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From 05/16/2021 to 06/14/2021

06/12/2021

11:53 AM bug #9649 (Resolved): Specimens sometimes have empty titleCache instead of class<UUID>
Set to resolved in case #9665 fixed the issue. Andreas Müller
11:48 AM task #9030 (Closed): Import flowering periods for Cyprus
Import did run. Some manual adaptations needed to be done by RH:
~~~
Taxon uuid has incorrect format. Taxon could...
Andreas Müller
11:46 AM task #9030 (Resolved): Import flowering periods for Cyprus
Applied in changeset commit:cdmlib|43f0d97d9fbc3760be1fbd0d320f3cea94d67706. Andreas Müller
11:42 AM feature request #9667 (New): Printversion for Keys
RH:
Schlüsselsicherung: Gibt es eigentlich eine irgendwie geartete Möglichkeit alle Zypern-Gattungs-Schlüssel in e...
Andreas Müller
12:17 AM feature request #9664 (In Progress): Add nomenclaturalTitleCache to TeamOrPersonBase
Andreas Müller

06/11/2021

04:59 PM task #9666 (Closed): cdm_tokens module
This module will provide Drupal tokens:
~~~
cdm:taxon_name
cdm:taxon_name:uninomial
cdm:taxon_name:epithet
~~~...
Andreas Kohlbecker
02:29 PM feature request #3223 (Feedback): data portal front end for free text search on occurrences
Is this ticket still needed for general use? Andreas Müller
02:26 PM task #3996 (Feedback): [Overview] Algaterra search functionality
Andreas Müller
02:15 PM task #3996: [Overview] Algaterra search functionality
It has been decided not to migrate AlgaTerra.
Should we keep this ticket somehow or close it?
Andreas Müller
02:25 PM task #3241 (Feedback): favicon for algaterra
Andreas Müller
02:25 PM task #3241: favicon for algaterra
Is this ticket stil needed? Andreas Müller
02:24 PM feature request #3444 (Feedback): Don't show empty General Tab
Should we keep this ticket and move it elsewhere or close it? Andreas Müller
02:14 PM task #9251: Specimenview path: better representation of RecordBasis
AT migration was not the correct target version. Andreas Müller
02:02 PM feature request #3347 (Feedback): services and REST service controller for molecular classes implemented
Is this still an open issue? If yes, we should move it to another milestone. Andreas Müller
01:35 PM bug #9649 (In Progress): Specimens sometimes have empty titleCache instead of class<UUID>
Maybe fixed by #9665 . Need to check after release if this still happens. Andreas Müller
01:24 PM bug #9665 (Resolved): Filter out property change event for created and updated and cacheStrategy
fixed, will be merged into develop with uml 5.25 Andreas Müller
01:20 PM bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
Currently these events (created and updated) are fired by the CdmPreDataChange Listener which results in setting titl... Andreas Müller
01:13 PM bug #7817 (Duplicate): Team caches should not show '& al.'
duplicates #9326, #9464 and #9624 Andreas Müller
09:57 AM feature request #9655 (Resolved): When adding a new team member open search dialogue immediately
this is fixed now, please review. Katja Luther

06/10/2021

03:42 PM feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
Similar to collectorTitle(Cache) we need a cache for nomenclaturalTitle in Person, too.
This is to make it possible ...
Andreas Müller
10:53 AM bug #9663: Remove additional text from media title
please review. Katja Luther
10:52 AM bug #9663 (Resolved): Remove additional text from media title
Applied in changeset commit:cdmlib|e3e87f678eff890bf1f0f478d4973a0b0e6f70de. Katja Luther
10:30 AM bug #9663 (Closed): Remove additional text from media title
mail NK:
Könnte nicht von vornherein dafür gesorgt werde, dass bei der Generierung des Bilddatenamens im "Titel"-C...
Katja Luther
09:44 AM bug #9662 (New): CDMLight: Output should summarize all MAN with same name and err. sec
mail WB:
Aber hierzu noch der Wunsch, dass die MAN-sensu Referenzen zusammengefasst werden, wenn der Name und die ...
Katja Luther
09:36 AM bug #9661 (New): Add possibility to clone a MAN
As long as it is not possible to add more than one sensu reference to a MAN, the users need to add more than one MAN ... Katja Luther
08:42 AM feature request #9270: show original spelling on taxon page
Andreas Müller wrote:
> should we close this as duplicate (for #7781)?
??
Andreas Müller

06/09/2021

07:08 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
Andreas Müller wrote:
> Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesi...
Andreas Müller
03:44 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesiana-prospective/cdm_datap... Andreas Müller
03:42 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
I checked in old databases from 12_2020 (before nomenclatural sources movement) and 04_2021 (before deleting old Taxo... Andreas Müller
01:41 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
Strange is, this problem exists only in flora_malesiana_prospective. In no other production database such duplicate r... Andreas Müller
01:25 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
But there are multiple nomSources that link to the same name:
~~~
SELECT *
FROM OriginalSourceBase osb
WHERE o...
Andreas Müller
01:15 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
I tested by calling
~~~
appCtr.getOccurrenceService().findRootUnitDTOs(UUID.fromString("2debf5ee-cb57-40bc-af89-1...
Andreas Müller
05:51 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
I will implement the update script now so we also need the fields in taxeditor Andreas Müller
01:32 PM feature request #9655: When adding a new team member open search dialogue immediately
The classes which are involved in creating the new element are:
AbstractUnboundEntityCollectionSection.java and Te...
