokens:
~~~
cdm:taxon_name
cdm:taxon_name:uninomial
cdm:taxon_name:epithet
~~~...
Andreas Kohlbecker
02:29 PM feature request #3223 (Feedback): data portal front end for free text search on occurrences
Is this ticket still needed for general use? Andreas Müller
02:26 PM task #3996 (Feedback): [Overview] Algaterra search functionality
Andreas Müller
02:15 PM task #3996: [Overview] Algaterra search functionality
It has been decided not to migrate AlgaTerra.
Should we keep this ticket somehow or close it?
Andreas Müller
02:25 PM task #3241 (Feedback): favicon for algaterra
Andreas Müller
02:25 PM task #3241: favicon for algaterra
Is this ticket stil needed? Andreas Müller
02:24 PM feature request #3444 (Feedback): Don't show empty General Tab
Should we keep this ticket and move it elsewhere or close it? Andreas Müller
02:14 PM task #9251: Specimenview path: better representation of RecordBasis
AT migration was not the correct target version. Andreas Müller
02:02 PM feature request #3347 (Feedback): services and REST service controller for molecular classes implemented
Is this still an open issue? If yes, we should move it to another milestone. Andreas Müller
01:35 PM bug #9649 (In Progress): Specimens sometimes have empty titleCache instead of class<UUID>
Maybe fixed by #9665 . Need to check after release if this still happens. Andreas Müller
01:24 PM bug #9665 (Resolved): Filter out property change event for created and updated and cacheStrategy
fixed, will be merged into develop with uml 5.25 Andreas Müller
01:20 PM bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
Currently these events (created and updated) are fired by the CdmPreDataChange Listener which results in setting titl... Andreas Müller
01:13 PM bug #7817 (Duplicate): Team caches should not show '& al.'
duplicates #9326, #9464 and #9624 Andreas Müller
09:57 AM feature request #9655 (Resolved): When adding a new team member open search dialogue immediately
this is fixed now, please review. Katja Luther

06/10/2021

03:42 PM feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
Similar to collectorTitle(Cache) we need a cache for nomenclaturalTitle in Person, too.
This is to make it possible ...
Andreas Müller
10:53 AM bug #9663: Remove additional text from media title
please review. Katja Luther
10:52 AM bug #9663 (Resolved): Remove additional text from media title
Applied in changeset commit:cdmlib|e3e87f678eff890bf1f0f478d4973a0b0e6f70de. Katja Luther
10:30 AM bug #9663 (Closed): Remove additional text from media title
mail NK:
Könnte nicht von vornherein dafür gesorgt werde, dass bei der Generierung des Bilddatenamens im "Titel"-C...
Katja Luther
09:44 AM bug #9662 (New): CDMLight: Output should summarize all MAN with same name and err. sec
mail WB:
Aber hierzu noch der Wunsch, dass die MAN-sensu Referenzen zusammengefasst werden, wenn der Name und die ...
Katja Luther
09:36 AM bug #9661 (New): Add possibility to clone a MAN
As long as it is not possible to add more than one sensu reference to a MAN, the users need to add more than one MAN ... Katja Luther
08:42 AM feature request #9270: show original spelling on taxon page
Andreas Müller wrote:
> should we close this as duplicate (for #7781)?
??
Andreas Müller

06/09/2021

07:08 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
Andreas Müller wrote:
> Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesi...
Andreas Müller
03:44 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesiana-prospective/cdm_datap... Andreas Müller
03:42 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
I checked in old databases from 12_2020 (before nomenclatural sources movement) and 04_2021 (before deleting old Taxo... Andreas Müller
01:41 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
Strange is, this problem exists only in flora_malesiana_prospective. In no other production database such duplicate r... Andreas Müller
01:25 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
But there are multiple nomSources that link to the same name:
~~~
SELECT *
FROM OriginalSourceBase osb
WHERE o...
Andreas Müller
01:15 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
I tested by calling
~~~
appCtr.getOccurrenceService().findRootUnitDTOs(UUID.fromString("2debf5ee-cb57-40bc-af89-1...
Andreas Müller
05:51 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
I will implement the update script now so we also need the fields in taxeditor Andreas Müller
01:32 PM feature request #9655: When adding a new team member open search dialogue immediately
The classes which are involved in creating the new element are:
AbstractUnboundEntityCollectionSection.java and Te...
Katja Luther
10:31 AM feature request #9655: When adding a new team member open search dialogue immediately
Andreas Müller wrote:
> Katja Luther wrote:
> > This is not as easy as it seems because the framework of these coll...
Katja Luther
10:12 AM feature request #9655: When adding a new team member open search dialogue immediately
Katja Luther wrote:
> This is not as easy as it seems because the framework of these collection details views bases ...
Andreas Müller
10:07 AM feature request #9655 (In Progress): When adding a new team member open search dialogue immediately
This is not as easy as it seems because the framework of these collection details views bases on creating a dummy ele... Katja Luther
12:33 PM bug #9660 (New): Define which namerelationships are shown and with which label in DB preference
Preferences for Namerelationshipship output should contain informations about:
* which relationships should be sho...
Katja Luther
11:17 AM feature request #9647: After deduplication the remaining record should get the focus in bulk editor
This should be fixed, please review. Katja Luther
11:13 AM feature request #9647 (Resolved): After deduplication the remaining record should get the focus in bulk editor
Applied in changeset commit:taxeditor|5924653e4dd6d9ae695675b7ee5a6f98856a9199. Katja Luther
08:55 AM task #9659 (Closed): External Links Module reimplemented for flexible configuration
The links in the *External Links Module* are hard-coded. Adding or changing links always involves developers to take ... Andreas Kohlbecker

