Activity
From 05/19/2021 to 06/17/2021
06/17/2021
- 03:14 PM Revision eaa38a1c (taxeditor): ref #9572: setfocus to newly created term tree
- 03:14 PM feature request #9572 (In Progress): After creating a new term tree set the focus to the new tree
- After creating a new tree the focus is set to this tree, the focus on titlecache is still missing.
- 03:04 PM Revision 070a27a4 (taxeditor): ref #9337: open in... vocabulary
06/16/2021
- 10:17 PM bug #9634 (Resolved): Update AgentBase and DescriptiveDataSet titleCache length where needed
- 05:33 PM task #9650 (In Progress): Update all titleCaches after upgrade of cache strategies and formatters
- 05:21 PM feature request #3444 (Feedback): Don't show empty General Tab
- Andreas Kohlbecker wrote:
> the synonymy can be placed on the general tab, so this ticket is no longer relevant
T... - 05:03 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- On the linked site above there is also an unnecessary whitespace before the closing bracket and a full stop after foo...
- 04:45 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- thanks for that hint.
- 03:45 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- >Aber das original spelling wird hier nicht mit ausgegeben: as „saglione“ – kann man das einstellen? In CDM-light kom...
- 11:07 AM feature request #9674 (Resolved): footnote keys for annotations to multilanguageText name descriptions inside brackets
- Applied in changeset commit:cdm-dataportal|c4dd76b64df4d09297b4335ac55be13e01833734.
- 10:50 AM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descriptions inside brackets
- Gymnocalycium saglionis (Cels) Britton & Rose, Cactaceae 3: 157. 1922 [Original spelling of epithet should be maintai...
- 03:34 PM bug #9675 (Closed): Person initials should never be empty
- 12:05 PM bug #9675 (Resolved): Person initials should never be empty
- Applied in changeset commit:cdmlib|5d058335ab6b9a59fe95c0becec9b4072bb6a0b4.
- 12:04 PM bug #9675 (Closed): Person initials should never be empty
- but null instead
- 02:28 PM Revision 306337ee (cdmlib): cleanup
- 02:28 PM Revision 5643e3ce (cdmlib): fix #9675 handling for empty initials (cont.)
- 02:03 PM Revision e9970345 (cdm-dataportal): ref #9674 footnote keys for annotations to multilanguageText name descriptions inside brackets - tests adapted
- 01:07 PM Revision 12addc56 (taxeditor): ref #9337, #9287: show details of term and supplemental data of term node
- 01:03 PM Revision 395b1b10 (cdm-dataportal): ref #9666 save access to unset name properties
- 12:05 PM Revision 5d058335 (cdmlib): fix #9675 handling for empty initials
- 11:12 AM feature request #3223 (New): data portal front end for free text search on occurrences
- Andreas Müller wrote:
> Is there a reason why you assigned the ticket to me? (dataportal front-end and freetext se... - 11:07 AM feature request #3223: data portal front end for free text search on occurrences
- Yes, I think it is a general requirement and not only for AT.
Therefore I move it to unassigned.
Is there a reaso... - 11:07 AM Revision c4dd76b6 (cdm-dataportal): fix #9674 footnote keys for annotations to multilanguageText name descriptions inside brackets
- 10:56 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- Andreas Müller wrote:
> Is this ticket really only about "allowOverride=NULL"? I ask because there is so much additi... - 10:53 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- Is this ticket really only about "allowOverride=NULL"? I ask because there is so much additional information in the d...
- 10:52 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- I added a ticket which should try to set the allowOverride to allowNull=false if possible (unfortunately not trival v...
- 10:48 AM bug #9672 (In Progress): NPE when CDMPreference contains allowOverride=NULL
- Allow override must never be NULL (even if the schema for historical reasons allwos null). Please adapt data in your ...
- 10:16 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- Hier ist der Stacktrace:
~~~
Caused by: java.lang.IllegalArgumentException: Can not set boolean field eu.etaxonom... - 08:35 AM bug #9672 (Duplicate): NPE when CDMPreference contains allowOverride=NULL
- eu.etaxonomy.cdm.api.service.MediaServiceImpl.readResourceMetadataFiltered(MediaRepresentation representation) throws...
- 10:51 AM feature request #9287 (Resolved): Show term details in details view of term tree editor
- this should be fixed. Please review.
- 10:50 AM Revision 74ca5142 (taxeditor): ref #9287: show disabled term details in term tree
- 10:50 AM task #9673 (New): Remove allowNull from allowOverride
- in CdmPreferences, if possible.
Use false (0) instead as default. - 10:49 AM Revision ee4b4e44 (taxeditor): ref #9287: show disabled term details in term tree
- 10:40 AM feature request #9270 (Duplicate): show original spelling on taxon page
- 10:33 AM Revision 46aa1f81 (cdm-dataportal): ref #9659 improved ext_link block layout with migration of old installations
06/15/2021
- 05:06 PM bug #9669 (Closed): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- 03:02 PM bug #9669 (Resolved): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- Applied in changeset commit:cdm-dataportal|ecf46c678ce8626ebe6a945c065c76b7e8819e09.
- 03:01 PM bug #9669 (In Progress): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- 02:51 PM bug #9669 (Closed): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- ~~~
[Tue Jun 15 14:41:08.025031 2021] [php7:notice] [pid 19252] [client 127.0.0.1:53352] PHP Fatal error: Allowed m... - 04:26 PM feature request #6213: use separate tempfolder per store updater
- should be improved by using subfolders per `Store.storeName`:
pass `Store.storeName` as optional argument to `Http... - 04:13 PM bug #9671 (New): handshake_failure on polling for updates at http://eunis.eea.europa.eu/rdf/species.rdf.gz
- ~~~
javax.net.ssl.SSLHandshakeException: Received fatal alert: handshake_failure
at sun.security.ssl.Alerts... - 03:33 PM Revision 54a4201c (cdm-dataportal): fix #9669 further improvement of cdm_ws_fetch_all()
- 03:02 PM Revision ecf46c67 (cdm-dataportal): fix #9669 avoiding infinite loop in cdm_ws_fetch_all()
- 02:28 PM Revision 4adc4eeb (cdm-dataportal): selenium test for AdvancedSearchForms
- 02:21 PM Revision 2ae1340d (cdm-dataportal): fixing remamend array key
- 02:13 PM feature request #3223: data portal front end for free text search on occurrences
- This was also required in the campanula project,
As we don't have a specimen search yet, this ticket should conside... - 02:12 PM Revision c9e4e6f8 (taxeditor): ref #9668: hotfix for secundum handling when swap syn and accepted - continue
- 01:42 PM feature request #3444 (Rejected): Don't show empty General Tab
- the synonymy can be placed on the general tab, so this ticket is no longer relevant
- 01:41 PM task #3241: favicon for algaterra
- Henning, please can you decide?
- 01:14 PM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- In general I wonder if it is a good idea to stay with the new implementation of the method. The current problem shows...
- 01:09 PM bug #9668 (Feedback): Secundum reference is switched when swap synonym and accepted taxon
- I get
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxon.service
last r... - 11:01 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- The hotfix is implemented, please review with nightly.
- 10:14 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- As a workaround the secundum reference is switched in editor for a quick hotfix.