Katja Luther
10:31 AM feature request #9655: When adding a new team member open search dialogue immediately
Andreas Müller wrote:
> Katja Luther wrote:
> > This is not as easy as it seems because the framework of these coll...
Katja Luther
10:12 AM feature request #9655: When adding a new team member open search dialogue immediately
Katja Luther wrote:
> This is not as easy as it seems because the framework of these collection details views bases ...
Andreas Müller
10:07 AM feature request #9655 (In Progress): When adding a new team member open search dialogue immediately
This is not as easy as it seems because the framework of these collection details views bases on creating a dummy ele... Katja Luther
12:33 PM bug #9660 (New): Define which namerelationships are shown and with which label in DB preference
Preferences for Namerelationshipship output should contain informations about:
* which relationships should be sho...
Katja Luther
11:17 AM feature request #9647: After deduplication the remaining record should get the focus in bulk editor
This should be fixed, please review. Katja Luther
11:13 AM feature request #9647 (Resolved): After deduplication the remaining record should get the focus in bulk editor
Applied in changeset commit:taxeditor|5924653e4dd6d9ae695675b7ee5a6f98856a9199. Katja Luther
08:55 AM task #9659 (Closed): External Links Module reimplemented for flexible configuration
The links in the *External Links Module* are hard-coded. Adding or changing links always involves developers to take ... Andreas Kohlbecker

06/08/2021

08:45 PM task #9650: Update all titleCaches after upgrade of cache strategies and formatters
Updated all databases except for col, euromed, euromed_caucasus and vibrant_index names/taxa/specimen Andreas Müller
05:46 PM task #9364 (Closed): Cleanup authors with multiple & and protected names and teams
protected (title)caches moved to new ticket #9658.
All "multiple &" solved.
Potentially dangerous protected cac...
Andreas Müller
05:43 PM task #9658: Cleanup authors with protected names and authors
Protected Teams(nomenclaturalTitle):
AlgaTerra: >14000
Cichorieae: 8487
Cuba: 14
Campanula: 1171
Caryo_amaranth: 113...
Andreas Müller
05:43 PM task #9658: Cleanup authors with protected names and authors
Protected Names (still without fulltitlecache and authorshipcache):
Bromeliaceae: 584
Cichorieae: 476
Cuba: 567
Camp...
Andreas Müller
05:42 PM task #9658 (New): Cleanup authors with protected names and authors
copied from #9364
In some databases there are many names with protected caches which may lead to problems when sea...
Andreas Müller
03:52 PM bug #9657 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51

http://api.cybertaxonomy.org/flora-malesiana-prospective/portal/taxon/2debf5ee-cb57-40bc-af89-173d1d17cefe/rootUnit...
Andreas Kohlbecker
11:44 AM bug #9651: After creating a new MAN the details view is filled with other MAN
This problem was caused by setting the focus everytime the name editor is refreshed and all containers are redrawed. ... Katja Luther
11:39 AM bug #9651 (Resolved): After creating a new MAN the details view is filled with other MAN
Applied in changeset commit:taxeditor|1b62813be8ba0f6f5cde2384147c62f0c913f1b6. Katja Luther
11:40 AM bug #9654: Deleting a synonym which has no name throws exception
this should be fixed with the last commit, please review. Katja Luther
09:17 AM bug #9654 (Resolved): Deleting a synonym which has no name throws exception
Applied in changeset commit:cdmlib|0bc2d77330a70a6115316b914b952657f990c624. Katja Luther
11:31 AM bug #9656 (New): Closing the referencing objects view should cancel the current request
Sometimes request take long because a record has many referencing objects. The easiest way to stop this seems to be c... Andreas Müller
08:52 AM feature request #9655 (Closed): When adding a new team member open search dialogue immediately
Currently one has to first push the +-button and then the search button but the search button is the only button to p... Andreas Müller

06/07/2021

10:06 PM bug #9654 (Closed): Deleting a synonym which has no name throws exception
When deleting a synonym (maybe also a taxon) an undefined exception is thrwon "Error thrown but no associated excepti... Andreas Müller
05:22 PM bug #9358: OptionalDataException during HTTP invoker call
Auch bei Cuba trat das Problem jetzt wieder bei der Eingabe von **Verbreitungsdaten** auf:
~~~
WGB:
erster Ein...
Andreas Müller
04:51 PM bug #9629: Better handling of OptionalDataException
You could e.g. recursively iterate through exception e and its causes e.getCause() and check all these exceptions for... Andreas Müller
04:45 PM bug #9629: Better handling of OptionalDataException
For testing you could manually throw an OptionalDataException and try to catch it correctly. Andreas Müller
04:43 PM bug #9629 (Feedback): Better handling of OptionalDataException
Reopen this ticket. Using toString is incorrect method to check if an exception is in the stacktrace.
exception.to...
Andreas Müller
11:29 AM task #9653 (New): update system table with new installation profile name and location
The installation profile `CDM_Portal` has been renamed to `cdm_portal`. Now Drupal complains with a User warning: "Th... Andreas Kohlbecker
11:20 AM feature request #9652 (New): instances status report web service
For many devOp use cases it is important to know
* if all instances have been successfully started
This web ser...
Andreas Kohlbecker
10:07 AM bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
mail WB:
Hallo,
es geht um die EIngabe eines MAN mit dem gleichen Namen wie ein bereits bestehender MAN (derzeit...
Katja Luther