06/08/2021

08:45 PM task #9650: Update all titleCaches after upgrade of cache strategies and formatters
Updated all databases except for col, euromed, euromed_caucasus and vibrant_index names/taxa/specimen Andreas Müller
05:46 PM task #9364 (Closed): Cleanup authors with multiple & and protected names and teams
protected (title)caches moved to new ticket #9658.
All "multiple &" solved.
Potentially dangerous protected cac...
Andreas Müller
05:43 PM task #9658: Cleanup authors with protected names and authors
Protected Teams(nomenclaturalTitle):
AlgaTerra: >14000
Cichorieae: 8487
Cuba: 14
Campanula: 1171
Caryo_amarant...
Andreas Müller
05:43 PM task #9658: Cleanup authors with protected names and authors
Protected Names (still without fulltitlecache and authorshipcache):
Bromeliaceae: 584
Cichorieae: 476
Cuba: 567
...
Andreas Müller
05:42 PM task #9658 (New): Cleanup authors with protected names and authors
copied from #9364
In some databases there are many names with protected caches which may lead to problems when sea...
Andreas Müller
03:52 PM bug #9657 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51

http://api.cybertaxonomy.org/flora-malesiana-prospective/portal/taxon/2debf5ee-cb57-40bc-af89-173d1d17cefe/rootUnit...
Andreas Kohlbecker
11:44 AM bug #9651: After creating a new MAN the details view is filled with other MAN
This problem was caused by setting the focus everytime the name editor is refreshed and all containers are redrawed. ... Katja Luther
11:39 AM bug #9651 (Resolved): After creating a new MAN the details view is filled with other MAN
Applied in changeset commit:taxeditor|1b62813be8ba0f6f5cde2384147c62f0c913f1b6. Katja Luther
11:40 AM bug #9654: Deleting a synonym which has no name throws exception
this should be fixed with the last commit, please review. Katja Luther
09:17 AM bug #9654 (Resolved): Deleting a synonym which has no name throws exception
Applied in changeset commit:cdmlib|0bc2d77330a70a6115316b914b952657f990c624. Katja Luther
11:31 AM bug #9656 (New): Closing the referencing objects view should cancel the current request
Sometimes request take long because a record has many referencing objects. The easiest way to stop this seems to be c... Andreas Müller
08:52 AM feature request #9655 (Closed): When adding a new team member open search dialogue immediately
Currently one has to first push the +-button and then the search button but the search button is the only button to p... Andreas Müller