The complete implementation needs... - 09:36 AM bug #9668 (In Progress): Secundum reference is switched when swap synonym and accepted taxon
- mail NadjaK:
ich bin gerade auf eine Fehlerquelle gestoßen:
Ich habe Salmonopuntia schickendantzii als neues ... - 12:00 PM Revision 9bf8e8eb (taxeditor): ref #9337: paste does not need save
- 10:08 AM Revision 5b77dba4 (taxeditor): ref #9668: hotfix for secundum handling when swap syn and accepted
- 10:00 AM Revision 67b94f1a (taxeditor): Updated version in pom / project files to taxeditor version : 5.24.1 and cdmlib version : 5.24.0
- 09:40 AM Revision 63004250 (taxeditor): ref #9668: hotfix for secundum handling when swap syn and accepted
- 08:30 AM Revision aad1e999 (cdm-dataportal): adapting portal to modified media specimen cache
06/14/2021
- 05:47 PM Revision a1edfba5 (cdm-dataportal): ref #9659 more compact layout for ext_links by html5 labels
- 05:40 PM Revision 0501ab2c (cdm-dataportal): ref #9659 updating existing ext_link block configurations
- 05:25 PM Revision 09c59988 (cdm-dataportal): ref #9666 bug fix in cdm_tokens
- 05:11 PM Revision 89aa0117 (cdm-dataportal): ref #9659 field 'glue' removed from admin pages
- 04:46 PM Revision 0a311d85 (cdm-dataportal): ref #9659 all ext_links templates with cdm_tokens, glue removed
- 04:41 PM Revision 6325712d (cdm-dataportal): ref #9659 updating install script for ext_links using cdm_tokens
- 04:39 PM Revision 580cd817 (cdm-dataportal): ref #9666 more cdm:taxon_name tokens
- 04:11 PM Revision 5e971c04 (cdmlib): ref #9666 adding is{rankLevel} to term serialization for cdm_tokens
06/12/2021
- 11:53 AM bug #9649 (Resolved): Specimens sometimes have empty titleCache instead of class<UUID>
- Set to resolved in case #9665 fixed the issue.
- 11:48 AM task #9030 (Closed): Import flowering periods for Cyprus
- Import did run. Some manual adaptations needed to be done by RH:
~~~
Taxon uuid has incorrect format. Taxon could... - 11:46 AM task #9030 (Resolved): Import flowering periods for Cyprus
- Applied in changeset commit:cdmlib|43f0d97d9fbc3760be1fbd0d320f3cea94d67706.
- 11:45 AM Revision ae8f9c66 (cdmlib): minor
- 11:45 AM Revision 43f0d97d (cdmlib): fix #9030 add reverse order pattern for monthPattern with extreme values
- 11:42 AM feature request #9667 (New): Printversion for Keys
- RH:
Schlüsselsicherung: Gibt es eigentlich eine irgendwie geartete Möglichkeit alle Zypern-Gattungs-Schlüssel in e... - 12:17 AM feature request #9664 (In Progress): Add nomenclaturalTitleCache to TeamOrPersonBase
- 12:16 AM Revision 15365ed8 (cdmlib-apps): ref #9664 change nomTitle to nomTitleCache in cdmlib-app
- 12:13 AM Revision 74a337cc (cdmlib-apps): ref #9030 add Cyprus Flowering period activator
06/11/2021
- 06:16 PM Revision d2d48638 (cdm-dataportal): ref #9659 using cdm_tokens in ext_links - fist step
- 06:15 PM Revision 93f61a88 (cdm-dataportal): cleaning up
- 05:40 PM Revision ca1ab005 (cdm-dataportal): ref #9666 cdm_tokens module implemented
- 05:00 PM Revision 1702d40c (cdm-dataportal): ref #9666 get_current_name_uuid() in cdm_dataportal
- 04:59 PM task #9666 (Closed): cdm_tokens module
- This module will provide Drupal tokens:
~~~
cdm:taxon_name
cdm:taxon_name:uninomial
cdm:taxon_name:epithet
~~~... - 02:29 PM feature request #3223 (Feedback): data portal front end for free text search on occurrences
- Is this ticket still needed for general use?
- 02:26 PM task #3996 (Feedback): [Overview] Algaterra search functionality
- 02:15 PM task #3996: [Overview] Algaterra search functionality
- It has been decided not to migrate AlgaTerra.
Should we keep this ticket somehow or close it? - 02:25 PM task #3241 (Feedback): favicon for algaterra
- 02:25 PM task #3241: favicon for algaterra
- Is this ticket stil needed?
- 02:24 PM feature request #3444 (Feedback): Don't show empty General Tab
- Should we keep this ticket and move it elsewhere or close it?
- 02:14 PM task #9251: Specimenview path: better representation of RecordBasis
- AT migration was not the correct target version.
- 02:02 PM feature request #3347 (Feedback): services and REST service controller for molecular classes implemented
- Is this still an open issue? If yes, we should move it to another milestone.
- 01:49 PM Revision 5c5f760a (cdm-dataportal): ref #9659 ext_links update function to create scheme and migrate settings
- 01:35 PM bug #9649 (In Progress): Specimens sometimes have empty titleCache instead of class<UUID>
- Maybe fixed by #9665 . Need to check after release if this still happens.
- 01:24 PM bug #9665 (Resolved): Filter out property change event for created and updated and cacheStrategy
- fixed, will be merged into develop with uml 5.25
- 01:20 PM bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
- Currently these events (created and updated) are fired by the CdmPreDataChange Listener which results in setting titl...
- 01:17 PM Revision f545e3c5 (cdm-dataportal): ref #9659 ext_links enable/disable bug fix
- 01:13 PM bug #7817 (Duplicate): Team caches should not show '& al.'
- duplicates #9326, #9464 and #9624
- 12:02 PM Revision 5fcd18f5 (cdm-dataportal): ref #9659 ext_links order configurable
- 11:50 AM Revision 019d69fa (cdm-dataportal): ref #9659 ext_links appaearance option
- 11:13 AM Revision c7198d48 (taxeditor): ref #9629: iterate over causes of exception
- 09:57 AM feature request #9655 (Resolved): When adding a new team member open search dialogue immediately
- this is fixed now, please review.
- 09:55 AM Revision b108d934 (taxeditor): ref #9655: code cleaning
- 09:50 AM Revision a3ebe576 (taxeditor): ref #9655: adapt TeamMemberSection to call selection dialog when click on +
06/10/2021
- 10:12 PM Revision 20125bcd (cdm-dataportal): avoiding accessing unset properties
- 09:38 PM Revision fc1b00e2 (cdm-dataportal): ref #9659 ext_links migration of old setting complete - bugfix for status
- 08:29 PM Revision a14257fa (cdm-dataportal): ref #9659 ext_links migration of old setting complete
- 03:42 PM feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
- Similar to collectorTitle(Cache) we need a cache for nomenclaturalTitle in Person, too.
This is to make it possible ... - 03:31 PM Revision 819c7b2e (cdmlib): adapt image length in MediaInfoFactoryTest
- 02:36 PM Revision c03b5f5d (cdm-dataportal): ref #9659 preparing old settings migration
- 01:57 PM Revision b03fb28d (cdm-dataportal): ref #9659 ext_links enable/disable operation
- 01:25 PM Revision f16aa6b9 (cdmlib): fix #9663: remove additional text and file ending - adapt tests
- 01:18 PM Revision 0f9caab7 (cdmlib): fix #9663: remove additional text and file ending - continue
- 10:53 AM bug #9663: Remove additional text from media title
- please review.
- 10:52 AM bug #9663 (Resolved): Remove additional text from media title
- Applied in changeset commit:cdmlib|e3e87f678eff890bf1f0f478d4973a0b0e6f70de.
- 10:30 AM bug #9663 (Closed): Remove additional text from media title
- mail NK:
Könnte nicht von vornherein dafür gesorgt werde, dass bei der Generierung des Bilddatenamens im "Titel"-C... - 10:52 AM Revision e3e87f67 (cdmlib): fix #9663: remove additional text and file ending
- 10:27 AM Revision 0e38f1bf (cdm-dataportal): ref #9659 ext_links editing possible
- 09:45 AM Revision 62e489ea (cdmlib): add version and SchemaUpdater_5230_5250 for new model version 5.25
- 09:45 AM Revision 0a59dd14 (cdmlib): cleanup
- 09:44 AM bug #9662 (New): CDMLight: Output should summarize all MAN with same name and err. sec
- mail WB:
Aber hierzu noch der Wunsch, dass die MAN-sensu Referenzen zusammengefasst werden, wenn der Name und die ... - 09:36 AM bug #9661 (New): Add possibility to clone a MAN
- As long as it is not possible to add more than one sensu reference to a MAN, the users need to add more than one MAN ...
- 08:42 AM feature request #9270: show original spelling on taxon page
- Andreas Müller wrote:
> should we close this as duplicate (for #7781)?
?? - 08:29 AM Revision d259fad0 (cdm-dataportal): ref #9659 adding enable/disable operation again
06/09/2021
- 07:08 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Andreas Müller wrote:
> Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesi... - 03:44 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesiana-prospective/cdm_datap...
- 03:42 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- I checked in old databases from 12_2020 (before nomenclatural sources movement) and 04_2021 (before deleting old Taxo...