06/04/2021

11:37 AM bug #9646 (In Progress): CDM Light: Add name relationship to concatenated string for homotypic group
implemented a first version analogue to portal implementation. Needs more discussion how to handle names also in syno... Katja Luther

06/03/2021

02:46 PM task #9650 (In Progress): Update all titleCaches after upgrade of cache strategies and formatters
Before the databases need to be checked for data dirty data which could be overwritten by cache update (e.g. referenc... Andreas Müller
01:48 PM bug #9649 (Closed): Specimens sometimes have empty titleCache instead of class<UUID>
E.g. in additiviy_ontology after running titleCache update for records 72 and 74 Andreas Müller
01:37 PM task #9648 (New): Remove duplicated extensions
In cichorieae (maybe also E+M) some reference records had a large number of similar extensions.
Most of them (in cic...
Andreas Müller
01:00 PM feature request #9647 (Closed): After deduplication the remaining record should get the focus in bulk editor
this is helpful when working on longer lists because after save the list jumps to the beginning otherwise Andreas Müller
10:39 AM feature request #8476 (Closed): Implement support for TermCollection.isFlat in TaxEditor
This seems to be fully fixed now. I move it back to 5.24 as it was fixed there.
Only open issue (menu) was moved to ...
Andreas Müller
08:23 AM bug #9646 (Closed): CDM Light: Add name relationship to concatenated string for homotypic group
mail WB:
Name relationships werden in der Konkatenierung der homotypischen Gruppen in CDM-Light nicht berücksichti...
Katja Luther
08:21 AM bug #9645 (Closed): CDM Light: Add Type Statement Reference to homotypicalGroup.csv
mail WB:
Hallo,
diese Referenz haben wir offenbar in homotypicGroup.csv vergessen. Die ist für Cuba ziemlich wich...
Katja Luther

06/02/2021

11:32 AM bug #9630 (Closed): Make the handling of computed description configurable
Code is cleaned up. I check the structured descriptions and create a new ticket if necessary. Katja Luther
10:41 AM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Done Andreas Kohlbecker
10:20 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> >
> > >I guess there is still a test to be adapted?
> >...
Andreas Müller
10:16 AM bug #9642 (Feedback): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Andreas Müller wrote:

>
> >I guess there is still a test to be adapted?
>
> whyt exactly do you mean?
Isn...
Andreas Kohlbecker
09:15 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
But I removed the order by from the media specimen sql. As this query always returns max 1 result order by is not nec... Andreas Müller
09:13 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Andreas Kohlbecker wrote:
> In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaI...
Andreas Müller
08:46 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaIds()` is sorted twice: fist b... Andreas Kohlbecker
10:17 AM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
Applied in changeset commit:taxeditor|57a53d78c9cac39492c450ea46b24dc207de55fc. Katja Luther
09:04 AM feature request #8476 (Resolved): Implement support for TermCollection.isFlat in TaxEditor
Andreas Müller wrote:
> Please also test for d&d from vocabulary editor. I have not tested yet.
With the last com...
Katja Luther
08:24 AM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
Andreas Kohlbecker

