Activity
From 05/04/2021 to 06/02/2021
06/02/2021
- 03:10 PM Revision 85326264 (taxeditor): ref #9448: remove E4 from file names - bulkeditor continue
- 03:06 PM Revision 865e32f6 (taxeditor): ref #9448: remove E4 from file names - adapt fragment.e4xmi
- 01:23 PM Revision 8a6625ad (taxeditor): ref #9448: remove E4 from file names - continue
- 01:20 PM Revision a6d3d9c5 (taxeditor): ref #9448: remove E4 from file names - supplementalDataView
- 01:16 PM Revision bbae6889 (taxeditor): ref #9448: remove E4 from file names - coninue and cleanup
- 12:47 PM Revision 45e18d0e (taxeditor): code cleaning
- 12:34 PM Revision 38e9eb06 (taxeditor): ref #9448: remove E4 from file names - cdmViewer
- 12:30 PM Revision 3eb83ba9 (cdm-dataportal): making ci scripts executable
- 12:30 PM Revision 1645f1e2 (taxeditor): ref #9448: remove E4 from file names - bulkeditor continue
- 12:27 PM Revision 843eefc4 (taxeditor): ref #9448: remove E4 from file names - bulkeditor package
- 12:24 PM Revision c47199f3 (cdm-dataportal): Merge branch 'release/5.24.0' into develop
- 12:24 PM Revision 85f6952f (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
- 12:24 PM Revision 4bb90f2f (cdm-dataportal): updating poms for branch'release/5.24.0' with non-snapshot versions
- 12:24 PM Revision 803fc583 (cdm-dataportal): release-preparation: production level css
- 12:13 PM Revision c58e5687 (cdm-dataportal): updating poms for 5.25.0-SNAPSHOT development
- 12:08 PM Revision fa228679 (taxeditor): ref #9448: remove E4 from file names - continue
- 12:04 PM Revision 2611dff9 (taxeditor): ref #9448: remove E4 from file names
- 11:50 AM Revision 0d88bbd4 (taxeditor): Merge branch 'release/5.24.0' into develop
- 11:50 AM Revision 031baf62 (taxeditor): Merge branch 'release/5.24.0'
- 11:48 AM Revision da969bb3 (cdm-dataportal): release-preparation: production level css
- 11:45 AM Revision 717af2aa (cdm-server): Merge branch 'release/5.24.0' into develop
- 11:45 AM Revision f780fcfc (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 11:44 AM Revision a2edd9ec (cdm-server): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:42 AM Revision ef93e952 (cdm-webapp): Merge branch 'release/5.24.0' into develop
- 11:42 AM Revision 13e17276 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 11:42 AM Revision 06c02838 (cdm-webapp): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:42 AM Revision c1e7bfd3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.24.0
- 11:42 AM Revision 36a499c6 (cdm-vaadin): Merge branch 'release/5.24.0' into develop
- 11:42 AM Revision 81415a2d (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 11:38 AM Revision ba1014bf (cdm-vaadin): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:37 AM Revision 13817a25 (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0
- 11:32 AM bug #9630 (Closed): Make the handling of computed description configurable
- Code is cleaned up. I check the structured descriptions and create a new ticket if necessary.
- 11:25 AM Revision 59fa4a9b (cdmlib): Updating develop poms back to pre merge state
- 11:25 AM Revision 3a298583 (cdmlib): Merge branch 'master' into develop
- 11:25 AM Revision 627867d1 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 11:25 AM Revision def9db7a (cdmlib): Merge branch 'release/5.24.0'
- 11:09 AM Revision 512616ce (cdmlib): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:06 AM Revision 6ab495c1 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.24.0-SNAPSHOT
- 11:06 AM Revision 1f268784 (cdm-webapp): updating poms for 5.25.0-SNAPSHOT development
- 11:06 AM Revision ff128f85 (cdm-webapp): updating poms for 5.24.0 branch with snapshot versions
- 11:05 AM Revision 463f5c7b (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.25.0-SNAPSHOT
- 11:03 AM Revision 2e85a104 (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 11:03 AM Revision 92e8e83e (cdm-vaadin): updating poms for 5.25.0-SNAPSHOT development
- 11:03 AM Revision 0ebe4a8b (cdm-vaadin): updating poms for 5.24.0 branch with snapshot versions
- 11:03 AM Revision abde3bb8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
- 10:59 AM Revision b43ac178 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
- 10:59 AM Revision 43e40bda (cdm-vaadin): jenkins bumping cdmlib.version to 5.26.0-SNAPSHOT
- 10:56 AM Revision d9d02bca (cdm-vaadin): updating poms for 5.25.0-SNAPSHOT development
- 10:56 AM Revision 8baba0a0 (cdm-vaadin): updating poms for 5.24.0 branch with snapshot versions
- 10:56 AM Revision e974b018 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
- 10:56 AM Revision 7fbd6a6c (cdm-server): updating poms for 5.25.0-SNAPSHOT development
- 10:56 AM Revision 37d8780f (cdm-dataportal): updating poms for 5.25.0-SNAPSHOT development
- 10:55 AM Revision 06b435a4 (taxeditor): Updated version in pom / project files to taxeditor version : 5.25.0-SNAPSHOT and cdmlib version : 5.25.0-SNAPSHOT
- 10:55 AM Revision 2ee57d46 (taxeditor): Updated version in pom / project files to taxeditor version : 5.24.0 and cdmlib version : 5.24.0
- 10:51 AM Revision ef97cad1 (cdmlib): updating poms for 5.25.0-SNAPSHOT development
- 10:41 AM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Done
- 10:20 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> >
> > >I guess there is still a test to be adapted?
> >... - 10:16 AM bug #9642 (Feedback): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Andreas Müller wrote:
>
> >I guess there is still a test to be adapted?
>
> whyt exactly do you mean?
Isn... - 09:15 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- But I removed the order by from the media specimen sql. As this query always returns max 1 result order by is not nec...
- 09:13 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Andreas Kohlbecker wrote:
> In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaI... - 08:46 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaIds()` is sorted twice: fist b...
- 10:40 AM Revision 678da343 (cdm-dataportal): ref #9642 adapting test method to more media appearing in the derivate path view
- 10:17 AM Revision 57a53d78 (taxeditor): fix #8476: fix paste not allowed for nodes if tree is flat
- 10:17 AM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
- Applied in changeset commit:taxeditor|57a53d78c9cac39492c450ea46b24dc207de55fc.
- 09:04 AM feature request #8476 (Resolved): Implement support for TermCollection.isFlat in TaxEditor
- Andreas Müller wrote:
> Please also test for d&d from vocabulary editor. I have not tested yet.
With the last com... - 10:09 AM Revision 02c718f2 (taxeditor): ref #8776: correct enable/disable allowDuplicates
- 10:08 AM Revision 37f2b410 (cdmlib): ref #8776: fix contains duplicates in dto
- 09:15 AM Revision 7c47b73f (cdmlib): ref #9642 remove unnecessary order by
- 09:01 AM Revision 12e7c169 (taxeditor): ref #8476: fix d&d in flat tree and cleanup
- 08:24 AM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
06/01/2021
- 10:40 PM bug #9630 (Resolved): Make the handling of computed description configurable
- Works now as expected for distributions but needs to be tested for structured descriptions (open new ticket if necess...
- 03:04 PM bug #9630: Make the handling of computed description configurable
- Katja Luther wrote:
> Andreas Müller wrote:
> > The detail fields in timescope are still editable with "disabled"
... - 02:48 PM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> The detail fields in timescope are still editable with "disabled"
In my local installatio... - 02:42 PM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> Andreas Müller wrote:
> > And supplemental data of *not*-computed dara are not editable wit... - 02:31 PM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> And supplemental data of *not*-computed dara are not editable with "disabled"
... but onl... - 02:30 PM bug #9630: Make the handling of computed description configurable
- And supplemental data of *not*-computed dara are not editable with "disabled"
- 02:28 PM bug #9630: Make the handling of computed description configurable
- The detail fields in timescope are still editable with "disabled"
- 10:36 AM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> When "disabled" is selected, timescope is still editable (I have only checked distributions... - 10:05 AM bug #9630: Make the handling of computed description configurable
- "Invisible" works as expected
- 10:04 AM bug #9630: Make the handling of computed description configurable
- When "disabled" is selected, timescope is still editable (I have only checked distributions no other descriptions)
- 09:54 AM bug #9630 (Feedback): Make the handling of computed description configurable
- When selection is "Enabled" the supplemental data and the sources are still disabled. Tested with rem_conf_am/->Speci...
- 10:33 PM bug #9644 (Closed): fix NPE in term selection
- works as expected.
- 10:32 PM bug #9644 (Resolved): fix NPE in term selection
- Applied in changeset commit:taxeditor|5bdd89de5a89aca16929c174a3f22e7f0680a4b1.
- 10:30 PM bug #9644 (Closed): fix NPE in term selection
- An NPE is thrown if a term is deselected in the term selection dialog for term tree items.
- 10:32 PM Revision 4334327a (taxeditor): cleanup
- 10:32 PM Revision 5bdd89de (taxeditor): fix #9644 fix NPE in term selection
- 10:15 PM feature request #8474 (Closed): Make TermCollection.orderRelevant usable for TermTrees
- This seems to be completely fixed. Maybe you can find out when the last relevant commit was and attache the ticket to...
- 10:11 PM bug #8776 (Closed): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Seems to work as expected now.
- 11:07 AM bug #8776 (Feedback): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Everything works, only there is one open issue which was not yet on the list: d&d from a vocabulary is still possible...
- 10:13 AM bug #8776 (Resolved): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- please review
- 09:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
- Please also test for d&d from vocabulary editor. I have not tested yet.