06/07/2021

10:06 PM bug #9654 (Closed): Deleting a synonym which has no name throws exception
When deleting a synonym (maybe also a taxon) an undefined exception is thrwon "Error thrown but no associated excepti... Andreas Müller
05:22 PM bug #9358: OptionalDataException during HTTP invoker call
Auch bei Cuba trat das Problem jetzt wieder bei der Eingabe von **Verbreitungsdaten** auf:
~~~
WGB:
erster Ein...
Andreas Müller
04:51 PM bug #9629: Better handling of OptionalDataException
You could e.g. recursively iterate through exception e and its causes e.getCause() and check all these exceptions for... Andreas Müller
04:45 PM bug #9629: Better handling of OptionalDataException
For testing you could manually throw an OptionalDataException and try to catch it correctly. Andreas Müller
04:43 PM bug #9629 (Feedback): Better handling of OptionalDataException
Reopen this ticket. Using toString is incorrect method to check if an exception is in the stacktrace.
exception.to...
Andreas Müller
11:29 AM task #9653 (New): update system table with new installation profile name and location
The installation profile `CDM_Portal` has been renamed to `cdm_portal`. Now Drupal complains with a User warning: "Th... Andreas Kohlbecker
11:20 AM feature request #9652 (New): instances status report web service
For many devOp use cases it is important to know
* if all instances have been successfully started
This web ser...
Andreas Kohlbecker
10:07 AM bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
mail WB:
Hallo,
es geht um die EIngabe eines MAN mit dem gleichen Namen wie ein bereits bestehender MAN (derzeit...
Katja Luther

06/04/2021

11:37 AM bug #9646 (In Progress): CDM Light: Add name relationship to concatenated string for homotypic group
implemented a first version analogue to portal implementation. Needs more discussion how to handle names also in syno... Katja Luther

06/03/2021

02:46 PM task #9650 (In Progress): Update all titleCaches after upgrade of cache strategies and formatters
Before the databases need to be checked for data dirty data which could be overwritten by cache update (e.g. referenc... Andreas Müller
01:48 PM bug #9649 (Closed): Specimens sometimes have empty titleCache instead of class<UUID>
E.g. in additiviy_ontology after running titleCache update for records 72 and 74 Andreas Müller
01:37 PM task #9648 (New): Remove duplicated extensions
In cichorieae (maybe also E+M) some reference records had a large number of similar extensions.
Most of them (in cic...
Andreas Müller
01:00 PM feature request #9647 (Closed): After deduplication the remaining record should get the focus in bulk editor
this is helpful when working on longer lists because after save the list jumps to the beginning otherwise Andreas Müller
10:39 AM feature request #8476 (Closed): Implement support for TermCollection.isFlat in TaxEditor
This seems to be fully fixed now. I move it back to 5.24 as it was fixed there.
Only open issue (menu) was moved to ...
Andreas Müller
08:23 AM bug #9646 (Closed): CDM Light: Add name relationship to concatenated string for homotypic group
mail WB:
Name relationships werden in der Konkatenierung der homotypischen Gruppen in CDM-Light nicht berücksichti...
Katja Luther
08:21 AM bug #9645 (Closed): CDM Light: Add Type Statement Reference to homotypicalGroup.csv
mail WB:
Hallo,
diese Referenz haben wir offenbar in homotypicGroup.csv vergessen. Die ist für Cuba ziemlich wich...
Katja Luther

06/02/2021

11:32 AM bug #9630 (Closed): Make the handling of computed description configurable
Code is cleaned up. I check the structured descriptions and create a new ticket if necessary. Katja Luther
10:41 AM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Done Andreas Kohlbecker
10:20 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> >
> > >I guess there is still a test to be adapted?
> >...
Andreas Müller
10:16 AM bug #9642 (Feedback): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Andreas Müller wrote:

>
> >I guess there is still a test to be adapted?
>
> whyt exactly do you mean?
Isn...
Andreas Kohlbecker
09:15 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
But I removed the order by from the media specimen sql. As this query always returns max 1 result order by is not nec... Andreas Müller
09:13 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Andreas Kohlbecker wrote:
> In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaI...
Andreas Müller
08:46 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaIds()` is sorted twice: fist b... Andreas Kohlbecker
10:17 AM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
Applied in changeset commit:taxeditor|57a53d78c9cac39492c450ea46b24dc207de55fc. Katja Luther
09:04 AM feature request #8476 (Resolved): Implement support for TermCollection.isFlat in TaxEditor
Andreas Müller wrote:
> Please also test for d&d from vocabulary editor. I have not tested yet.
With the last com...
Katja Luther
08:24 AM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
Andreas Kohlbecker

06/01/2021

10:40 PM bug #9630 (Resolved): Make the handling of computed description configurable
Works now as expected for distributions but needs to be tested for structured descriptions (open new ticket if necess... Andreas Müller