06/01/2021

10:40 PM bug #9630 (Resolved): Make the handling of computed description configurable
Works now as expected for distributions but needs to be tested for structured descriptions (open new ticket if necess... Andreas Müller
03:04 PM bug #9630: Make the handling of computed description configurable
Katja Luther wrote:
> Andreas Müller wrote:
> > The detail fields in timescope are still editable with "disabled"
...
Andreas Müller
02:48 PM bug #9630: Make the handling of computed description configurable
Andreas Müller wrote:
> The detail fields in timescope are still editable with "disabled"
In my local installatio...
Katja Luther
02:42 PM bug #9630: Make the handling of computed description configurable
Andreas Müller wrote:
> Andreas Müller wrote:
> > And supplemental data of *not*-computed dara are not editable wit...
Katja Luther
02:31 PM bug #9630: Make the handling of computed description configurable
Andreas Müller wrote:
> And supplemental data of *not*-computed dara are not editable with "disabled"
... but onl...
Andreas Müller
02:30 PM bug #9630: Make the handling of computed description configurable
And supplemental data of *not*-computed dara are not editable with "disabled" Andreas Müller
02:28 PM bug #9630: Make the handling of computed description configurable
The detail fields in timescope are still editable with "disabled" Andreas Müller
10:36 AM bug #9630: Make the handling of computed description configurable
Andreas Müller wrote:
> When "disabled" is selected, timescope is still editable (I have only checked distributions...
Katja Luther
10:05 AM bug #9630: Make the handling of computed description configurable
"Invisible" works as expected Andreas Müller
10:04 AM bug #9630: Make the handling of computed description configurable
When "disabled" is selected, timescope is still editable (I have only checked distributions no other descriptions) Andreas Müller
09:54 AM bug #9630 (Feedback): Make the handling of computed description configurable
When selection is "Enabled" the supplemental data and the sources are still disabled. Tested with rem_conf_am/->Speci... Andreas Müller
10:33 PM bug #9644 (Closed): fix NPE in term selection
works as expected. Andreas Müller
10:32 PM bug #9644 (Resolved): fix NPE in term selection
Applied in changeset commit:taxeditor|5bdd89de5a89aca16929c174a3f22e7f0680a4b1. Andreas Müller
10:30 PM bug #9644 (Closed): fix NPE in term selection
An NPE is thrown if a term is deselected in the term selection dialog for term tree items. Andreas Müller
10:15 PM feature request #8474 (Closed): Make TermCollection.orderRelevant usable for TermTrees
This seems to be completely fixed. Maybe you can find out when the last relevant commit was and attache the ticket to... Andreas Müller
10:11 PM bug #8776 (Closed): Open issues for TermCollection.allowDuplicates handling in TaxEditor
Seems to work as expected now. Andreas Müller
11:07 AM bug #8776 (Feedback): Open issues for TermCollection.allowDuplicates handling in TaxEditor
Everything works, only there is one open issue which was not yet on the list: d&d from a vocabulary is still possible... Andreas Müller
10:13 AM bug #8776 (Resolved): Open issues for TermCollection.allowDuplicates handling in TaxEditor
please review Katja Luther
09:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
Please also test for d&d from vocabulary editor. I have not tested yet. Andreas Müller
09:52 PM feature request #8476 (Feedback): Implement support for TermCollection.isFlat in TaxEditor
d&d is still available for moving a term to become a child of another term node. Instead the "is flat" flag is disabl... Andreas Müller
09:39 PM feature request #9643 (Rejected): New menu in term tree editor should have alternatives for flags
copied from #8476, #8474 (and #8776, not really mentioned there)
But as there are 3 flags there is a larger number...
Andreas Müller
07:32 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
opening, saving, editing is working without problems for new and old records. Ticket can be closed. Wolf-Henning Kusber
02:31 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
no errors yet, seems to be correct, but I need to check more examples. Wolf-Henning Kusber
12:57 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
please review on the test system Andreas Kohlbecker
12:47 PM bug #9641 (Resolved): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
Applied in changeset commit:cdm-vaadin|830b420d4d141be5056606b0524e0706c62f3f87. Andreas Kohlbecker
12:45 PM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
Test System
Genus = Sabbea (published, orig. des.) --> open NameTypeDesignation Editor
~~~
Caused by: org.hi...
Andreas Kohlbecker
06:58 PM feature request #6718: Constistent TypeDesignation representation creation
not related to a target version Andreas Müller
06:54 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
"Data" tickets are usually not related to a target version once they are fixed. Therefore I remove it. Andreas Müller
05:05 PM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
please review Andreas Müller
05:05 PM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
The method countMedia and getMedia in OccurrenceImpl was not correctly updated after media was removed from SpecimenO... Andreas Müller
05:01 PM bug #9642 (Resolved): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Applied in changeset commit:cdmlib|d6a8517c4b8892a03e449dfe3c751036ee570bd6. Andreas Müller
02:00 PM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
~~~
12:55:00.629 [flora-malesiana] [qtp1511785794-17712] INFO e.e.c.r.c.DerivedUnitFacadeController - doGetFieldObj...
Andreas Kohlbecker
11:57 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
New Ticket: #9640 Wolf-Henning Kusber
11:57 AM feature request #9640 (Closed): Updated List ICN/ICBN editions
As a first step, here is an update for the list.
This is a follow-up to ticket #9618
The new list is based on the...
Wolf-Henning Kusber
10:16 AM bug #9638 (Closed): remove trailing full stops from reference titleCaches
Andreas Müller
10:16 AM feature request #9639 (Closed): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
Andreas Müller
09:39 AM feature request #9639 (Resolved): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
Andreas Müller