- 09:52 PM feature request #8476 (Feedback): Implement support for TermCollection.isFlat in TaxEditor
- d&d is still available for moving a term to become a child of another term node. Instead the "is flat" flag is disabl...
- 09:39 PM feature request #9643 (New): New menu in term tree editor should have alternatives for flags
- copied from #8476, #8474 (and #8776, not really mentioned there)
But as there are 3 flags there is a larger number... - 07:32 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- opening, saving, editing is working without problems for new and old records. Ticket can be closed.
- 02:31 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- no errors yet, seems to be correct, but I need to check more examples.
- 12:57 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- please review on the test system
- 12:47 PM bug #9641 (Resolved): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- Applied in changeset commit:cdm-vaadin|830b420d4d141be5056606b0524e0706c62f3f87.
- 12:45 PM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- Test System
Genus = Sabbea (published, orig. des.) --> open NameTypeDesignation Editor
~~~
Caused by: org.hi... - 06:58 PM feature request #6718: Constistent TypeDesignation representation creation
- not related to a target version
- 06:54 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- "Data" tickets are usually not related to a target version once they are fixed. Therefore I remove it.
- 05:05 PM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- please review
- 05:05 PM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- The method countMedia and getMedia in OccurrenceImpl was not correctly updated after media was removed from SpecimenO...
- 05:01 PM bug #9642 (Resolved): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Applied in changeset commit:cdmlib|d6a8517c4b8892a03e449dfe3c751036ee570bd6.
- 02:00 PM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- ~~~
12:55:00.629 [flora-malesiana] [qtp1511785794-17712] INFO e.e.c.r.c.DerivedUnitFacadeController - doGetFieldObj... - 05:01 PM Revision d6a8517c (cdmlib): fix #9642 fix countMedia and getMedia in OccurrenceDaoHibernateImpl
- 04:37 PM Revision 2daf0f0b (taxeditor): ref #9630: setEnabled to source section
- 04:00 PM Revision 093e7cd5 (taxeditor): ref #8776, #9630: d&d from voc to tree and disable time period if fact is disabled
- 03:53 PM Revision 9020f8ff (cdmlib): ref #8776: add all terms of the hierarchy to the list of the treeDto
- 03:20 PM Revision 9398c95d (taxeditor): cleanup
- 12:47 PM Revision 830b420d (cdm-vaadin): fix #9641 adding init strategy for typifiedNames.nomenclaturalSource.citation
- 12:05 PM Revision 33f8af3e (taxeditor): ref #9630: default value for enable description element source is true
- 11:57 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- New Ticket: #9640
- 11:57 AM feature request #9640 (New): Updated List ICN/ICBN editions
- As a first step, here is an update for the list.
This is a follow-up to ticket #9618
The new list is based on the... - 10:36 AM Revision 13555b11 (taxeditor): ref #9630: fix time period disabling and supplemental data enabling
- 10:16 AM bug #9638 (Closed): remove trailing full stops from reference titleCaches
- 10:16 AM feature request #9639 (Closed): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 09:39 AM feature request #9639 (Resolved): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 09:50 AM Revision bfcdd64e (taxeditor): ref #8776: fix d&d check for duplicates
- 09:10 AM Revision 436645ad (taxeditor): ref #8952: adapt labels for open in menu to dataset
- 08:45 AM Revision e7075148 (cdm-dataportal): adapting to recent reference cache strategy changes
05/31/2021
- 10:54 PM Revision 621a4c45 (cdmlib): ref #9639 make NomenclaturalSourceFormatter serializable
- 10:30 PM Revision 71be5a6e (cdmlib): ref #9639 replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 10:28 PM feature request #9639 (Closed): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 10:23 PM bug #9638 (Resolved): remove trailing full stops from reference titleCaches
- 04:00 PM bug #9638 (Closed): remove trailing full stops from reference titleCaches
- 06:18 PM Revision d0d49268 (cdmlib): passing missing maxDepth parameter
- 04:58 PM task #9291 (Closed): Clear all unnecesary TypeDesignation.citation entities and citationDetails
- 1760 cases cleaned
- 04:38 PM bug #9368 (Closed): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
- tested at http://test.e-taxonomy.eu/cdmserver/cichorieae/iiif/taxon/aecd40ae-b77d-495b-a63f-a294c8287089/manifest?typ...
- 02:25 PM bug #9368 (Resolved): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
- Applied in changeset commit:cdmlib|7d7ffcf03bdb83d494cc09fdbd1c715353b634cd.
- 04:35 PM bug #9635 (Closed): LazyInitializationException (LIE) in TaxonPortalContoller
- works: http://test.e-taxonomy.eu/cdmserver/cichorieae/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=...
- 01:56 PM bug #9635 (Resolved): LazyInitializationException (LIE) in TaxonPortalContoller
- Applied in changeset commit:cdmlib|1502b93925149b7602fbc039d141ea2faf234af1.
- 04:19 PM Revision 19617222 (cdmlib): ref #9638 remove trailing dots from ref caches (cont.)
- 04:02 PM Revision 02802740 (cdmlib): ref #9638 remove trailing dots from ref caches
- 04:02 PM Revision beab3950 (cdmlib): ref #3764 correct handling of series and volume for section with journal
- 04:02 PM Revision 2300c416 (cdmlib): cleanup
- 04:02 PM Revision b3ef6288 (cdmlib): add memory warning to report in long running tasks
- 04:02 PM Revision b1f26557 (cdmlib): cleanup
- 03:47 PM Revision e7849426 (taxeditor): ref #8776: revert d&d check for duplicates
- 03:47 PM Revision b208934b (taxeditor): ref #8776: paste should only available if it is allowed.
- 03:13 PM Revision 4c59df2f (cdmlib): renaming local vars pageNumber -> pageIndex
- 03:13 PM task #9637 (New): overcome mixed use of pageNumber and pageIndex
- some controller methods are still using "pageNumber".
This should be replaces in all cases by "pageIndex"
Adapt... - 03:05 PM bug #9151 (Closed): invalid pager information in /description/namedAreasInUse webservice
- 02:51 PM bug #9151 (Resolved): invalid pager information in /description/namedAreasInUse webservice
- Applied in changeset commit:cdmlib|b5ddcca9e3953f3fa88188e6f28e171bd40bdf96.
- 02:51 PM Revision b5ddcca9 (cdmlib): fix #9151 fixing deprecated use of pageNumber
- 02:25 PM Revision 7d7ffcf0 (cdmlib): fix #9368 NullPointerException (NPE) in ManifestComposer
- 02:20 PM bug #9630 (Resolved): Make the handling of computed description configurable
- I think now it works, please review
- 01:56 PM Revision 1502b939 (cdmlib): fix #9635 #adding missing init strategy path for misapplications
- 01:06 PM bug #9398 (Closed): ObjectNotFoundException when removing a synonym that is used as NameInSource
- works as expected
- 12:47 PM Revision f736095f (taxeditor): cleanup
- 12:40 PM bug #9629 (Closed): Better handling of OptionalDataException
- This is difficult to review as I can't create the exception that shows if it works or not. However, the code looks ok...
- 12:35 PM Revision f2b0935d (taxeditor): ref #9629 adapting message string
- 12:35 PM Revision 909ec578 (taxeditor): cleanup
- 11:30 AM Revision f37fa367 (taxeditor): ref #8776: fix d&d for not allow duplicates
- 10:58 AM Revision b1d5c0e2 (taxeditor): ref #8776: disable allowDuplicate flag if tree contains duplicates
- 10:50 AM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
- most of the topics are already fixed in the meanwhile.
- 10:26 AM Revision 3d3a68f0 (taxeditor): ref #8476: disable flat flag if tree has subtrees
- 10:24 AM Revision 8acf6617 (cdmlib): ref #8476: add check for subtrees
- 09:45 AM Revision 5accd008 (cdm-dataportal): more secure location for backups
- 09:37 AM Revision e866a450 (taxeditor): ref #8476: do not allow d&d to a child
- 09:24 AM Revision 88b50562 (taxeditor): ref #8476: do not show create child if tree is flat
- 08:37 AM bug #9636 (Closed): NPE in DeterminationDetailElement
- Checked all kind of specimen and field unit and it worked as expected.
05/28/2021
- 08:34 PM bug #9636: NPE in DeterminationDetailElement
- Please review.
- 08:33 PM bug #9636 (Resolved): NPE in DeterminationDetailElement
- Applied in changeset commit:taxeditor|c7641204b013ae501d942505847201e7617d4d66.
- 08:30 PM bug #9636 (Closed): NPE in DeterminationDetailElement
- this is due to changes in CdmSectionPart.setFormInput() with commit 8aaabf5035f where derivedUnitFacade is replaced b...
- 08:33 PM Revision c7641204 (taxeditor): fix #9636 fix NPE in DeterminationDetailElement
- 08:33 PM Revision ac70dabe (taxeditor): cleanup and set cancelable to true SetXXXForSubtreeOperations
- 04:11 PM Revision 934b40da (cdm-dataportal): Merge branch 'develop' into support/5.23.1
- 04:07 PM Revision 32a930c7 (cdm-dataportal): updating README
- 03:57 PM Revision 6dc2f272 (cdm-dataportal): fixing bug in update script
- 03:33 PM Revision b2e56eb8 (cdm-dataportal): update script improved
- 03:21 PM Revision 05d5bae9 (cdm-dataportal): un pinning drupal/drupal version
- 02:59 PM Revision fd9f41ae (cdm-dataportal): update script improved
- 02:43 PM Revision a6c0342d (cdm-dataportal): update script improved
- 01:44 PM Revision 93513495 (cdm-dataportal): update script improved
- 12:57 PM Revision 173745e8 (cdm-dataportal): update script improved
- 12:00 PM Revision fab7562d (cdmlib): fix #9398: when delete synonym but name is not deletable, add name to updated objects
- 12:00 PM bug #9398 (Resolved): ObjectNotFoundException when removing a synonym that is used as NameInSource
- Applied in changeset commit:cdmlib|fab7562d10933769c27f26176f401cb92d75e234.