- 01:41 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Strange is, this problem exists only in flora_malesiana_prospective. In no other production database such duplicate r...
- 01:25 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- But there are multiple nomSources that link to the same name:
~~~
SELECT *
FROM OriginalSourceBase osb
WHERE o... - 01:15 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- I tested by calling
~~~
appCtr.getOccurrenceService().findRootUnitDTOs(UUID.fromString("2debf5ee-cb57-40bc-af89-1... - 06:05 PM Revision 2a3a2a4f (cdm-dataportal): ref #9659 database table scheme for ext_links
- 06:03 PM Revision 0a381a96 (cdm-dataportal): ref #9659 ext_links overview: removing ensable/disable action
- 05:51 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- I will implement the update script now so we also need the fields in taxeditor
- 05:36 PM Revision deba3cdd (cdm-dataportal): ref #9659 fixing ext_links edit link
- 04:40 PM Revision 82e80b81 (cdm-dataportal): ref #9659 admin overview improved and edit form ready
- 01:32 PM feature request #9655: When adding a new team member open search dialogue immediately
- The classes which are involved in creating the new element are:
AbstractUnboundEntityCollectionSection.java and Te... - 10:31 AM feature request #9655: When adding a new team member open search dialogue immediately
- Andreas Müller wrote:
> Katja Luther wrote:
> > This is not as easy as it seems because the framework of these coll... - 10:12 AM feature request #9655: When adding a new team member open search dialogue immediately
- Katja Luther wrote:
> This is not as easy as it seems because the framework of these collection details views bases ... - 10:07 AM feature request #9655 (In Progress): When adding a new team member open search dialogue immediately
- This is not as easy as it seems because the framework of these collection details views bases on creating a dummy ele...
- 12:33 PM bug #9660 (New): Define which namerelationships are shown and with which label in DB preference
- Preferences for Namerelationshipship output should contain informations about:
* which relationships should be sho... - 11:17 AM feature request #9647: After deduplication the remaining record should get the focus in bulk editor
- This should be fixed, please review.
- 11:13 AM feature request #9647 (Resolved): After deduplication the remaining record should get the focus in bulk editor
- Applied in changeset commit:taxeditor|5924653e4dd6d9ae695675b7ee5a6f98856a9199.
- 11:14 AM Revision 5924653e (taxeditor): fix #9647: set focus to deduplication target
- 08:56 AM Revision ecd1141f (cdm-dataportal): ref #9659 admin overview on ext_links working
- 08:55 AM task #9659 (Closed): External Links Module reimplemented for flexible configuration
- The links in the *External Links Module* are hard-coded. Adding or changing links always involves developers to take ...
- 08:52 AM Revision e0a61933 (cdmlib): ref #9646: add name relationships to homotypicgroupString and add type des reference
06/08/2021
- 08:45 PM task #9650: Update all titleCaches after upgrade of cache strategies and formatters
- Updated all databases except for col, euromed, euromed_caucasus and vibrant_index names/taxa/specimen
- 05:46 PM task #9364 (Closed): Cleanup authors with multiple & and protected names and teams
- protected (title)caches moved to new ticket #9658.
All "multiple &" solved.
Potentially dangerous protected cac... - 05:43 PM task #9658: Cleanup authors with protected names and authors
- Protected Teams(nomenclaturalTitle):
AlgaTerra: >14000
Cichorieae: 8487
Cuba: 14
Campanula: 1171
Caryo_amaranth: 113... - 05:43 PM task #9658: Cleanup authors with protected names and authors
- Protected Names (still without fulltitlecache and authorshipcache):
Bromeliaceae: 584
Cichorieae: 476
Cuba: 567
Camp... - 05:42 PM task #9658 (New): Cleanup authors with protected names and authors
- copied from #9364
In some databases there are many names with protected caches which may lead to problems when sea... - 03:52 PM bug #9657 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
http://api.cybertaxonomy.org/flora-malesiana-prospective/portal/taxon/2debf5ee-cb57-40bc-af89-173d1d17cefe/rootUnit...- 03:39 PM Revision be02c88f (cdmlib): fixing some more bugs
- 03:21 PM Revision 7599ba75 (cdmlib): fixing NPE in DerivationEventDTO
- 11:44 AM bug #9651: After creating a new MAN the details view is filled with other MAN
- This problem was caused by setting the focus everytime the name editor is refreshed and all containers are redrawed. ...
- 11:39 AM bug #9651 (Resolved): After creating a new MAN the details view is filled with other MAN
- Applied in changeset commit:taxeditor|1b62813be8ba0f6f5cde2384147c62f0c913f1b6.
- 11:40 AM bug #9654: Deleting a synonym which has no name throws exception
- this should be fixed with the last commit, please review.
- 09:17 AM bug #9654 (Resolved): Deleting a synonym which has no name throws exception
- Applied in changeset commit:cdmlib|0bc2d77330a70a6115316b914b952657f990c624.
- 11:40 AM Revision 1b62813b (taxeditor): fix #9651: setFocus only for selected conceptContainer
- 11:31 AM bug #9656 (New): Closing the referencing objects view should cancel the current request
- Sometimes request take long because a record has many referencing objects. The easiest way to stop this seems to be c...
- 09:14 AM Revision 0bc2d773 (cdmlib): fix #9654: avoid NPE for synonym without name
- 08:52 AM feature request #9655 (Closed): When adding a new team member open search dialogue immediately
- Currently one has to first push the +-button and then the search button but the search button is the only button to p...
06/07/2021
- 10:06 PM bug #9654 (Closed): Deleting a synonym which has no name throws exception
- When deleting a synonym (maybe also a taxon) an undefined exception is thrwon "Error thrown but no associated excepti...
- 05:22 PM bug #9358: OptionalDataException during HTTP invoker call
- Auch bei Cuba trat das Problem jetzt wieder bei der Eingabe von **Verbreitungsdaten** auf:
~~~
WGB:
erster Ein... - 04:51 PM Revision c428113e (cdm-dataportal): Merge tag '5.24.1' into develop
- tagging hfx release 5.24.1
- 04:51 PM bug #9629: Better handling of OptionalDataException
- You could e.g. recursively iterate through exception e and its causes e.getCause() and check all these exceptions for...
- 04:45 PM bug #9629: Better handling of OptionalDataException
- For testing you could manually throw an OptionalDataException and try to catch it correctly.
- 04:43 PM bug #9629 (Feedback): Better handling of OptionalDataException
- Reopen this ticket. Using toString is incorrect method to check if an exception is in the stacktrace.
exception.to... - 04:51 PM Revision c02c7498 (cdm-dataportal): Merge branch 'hotfix/5.24.1'
- 04:50 PM Revision f4d1f849 (cdm-dataportal): Merge branch 'develop' into hotfix/5.24.1
- 04:35 PM Revision 53911330 (cdm-dataportal): finding package local composer - 2
- 04:31 PM Revision 298df01d (cdm-dataportal): backup filename with minute granularity
- 04:26 PM Revision a59edf6c (cdm-dataportal): finding package local composer
- 03:13 PM Revision 73e0c626 (cdm-dataportal): fix-permission.sh bugfix
- 03:11 PM Revision 1e12be41 (cdm-dataportal): fix-permission.sh and updating README
- 02:52 PM Revision b84e63d6 (cdm-dataportal): feedback of fix-permission.sh
- 02:48 PM Revision 04aea066 (cdm-dataportal): fixing permissions of fix-permission.sh
- 02:45 PM Revision c2a36c08 (cdm-dataportal): admin script to fix permissions
- 12:53 PM Revision 8716981b (cdm-dataportal): update script with more doc and preserving symlinks
- 11:29 AM task #9653 (New): update system table with new installation profile name and location
- The installation profile `CDM_Portal` has been renamed to `cdm_portal`. Now Drupal complains with a User warning: "Th...