05/31/2021

10:28 PM feature request #9639 (Closed): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
Andreas Müller
10:23 PM bug #9638 (Resolved): remove trailing full stops from reference titleCaches
Andreas Müller
04:00 PM bug #9638 (Closed): remove trailing full stops from reference titleCaches
Andreas Müller
04:58 PM task #9291 (Closed): Clear all unnecesary TypeDesignation.citation entities and citationDetails
1760 cases cleaned Andreas Kohlbecker
04:38 PM bug #9368 (Closed): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
tested at http://test.e-taxonomy.eu/cdmserver/cichorieae/iiif/taxon/aecd40ae-b77d-495b-a63f-a294c8287089/manifest?typ... Andreas Kohlbecker
02:25 PM bug #9368 (Resolved): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
Applied in changeset commit:cdmlib|7d7ffcf03bdb83d494cc09fdbd1c715353b634cd. Andreas Kohlbecker
04:35 PM bug #9635 (Closed): LazyInitializationException (LIE) in TaxonPortalContoller
works: http://test.e-taxonomy.eu/cdmserver/cichorieae/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=... Andreas Kohlbecker
01:56 PM bug #9635 (Resolved): LazyInitializationException (LIE) in TaxonPortalContoller
Applied in changeset commit:cdmlib|1502b93925149b7602fbc039d141ea2faf234af1. Andreas Kohlbecker
03:13 PM task #9637 (New): overcome mixed use of pageNumber and pageIndex
some controller methods are still using "pageNumber".
This should be replaces in all cases by "pageIndex"
Adapt...
Andreas Kohlbecker
03:05 PM bug #9151 (Closed): invalid pager information in /description/namedAreasInUse webservice
Andreas Kohlbecker
02:51 PM bug #9151 (Resolved): invalid pager information in /description/namedAreasInUse webservice
Applied in changeset commit:cdmlib|b5ddcca9e3953f3fa88188e6f28e171bd40bdf96. Andreas Kohlbecker
02:20 PM bug #9630 (Resolved): Make the handling of computed description configurable
I think now it works, please review Katja Luther
01:06 PM bug #9398 (Closed): ObjectNotFoundException when removing a synonym that is used as NameInSource
works as expected Andreas Müller
12:40 PM bug #9629 (Closed): Better handling of OptionalDataException
This is difficult to review as I can't create the exception that shows if it works or not. However, the code looks ok... Andreas Müller
10:50 AM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
most of the topics are already fixed in the meanwhile. Katja Luther
08:37 AM bug #9636 (Closed): NPE in DeterminationDetailElement
Checked all kind of specimen and field unit and it worked as expected. Katja Luther

05/28/2021

08:34 PM bug #9636: NPE in DeterminationDetailElement
Please review. Andreas Müller
08:33 PM bug #9636 (Resolved): NPE in DeterminationDetailElement
Applied in changeset commit:taxeditor|c7641204b013ae501d942505847201e7617d4d66. Andreas Müller
08:30 PM bug #9636 (Closed): NPE in DeterminationDetailElement
this is due to changes in CdmSectionPart.setFormInput() with commit 8aaabf5035f where derivedUnitFacade is replaced b... Andreas Müller
12:00 PM bug #9398 (Resolved): ObjectNotFoundException when removing a synonym that is used as NameInSource
Applied in changeset commit:cdmlib|fab7562d10933769c27f26176f401cb92d75e234. Katja Luther
09:02 AM bug #9630 (In Progress): Make the handling of computed description configurable
Katja Luther