- 11:45 AM Revision e728e2eb (cdm-dataportal): adding update script
- 11:44 AM Revision c1f181ba (cdm-dataportal): update instructions continued
- 09:55 AM Revision 85f3df99 (taxeditor): ref #9630: avoid IAE continue
- 09:53 AM Revision 49fc34f0 (cdmlib): ref #9630: override toString()
- 09:02 AM bug #9630 (In Progress): Make the handling of computed description configurable
05/27/2021
- 04:06 PM bug #9635 (Closed): LazyInitializationException (LIE) in TaxonPortalContoller
- http://api.cybertaxonomy.org/euromed/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1&do...
- 03:55 PM bug #9634 (Closed): Update AgentBase and DescriptiveDataSet titleCache length where needed
- In some databases the AgentBase titleCache has only length 255, not 800. Also the DescriptiveDataSet titleCache has u...
- 03:29 PM Revision bac6e6b4 (taxeditor): ref #9629: handle OptionalDataException - continue
- 02:24 PM bug #9600 (In Progress): Delete of taxon with unselected name delete returns warning
- The exceptions where caused by the names of the synonyms (but there are more messages than synonyms, this needs to be...
- 12:02 PM Revision bc2df6ea (taxeditor): ref #9630: make computed descriptions handling configurable - avoid IAE
- 11:46 AM bug #9629 (Resolved): Better handling of OptionalDataException
- the exception is hanlded now, please review.
- 11:45 AM Revision ab79a3ac (taxeditor): ref #9629: handle OptionalDataException
- 11:12 AM bug #9630 (Resolved): Make the handling of computed description configurable
- this is fixed, please review.
- 10:47 AM Revision 7fcccab7 (taxeditor): ref #9630: make computed descriptions handling configurable - adapt content and label provider
- 10:45 AM Revision 12521139 (taxeditor): ref #9630: make computed descriptions handling configurable - adapt handler
05/26/2021
- 03:51 PM Revision 0ab60230 (taxeditor): ref #9630: make computed descriptions handling configurable
- 03:39 PM Revision 3012f271 (cdmlib): ref #9630: add PreferencePredicate for computed Descriptions
05/21/2021
- 06:26 PM Revision 7650207f (cdmlib-apps): adaptions to 5.23 and prior
- 06:04 PM Revision db6d83d6 (cdm-dataportal): pinning drupal version to 7.62 for testing
- 06:04 PM Revision 2776ab75 (cdm-dataportal): update instructions continued
- 02:55 PM bug #9588 (Closed): Specimen Tree View: Duplicate derivatives
- The link in the ticket description works now as expected so we can close this ticket.
- 11:45 AM Revision 53d2daf2 (cdmlib): ref #5573: remove resetTitleCache in setMedia()
- 11:43 AM Revision eb34070d (taxeditor): ref #5573: call resetTitleCache after changing media
- 11:36 AM Revision e47983d4 (cdmlib): minor cleanup
- 11:29 AM Revision ea53c256 (cdmlib): ref #9622 remove setTaskName and done from aggregate()
- 11:14 AM Revision f7182054 (cdmlib): minor
- 10:30 AM Revision 82fc2a40 (cdm-dataportal): cleaning up java-doc
- 10:30 AM Revision 61710aca (cdm-dataportal): updating release version in README and fixing typos
- 10:20 AM task #9576: Add tests for homotypic group name comparator
- Andreas Müller wrote:
> Does the unified HomotypicGroupTaxonComparator include the tests then?
There is not need ... - 10:12 AM task #9576: Add tests for homotypic group name comparator
- Does the unified HomotypicGroupTaxonComparator include the tests then?
- 09:15 AM task #9576 (Rejected): Add tests for homotypic group name comparator
- The HOmotypicalGroupNameCOmparator is not used anymore therefore I would remove it and close this ticket because we d...
- 09:17 AM Revision 26060d0d (cdmlib): ref #9576: delete HomotypicaGroupNameComparator
- 08:55 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > diese Liste dürfte vollständig sein https://www.iapt-taxon.or... - 08:01 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- looks like the final list is still missing
- 08:24 AM bug #9529: Correct formatting for bibliographic in-reference separation
- This was mostly done in 5.22
05/20/2021
- 06:09 PM Revision 4b04c212 (cdm-dataportal): Merge branch 'release/5.23.0' into develop
- 06:09 PM Revision 5f5c2f3e (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
- 06:09 PM Revision 7357c5a9 (cdm-dataportal): updating poms for branch'release/5.23.0' with non-snapshot versions
- 06:08 PM Revision f7a5c2ea (cdm-dataportal): release-preparation: production level css
- 06:04 PM Revision 4fb8f3fe (cdm-dataportal): updating poms for 5.24.0-SNAPSHOT development
- 06:00 PM Revision 49f7cc43 (cdm-dataportal): fixing little probelms in README
- 06:00 PM Revision e34c07ee (cdm-dataportal): update ducumentation in README completed
- 06:00 PM Revision 9237c9bb (cdm-dataportal): also preserving the profiles folder
- 05:54 PM Revision 8ebc313f (cdm-dataportal): release-preparation: production level css
- 05:52 PM Revision 9f4bb2ee (cdm-dataportal): release-preparation: production level css
- 05:49 PM Revision b752bc04 (cdm-server): Merge branch 'release/5.23.0' into develop
- 05:49 PM Revision 82603df9 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 05:49 PM Revision 97435cda (cdm-server): updating poms for branch'release/5.23.0' with non-snapshot versions
- 05:13 PM Revision 7d8aa7ff (cdm-webapp): Merge branch 'release/5.23.0' into develop
- 05:13 PM Revision 64adf69d (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 05:12 PM Revision 7fb6814f (cdm-webapp): updating poms for branch'release/5.23.0' with non-snapshot versions
- 05:12 PM Revision f7bb7908 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.23.0
- 05:11 PM Revision f95fb91d (cdm-vaadin): Merge branch 'release/5.23.0' into develop
- 05:11 PM Revision 19e34159 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 05:09 PM Revision 2c2494af (taxeditor): Merge branch 'release/5.23.0' into develop
- 05:09 PM Revision 2445fd8d (taxeditor): Merge branch 'release/5.23.0'
- 05:07 PM Revision 65fed6f7 (cdm-vaadin): updating poms for branch'release/5.23.0' with non-snapshot versions
- 05:07 PM Revision a130cbb8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.23.0
- 05:07 PM Revision 1e450eef (cdmlib): Updating develop poms back to pre merge state
- 05:07 PM Revision ba73614b (cdmlib): Merge branch 'master' into develop
- 05:07 PM Revision 73e9f096 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 05:07 PM Revision 0637e4b1 (cdmlib): Merge branch 'release/5.23.0'
- 05:05 PM task #8081 (Closed): Complete removal of redmine communication hub instances
- removed all remains from
* edit-int
* edit-test
* edit-staging
* edit-com - 04:50 PM Revision fb75fb5a (cdm-dataportal): fixing little probelms in README
- 04:48 PM Revision 4e871f29 (cdmlib): updating poms for branch'release/5.23.0' with non-snapshot versions
- 04:43 PM Revision 7d081105 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.23.0-SNAPSHOT
- 04:43 PM Revision dabb33f2 (cdm-webapp): updating poms for 5.24.0-SNAPSHOT development
- 04:43 PM Revision 3ad9cd63 (cdm-webapp): updating poms for 5.23.0 branch with snapshot versions
- 04:43 PM Revision 6a0e0d04 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.24.0-SNAPSHOT
- 04:41 PM Revision 119ce179 (cdm-vaadin): jenkins bumping cdmlib.version to 5.23.0-SNAPSHOT
- 04:41 PM Revision 5b8b67c7 (cdm-vaadin): updating poms for 5.24.0-SNAPSHOT development
- 04:41 PM Revision 0c43eb5d (cdm-vaadin): updating poms for 5.23.0 branch with snapshot versions
- 04:41 PM Revision d610e81a (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 04:39 PM Revision c3dc5ecc (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 04:27 PM Revision 187ac0a5 (cdm-vaadin): jenkins bumping cdmlib.version to 5.23.0-SNAPSHOT
- 04:27 PM Revision a5f30f1e (cdm-vaadin): updating poms for 5.24.0-SNAPSHOT development
- 04:27 PM Revision 175f280a (cdm-vaadin): updating poms for 5.23.0 branch with snapshot versions
- 04:26 PM Revision 2422d4a6 (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 04:25 PM Revision 9bbaa6e5 (taxeditor): Updated version in pom / project files to taxeditor version : 5.24.0-SNAPSHOT and cdmlib version : 5.24.0-SNAPSHOT
- 04:25 PM Revision 035e7f49 (taxeditor): Updated version in pom / project files to taxeditor version : 5.23.0 and cdmlib version : 5.23.0
- 04:18 PM Revision a7b308fd (cdm-dataportal): update ducumentation in README completed
- 04:18 PM Revision f3e7520d (cdm-dataportal): also preserving the profiles folder
- 03:24 PM Revision f16d2d87 (taxeditor): Updated version in pom / project files to taxeditor version : 5.23.0 and cdmlib version : 5.23.0
- 03:23 PM Revision 1d619904 (cdm-vaadin): updating poms for 5.24.0-SNAPSHOT development
- 03:23 PM Revision 0f58ba12 (cdm-vaadin): updating poms for 5.23.0 branch with snapshot versions
- 03:23 PM Revision 73fddc8c (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 03:23 PM Revision ae7f8450 (cdm-dataportal): updating poms for 5.24.0-SNAPSHOT development
- 03:23 PM Revision 10275ddb (cdm-server): updating poms for 5.24.0-SNAPSHOT development
- 03:20 PM Revision 97b9f1f3 (cdmlib): updating poms for 5.24.0-SNAPSHOT development
- 03:20 PM Revision c2938224 (cdmlib): updating poms for 5.23.0 branch with snapshot versions
- 03:18 PM Revision 3a6a121a (cdm-dataportal): restoring drupal version
- 03:17 PM Revision 0dfee367 (cdm-dataportal): update instructions continued
- 03:09 PM feature request #5573 (Closed): Cache Strategy for Media Specimen required
- tested the workaround on nightly and it worked as expected.