- 11:20 AM feature request #9652 (New): instances status report web service
- For many devOp use cases it is important to know
* if all instances have been successfully started
This web ser... - 10:10 AM Revision 90def588 (taxeditor): avoid NPE
- 10:07 AM bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
- mail WB:
Hallo,
es geht um die EIngabe eines MAN mit dem gleichen Namen wie ein bereits bestehender MAN (derzeit... - 09:09 AM Revision 04434a55 (cdm-dataportal): test independent from clean_url setting
- 08:50 AM Revision 73d7cb40 (cdm-dataportal): test independend from module location
06/04/2021
- 10:12 PM Revision 53bfedc2 (cdm-dataportal): adapting test suite to new installation package structure
- 11:37 AM bug #9646 (In Progress): CDM Light: Add name relationship to concatenated string for homotypic group
- implemented a first version analogue to portal implementation. Needs more discussion how to handle names also in syno...
- 11:26 AM Revision 1cdff041 (cdmlib): ref #9645, #9646: add namerelations to homotypicGrouString and reference to type/specimenstatement
06/03/2021
- 02:46 PM task #9650 (In Progress): Update all titleCaches after upgrade of cache strategies and formatters
- Before the databases need to be checked for data dirty data which could be overwritten by cache update (e.g. referenc...
- 01:48 PM bug #9649 (Closed): Specimens sometimes have empty titleCache instead of class<UUID>
- E.g. in additiviy_ontology after running titleCache update for records 72 and 74
- 01:37 PM task #9648 (New): Remove duplicated extensions
- In cichorieae (maybe also E+M) some reference records had a large number of similar extensions.
Most of them (in cic... - 01:00 PM feature request #9647 (Closed): After deduplication the remaining record should get the focus in bulk editor
- this is helpful when working on longer lists because after save the list jumps to the beginning otherwise
- 10:39 AM feature request #8476 (Closed): Implement support for TermCollection.isFlat in TaxEditor
- This seems to be fully fixed now. I move it back to 5.24 as it was fixed there.
Only open issue (menu) was moved to ... - 08:23 AM bug #9646 (Closed): CDM Light: Add name relationship to concatenated string for homotypic group
- mail WB:
Name relationships werden in der Konkatenierung der homotypischen Gruppen in CDM-Light nicht berücksichti... - 08:21 AM bug #9645 (Closed): CDM Light: Add Type Statement Reference to homotypicalGroup.csv
- mail WB:
Hallo,
diese Referenz haben wir offenbar in homotypicGroup.csv vergessen. Die ist für Cuba ziemlich wich...
06/02/2021
- 03:10 PM Revision 85326264 (taxeditor): ref #9448: remove E4 from file names - bulkeditor continue
- 03:06 PM Revision 865e32f6 (taxeditor): ref #9448: remove E4 from file names - adapt fragment.e4xmi
- 01:23 PM Revision 8a6625ad (taxeditor): ref #9448: remove E4 from file names - continue
- 01:20 PM Revision a6d3d9c5 (taxeditor): ref #9448: remove E4 from file names - supplementalDataView
- 01:16 PM Revision bbae6889 (taxeditor): ref #9448: remove E4 from file names - coninue and cleanup
- 12:47 PM Revision 45e18d0e (taxeditor): code cleaning
- 12:34 PM Revision 38e9eb06 (taxeditor): ref #9448: remove E4 from file names - cdmViewer
- 12:30 PM Revision 3eb83ba9 (cdm-dataportal): making ci scripts executable
- 12:30 PM Revision 1645f1e2 (taxeditor): ref #9448: remove E4 from file names - bulkeditor continue
- 12:27 PM Revision 843eefc4 (taxeditor): ref #9448: remove E4 from file names - bulkeditor package
- 12:24 PM Revision c47199f3 (cdm-dataportal): Merge branch 'release/5.24.0' into develop
- 12:24 PM Revision 85f6952f (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
- 12:24 PM Revision 4bb90f2f (cdm-dataportal): updating poms for branch'release/5.24.0' with non-snapshot versions
- 12:24 PM Revision 803fc583 (cdm-dataportal): release-preparation: production level css
- 12:13 PM Revision c58e5687 (cdm-dataportal): updating poms for 5.25.0-SNAPSHOT development
- 12:08 PM Revision fa228679 (taxeditor): ref #9448: remove E4 from file names - continue
- 12:04 PM Revision 2611dff9 (taxeditor): ref #9448: remove E4 from file names
- 11:50 AM Revision 0d88bbd4 (taxeditor): Merge branch 'release/5.24.0' into develop
- 11:50 AM Revision 031baf62 (taxeditor): Merge branch 'release/5.24.0'
- 11:48 AM Revision da969bb3 (cdm-dataportal): release-preparation: production level css
- 11:45 AM Revision 717af2aa (cdm-server): Merge branch 'release/5.24.0' into develop
- 11:45 AM Revision f780fcfc (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 11:44 AM Revision a2edd9ec (cdm-server): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:42 AM Revision ef93e952 (cdm-webapp): Merge branch 'release/5.24.0' into develop
- 11:42 AM Revision 13e17276 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 11:42 AM Revision 06c02838 (cdm-webapp): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:42 AM Revision c1e7bfd3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.24.0
- 11:42 AM Revision 36a499c6 (cdm-vaadin): Merge branch 'release/5.24.0' into develop
- 11:42 AM Revision 81415a2d (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 11:38 AM Revision ba1014bf (cdm-vaadin): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:37 AM Revision 13817a25 (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0
- 11:32 AM bug #9630 (Closed): Make the handling of computed description configurable
- Code is cleaned up. I check the structured descriptions and create a new ticket if necessary.
- 11:25 AM Revision 59fa4a9b (cdmlib): Updating develop poms back to pre merge state
- 11:25 AM Revision 3a298583 (cdmlib): Merge branch 'master' into develop
- 11:25 AM Revision 627867d1 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 11:25 AM Revision def9db7a (cdmlib): Merge branch 'release/5.24.0'
- 11:09 AM Revision 512616ce (cdmlib): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:06 AM Revision 6ab495c1 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.24.0-SNAPSHOT
- 11:06 AM Revision 1f268784 (cdm-webapp): updating poms for 5.25.0-SNAPSHOT development
- 11:06 AM Revision ff128f85 (cdm-webapp): updating poms for 5.24.0 branch with snapshot versions
- 11:05 AM Revision 463f5c7b (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.25.0-SNAPSHOT
- 11:03 AM Revision 2e85a104 (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 11:03 AM Revision 92e8e83e (cdm-vaadin): updating poms for 5.25.0-SNAPSHOT development
- 11:03 AM Revision 0ebe4a8b (cdm-vaadin): updating poms for 5.24.0 branch with snapshot versions
- 11:03 AM Revision abde3bb8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
- 10:59 AM Revision b43ac178 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
- 10:59 AM Revision 43e40bda (cdm-vaadin): jenkins bumping cdmlib.version to 5.26.0-SNAPSHOT
- 10:56 AM Revision d9d02bca (cdm-vaadin): updating poms for 5.25.0-SNAPSHOT development
- 10:56 AM Revision 8baba0a0 (cdm-vaadin): updating poms for 5.24.0 branch with snapshot versions
- 10:56 AM Revision e974b018 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
- 10:56 AM Revision 7fbd6a6c (cdm-server): updating poms for 5.25.0-SNAPSHOT development
- 10:56 AM Revision 37d8780f (cdm-dataportal): updating poms for 5.25.0-SNAPSHOT development
- 10:55 AM Revision 06b435a4 (taxeditor): Updated version in pom / project files to taxeditor version : 5.25.0-SNAPSHOT and cdmlib version : 5.25.0-SNAPSHOT
- 10:55 AM Revision 2ee57d46 (taxeditor): Updated version in pom / project files to taxeditor version : 5.24.0 and cdmlib version : 5.24.0
- 10:51 AM Revision ef97cad1 (cdmlib): updating poms for 5.25.0-SNAPSHOT development
- 10:41 AM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Done
- 10:20 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> >
> > >I guess there is still a test to be adapted?
> >... - 10:16 AM bug #9642 (Feedback): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Andreas Müller wrote:
>
> >I guess there is still a test to be adapted?
>
> whyt exactly do you mean?
Isn... - 09:15 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- But I removed the order by from the media specimen sql. As this query always returns max 1 result order by is not nec...
- 09:13 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Andreas Kohlbecker wrote:
> In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaI... - 08:46 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaIds()` is sorted twice: fist b...