03:04 PM bug #9630: Make the handling of computed description configurable
Katja Luther wrote:
> Andreas Müller wrote:
> > The detail fields in timescope are still editable with "disabled"
...
Andreas Müller
02:48 PM bug #9630: Make the handling of computed description configurable
Andreas Müller wrote:
> The detail fields in timescope are still editable with "disabled"
In my local installatio...
Katja Luther
02:42 PM bug #9630: Make the handling of computed description configurable
Andreas Müller wrote:
> Andreas Müller wrote:
> > And supplemental data of *not*-computed dara are not editable wit...
Katja Luther
02:31 PM bug #9630: Make the handling of computed description configurable
Andreas Müller wrote:
> And supplemental data of *not*-computed dara are not editable with "disabled"
... but onl...
Andreas Müller
02:30 PM bug #9630: Make the handling of computed description configurable
And supplemental data of *not*-computed dara are not editable with "disabled" Andreas Müller
02:28 PM bug #9630: Make the handling of computed description configurable
The detail fields in timescope are still editable with "disabled" Andreas Müller
10:36 AM bug #9630: Make the handling of computed description configurable
Andreas Müller wrote:
> When "disabled" is selected, timescope is still editable (I have only checked distributions...
Katja Luther
10:05 AM bug #9630: Make the handling of computed description configurable
"Invisible" works as expected Andreas Müller
10:04 AM bug #9630: Make the handling of computed description configurable
When "disabled" is selected, timescope is still editable (I have only checked distributions no other descriptions) Andreas Müller
09:54 AM bug #9630 (Feedback): Make the handling of computed description configurable
When selection is "Enabled" the supplemental data and the sources are still disabled. Tested with rem_conf_am/->Speci... Andreas Müller
10:33 PM bug #9644 (Closed): fix NPE in term selection
works as expected. Andreas Müller
10:32 PM bug #9644 (Resolved): fix NPE in term selection
Applied in changeset commit:taxeditor|5bdd89de5a89aca16929c174a3f22e7f0680a4b1. Andreas Müller
10:30 PM bug #9644 (Closed): fix NPE in term selection
An NPE is thrown if a term is deselected in the term selection dialog for term tree items. Andreas Müller
10:15 PM feature request #8474 (Closed): Make TermCollection.orderRelevant usable for TermTrees
This seems to be completely fixed. Maybe you can find out when the last relevant commit was and attache the ticket to... Andreas Müller
10:11 PM bug #8776 (Closed): Open issues for TermCollection.allowDuplicates handling in TaxEditor
Seems to work as expected now. Andreas Müller
11:07 AM bug #8776 (Feedback): Open issues for TermCollection.allowDuplicates handling in TaxEditor
Everything works, only there is one open issue which was not yet on the list: d&d from a vocabulary is still possible... Andreas Müller
10:13 AM bug #8776 (Resolved): Open issues for TermCollection.allowDuplicates handling in TaxEditor
please review Katja Luther
09:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
Please also test for d&d from vocabulary editor. I have not tested yet. Andreas Müller
09:52 PM feature request #8476 (Feedback): Implement support for TermCollection.isFlat in TaxEditor
d&d is still available for moving a term to become a child of another term node. Instead the "is flat" flag is disabl... Andreas Müller
09:39 PM feature request #9643 (New): New menu in term tree editor should have alternatives for flags
copied from #8476, #8474 (and #8776, not really mentioned there)
But as there are 3 flags there is a larger number...
Andreas Müller
07:32 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
opening, saving, editing is working without problems for new and old records. Ticket can be closed. Wolf-Henning Kusber
02:31 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
no errors yet, seems to be correct, but I need to check more examples. Wolf-Henning Kusber
12:57 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
please review on the test system Andreas Kohlbecker
12:47 PM bug #9641 (Resolved): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
Applied in changeset commit:cdm-vaadin|830b420d4d141be5056606b0524e0706c62f3f87. Andreas Kohlbecker
12:45 PM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
Test System
Genus = Sabbea (published, orig. des.) --> open NameTypeDesignation Editor
~~~
Caused by: org.hi...
Andreas Kohlbecker
06:58 PM feature request #6718: Constistent TypeDesignation representation creation
not related to a target version Andreas Müller
06:54 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
"Data" tickets are usually not related to a target version once they are fixed. Therefore I remove it. Andreas Müller
05:05 PM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
please review Andreas Müller
05:05 PM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
The method countMedia and getMedia in OccurrenceImpl was not correctly updated after media was removed from SpecimenO... Andreas Müller