- 03:04 PM feature request #5573: Cache Strategy for Media Specimen required
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The failing test is fixed now (titleCa... - 12:07 PM feature request #5573: Cache Strategy for Media Specimen required
- Katja Luther wrote:
> Andreas Müller wrote:
> > The failing test is fixed now (titleCache is set to null and a prop... - 11:35 AM feature request #5573: Cache Strategy for Media Specimen required
- Andreas Müller wrote:
> The failing test is fixed now (titleCache is set to null and a property change event is thro... - 03:04 PM feature request #9326 (Closed): Show all authors in bibliographic references
- I guess this can be closed as it is about team formatting and full stop separation which both is fixed.
Open issues ... - 10:08 AM feature request #9326 (Feedback): Show all authors in bibliographic references
- Wolf-Henning Kusber wrote:
> Habe die Beispiele angeschaut, Uptdate der Caches war notwendig.
> Fast alles ist jetz... - 08:54 AM feature request #9326: Show all authors in bibliographic references
- https://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/reference/843e5544-2081-4547-98aa-418db8fb1f85
- 02:37 PM Revision 784f80e6 (cdmlib): ref #5573: reset titleCache for setMedia in mediaSpecimen
- 01:19 PM Revision 738b5b05 (taxeditor): cleanup
- 01:17 PM Revision 7357605f (taxeditor): ref #5573: setMedia for media changes in MediaSpecimenDetailElement
- 12:49 PM Revision cd37bc26 (cdmlib): ref #9326, ref #3764 fix secion in book-section handling and some cleanup in ReferenceDefaultCacheStrategy (cont.)
- 12:48 PM Revision 1c5d9ea6 (cdmlib): cleanup
- 12:30 PM Revision 61157129 (cdmlib): ref #9326, ref #3764 fix secion in book-section handling and some cleanup in ReferenceDefaultCacheStrategy
- 12:05 PM Revision 2edaaec5 (cdm-dataportal): pinning drupal version to 7.62 for testing
- 11:13 AM Revision 9a339764 (cdm-dataportal): fixing composer version number of drupal/zen
- 11:13 AM Revision e4a638b8 (cdm-dataportal): update instructions continued
- 10:53 AM Revision aae4944c (cdm-dataportal): fixing composer version number of drupal/zen
- 10:50 AM Revision 490421a2 (cdm-dataportal): update instructions continued
- 09:58 AM Revision 4605409b (cdmlib): ref #9326 fix missing article title for section in title (cont.)
- 09:46 AM Revision 83aa4bc1 (cdmlib): ref #9326, ref #3764 fix missing article title for section in title and add according test (cont.)
- 09:44 AM Revision 45aa81d7 (cdmlib): ref #9326, ref #3764 fix missing article title for section in title and add according test
05/19/2021
- 05:38 PM feature request #5573: Cache Strategy for Media Specimen required
- The failing test is fixed now (titleCache is set to null and a property change event is thrown). However, as the even...
- 05:12 PM Revision ac9d4d38 (cdm-dataportal): README: first update instructions
- 05:10 PM Revision 01d32cbd (cdmlib): ref #9632, ref #5573 fix titleCache update in Media with workaround (not aspectj yet) (cont.)
- 04:50 PM bug #9629: Better handling of OptionalDataException
- The general problem was reported in #9358 already.
- 12:52 PM bug #9629: Better handling of OptionalDataException
- I guess this is fast to implement as we only need to search for "java.io.OptionalDataException" in the stacktrace.
A... - 12:31 PM bug #9629 (In Progress): Better handling of OptionalDataException
- This exception should be handled and the user should be informed to restart the editor.
~~~ text
last remote meth... - 04:48 PM feature request #9326: Show all authors in bibliographic references
- Habe die Beispiele angeschaut, Uptdate der Caches war notwendig.
Fast alles ist jetzt gut umgesetzt. 19.05.2021
E... - 04:29 PM Revision a8990cda (taxeditor): fix compile errors for putDescription
- 03:29 PM Revision 10ab27cc (cdmlib): ref #9632, ref #5573 fix titleCache update in Media with workaround (not aspectj yet)
- 03:26 PM Revision 64fa0c3c (cdmlib): cleanup
- 03:25 PM Revision 0f6b5dda (cdmlib): ref #6359, ref #9627 fix tests for setSecundumForSubtree workaround
- 03:12 PM bug #9633 (New): startup option to create an initial classfication
- To be implemented into `FirstDataInserter`
in case `createInitialClassification` is `true` and there is no classif... - 03:04 PM bug #9632 (New): Handle putXXX and remove with aspectj where necessary
- See e.g. TODO in Media.putTitle()
- 02:54 PM Revision ac5db269 (cdmlib): ref #9627 workaround for update result including taxonBase in setSecundumForSubtree
- 02:53 PM Revision 0e227b90 (cdmlib): ref #6427 add in doc
- 02:14 PM task #9607 (Closed): read image metadata from MediaInfoService if available
- 01:27 PM feature request #8471 (Closed): Computed descriptions should be disabled in TaxEditor
- New tickets created.
- 01:06 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- This ticket can be closed once the new 2 tickets are created.
- 01:06 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- >Another issue is that sections can be opened now. E.g. if there is an annotation I can't see it's content as I can't...
- 12:59 PM feature request #8471 (Feedback): Computed descriptions should be disabled in TaxEditor
- The UUID and ID fields can not be copied anymore. In general it might be a good idea not to fully disable fields but ...
- 01:26 PM bug #9631 (New): New implementation for disable details/supplemental data views
- from #8471:
The UUID and ID fields can not be copied anymore. In general it might be a good idea not to fully disa... - 01:24 PM bug #9630 (Closed): Make the handling of computed description configurable
- from #8471:
This ticket is not meant to completely make the computed descriptions invisible. By default they shoul... - 01:12 PM bug #9587 (Closed): Unsaved changes are lost when trying to open a taxon a second time
- Katja Luther wrote:
> Andreas Müller wrote:
> > This does not seem to work if a taxon is used multiple times. E.g. ... - 12:47 PM Revision cb89a368 (cdmlib): ref #9607 using parallel stream to collect metadata for IIIF manifest
- 12:25 PM feature request #9622: Improve remoting progress monitor handling
- Andreas Müller wrote:
> >bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View z... - 12:52 AM feature request #9622: Improve remoting progress monitor handling
- >bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View zeigt er "No subtask name"...
- 11:50 AM Revision 155b3863 (cdmlib): ref #5573: adapt test
- 11:24 AM bug #6427: Improve Matching for Reference.title and abbrevTitle
- This is not so urgent anymore since we have the MatchStrategyFactory and especially the ParsedXxxMatchers. However, f...
- 10:58 AM feature request #8789: How can we semantically handle characters like "partial inflorescence arrangement - distance 1st to 2nd bract"
- AM:
Is this still an open issue? Is it urgent?
NoK:
für derlei Fälle habe ich in den letzten Monaten (bei Lactucin... - 10:57 AM task #6284 (Closed): media.bgbm.org available via https
- Meanwhile, the media servers functionality has moved to https://image.bgbm.org/ and https://pictures.bgbm.org/
Both ... - 10:52 AM task #6284 (Feedback): media.bgbm.org available via https
- Is this still an open issue? I think we do not receive media from https://media.bgbm.org/erez/ anymore but I may be w...
- 10:55 AM feature request #6929 (Feedback): handling of misapplied names without accepted name
- Is this still an open issue. The ticket is 3 years old and I guess it is fixed but I am not sure if I understand the ...
- 10:33 AM bug #6359 (Closed): Remaining issues secundum for subtrees
- Also created a new ticket for better update result handling: #9628
So we can close this ticket now. - 10:27 AM bug #6359: Remaining issues secundum for subtrees
- Created a follow-up ticket #9627 for correct update result handling on editor side
- 10:31 AM task #9628 (New): Improve update result handling for monitored operations
- Currently it is handled in AbstractUtility.createUpdateResultReport() since #6359.