- 10:40 AM Revision 678da343 (cdm-dataportal): ref #9642 adapting test method to more media appearing in the derivate path view
- 10:17 AM Revision 57a53d78 (taxeditor): fix #8476: fix paste not allowed for nodes if tree is flat
- 10:17 AM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
- Applied in changeset commit:taxeditor|57a53d78c9cac39492c450ea46b24dc207de55fc.
- 09:04 AM feature request #8476 (Resolved): Implement support for TermCollection.isFlat in TaxEditor
- Andreas Müller wrote:
> Please also test for d&d from vocabulary editor. I have not tested yet.
With the last com... - 10:09 AM Revision 02c718f2 (taxeditor): ref #8776: correct enable/disable allowDuplicates
- 10:08 AM Revision 37f2b410 (cdmlib): ref #8776: fix contains duplicates in dto
- 09:15 AM Revision 7c47b73f (cdmlib): ref #9642 remove unnecessary order by
- 09:01 AM Revision 12e7c169 (taxeditor): ref #8476: fix d&d in flat tree and cleanup
- 08:24 AM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
06/01/2021
- 10:40 PM bug #9630 (Resolved): Make the handling of computed description configurable
- Works now as expected for distributions but needs to be tested for structured descriptions (open new ticket if necess...
- 03:04 PM bug #9630: Make the handling of computed description configurable
- Katja Luther wrote:
> Andreas Müller wrote:
> > The detail fields in timescope are still editable with "disabled"
... - 02:48 PM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> The detail fields in timescope are still editable with "disabled"
In my local installatio... - 02:42 PM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> Andreas Müller wrote:
> > And supplemental data of *not*-computed dara are not editable wit... - 02:31 PM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> And supplemental data of *not*-computed dara are not editable with "disabled"
... but onl... - 02:30 PM bug #9630: Make the handling of computed description configurable
- And supplemental data of *not*-computed dara are not editable with "disabled"
- 02:28 PM bug #9630: Make the handling of computed description configurable
- The detail fields in timescope are still editable with "disabled"
- 10:36 AM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> When "disabled" is selected, timescope is still editable (I have only checked distributions... - 10:05 AM bug #9630: Make the handling of computed description configurable
- "Invisible" works as expected
- 10:04 AM bug #9630: Make the handling of computed description configurable
- When "disabled" is selected, timescope is still editable (I have only checked distributions no other descriptions)
- 09:54 AM bug #9630 (Feedback): Make the handling of computed description configurable
- When selection is "Enabled" the supplemental data and the sources are still disabled. Tested with rem_conf_am/->Speci...
- 10:33 PM bug #9644 (Closed): fix NPE in term selection
- works as expected.
- 10:32 PM bug #9644 (Resolved): fix NPE in term selection
- Applied in changeset commit:taxeditor|5bdd89de5a89aca16929c174a3f22e7f0680a4b1.
- 10:30 PM bug #9644 (Closed): fix NPE in term selection
- An NPE is thrown if a term is deselected in the term selection dialog for term tree items.
- 10:32 PM Revision 4334327a (taxeditor): cleanup
- 10:32 PM Revision 5bdd89de (taxeditor): fix #9644 fix NPE in term selection
- 10:15 PM feature request #8474 (Closed): Make TermCollection.orderRelevant usable for TermTrees
- This seems to be completely fixed. Maybe you can find out when the last relevant commit was and attache the ticket to...
- 10:11 PM bug #8776 (Closed): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Seems to work as expected now.
- 11:07 AM bug #8776 (Feedback): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Everything works, only there is one open issue which was not yet on the list: d&d from a vocabulary is still possible...
- 10:13 AM bug #8776 (Resolved): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- please review
- 09:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
- Please also test for d&d from vocabulary editor. I have not tested yet.
- 09:52 PM feature request #8476 (Feedback): Implement support for TermCollection.isFlat in TaxEditor
- d&d is still available for moving a term to become a child of another term node. Instead the "is flat" flag is disabl...
- 09:39 PM feature request #9643 (New): New menu in term tree editor should have alternatives for flags
- copied from #8476, #8474 (and #8776, not really mentioned there)
But as there are 3 flags there is a larger number... - 07:32 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- opening, saving, editing is working without problems for new and old records. Ticket can be closed.
- 02:31 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- no errors yet, seems to be correct, but I need to check more examples.
- 12:57 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- please review on the test system
- 12:47 PM bug #9641 (Resolved): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- Applied in changeset commit:cdm-vaadin|830b420d4d141be5056606b0524e0706c62f3f87.
- 12:45 PM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- Test System
Genus = Sabbea (published, orig. des.) --> open NameTypeDesignation Editor
~~~
Caused by: org.hi... - 06:58 PM feature request #6718: Constistent TypeDesignation representation creation
- not related to a target version
- 06:54 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- "Data" tickets are usually not related to a target version once they are fixed. Therefore I remove it.
- 05:05 PM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- please review
- 05:05 PM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- The method countMedia and getMedia in OccurrenceImpl was not correctly updated after media was removed from SpecimenO...
- 05:01 PM bug #9642 (Resolved): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Applied in changeset commit:cdmlib|d6a8517c4b8892a03e449dfe3c751036ee570bd6.
- 02:00 PM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- ~~~
12:55:00.629 [flora-malesiana] [qtp1511785794-17712] INFO e.e.c.r.c.DerivedUnitFacadeController - doGetFieldObj... - 05:01 PM Revision d6a8517c (cdmlib): fix #9642 fix countMedia and getMedia in OccurrenceDaoHibernateImpl
- 04:37 PM Revision 2daf0f0b (taxeditor): ref #9630: setEnabled to source section
- 04:00 PM Revision 093e7cd5 (taxeditor): ref #8776, #9630: d&d from voc to tree and disable time period if fact is disabled
- 03:53 PM Revision 9020f8ff (cdmlib): ref #8776: add all terms of the hierarchy to the list of the treeDto
- 03:20 PM Revision 9398c95d (taxeditor): cleanup
- 12:47 PM Revision 830b420d (cdm-vaadin): fix #9641 adding init strategy for typifiedNames.nomenclaturalSource.citation
- 12:05 PM Revision 33f8af3e (taxeditor): ref #9630: default value for enable description element source is true
- 11:57 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- New Ticket: #9640
- 11:57 AM feature request #9640 (New): Updated List ICN/ICBN editions
- As a first step, here is an update for the list.
This is a follow-up to ticket #9618
The new list is based on the... - 10:36 AM Revision 13555b11 (taxeditor): ref #9630: fix time period disabling and supplemental data enabling
- 10:16 AM bug #9638 (Closed): remove trailing full stops from reference titleCaches
- 10:16 AM feature request #9639 (Closed): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 09:39 AM feature request #9639 (Resolved): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 09:50 AM Revision bfcdd64e (taxeditor): ref #8776: fix d&d check for duplicates
- 09:10 AM Revision 436645ad (taxeditor): ref #8952: adapt labels for open in menu to dataset
- 08:45 AM Revision e7075148 (cdm-dataportal): adapting to recent reference cache strategy changes
05/31/2021
- 10:54 PM Revision 621a4c45 (cdmlib): ref #9639 make NomenclaturalSourceFormatter serializable
- 10:30 PM Revision 71be5a6e (cdmlib): ref #9639 replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 10:28 PM feature request #9639 (Closed): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 10:23 PM bug #9638 (Resolved): remove trailing full stops from reference titleCaches
- 04:00 PM bug #9638 (Closed): remove trailing full stops from reference titleCaches
- 06:18 PM Revision d0d49268 (cdmlib): passing missing maxDepth parameter
- 04:58 PM task #9291 (Closed): Clear all unnecesary TypeDesignation.citation entities and citationDetails
- 1760 cases cleaned
- 04:38 PM bug #9368 (Closed): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
- tested at http://test.e-taxonomy.eu/cdmserver/cichorieae/iiif/taxon/aecd40ae-b77d-495b-a63f-a294c8287089/manifest?typ...
- 02:25 PM bug #9368 (Resolved): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
- Applied in changeset commit:cdmlib|7d7ffcf03bdb83d494cc09fdbd1c715353b634cd.
- 04:35 PM bug #9635 (Closed): LazyInitializationException (LIE) in TaxonPortalContoller
- works: http://test.e-taxonomy.eu/cdmserver/cichorieae/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=...