05/27/2021

04:06 PM bug #9635 (Closed): LazyInitializationException (LIE) in TaxonPortalContoller
http://api.cybertaxonomy.org/euromed/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1&do... Andreas Kohlbecker
03:55 PM bug #9634 (Closed): Update AgentBase and DescriptiveDataSet titleCache length where needed
In some databases the AgentBase titleCache has only length 255, not 800. Also the DescriptiveDataSet titleCache has u... Andreas Müller
02:24 PM bug #9600 (In Progress): Delete of taxon with unselected name delete returns warning
The exceptions where caused by the names of the synonyms (but there are more messages than synonyms, this needs to be... Katja Luther
11:46 AM bug #9629 (Resolved): Better handling of OptionalDataException
the exception is hanlded now, please review. Katja Luther
11:12 AM bug #9630 (Resolved): Make the handling of computed description configurable
this is fixed, please review. Katja Luther

05/21/2021

02:55 PM bug #9588 (Closed): Specimen Tree View: Duplicate derivatives
The link in the ticket description works now as expected so we can close this ticket. Andreas Müller
10:20 AM task #9576: Add tests for homotypic group name comparator
Andreas Müller wrote:
> Does the unified HomotypicGroupTaxonComparator include the tests then?
There is not need ...
Katja Luther
10:12 AM task #9576: Add tests for homotypic group name comparator
Does the unified HomotypicGroupTaxonComparator include the tests then? Andreas Müller
09:15 AM task #9576 (Rejected): Add tests for homotypic group name comparator
The HOmotypicalGroupNameCOmparator is not used anymore therefore I would remove it and close this ticket because we d... Katja Luther
08:55 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > diese Liste dürfte vollständig sein https://www.iapt-taxon.or...
Andreas Kohlbecker
08:01 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
looks like the final list is still missing Andreas Müller
08:24 AM bug #9529: Correct formatting for bibliographic in-reference separation
This was mostly done in 5.22 Andreas Müller

05/20/2021

05:05 PM task #8081 (Closed): Complete removal of redmine communication hub instances
removed all remains from
* edit-int
* edit-test
* edit-staging
* edit-com
Andreas Kohlbecker
03:09 PM feature request #5573 (Closed): Cache Strategy for Media Specimen required
tested the workaround on nightly and it worked as expected. Katja Luther
03:04 PM feature request #5573: Cache Strategy for Media Specimen required
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The failing test is fixed now (titleCa...
Katja Luther
12:07 PM feature request #5573: Cache Strategy for Media Specimen required
Katja Luther wrote:
> Andreas Müller wrote:
> > The failing test is fixed now (titleCache is set to null and a prop...
Andreas Müller
11:35 AM feature request #5573: Cache Strategy for Media Specimen required
Andreas Müller wrote:
> The failing test is fixed now (titleCache is set to null and a property change event is thro...
Katja Luther
03:04 PM feature request #9326 (Closed): Show all authors in bibliographic references
I guess this can be closed as it is about team formatting and full stop separation which both is fixed.
Open issues ...
Andreas Müller
10:08 AM feature request #9326 (Feedback): Show all authors in bibliographic references
Wolf-Henning Kusber wrote:
> Habe die Beispiele angeschaut, Uptdate der Caches war notwendig.
> Fast alles ist jetz...
Andreas Müller
08:54 AM feature request #9326: Show all authors in bibliographic references
https://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/reference/843e5544-2081-4547-98aa-418db8fb1f85 Andreas Müller