Probably we should try to unify... - 10:29 AM Revision e82d1be9 (taxeditor): cleanup
- 10:19 AM bug #9627 (New): Handle updated objects correctly in monitored operations in taxeditor
- Currently in AbstractUtility.executeMoniteredOperation()
~~~
Set<Taxon> taxaToUpdate = getTaxaToUpdate(firstRemot... - 10:19 AM Revision aa6e8f47 (cdm-dataportal): adapting tests to new refenence cache strategy
- 10:07 AM Revision 0f89d975 (taxeditor): cleanup
- 08:45 AM feature request #9611 (Closed): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > Can we have more space between Pro Parte... - 08:42 AM Revision b2beda87 (taxeditor): ref #9611: more space between the specific and the general flags
- 08:09 AM Revision 1aabfe1b (cdmlib): fix count for cache updater progress monitor
- 12:45 AM Revision 809fcc17 (cdmlib): ref #9622, ref #6359, #8871 adapt progress monitoring for description aggregation
- 12:37 AM Revision f30091c2 (cdmlib): cleanup
05/18/2021
- 11:01 PM Revision 860f741a (cdmlib): fix potential NPE
- 10:28 PM Revision d0b31346 (cdmlib): ref #9607 processing of metadata with custom structure & test
- 10:28 PM Revision c3227e69 (cdmlib): ref #9607 adding more default media metadata fields
- 10:28 PM Revision 6f82f20d (cdmlib): ref #9607 customized dozer mapping and more tests
- 06:09 PM feature request #9611 (Feedback): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> Can we have more space between Pro Parte and Overwrite existing ... t... - 06:00 PM feature request #9433 (Closed): Improve titleCache generation for misapplications
- 05:51 PM feature request #9433 (Resolved): Improve titleCache generation for misapplications
- Applied in changeset commit:cdmlib|64223995926d2072cd149e408ec437c64c8c7603.
- 05:50 PM Revision 64223995 (cdmlib): fix #9433 moved authorship to the non part at end, nom. status is not part anyway
- 03:47 PM Revision a21ab50f (cdmlib): ref #1924 put year after author in bibliographic references and separate with colon (cont.)
- 03:22 PM bug #1924: CIHORIEAE in-references in Footnotes
- The "publisher" issue (from attachement) was moved to new ticket #9626.
Only open issue: verbatim year - 03:12 PM Revision 9d4f868a (cdmlib): ref #1924 put year after author in bibliographic references and separate with colon
- 01:24 PM Revision 570e1cf4 (taxeditor): ref #8471: always disable type field
- 01:20 PM bug #6359: Remaining issues secundum for subtrees
- So the progress monitor handling is fixed, we can close this ticket. A new ticket for user friendly result report and...
- 12:15 PM feature request #8471 (Resolved): Computed descriptions should be disabled in TaxEditor
- Andreas Müller wrote:
> The description itself is not yet disabled in details view (but it is in suppl data view). T... - 12:02 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Müller wrote:
> The "Types" field for ordinary descriptions is now enabled but shouldn't because it is read ... - 10:09 AM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Müller wrote:
> I think we should reenable the "delete" menu item as it should always be possible to remove ... - 09:04 AM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Müller wrote:
> The description itself is not yet disabled in details view (but it is in suppl data view). T... - 12:14 PM Revision 4cf3f92d (taxeditor): ref #8471: disable toggle button in details view
- 12:01 PM Revision e297472a (taxeditor): ref #8471: set details view disabled for computed descriptions and remove unnecessary code
- 11:52 AM feature request #5573: Cache Strategy for Media Specimen required
- Andreas Müller wrote:
> Katja Luther wrote:
> > Shouldn't the motif be part of the titlecache if no other field is ... - 09:48 AM Revision c6df1ae1 (taxeditor): ref #8471: allow delete again and disable description parts
- 08:57 AM Revision f7f59ba5 (cdm-dataportal): adapting tests to new refenence cache strategy
- 12:10 AM task #9607 (Resolved): read image metadata from MediaInfoService if available
- 12:06 AM Revision e5f4183f (taxeditor): ref #9607 adapting to renamend class -> MediaInfoFileReader
- 12:06 AM Revision 17d14285 (cdmlib): ref #9607 more tests
- 12:06 AM Revision b9c66ce9 (cdmlib): ignoring src/main/resources/dbscripts
- 12:06 AM Revision 7c55e607 (cdmlib): ref #9607 completing MediaInfoServiceReader
- 12:06 AM Revision 6c5265eb (cdmlib): ref #9607 renaming class to MediaInfoFileReader
- 12:06 AM Revision 37788f69 (cdmlib): ref #9607 adding media-info-model as dependency
- 12:06 AM Revision c17dc959 (cdmlib): improved error reporting
05/17/2021
- 07:15 PM Revision 0c85f8e9 (cdmlib): ref #1924 use colon as after author and year operator
- 06:05 PM bug #8521 (Duplicate): User details view: Change password button accessible for ROLE_USER_MANAGER
- this is handled with #8925
- 06:04 PM Revision 79ec1575 (cdmlib): cleanup
- 06:04 PM Revision e9129942 (cdmlib): ref #9624 use short citation without brackets in cdmlight reference export (cont.)
- 06:04 PM Revision 036a4353 (cdmlib): ref #9624, ref #7305, ref #9326 change max number of nomencl. authors to unlimited
- 06:03 PM Revision 05bfd934 (taxeditor): add user_manager to core expression of admin menu
- 05:27 PM Revision 589e12fd (cdmlib): adapt cache updater for new progress monitor handling - adapt updateCaches in IdentifiableServiceBase
- 05:21 PM Revision 8cf3e01e (cdmlib): adapt cache updater for new progress monitor handling - continue
- 05:17 PM Revision dcce51e5 (cdmlib): adapt cache updater for new progress monitor handling - continue
- 05:14 PM Revision 0f88765e (cdmlib): adapt cache updater for new progress monitor handling - continue
- 05:14 PM Revision 1edd8f23 (cdmlib): adapt cache updater for new progress monitor handling
- 04:46 PM Revision e74ca981 (cdmlib): minor
- 04:45 PM Revision ff02c87a (cdmlib): minor
- 04:44 PM Revision e806a768 (cdmlib): ref #9624 use short citation without brackets in cdmlight reference export
- 04:09 PM Revision 1b643550 (taxeditor): ref #9622 , ref #6359 handle progress monitor without setting taskName multiple times and some further fixes
- 03:29 PM bug #6359: Remaining issues secundum for subtrees
- Katja Luther wrote:
> I tried to adapt the progress monitor handling like for the cache update and the output in edi... - 03:26 PM bug #6359: Remaining issues secundum for subtrees
- I tried to adapt the progress monitor handling like for the cache update and the output in editor looks like this:
... - 03:00 PM bug #6359: Remaining issues secundum for subtrees
I think the usage of submonitors needs to be adapted, I already did this for cache update, there the submonitor lab...- 03:27 PM Revision 0ea7bbfa (taxeditor): ref #9622 some error handling in progress monitoring
- 02:29 PM Revision 3231a5c3 (cdmlib): ref #9624 use default short citation for TaxonRelationshipFormatter (e.g. MAN or ppSyns citations)
- 02:27 PM task #9624: Centralize team formatting and fix et al. position handling
- AM: ... wird bei den err. sec. (und auch syn. sec. von pp-Synonymen) das „Kurzzitat“ noch mit >2 Autoren angezeigt. A...
- 01:37 PM bug #9590 (Closed): ObjectDeletedException when swap synonym and accepted taxon
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also there is a looot of commented cod... - 01:35 PM Revision ab72e607 (cdmlib): ref #9590: remove unused variable
- 01:35 PM bug #2969 (Closed): Correct formatting for bibliographic references
- The cache strategies are split now (e.g. #9604). Examples for correct formatting bibliographic references are given i...
- 01:24 PM feature request #9611 (Resolved): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Katja Luther wrote:
> > > > Andreas M... - 12:47 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > implement... - 12:23 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > implemented. Please adapt UI.
> >
>... - 01:23 PM Revision 17cca815 (taxeditor): ref #9587: adapt editor handling for shared taxa - continue
- 12:42 PM bug #9587 (Resolved): Unsaved changes are lost when trying to open a taxon a second time
- 12:39 PM bug #9587: Unsaved changes are lost when trying to open a taxon a second time
- Andreas Müller wrote:
> This does not seem to work if a taxon is used multiple times. E.g. if you search for "Sectes... - 12:40 PM Revision 60fa760b (taxeditor): ref #9587: adapt editor handling for shared taxa
- 12:31 PM Revision 8e5f7864 (taxeditor): ref #9611: move use shared taxa to the general flags
- 11:06 AM bug #9588: Specimen Tree View: Duplicate derivatives
- Andreas Kohlbecker wrote:
> I don't understand why you are changing the category, this clearly was a bug in cdmlib-s... - 10:54 AM bug #9588: Specimen Tree View: Duplicate derivatives
- I don't understand why you are changing the category, this clearly was a bug in cdmlib-services
- 11:00 AM task #9623 (Closed): Remove TaxonBaseShortSecCacheStrategy
- ok
- 10:58 AM feature request #7305 (Closed): [Dicuss] searching for authorteam with more than three members is incomplete
- works as expected.
- 09:45 AM Revision b53660e6 (cdmlib): add appended phrase to scientific name, taxon and synonym tables
- 09:31 AM bug #9625 (Closed): Selection for team members does not filter on persons only
- 09:31 AM bug #9625 (Closed): Selection for team members does not filter on persons only
- 09:22 AM bug #9529 (Closed): Correct formatting for bibliographic in-reference separation
- WGB: ich bin auf jeden Fall für das Komma!
NoK: Bin ... Walters Meinung - 09:06 AM Revision 85526f34 (cdmlib): fix getUuidAndTitleCache for persons/teams only
05/16/2021
- 11:53 PM feature request #2854 (Closed): Implement part of other title for part of articles and part of booksections
- The possible open issue is not relevant anymore as BM imports are mostly done. Also the issue is logged in case it is...
- 11:44 PM bug #9373 (Feedback): In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
05/15/2021
- 02:35 AM feature request #9433 (Feedback): Improve titleCache generation for misapplications
- > Wenn wir das auf sensu ändern wäre es auch schön, wenn man an dieser Stelle auch Autor und nom. Status weglassen wü...