05:01 PM bug #9642 (Resolved): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Applied in changeset commit:cdmlib|d6a8517c4b8892a03e449dfe3c751036ee570bd6. Andreas Müller
02:00 PM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
~~~
12:55:00.629 [flora-malesiana] [qtp1511785794-17712] INFO e.e.c.r.c.DerivedUnitFacadeController - doGetFieldObj...
Andreas Kohlbecker
11:57 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
New Ticket: #9640 Wolf-Henning Kusber
11:57 AM feature request #9640 (New): Updated List ICN/ICBN editions
As a first step, here is an update for the list.
This is a follow-up to ticket #9618
The new list is based on the...
Wolf-Henning Kusber
10:16 AM bug #9638 (Closed): remove trailing full stops from reference titleCaches
Andreas Müller
10:16 AM feature request #9639 (Closed): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
Andreas Müller
09:39 AM feature request #9639 (Resolved): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
Andreas Müller

05/31/2021

10:28 PM feature request #9639 (Closed): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
Andreas Müller
10:23 PM bug #9638 (Resolved): remove trailing full stops from reference titleCaches
Andreas Müller
04:00 PM bug #9638 (Closed): remove trailing full stops from reference titleCaches
Andreas Müller
04:58 PM task #9291 (Closed): Clear all unnecesary TypeDesignation.citation entities and citationDetails
1760 cases cleaned Andreas Kohlbecker
04:38 PM bug #9368 (Closed): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
tested at http://test.e-taxonomy.eu/cdmserver/cichorieae/iiif/taxon/aecd40ae-b77d-495b-a63f-a294c8287089/manifest?typ... Andreas Kohlbecker
02:25 PM bug #9368 (Resolved): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
Applied in changeset commit:cdmlib|7d7ffcf03bdb83d494cc09fdbd1c715353b634cd. Andreas Kohlbecker
04:35 PM bug #9635 (Closed): LazyInitializationException (LIE) in TaxonPortalContoller
works: http://test.e-taxonomy.eu/cdmserver/cichorieae/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=... Andreas Kohlbecker
01:56 PM bug #9635 (Resolved): LazyInitializationException (LIE) in TaxonPortalContoller
Applied in changeset commit:cdmlib|1502b93925149b7602fbc039d141ea2faf234af1. Andreas Kohlbecker
03:13 PM task #9637 (New): overcome mixed use of pageNumber and pageIndex
some controller methods are still using "pageNumber".
This should be replaces in all cases by "pageIndex"
Adapt...
Andreas Kohlbecker
03:05 PM bug #9151 (Closed): invalid pager information in /description/namedAreasInUse webservice
Andreas Kohlbecker
02:51 PM bug #9151 (Resolved): invalid pager information in /description/namedAreasInUse webservice
Applied in changeset commit:cdmlib|b5ddcca9e3953f3fa88188e6f28e171bd40bdf96. Andreas Kohlbecker
02:20 PM bug #9630 (Resolved): Make the handling of computed description configurable
I think now it works, please review Katja Luther
01:06 PM bug #9398 (Closed): ObjectNotFoundException when removing a synonym that is used as NameInSource
works as expected Andreas Müller
12:40 PM bug #9629 (Closed): Better handling of OptionalDataException
This is difficult to review as I can't create the exception that shows if it works or not. However, the code looks ok... Andreas Müller
10:50 AM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
most of the topics are already fixed in the meanwhile. Katja Luther
08:37 AM bug #9636 (Closed): NPE in DeterminationDetailElement
Checked all kind of specimen and field unit and it worked as expected. Katja Luther

05/28/2021

08:34 PM bug #9636: NPE in DeterminationDetailElement
Please review. Andreas Müller
08:33 PM bug #9636 (Resolved): NPE in DeterminationDetailElement
Applied in changeset commit:taxeditor|c7641204b013ae501d942505847201e7617d4d66. Andreas Müller
08:30 PM bug #9636 (Closed): NPE in DeterminationDetailElement
this is due to changes in CdmSectionPart.setFormInput() with commit 8aaabf5035f where derivedUnitFacade is replaced b... Andreas Müller
12:00 PM bug #9398 (Resolved): ObjectNotFoundException when removing a synonym that is used as NameInSource
Applied in changeset commit:cdmlib|fab7562d10933769c27f26176f401cb92d75e234. Katja Luther
09:02 AM bug #9630 (In Progress): Make the handling of computed description configurable
Katja Luther

05/27/2021

04:06 PM bug #9635 (Closed): LazyInitializationException (LIE) in TaxonPortalContoller
http://api.cybertaxonomy.org/euromed/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1&do... Andreas Kohlbecker
03:55 PM bug #9634 (Closed): Update AgentBase and DescriptiveDataSet titleCache length where needed
In some databases the AgentBase titleCache has only length 255, not 800. Also the DescriptiveDataSet titleCache has u... Andreas Müller
02:24 PM bug #9600 (In Progress): Delete of taxon with unselected name delete returns warning
The exceptions where caused by the names of the synonyms (but there are more messages than synonyms, this needs to be... Katja Luther
11:46 AM bug #9629 (Resolved): Better handling of OptionalDataException
the exception is hanlded now, please review. Katja Luther
11:12 AM bug #9630 (Resolved): Make the handling of computed description configurable
this is fixed, please review. Katja Luther
 

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