05/19/2021

05:38 PM feature request #5573: Cache Strategy for Media Specimen required
The failing test is fixed now (titleCache is set to null and a property change event is thrown). However, as the even... Andreas Müller
04:50 PM bug #9629: Better handling of OptionalDataException
The general problem was reported in #9358 already. Andreas Müller
12:52 PM bug #9629: Better handling of OptionalDataException
I guess this is fast to implement as we only need to search for "java.io.OptionalDataException" in the stacktrace.
A...
Andreas Müller
12:31 PM bug #9629 (In Progress): Better handling of OptionalDataException
This exception should be handled and the user should be informed to restart the editor.
~~~ text
last remote meth...
Katja Luther
04:48 PM feature request #9326: Show all authors in bibliographic references
Habe die Beispiele angeschaut, Uptdate der Caches war notwendig.
Fast alles ist jetzt gut umgesetzt. 19.05.2021
E...
Wolf-Henning Kusber
03:12 PM bug #9633 (New): startup option to create an initial classfication
To be implemented into `FirstDataInserter`
in case `createInitialClassification` is `true` and there is no classif...
Andreas Kohlbecker
03:04 PM bug #9632 (New): Handle putXXX and remove with aspectj where necessary
See e.g. TODO in Media.putTitle() Andreas Müller
02:14 PM task #9607 (Closed): read image metadata from MediaInfoService if available
Andreas Kohlbecker
01:27 PM feature request #8471 (Closed): Computed descriptions should be disabled in TaxEditor
New tickets created. Katja Luther
01:06 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
This ticket can be closed once the new 2 tickets are created. Andreas Müller
01:06 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
>Another issue is that sections can be opened now. E.g. if there is an annotation I can't see it's content as I can't... Andreas Müller
12:59 PM feature request #8471 (Feedback): Computed descriptions should be disabled in TaxEditor
The UUID and ID fields can not be copied anymore. In general it might be a good idea not to fully disable fields but ... Andreas Müller
01:26 PM bug #9631 (New): New implementation for disable details/supplemental data views
from #8471:
The UUID and ID fields can not be copied anymore. In general it might be a good idea not to fully disa...
Katja Luther
01:24 PM bug #9630 (Closed): Make the handling of computed description configurable
from #8471:
This ticket is not meant to completely make the computed descriptions invisible. By default they shoul...
Katja Luther
01:12 PM bug #9587 (Closed): Unsaved changes are lost when trying to open a taxon a second time
Katja Luther wrote:
> Andreas Müller wrote:
> > This does not seem to work if a taxon is used multiple times. E.g. ...
Andreas Müller
12:25 PM feature request #9622: Improve remoting progress monitor handling
Andreas Müller wrote:
> >bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View z...
Katja Luther
12:52 AM feature request #9622: Improve remoting progress monitor handling
>bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View zeigt er "No subtask name"... Andreas Müller
11:24 AM bug #6427: Improve Matching for Reference.title and abbrevTitle
This is not so urgent anymore since we have the MatchStrategyFactory and especially the ParsedXxxMatchers. However, f... Andreas Müller
10:58 AM feature request #8789: How can we semantically handle characters like "partial inflorescence arrangement - distance 1st to 2nd bract"
AM:
Is this still an open issue? Is it urgent?
NoK:
für derlei Fälle habe ich in den letzten Monaten (bei Lactucin...
Andreas Müller
10:57 AM task #6284 (Closed): media.bgbm.org available via https
Meanwhile, the media servers functionality has moved to https://image.bgbm.org/ and https://pictures.bgbm.org/
Both ...
Andreas Kohlbecker
10:52 AM task #6284 (Feedback): media.bgbm.org available via https
Is this still an open issue? I think we do not receive media from https://media.bgbm.org/erez/ anymore but I may be w... Andreas Müller
10:55 AM feature request #6929 (Feedback): handling of misapplied names without accepted name
Is this still an open issue. The ticket is 3 years old and I guess it is fixed but I am not sure if I understand the ... Andreas Müller
10:33 AM bug #6359 (Closed): Remaining issues secundum for subtrees
Also created a new ticket for better update result handling: #9628
So we can close this ticket now.
Andreas Müller
10:27 AM bug #6359: Remaining issues secundum for subtrees
Created a follow-up ticket #9627 for correct update result handling on editor side Andreas Müller
10:31 AM task #9628 (New): Improve update result handling for monitored operations
Currently it is handled in AbstractUtility.createUpdateResultReport() since #6359.
Probably we should try to unify...
Andreas Müller
10:19 AM bug #9627 (New): Handle updated objects correctly in monitored operations in taxeditor
Currently in AbstractUtility.executeMoniteredOperation()
~~~
Set<Taxon> taxaToUpdate = getTaxaToUpdate(firstRemot...
Andreas Müller
08:45 AM feature request #9611 (Closed): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > Can we have more space between Pro Parte...
Katja Luther