- 02:27 AM feature request #3667 (Closed): Implement correct implementation of original spelling in publications
- Andreas Müller wrote:
> Still need to check/discuss if this is already the case in dataportal and print publication
... - 02:25 AM feature request #3667: Implement correct implementation of original spelling in publications
- Still need to check/discuss if this is already the case in dataportal and print publication
- 02:19 AM bug #6960 (Duplicate): Improve reference cachestrategy
- This duplicates #4338
- 02:18 AM bug #6960: Improve reference cachestrategy
- > webpage without title duplicates the URI
can't reproduce this anymore, seems to be fixed in the meanwhile - 02:05 AM feature request #3764: Improve formatting for reference type Section
- Final tests should be written. See also #6499. ~~Then move back to 3.8 if no major changes needed.~~ There were a cou...
- 02:00 AM bug #3872 (Worksforme): Title cache is null if the reference is a journal
- I can't reproduce this anymore. Maybe it was fixed with the ReferenceDefaultCacheStrategy refactoring.
- 01:49 AM bug #4773 (Worksforme): Lampranthus throws IndexOutOfRange exception
- The exception is not thrown anymore for such a combination and for the concrete taxon in caryo. Also the result looks...
- 01:35 AM bug #1815 (Closed): setInReference needs to reset the title cache
- This seems to be fixed. See also tests in ReferenceDefaultCacheStrategy
- 01:34 AM Revision 461c07a9 (cdmlib): ref #1815 final tests on reset titleCache
- 01:27 AM task #1404 (Rejected): References cache strategy should always render bibliographic references
- This is not relevant anymore. Current implementation works for users. Also there are 2 caches now for abbrev and full...
- 12:31 AM Revision 275b7d80 (cdmlib): ref #9624 fix EMPTY_TEAM issue for non-titleCache formatting of teams
- 12:02 AM Revision b5a187e2 (cdmlib): ref #9530, ref #6499 add pages for book sections (cont. II)
05/14/2021
- 11:58 PM Revision a67ed1e2 (cdmlib): reenable some test
- 11:58 PM Revision 00c59288 (cdmlib): ref #9530, ref #6499 add pages for book sections (cont.)
- 11:43 PM feature request #9530 (Closed): Add pages to bibliographic book sections
- 11:41 PM feature request #9530 (Resolved): Add pages to bibliographic book sections
- Applied in changeset commit:cdmlib|957a9a67a088b3e9f30bf2ac712aeb107d36b6d6.
- 11:41 PM Revision 957a9a67 (cdmlib): fix #9530, ref #6499 add pages for book sections
- 11:39 PM Revision 78fa4dec (cdmlib): ref #9529 replace afterSectionAuthor n-dash by comma
- 11:36 PM Revision 46062501 (cdmlib): ref #9604 adapt javadoc for ReferenceDefaultCacheStrategy
- 10:58 PM bug #9529: Correct formatting for bibliographic in-reference separation
- und noch eine Frage zur Formatierung. In #9529 haben wir ja beschlossen, dass bibliographische In-Referenzen mit „. –...
- 10:38 PM Revision 59fa7b84 (cdmlib): ref #9529 fix duplicated dashes and replaces minus by dashes in book sections without title
- 10:35 PM bug #5684 (Worksforme): NPE when trying to move a presence-absence term within the vocabulary
- This works for me and can be closed.
- 10:25 PM feature request #9326 (Resolved): Show all authors in bibliographic references
- This should be fixed now. Maybe before review an (title)cache update is necessary. For single teams this can be done ...
- 09:41 PM Revision cda77ee0 (cdmlib): revert deduplication for term DTOs (cont.)
- 09:33 PM bug #6749 (Closed): No media is created for new mediaSpecimen
- This works as expected
- 09:14 PM task #9624 (Resolved): Centralize team formatting and fix et al. position handling
- This is generally fixed. Fine tuning is still required for correct et al. positions. Email was sent to users.
- 07:43 PM task #9624 (Closed): Centralize team formatting and fix et al. position handling
- Formatting of teams is done at many places in cdmlib (TeamDefaultCacheStrategy, NomenclaturalSourceFormatting, TaxonB...
- 08:18 PM Revision 3edeea19 (taxeditor): cleanup
- 08:16 PM Revision e6f1e6f4 (taxeditor): remove colon after SetxxxForSubtree task names
- 08:15 PM Revision a80e388e (taxeditor): adapt ConceptContainerE4 to TaxonRelationshipFormatter factory method
- 08:07 PM feature request #7305 (Resolved): [Dicuss] searching for authorteam with more than three members is incomplete
- This should be fixed with #9624. Before reviewing you may need to run the cache updater.
- 08:00 PM feature request #6662 (Closed): Adapt person formatting, set initials behind lastname
- 07:57 PM feature request #6504 (Closed): Bibliographic references should not start with firstname.
- This should be fixed due to new cache strategy which puts initials after family name in biblo teams
- 07:54 PM Revision 0c763d5f (cdmlib): ref #9624, ref #7305, ref #9326 refactor team formatting all over cdmlib (including et al. handling for biblio references)
- 04:15 PM feature request #9597 (Closed): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting
- implementation and test case looks ok. As there are no test to be adapted in the dataportal, this ticket can be closed.
- 01:56 PM Revision f15653d2 (cdmlib): ref #7305, ref #9326 allow different etAlPosition for titleCache and nomCache and factory methods and cleanup tests
- 01:21 PM task #9623: Remove TaxonBaseShortSecCacheStrategy
- I think there is not much to review but just to let you know that I have done this.
- 01:18 PM task #9623 (Resolved): Remove TaxonBaseShortSecCacheStrategy
- Applied in changeset commit:cdmlib|e80d154bb2d5faf5c1219935eacc16132a22e82c.
- 01:13 PM task #9623 (Closed): Remove TaxonBaseShortSecCacheStrategy
- The cache strategy is not used anymore and TaxonBaseDefaultCacheStrategy now implements sec referencing the same way ...
- 01:17 PM Revision 37cb3cf7 (cdmlib): cleanup
- 01:17 PM Revision b53c4d75 (cdmlib): factory method and singleton support for TaxonRelationshipFormatter
- 01:14 PM Revision e80d154b (cdmlib): fix #9623 remove TaxonBaseShortSecCacheStrategy and CacheUpdaterWithNewCacheStrategy
- 12:48 PM feature request #9433 (Resolved): Improve titleCache generation for misapplications
- Applied in changeset commit:cdmlib|40708c65957005aa8723235844e7b9c3418f4525.
- 12:48 PM Revision 40708c65 (cdmlib): fix #9433 titleCache generation for misapplications only adapted (use sensu, not sec.)
- 12:24 PM Revision fff53afa (cdmlib): revert deduplication for term DTOs
- 12:19 PM Revision 40b8afc7 (cdmlib): cleanup
- 11:09 AM Revision c4dc8004 (cdmlib): remove doubful ? from protected taxon titleCaches
- 11:08 AM Revision 122a1b31 (cdmlib): cleanup
- 10:44 AM Revision 839fd95f (cdmlib): deduplicate all results in vocabulary dao
- 10:44 AM Revision 0e3fe1f6 (cdmlib): cleanup
- 10:29 AM Revision cdf681f0 (cdmlib): deduplicate all results in term dao
- 10:28 AM Revision 61ebc53c (cdmlib): cleanup
- 01:14 AM feature request #3666 (Closed): Implement original spelling in name parser
- 12:31 AM feature request #3666 (Resolved): Implement original spelling in name parser
- 12:16 AM Revision a04d9d22 (cdmlib): ref #3666 original spelling deduplication
05/13/2021
- 07:48 PM Revision 8c7aea47 (cdmlib): ref #3666 original spelling parser for names without reference
- 07:48 PM Revision 65d376ee (cdmlib): cleanup
- 06:48 PM Revision a3092afb (cdmlib): cleanup
- 06:48 PM Revision 58b3c0f6 (cdmlib): ref #3666 first implementation of original spelling parser (cont.)
- 06:47 PM Revision bb78f32e (cdmlib): ref #3666 first implementation of original spelling parser
- 02:04 PM feature request #9270 (Feedback): show original spelling on taxon page
- should we close this as duplicate (for #7781)?
- 02:01 PM feature request #9270: show original spelling on taxon page
- >Ich erinnere mich jetzt nicht daran warum das nach dem Namen kommt, das war aber sicherlich eine Anfrage/Anforderung...
- 01:50 PM bug #7781: original spelling is missing for accepted taxon in taxon page
- Also check if orginal name part is in italics as #3667 is now implemented
- 01:48 PM Revision 88c7ae13 (cdmlib): ref #3665 test for original spelling for differing species epi and subspecies epi
- 01:47 PM Revision 035bc68b (cdmlib): tests not failing without aspectj
- 01:45 PM feature request #3667 (Resolved): Implement correct implementation of original spelling in publications
- Applied in changeset commit:cdmlib|9f804efe2c1ddc0baaa3b1491d222e45acd84dd2.
- 01:45 PM Revision 9f804efe (cdmlib): fix #3667 implement tagged text for original spellings
- 12:24 PM task #9604 (Closed): Split bibliographic reference cache strategy and nomenclatural formatter + orginal source formatter
- 12:22 PM feature request #3665 (Closed): Further implementation of original spelling name caching
- I think this can be closed. No obvious feature from the ticket description/discussion seems to be missing. Italics fo...
- 12:16 PM Revision 65cf40d2 (cdmlib): ref #3667 some more tests for original spelling formatting
- 11:41 AM Revision 1d40411d (cdmlib): ref #9604 split to OriginalSourceFormatter (cont.)