- 01:56 PM bug #9635 (Resolved): LazyInitializationException (LIE) in TaxonPortalContoller
- Applied in changeset commit:cdmlib|1502b93925149b7602fbc039d141ea2faf234af1.
- 04:19 PM Revision 19617222 (cdmlib): ref #9638 remove trailing dots from ref caches (cont.)
- 04:02 PM Revision 02802740 (cdmlib): ref #9638 remove trailing dots from ref caches
- 04:02 PM Revision beab3950 (cdmlib): ref #3764 correct handling of series and volume for section with journal
- 04:02 PM Revision 2300c416 (cdmlib): cleanup
- 04:02 PM Revision b3ef6288 (cdmlib): add memory warning to report in long running tasks
- 04:02 PM Revision b1f26557 (cdmlib): cleanup
- 03:47 PM Revision e7849426 (taxeditor): ref #8776: revert d&d check for duplicates
- 03:47 PM Revision b208934b (taxeditor): ref #8776: paste should only available if it is allowed.
- 03:13 PM Revision 4c59df2f (cdmlib): renaming local vars pageNumber -> pageIndex
- 03:13 PM task #9637 (New): overcome mixed use of pageNumber and pageIndex
- some controller methods are still using "pageNumber".
This should be replaces in all cases by "pageIndex"
Adapt... - 03:05 PM bug #9151 (Closed): invalid pager information in /description/namedAreasInUse webservice
- 02:51 PM bug #9151 (Resolved): invalid pager information in /description/namedAreasInUse webservice
- Applied in changeset commit:cdmlib|b5ddcca9e3953f3fa88188e6f28e171bd40bdf96.
- 02:51 PM Revision b5ddcca9 (cdmlib): fix #9151 fixing deprecated use of pageNumber
- 02:25 PM Revision 7d7ffcf0 (cdmlib): fix #9368 NullPointerException (NPE) in ManifestComposer
- 02:20 PM bug #9630 (Resolved): Make the handling of computed description configurable
- I think now it works, please review
- 01:56 PM Revision 1502b939 (cdmlib): fix #9635 #adding missing init strategy path for misapplications
- 01:06 PM bug #9398 (Closed): ObjectNotFoundException when removing a synonym that is used as NameInSource
- works as expected
- 12:47 PM Revision f736095f (taxeditor): cleanup
- 12:40 PM bug #9629 (Closed): Better handling of OptionalDataException
- This is difficult to review as I can't create the exception that shows if it works or not. However, the code looks ok...
- 12:35 PM Revision f2b0935d (taxeditor): ref #9629 adapting message string
- 12:35 PM Revision 909ec578 (taxeditor): cleanup
- 11:30 AM Revision f37fa367 (taxeditor): ref #8776: fix d&d for not allow duplicates
- 10:58 AM Revision b1d5c0e2 (taxeditor): ref #8776: disable allowDuplicate flag if tree contains duplicates
- 10:50 AM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
- most of the topics are already fixed in the meanwhile.
- 10:26 AM Revision 3d3a68f0 (taxeditor): ref #8476: disable flat flag if tree has subtrees
- 10:24 AM Revision 8acf6617 (cdmlib): ref #8476: add check for subtrees
- 09:45 AM Revision 5accd008 (cdm-dataportal): more secure location for backups
- 09:37 AM Revision e866a450 (taxeditor): ref #8476: do not allow d&d to a child
- 09:24 AM Revision 88b50562 (taxeditor): ref #8476: do not show create child if tree is flat
- 08:37 AM bug #9636 (Closed): NPE in DeterminationDetailElement
- Checked all kind of specimen and field unit and it worked as expected.
05/28/2021
- 08:34 PM bug #9636: NPE in DeterminationDetailElement
- Please review.
- 08:33 PM bug #9636 (Resolved): NPE in DeterminationDetailElement
- Applied in changeset commit:taxeditor|c7641204b013ae501d942505847201e7617d4d66.
- 08:30 PM bug #9636 (Closed): NPE in DeterminationDetailElement
- this is due to changes in CdmSectionPart.setFormInput() with commit 8aaabf5035f where derivedUnitFacade is replaced b...
- 08:33 PM Revision c7641204 (taxeditor): fix #9636 fix NPE in DeterminationDetailElement
- 08:33 PM Revision ac70dabe (taxeditor): cleanup and set cancelable to true SetXXXForSubtreeOperations
- 04:11 PM Revision 934b40da (cdm-dataportal): Merge branch 'develop' into support/5.23.1
- 04:07 PM Revision 32a930c7 (cdm-dataportal): updating README
- 03:57 PM Revision 6dc2f272 (cdm-dataportal): fixing bug in update script
- 03:33 PM Revision b2e56eb8 (cdm-dataportal): update script improved
- 03:21 PM Revision 05d5bae9 (cdm-dataportal): un pinning drupal/drupal version
- 02:59 PM Revision fd9f41ae (cdm-dataportal): update script improved
- 02:43 PM Revision a6c0342d (cdm-dataportal): update script improved
- 01:44 PM Revision 93513495 (cdm-dataportal): update script improved
- 12:57 PM Revision 173745e8 (cdm-dataportal): update script improved
- 12:00 PM Revision fab7562d (cdmlib): fix #9398: when delete synonym but name is not deletable, add name to updated objects
- 12:00 PM bug #9398 (Resolved): ObjectNotFoundException when removing a synonym that is used as NameInSource
- Applied in changeset commit:cdmlib|fab7562d10933769c27f26176f401cb92d75e234.
- 11:45 AM Revision e728e2eb (cdm-dataportal): adding update script
- 11:44 AM Revision c1f181ba (cdm-dataportal): update instructions continued
- 09:55 AM Revision 85f3df99 (taxeditor): ref #9630: avoid IAE continue
- 09:53 AM Revision 49fc34f0 (cdmlib): ref #9630: override toString()
- 09:02 AM bug #9630 (In Progress): Make the handling of computed description configurable
05/27/2021
- 04:06 PM bug #9635 (Closed): LazyInitializationException (LIE) in TaxonPortalContoller
- http://api.cybertaxonomy.org/euromed/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1&do...
- 03:55 PM bug #9634 (Closed): Update AgentBase and DescriptiveDataSet titleCache length where needed
- In some databases the AgentBase titleCache has only length 255, not 800. Also the DescriptiveDataSet titleCache has u...
- 03:29 PM Revision bac6e6b4 (taxeditor): ref #9629: handle OptionalDataException - continue
- 02:24 PM bug #9600 (In Progress): Delete of taxon with unselected name delete returns warning
- The exceptions where caused by the names of the synonyms (but there are more messages than synonyms, this needs to be...
- 12:02 PM Revision bc2df6ea (taxeditor): ref #9630: make computed descriptions handling configurable - avoid IAE
- 11:46 AM bug #9629 (Resolved): Better handling of OptionalDataException
- the exception is hanlded now, please review.
- 11:45 AM Revision ab79a3ac (taxeditor): ref #9629: handle OptionalDataException
- 11:12 AM bug #9630 (Resolved): Make the handling of computed description configurable
- this is fixed, please review.
- 10:47 AM Revision 7fcccab7 (taxeditor): ref #9630: make computed descriptions handling configurable - adapt content and label provider
- 10:45 AM Revision 12521139 (taxeditor): ref #9630: make computed descriptions handling configurable - adapt handler
05/26/2021
- 03:51 PM Revision 0ab60230 (taxeditor): ref #9630: make computed descriptions handling configurable
- 03:39 PM Revision 3012f271 (cdmlib): ref #9630: add PreferencePredicate for computed Descriptions
05/21/2021
- 06:26 PM Revision 7650207f (cdmlib-apps): adaptions to 5.23 and prior
- 06:04 PM Revision db6d83d6 (cdm-dataportal): pinning drupal version to 7.62 for testing
- 06:04 PM Revision 2776ab75 (cdm-dataportal): update instructions continued
- 02:55 PM bug #9588 (Closed): Specimen Tree View: Duplicate derivatives
- The link in the ticket description works now as expected so we can close this ticket.