05/18/2021

06:09 PM feature request #9611 (Feedback): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> Can we have more space between Pro Parte and Overwrite existing ... t...
Andreas Müller
06:00 PM feature request #9433 (Closed): Improve titleCache generation for misapplications
Andreas Müller
05:51 PM feature request #9433 (Resolved): Improve titleCache generation for misapplications
Applied in changeset commit:cdmlib|64223995926d2072cd149e408ec437c64c8c7603. Andreas Müller
03:22 PM bug #1924: CIHORIEAE in-references in Footnotes
The "publisher" issue (from attachement) was moved to new ticket #9626.
Only open issue: verbatim year
Andreas Müller
01:20 PM bug #6359: Remaining issues secundum for subtrees
So the progress monitor handling is fixed, we can close this ticket. A new ticket for user friendly result report and... Katja Luther
12:15 PM feature request #8471 (Resolved): Computed descriptions should be disabled in TaxEditor
Andreas Müller wrote:
> The description itself is not yet disabled in details view (but it is in suppl data view). T...
Katja Luther
12:02 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
Andreas Müller wrote:
> The "Types" field for ordinary descriptions is now enabled but shouldn't because it is read ...
Katja Luther
10:09 AM feature request #8471: Computed descriptions should be disabled in TaxEditor
Andreas Müller wrote:
> I think we should reenable the "delete" menu item as it should always be possible to remove ...
Katja Luther
09:04 AM feature request #8471: Computed descriptions should be disabled in TaxEditor
Andreas Müller wrote:
> The description itself is not yet disabled in details view (but it is in suppl data view). T...
Katja Luther
11:52 AM feature request #5573: Cache Strategy for Media Specimen required
Andreas Müller wrote:
> Katja Luther wrote:
> > Shouldn't the motif be part of the titlecache if no other field is ...
Katja Luther
12:10 AM task #9607 (Resolved): read image metadata from MediaInfoService if available
Andreas Kohlbecker

05/17/2021

06:05 PM bug #8521 (Duplicate): User details view: Change password button accessible for ROLE_USER_MANAGER
this is handled with #8925 Katja Luther
03:29 PM bug #6359: Remaining issues secundum for subtrees
Katja Luther wrote:
> I tried to adapt the progress monitor handling like for the cache update and the output in edi...
Andreas Müller
03:26 PM bug #6359: Remaining issues secundum for subtrees
I tried to adapt the progress monitor handling like for the cache update and the output in editor looks like this:
...
Katja Luther
03:00 PM bug #6359: Remaining issues secundum for subtrees

I think the usage of submonitors needs to be adapted, I already did this for cache update, there the submonitor lab...
Katja Luther
02:27 PM task #9624: Centralize team formatting and fix et al. position handling
AM: ... wird bei den err. sec. (und auch syn. sec. von pp-Synonymen) das „Kurzzitat“ noch mit >2 Autoren angezeigt. A... Andreas Müller
01:37 PM bug #9590 (Closed): ObjectDeletedException when swap synonym and accepted taxon
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also there is a looot of commented cod...
Katja Luther
01:35 PM bug #2969 (Closed): Correct formatting for bibliographic references
The cache strategies are split now (e.g. #9604). Examples for correct formatting bibliographic references are given i... Andreas Müller
01:24 PM feature request #9611 (Resolved): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Katja Luther wrote:
> > > > Andreas M...
Katja Luther
12:47 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > implement...
Andreas Müller
12:23 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > implemented. Please adapt UI.
> >
>...
Katja Luther
12:42 PM bug #9587 (Resolved): Unsaved changes are lost when trying to open a taxon a second time
Katja Luther
12:39 PM bug #9587: Unsaved changes are lost when trying to open a taxon a second time
Andreas Müller wrote:
> This does not seem to work if a taxon is used multiple times. E.g. if you search for "Sectes...
Katja Luther
11:06 AM bug #9588: Specimen Tree View: Duplicate derivatives
Andreas Kohlbecker wrote:
> I don't understand why you are changing the category, this clearly was a bug in cdmlib-s...
Andreas Müller
10:54 AM bug #9588: Specimen Tree View: Duplicate derivatives
I don't understand why you are changing the category, this clearly was a bug in cdmlib-services Andreas Kohlbecker
11:00 AM task #9623 (Closed): Remove TaxonBaseShortSecCacheStrategy
ok Katja Luther
10:58 AM feature request #7305 (Closed): [Dicuss] searching for authorteam with more than three members is incomplete
works as expected. Katja Luther
09:31 AM bug #9625 (Closed): Selection for team members does not filter on persons only
Andreas Müller
09:31 AM bug #9625 (Closed): Selection for team members does not filter on persons only
Andreas Müller
09:22 AM bug #9529 (Closed): Correct formatting for bibliographic in-reference separation
WGB: ich bin auf jeden Fall für das Komma!
NoK: Bin ... Walters Meinung
Andreas Müller

05/16/2021

11:53 PM feature request #2854 (Closed): Implement part of other title for part of articles and part of booksections
The possible open issue is not relevant anymore as BM imports are mostly done. Also the issue is logged in case it is... Andreas Müller
11:44 PM bug #9373 (Feedback): In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
Andreas Müller
 

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