- 11:38 AM feature request #9622 (In Progress): Improve remoting progress monitor handling
- 09:28 AM feature request #9622 (In Progress): Improve remoting progress monitor handling
- Open issues:
KL:
bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View zeig... - 11:16 AM Revision 440c1195 (cdmlib): ref #9604 split to OriginalSourceFormatter
- 11:14 AM Revision b182d576 (cdmlib): cleanup
- 09:29 AM Revision d1a73b19 (cdmlib): ref #9622 allow releasing progress monitors
- 09:27 AM Revision 2b39b9df (cdmlib): cleanup
- 01:26 AM Revision c9ccb1e7 (cdmlib): ref #6359 improve progress monitoring for setSecundumForSubtree
- 01:09 AM Revision 6537ad7c (cdmlib): cleanup
- 01:08 AM Revision ea3bd701 (cdmlib): ref #6359 fix NPE when removing sec
05/12/2021
- 10:27 PM Revision f35fc088 (taxeditor): cleanup
- 07:22 PM Revision 540b5fba (cdmlib): cleanup
- 07:22 PM Revision e436a9ce (cdmlib): ref #8297 improve out of scope handling for alphabetically ordered condensed distributions
- 05:46 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- I think we should reenable the "delete" menu item as it should always be possible to remove computed data again. Mayb...
- 05:42 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- The "Types" field for ordinary descriptions is now enabled but shouldn't because it is read only (should be set only ...
- 05:39 PM feature request #8471 (Feedback): Computed descriptions should be disabled in TaxEditor
- The description itself is not yet disabled in details view (but it is in suppl data view). This needs to be fixed.
- 05:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- The preferences to make the aggregated data either disabled, invisible or enabled is still missing, correct?
Shoul... - 08:46 AM feature request #8471 (Resolved): Computed descriptions should be disabled in TaxEditor
- Missed to check in the label provider, please review now. There is still a missing issue, the details of the descript...
- 08:30 AM feature request #8471 (In Progress): Computed descriptions should be disabled in TaxEditor
- 08:22 AM feature request #8471 (Resolved): Computed descriptions should be disabled in TaxEditor
- please review.
- 05:15 PM bug #9589 (Closed): Move synonym to another accepted taxon ignores the selected new sec reference
- works as expected
- 05:13 PM Revision f0a11642 (cdmlib): cleanup
- 05:01 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also there is a looot of commented code still in the methods. Also ... - 05:00 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- Katja Luther wrote:
> Andreas Müller wrote:
> > To me it looks like the code commented with "//Move descriptions to... - 02:52 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- I think this ticket can be closed?
- 02:51 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- Andreas Müller wrote:
> Also there is a looot of commented code still in the methods. Also some warning.
> Can you ... - 02:31 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- Andreas Müller wrote:
> As the 2 methods are now distinguished only by a boolean parameter we should add a ticket to... - 02:27 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- Andreas Müller wrote:
> To me it looks like the code commented with "//Move descriptions to new taxon" is fully redu... - 05:00 PM Revision 09d803a3 (cdmlib): ref #9590 remove redundant nameUsedInSource handling code
- 04:46 PM Revision d1f6619f (cdmlib): cleanup
- 04:29 PM Revision f5563b1b (cdmlib): cleanup
- 04:25 PM bug #6359: Remaining issues secundum for subtrees
- Katja Luther wrote:
> * make cancelable -> maybe we should show how many items already changed, especially because t... - 04:21 PM bug #6359: Remaining issues secundum for subtrees
- Katja Luther wrote:
> review:
>
> * add progress monitor -> the submonitors not shown in the status of the editor... - 03:56 PM bug #6359 (Feedback): Remaining issues secundum for subtrees
- review:
* add progress monitor -> the submonitors not shown in the status of the editor -> maybe a new ticket?
* ... - 03:01 PM bug #6359: Remaining issues secundum for subtrees
- Katja, kannst du das Ticket grundsätzlich schon mal reviewen? Wir müssen noch eine Lösung finden für die Auswertung d...
- 04:09 PM feature request #9611 (Feedback): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > implemented. Please adapt UI.
>
> The UI is adapted.
Can we h... - 02:56 PM feature request #9611 (Resolved): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> ... and the preference if this is fast. Otherwise open new ticket as it is not really urgent... - 12:10 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> implemented. Please adapt UI.
The UI is adapted. - 10:20 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- ... and the preference if this is fast. Otherwise open new ticket as it is not really urgent.
- 10:07 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- implemented. Please adapt UI.
- 10:03 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> >
> > > A bit problematic ist hte "Overw... - 09:55 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
>
> > A bit problematic ist hte "Overwrite existing sec refs for sele... - 09:47 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also I guess by default we should swit... - 09:44 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also I guess by default we should switch off "apply to MAN err. sec... - 09:26 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> Also I guess by default we should switch off "apply to MAN err. sec." and "apply to ppsyn sy... - 09:22 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Andreas Müller wrote:
> A bit problematic ist hte "Overwrite existing sec refs for selected relations option which... - 04:08 PM Revision 6fe5b1d5 (cdmlib): add comment to random uuid for condensed distribution
- 03:16 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Andreas Müller wrote:
> Die Liste enthält leider keine Abkürzungen, um die es aber gerade ging.
Aus einem Chat m... - 12:26 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Rein inhaltlich. Mindestens für das Projekt PhycoBank benötigen wir den Link zum Vollzitat. Ich gehe davon aus, das d...
- 12:23 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Zudem die Frage, wie mit den Langformen umzugehen ist. Bislang hatten wir uns darauf geeinigt, lediglich DOIs oder UR...
- 12:19 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Die Liste enthält leider keine Abkürzungen, um die es aber gerade ging. Letztlich kann ich nur raten. War der "Vienna...
- 12:11 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Isn't this a good start? We can add more lists on demand.
- 11:40 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Andreas Kohlbecker wrote:
> diese Liste dürfte vollständig sein https://www.iapt-taxon.org/historic/list-of-Codes.ht... - 11:33 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- diese Liste dürfte vollständig sein https://www.iapt-taxon.org/historic/list-of-Codes.htm
- 11:27 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Yes, will do two lissts, (i) a short citation, and (ii) correct citations with help of the literature in our library.
- 11:04 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- here is one kind of list https://www.iapt-taxon.org/historic/index.htm
- 10:48 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Andreas Müller wrote:
> But as I mentioned above I need a full list of all correct abbreviations for all codes. As l... - 10:27 AM bug #9618 (Closed): fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Solution accepted. Ticket can be closed.
- 02:55 PM bug #9621 (New): New Preference for Default of the SecundumForSubtreeConfigurator
- see #9611
- 02:51 PM feature request #5573: Cache Strategy for Media Specimen required
- Katja Luther wrote:
> Shouldn't the motif be part of the titlecache if no other field is filled?
> At the moment th... - 02:20 PM feature request #5573 (Feedback): Cache Strategy for Media Specimen required
- Shouldn't the motif be part of the titlecache if no other field is filled?
At the moment the titleCache is the UUID ... - 02:49 PM Revision 2031fd8d (cdmlib): ref #9590: code cleanup -continue
- 02:49 PM Revision 3834bd30 (cdmlib): ref #9590: code cleanup
- 02:47 PM Revision 0cc955fe (cdmlib): ref #5573 minor changes to MediaSpecimenDefaultCacheStrategyTest
- 02:30 PM bug #9620 (New): Add a preference which defines whether a new uuid is wanted for swap synoym and accepted
- from #9590:
As the 2 methods are now distinguished only by a boolean parameter we should add a ticket to define by... - 12:32 PM Revision 86f920de (taxeditor): ref #9611: adapt handler to changes in method signatur
- 12:09 PM Revision 5fdf87f0 (taxeditor): ref #9611: adapt taxeditor to changes in configurator
- 11:30 AM Revision 10db40b3 (cdmlib): cleanup
- 10:55 AM bug #9390: Remaining issues for set secundum dialog
- The line break is probably not so critical so I don't think we urgently need a self made dialogue. But I don't know h...
- 10:49 AM Revision 7cbe1369 (cdmlib): ref #9601, ref #9611 by default don't include MAN and ppSyns for setSecundumForSubtree (cont.)
- 10:25 AM bug #9612 (Closed): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
- Ja, die sollte weg, dass die hier keinen Sinn macht, meinte ich auch mit "seems like a copy of some other test."
... - 10:23 AM bug #9605 (Closed): Disable Details View for structure and property trees in character editor
- This works as expected now
- 10:17 AM Revision 2771d5a7 (cdmlib): ref #9612 removing unrelated test method and clarifying the remainig test method
- 10:08 AM bug #9601: Set secundum for subTree does not work for misapplied names
- I adapted default value for MAN and ppSyn. For discussion see #9611#note-13
- 09:57 AM bug #9601: Set secundum for subTree does not work for misapplied names
- Having 3 parameters for overwriteExistingXXX makes the UI complex and has not much added value. See discussion at #96...
- 10:05 AM Revision a6b03e32 (cdmlib): ref #9601, ref #9611 by default don't include MAN and ppSyns for setSecundumForSubtree
- 09:57 AM Revision a3247a01 (cdmlib): ref #9601, ref #9611 have only a single overwriteExisting parameter for setSecundumForSubtree
- 09:46 AM Revision e4b84e5f (cdmlib): cleanup
- 08:37 AM Revision d43e5395 (taxeditor): ref #8471: adapt label provider to show icon for computed descriptions and gray font
05/11/2021
- 11:34 PM Revision 84f29819 (taxeditor): ref #9590 use boolean parameter newUuidForAcceptedTaxon instead of 2 different public methods (taxeditor)
- 11:31 PM Revision 96d47ae0 (cdmlib): ref #9590 use boolean parameter newUuidForAcceptedTaxon instead of 2 different public methods (cont.)