- 11:45 AM Revision 53d2daf2 (cdmlib): ref #5573: remove resetTitleCache in setMedia()
- 11:43 AM Revision eb34070d (taxeditor): ref #5573: call resetTitleCache after changing media
- 11:36 AM Revision e47983d4 (cdmlib): minor cleanup
- 11:29 AM Revision ea53c256 (cdmlib): ref #9622 remove setTaskName and done from aggregate()
- 11:14 AM Revision f7182054 (cdmlib): minor
- 10:30 AM Revision 82fc2a40 (cdm-dataportal): cleaning up java-doc
- 10:30 AM Revision 61710aca (cdm-dataportal): updating release version in README and fixing typos
- 10:20 AM task #9576: Add tests for homotypic group name comparator
- Andreas Müller wrote:
> Does the unified HomotypicGroupTaxonComparator include the tests then?
There is not need ... - 10:12 AM task #9576: Add tests for homotypic group name comparator
- Does the unified HomotypicGroupTaxonComparator include the tests then?
- 09:15 AM task #9576 (Rejected): Add tests for homotypic group name comparator
- The HOmotypicalGroupNameCOmparator is not used anymore therefore I would remove it and close this ticket because we d...
- 09:17 AM Revision 26060d0d (cdmlib): ref #9576: delete HomotypicaGroupNameComparator
- 08:55 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > diese Liste dürfte vollständig sein https://www.iapt-taxon.or... - 08:01 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- looks like the final list is still missing
- 08:24 AM bug #9529: Correct formatting for bibliographic in-reference separation
- This was mostly done in 5.22
05/20/2021
- 06:09 PM Revision 4b04c212 (cdm-dataportal): Merge branch 'release/5.23.0' into develop
- 06:09 PM Revision 5f5c2f3e (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
- 06:09 PM Revision 7357c5a9 (cdm-dataportal): updating poms for branch'release/5.23.0' with non-snapshot versions
- 06:08 PM Revision f7a5c2ea (cdm-dataportal): release-preparation: production level css
- 06:04 PM Revision 4fb8f3fe (cdm-dataportal): updating poms for 5.24.0-SNAPSHOT development
- 06:00 PM Revision 49f7cc43 (cdm-dataportal): fixing little probelms in README
- 06:00 PM Revision e34c07ee (cdm-dataportal): update ducumentation in README completed
- 06:00 PM Revision 9237c9bb (cdm-dataportal): also preserving the profiles folder
- 05:54 PM Revision 8ebc313f (cdm-dataportal): release-preparation: production level css
- 05:52 PM Revision 9f4bb2ee (cdm-dataportal): release-preparation: production level css
- 05:49 PM Revision b752bc04 (cdm-server): Merge branch 'release/5.23.0' into develop
- 05:49 PM Revision 82603df9 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 05:49 PM Revision 97435cda (cdm-server): updating poms for branch'release/5.23.0' with non-snapshot versions
- 05:13 PM Revision 7d8aa7ff (cdm-webapp): Merge branch 'release/5.23.0' into develop
- 05:13 PM Revision 64adf69d (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 05:12 PM Revision 7fb6814f (cdm-webapp): updating poms for branch'release/5.23.0' with non-snapshot versions
- 05:12 PM Revision f7bb7908 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.23.0
- 05:11 PM Revision f95fb91d (cdm-vaadin): Merge branch 'release/5.23.0' into develop
- 05:11 PM Revision 19e34159 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 05:09 PM Revision 2c2494af (taxeditor): Merge branch 'release/5.23.0' into develop
- 05:09 PM Revision 2445fd8d (taxeditor): Merge branch 'release/5.23.0'
- 05:07 PM Revision 65fed6f7 (cdm-vaadin): updating poms for branch'release/5.23.0' with non-snapshot versions
- 05:07 PM Revision a130cbb8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.23.0
- 05:07 PM Revision 1e450eef (cdmlib): Updating develop poms back to pre merge state
- 05:07 PM Revision ba73614b (cdmlib): Merge branch 'master' into develop
- 05:07 PM Revision 73e9f096 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 05:07 PM Revision 0637e4b1 (cdmlib): Merge branch 'release/5.23.0'
- 05:05 PM task #8081 (Closed): Complete removal of redmine communication hub instances
- removed all remains from
* edit-int
* edit-test
* edit-staging
* edit-com - 04:50 PM Revision fb75fb5a (cdm-dataportal): fixing little probelms in README
- 04:48 PM Revision 4e871f29 (cdmlib): updating poms for branch'release/5.23.0' with non-snapshot versions
- 04:43 PM Revision 7d081105 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.23.0-SNAPSHOT
- 04:43 PM Revision dabb33f2 (cdm-webapp): updating poms for 5.24.0-SNAPSHOT development
- 04:43 PM Revision 3ad9cd63 (cdm-webapp): updating poms for 5.23.0 branch with snapshot versions
- 04:43 PM Revision 6a0e0d04 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.24.0-SNAPSHOT
- 04:41 PM Revision 119ce179 (cdm-vaadin): jenkins bumping cdmlib.version to 5.23.0-SNAPSHOT
- 04:41 PM Revision 5b8b67c7 (cdm-vaadin): updating poms for 5.24.0-SNAPSHOT development
- 04:41 PM Revision 0c43eb5d (cdm-vaadin): updating poms for 5.23.0 branch with snapshot versions
- 04:41 PM Revision d610e81a (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 04:39 PM Revision c3dc5ecc (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 04:27 PM Revision 187ac0a5 (cdm-vaadin): jenkins bumping cdmlib.version to 5.23.0-SNAPSHOT
- 04:27 PM Revision a5f30f1e (cdm-vaadin): updating poms for 5.24.0-SNAPSHOT development
- 04:27 PM Revision 175f280a (cdm-vaadin): updating poms for 5.23.0 branch with snapshot versions
- 04:26 PM Revision 2422d4a6 (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 04:25 PM Revision 9bbaa6e5 (taxeditor): Updated version in pom / project files to taxeditor version : 5.24.0-SNAPSHOT and cdmlib version : 5.24.0-SNAPSHOT
- 04:25 PM Revision 035e7f49 (taxeditor): Updated version in pom / project files to taxeditor version : 5.23.0 and cdmlib version : 5.23.0
- 04:18 PM Revision a7b308fd (cdm-dataportal): update ducumentation in README completed
- 04:18 PM Revision f3e7520d (cdm-dataportal): also preserving the profiles folder
- 03:24 PM Revision f16d2d87 (taxeditor): Updated version in pom / project files to taxeditor version : 5.23.0 and cdmlib version : 5.23.0
- 03:23 PM Revision 1d619904 (cdm-vaadin): updating poms for 5.24.0-SNAPSHOT development
- 03:23 PM Revision 0f58ba12 (cdm-vaadin): updating poms for 5.23.0 branch with snapshot versions
- 03:23 PM Revision 73fddc8c (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 03:23 PM Revision ae7f8450 (cdm-dataportal): updating poms for 5.24.0-SNAPSHOT development
- 03:23 PM Revision 10275ddb (cdm-server): updating poms for 5.24.0-SNAPSHOT development
- 03:20 PM Revision 97b9f1f3 (cdmlib): updating poms for 5.24.0-SNAPSHOT development
- 03:20 PM Revision c2938224 (cdmlib): updating poms for 5.23.0 branch with snapshot versions
- 03:18 PM Revision 3a6a121a (cdm-dataportal): restoring drupal version
- 03:17 PM Revision 0dfee367 (cdm-dataportal): update instructions continued
- 03:09 PM feature request #5573 (Closed): Cache Strategy for Media Specimen required
- tested the workaround on nightly and it worked as expected.
- 03:04 PM feature request #5573: Cache Strategy for Media Specimen required
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The failing test is fixed now (titleCa... - 12:07 PM feature request #5573: Cache Strategy for Media Specimen required
- Katja Luther wrote:
> Andreas Müller wrote:
> > The failing test is fixed now (titleCache is set to null and a prop... - 11:35 AM feature request #5573: Cache Strategy for Media Specimen required
- Andreas Müller wrote:
> The failing test is fixed now (titleCache is set to null and a property change event is thro... - 03:04 PM feature request #9326 (Closed): Show all authors in bibliographic references
- I guess this can be closed as it is about team formatting and full stop separation which both is fixed.
Open issues ... - 10:08 AM feature request #9326 (Feedback): Show all authors in bibliographic references
- Wolf-Henning Kusber wrote:
> Habe die Beispiele angeschaut, Uptdate der Caches war notwendig.
> Fast alles ist jetz... - 08:54 AM feature request #9326: Show all authors in bibliographic references
- https://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/reference/843e5544-2081-4547-98aa-418db8fb1f85
- 02:37 PM Revision 784f80e6 (cdmlib): ref #5573: reset titleCache for setMedia in mediaSpecimen
- 01:19 PM Revision 738b5b05 (taxeditor): cleanup
- 01:17 PM Revision 7357605f (taxeditor): ref #5573: setMedia for media changes in MediaSpecimenDetailElement
- 12:49 PM Revision cd37bc26 (cdmlib): ref #9326, ref #3764 fix secion in book-section handling and some cleanup in ReferenceDefaultCacheStrategy (cont.)
- 12:48 PM Revision 1c5d9ea6 (cdmlib): cleanup
- 12:30 PM Revision 61157129 (cdmlib): ref #9326, ref #3764 fix secion in book-section handling and some cleanup in ReferenceDefaultCacheStrategy
- 12:05 PM Revision 2edaaec5 (cdm-dataportal): pinning drupal version to 7.62 for testing
- 11:13 AM Revision 9a339764 (cdm-dataportal): fixing composer version number of drupal/zen
- 11:13 AM Revision e4a638b8 (cdm-dataportal): update instructions continued
- 10:53 AM Revision aae4944c (cdm-dataportal): fixing composer version number of drupal/zen
- 10:50 AM Revision 490421a2 (cdm-dataportal): update instructions continued
- 09:58 AM Revision 4605409b (cdmlib): ref #9326 fix missing article title for section in title (cont.)
- 09:46 AM Revision 83aa4bc1 (cdmlib): ref #9326, ref #3764 fix missing article title for section in title and add according test (cont.)
- 09:44 AM Revision 45aa81d7 (cdmlib): ref #9326, ref #3764 fix missing article title for section in title and add according test
05/19/2021
- 05:38 PM feature request #5573: Cache Strategy for Media Specimen required
- The failing test is fixed now (titleCache is set to null and a property change event is thrown). However, as the even...
- 05:12 PM Revision ac9d4d38 (cdm-dataportal): README: first update instructions
- 05:10 PM Revision 01d32cbd (cdmlib): ref #9632, ref #5573 fix titleCache update in Media with workaround (not aspectj yet) (cont.)
- 04:50 PM bug #9629: Better handling of OptionalDataException
- The general problem was reported in #9358 already.
- 12:52 PM bug #9629: Better handling of OptionalDataException
- I guess this is fast to implement as we only need to search for "java.io.OptionalDataException" in the stacktrace.
A... - 12:31 PM bug #9629 (In Progress): Better handling of OptionalDataException
- This exception should be handled and the user should be informed to restart the editor.
~~~ text
last remote meth... - 04:48 PM feature request #9326: Show all authors in bibliographic references
- Habe die Beispiele angeschaut, Uptdate der Caches war notwendig.
Fast alles ist jetzt gut umgesetzt. 19.05.2021
E... - 04:29 PM Revision a8990cda (taxeditor): fix compile errors for putDescription
- 03:29 PM Revision 10ab27cc (cdmlib): ref #9632, ref #5573 fix titleCache update in Media with workaround (not aspectj yet)
- 03:26 PM Revision 64fa0c3c (cdmlib): cleanup
- 03:25 PM Revision 0f6b5dda (cdmlib): ref #6359, ref #9627 fix tests for setSecundumForSubtree workaround
- 03:12 PM bug #9633 (New): startup option to create an initial classfication
- To be implemented into `FirstDataInserter`
in case `createInitialClassification` is `true` and there is no classif... - 03:04 PM bug #9632 (New): Handle putXXX and remove with aspectj where necessary
- See e.g. TODO in Media.putTitle()
- 02:54 PM Revision ac5db269 (cdmlib): ref #9627 workaround for update result including taxonBase in setSecundumForSubtree
- 02:53 PM Revision 0e227b90 (cdmlib): ref #6427 add in doc
- 02:14 PM task #9607 (Closed): read image metadata from MediaInfoService if available
- 01:27 PM feature request #8471 (Closed): Computed descriptions should be disabled in TaxEditor
- New tickets created.
- 01:06 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- This ticket can be closed once the new 2 tickets are created.
- 01:06 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- >Another issue is that sections can be opened now. E.g. if there is an annotation I can't see it's content as I can't...
- 12:59 PM feature request #8471 (Feedback): Computed descriptions should be disabled in TaxEditor
- The UUID and ID fields can not be copied anymore. In general it might be a good idea not to fully disable fields but ...
- 01:26 PM bug #9631 (New): New implementation for disable details/supplemental data views
- from #8471:
The UUID and ID fields can not be copied anymore. In general it might be a good idea not to fully disa... - 01:24 PM bug #9630 (Closed): Make the handling of computed description configurable
- from #8471:
This ticket is not meant to completely make the computed descriptions invisible. By default they shoul... - 01:12 PM bug #9587 (Closed): Unsaved changes are lost when trying to open a taxon a second time
- Katja Luther wrote:
> Andreas Müller wrote:
> > This does not seem to work if a taxon is used multiple times. E.g. ... - 12:47 PM Revision cb89a368 (cdmlib): ref #9607 using parallel stream to collect metadata for IIIF manifest
- 12:25 PM feature request #9622: Improve remoting progress monitor handling
- Andreas Müller wrote:
> >bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View z... - 12:52 AM feature request #9622: Improve remoting progress monitor handling
- >bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View zeigt er "No subtask name"...
- 11:50 AM Revision 155b3863 (cdmlib): ref #5573: adapt test
- 11:24 AM bug #6427: Improve Matching for Reference.title and abbrevTitle
- This is not so urgent anymore since we have the MatchStrategyFactory and especially the ParsedXxxMatchers. However, f...
- 10:58 AM feature request #8789: How can we semantically handle characters like "partial inflorescence arrangement - distance 1st to 2nd bract"
- AM:
Is this still an open issue? Is it urgent?
NoK:
für derlei Fälle habe ich in den letzten Monaten (bei Lactucin... - 10:57 AM task #6284 (Closed): media.bgbm.org available via https
- Meanwhile, the media servers functionality has moved to https://image.bgbm.org/ and https://pictures.bgbm.org/
Both ... - 10:52 AM task #6284 (Feedback): media.bgbm.org available via https
- Is this still an open issue? I think we do not receive media from https://media.bgbm.org/erez/ anymore but I may be w...
- 10:55 AM feature request #6929 (Feedback): handling of misapplied names without accepted name
- Is this still an open issue. The ticket is 3 years old and I guess it is fixed but I am not sure if I understand the ...
- 10:33 AM bug #6359 (Closed): Remaining issues secundum for subtrees
- Also created a new ticket for better update result handling: #9628
So we can close this ticket now. - 10:27 AM bug #6359: Remaining issues secundum for subtrees
- Created a follow-up ticket #9627 for correct update result handling on editor side
- 10:31 AM task #9628 (New): Improve update result handling for monitored operations
- Currently it is handled in AbstractUtility.createUpdateResultReport() since #6359.
Probably we should try to unify... - 10:29 AM Revision e82d1be9 (taxeditor): cleanup
- 10:19 AM bug #9627 (New): Handle updated objects correctly in monitored operations in taxeditor
- Currently in AbstractUtility.executeMoniteredOperation()
~~~
Set<Taxon> taxaToUpdate = getTaxaToUpdate(firstRemot... - 10:19 AM Revision aa6e8f47 (cdm-dataportal): adapting tests to new refenence cache strategy
- 10:07 AM Revision 0f89d975 (taxeditor): cleanup
- 08:45 AM feature request #9611 (Closed): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > Can we have more space between Pro Parte... - 08:42 AM Revision b2beda87 (taxeditor): ref #9611: more space between the specific and the general flags
- 08:09 AM Revision 1aabfe1b (cdmlib): fix count for cache updater progress monitor
- 12:45 AM Revision 809fcc17 (cdmlib): ref #9622, ref #6359, #8871 adapt progress monitoring for description aggregation
- 12:37 AM Revision f30091c2 (cdmlib): cleanup
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