- 11:22 PM Revision 894e913a (cdmlib): cleanup
- 11:21 PM bug #9587 (Feedback): Unsaved changes are lost when trying to open a taxon a second time
- This does not seem to work if a taxon is used multiple times. E.g. if you search for "Sectest cdcfd" in rem_conf_am a...
- 11:11 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Also I guess by default we should switch off "apply to MAN err. sec." and "apply to ppsyn syn. sec." as most projects...
- 11:07 PM feature request #9611 (Feedback): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Similar to the setPublishForSubtree dialog we should separate those parameters that do hold for all taxon types a bit...
- 10:38 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- As the 2 methods are now distinguished only by a boolean parameter we should add a ticket to define by preferences if...
- 10:36 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- To me it looks like the code commented with "//Move descriptions to new taxon" is fully redundant in both methods. If...
- 10:33 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- Also there is a looot of commented code still in the methods. Also some warning.
Can you please remove those parts o... - 10:27 PM bug #9590 (Feedback): ObjectDeletedException when swap synonym and accepted taxon
- I do not understand why we need the lines
~~~
acceptedTaxon.setTitleCache(null, true);
acceptedTaxon.g... - 10:24 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- Instead of having a new methode I added a new parameter (boolean newUuidForAcceptedTaxon) to the method and unified t...
- 10:23 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
- The original problem (re-save) is fixed with d4149686.
- 10:21 PM Revision 37c6014e (cdmlib): ref #9590 use boolean parameter newUuidForAcceptedTaxon instead of 2 different public methods
- 10:16 PM Revision 8bf7ecd2 (cdmlib): cleanup
- 06:57 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- >What if this information is to be shown the Data Portal, would you just write "Cambridge 1935" without stating which...
- 06:03 PM bug #9618 (Resolved): fix historic NomenclaturalCodeEdition names ICN -> ICBN
- You mean the "Suggestion" above?
I do not understand why this needs to be a method for NomenclaturalCode.
Why n... - 04:46 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- The Taxeditor is not the only UI we have. There is the UI where I took the screenshot from, therefore I don't quite u...
- 04:35 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- But I do not understand what we need the abbreviation for. It is really an important information to show the abbrevia...
- 04:30 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- I was not in cc of this ticket anymore therefore I missed the discussion.
- 03:09 PM bug #9618 (Feedback): fix historic NomenclaturalCodeEdition names ICN -> ICBN
- Andreas Müller wrote:
> NomenclaturalCodeEdition entry names are pure enum "names" not used for anything else. So we... - 06:45 PM bug #9612: ROLE_USER_MANAGER is missing as a group in FirstDataImporter
- But I also do not understand what the testInsertData() test method is for. It does not seem to be related to first da...
- 06:42 PM bug #9612 (Resolved): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
- The addMissingAuthority method is a private method that is explicitly tested in testBlankDB by the result dataset "Fi...
- 05:57 PM bug #9612: ROLE_USER_MANAGER is missing as a group in FirstDataImporter
- Andreas Kohlbecker wrote:
> implementation ok, the `FirstDataInserterTest` however looks like it has never been impl... - 05:39 PM bug #9612 (In Progress): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
- implementation ok, the `FirstDataInserterTest` however looks like it has never been implemented, seems like a copy of...
- 06:43 PM feature request #9613 (Closed): Use fixed uuids for roles project manager, publish and user manager
- 05:57 PM feature request #9613: Use fixed uuids for roles project manager, publish and user manager
- can be closed in principle, but see #9612 first.
- 06:26 PM task #9300: Name Page: harmonize media specimen lectotype representations
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > so should we change status to "in progress" as questions are ... - 06:01 PM Revision a306e68c (cdmlib): ref #9618 add NomenclaturalCodeEdition.abbrev (some abbrevs are still guesses)
- 05:47 PM bug #9185 (Closed): DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404 HTTP response
- no longer such NPEs in the logs
- 05:40 PM bug #9606 (Closed): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- yes
- 05:30 PM feature request #9619 (Closed): Model changes for taxon concept strategy
- Tested on test server. The new columns appear as expected.
- 03:29 PM feature request #9619 (Resolved): Model changes for taxon concept strategy
- 05:28 PM task #9536 (Closed): Remove old single source citation and microCitation columns for secundum and DescriptionElementBase_OriginalSourceBase and TaxonName_NomenclaturalStatus
- Tested on test server, works as expected after server ran update script
- 05:22 PM feature request #9575 (Closed): Allow flag to include authors in taxon and name search in TaxEditor
- works as expected now
- 05:19 PM task #9614 (Closed): Use underscore as word separator for all role based groups
- looks good
- 05:13 PM feature request #9597 (Resolved): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting
- Andreas Kohlbecker wrote:
> please can you clarify what the expected new output is?
>
> I am assuming this repres... - 04:24 PM feature request #9597 (Feedback): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting
- please can you clarify what the expected new output is?
I am assuming this representation in the new one ".... Ger... - 04:43 PM task #9617: Rename ICNB to ICNP
- Andreas Kohlbecker wrote:
> please consider the discussion in #9618 before closing this ticket, as the question ther... - 03:43 PM task #9617: Rename ICNB to ICNP
- please consider the discussion in #9618 before closing this ticket, as the question there is highly related.
- 03:40 PM task #9617 (Closed): Rename ICNB to ICNP
- I tink this can be closed. ICNB/P is not yet really used anyway.
- 12:33 PM task #9617 (Resolved): Rename ICNB to ICNP
- Applied in changeset commit:cdmlib|a918965a9529a628c997456fd5810338a2f7443f.
- 04:34 PM bug #9366 (Closed): Specimen type designation with specimen having only collection name but not collection code does not show collection information
- implementation looks correct, can be closed
- 03:52 PM Revision e4c6e7b3 (cdmlib): ref #9617 javadoc adaptations
- 03:48 PM Revision 084b31e9 (taxeditor): ref #9617 change label for ICNP in taxeditor
- 03:46 PM Revision c3391e45 (taxeditor): cleanup
- 03:39 PM Revision f785c3cc (cdmlib-apps): cleanup
- 03:39 PM Revision d3fb19db (cdmlib-apps): add EuroMedDistributionAggregationActivator
- 03:39 PM Revision 58a29e3b (cdmlib-apps): add CactaceaeIdentifierActivator
- 03:38 PM Revision 7fd0cf17 (cdmlib-apps): ref #9617 rename ICNB to ICNP in cdmlib-app
- 03:32 PM Revision 63fb5a6d (taxeditor): ref #6359 improve reporting for longrunning tasks with UpdateResult in TaxEditor
- 03:06 PM Revision cc21d978 (taxeditor): ref #8471: disable computed descriptions - supplemental data
- 03:02 PM Revision 0858c777 (taxeditor): ref #8471: disable computed descriptions
- 02:35 PM Revision 90ca7c0d (taxeditor): ref #9536 fix taxeditor test for removed classification.reference_id
- 02:06 PM Revision 98e684f7 (taxeditor): ref #9617 replace ICNB to ICNP in taxeditor (cont.)
- 01:35 PM Revision 6d6ca639 (taxeditor): ref #9617 replace ICNB to ICNP in taxeditor
- 01:35 PM Revision 3d012c19 (taxeditor): update taxeditor test H2 to 5.23
- 01:35 PM Revision 93aade5e (taxeditor): cleanup
- 01:04 PM Revision 72253758 (cdmlib): ref #9613 adapt uuids in tests
- 12:44 PM Revision 9038b634 (cdm-vaadin): update vaadin test H2 to 5.23
- 12:44 PM Revision 182c851e (cdm-vaadin): ref #9617 update vaadin doc
- 12:42 PM Revision bc589ebc (cdmlib): update cached model to 5.23
- 12:36 PM Revision c190b965 (cdmlib): update cdmlib test H2 to 5.23
- 12:35 PM Revision 4488955c (cdmlib): ref #9617 javadoc in rank class
- 12:31 PM Revision a918965a (cdmlib): fix #9617 rename ICNB to ICNP in cdmlib
- 12:16 PM Revision c8e51fc7 (cdmlib): upgrade to v5.23
- 12:16 PM Revision 81c55de3 (cdmlib): ref #9613 change uuid for role project manager as it was used also for user manager before
- 12:12 PM Revision 2cfe7954 (cdmlib): ref #9539 add clone for availableFor
- 12:05 PM bug #6359 (Resolved): Remaining issues secundum for subtrees
- 12:04 PM Revision 6c880f75 (cdmlib): cleanup
- 12:03 PM Revision 2368acec (cdmlib): ref #9619 add conceptId, conceptDefinitions, conceptStatus, taxonTypes and currentConceptPeriod to Taxon
- 10:59 AM bug #9615 (New): Options for schema creation in empty data bases.
- Thank you for this hint. The cdmlib-remote will create the schema creation when the parameter `cdm.forceSchemaCreate`...
- 10:22 AM feature request #8708 (Duplicate): Sort taxa in distribution editor same as in navigator
- this is a duplicate for #9416 and #9354, so I close this ticket as duplicate.
- 09:31 AM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > This to me seems to be fixed. Katja ... - 09:03 AM bug #9469 (Closed): Searching for a UUID in bulkeditor which does not belong to a record throws an exception
- Tested it in TeamOrPerson Bulkeditor and Namebulkeditor and got no exception, seems to be fixed.
- 08:58 AM bug #9605 (Resolved): Disable Details View for structure and property trees in character editor
- Andreas Müller wrote:
> Generally this works. However, there is a special situation which shows a strange behavior:
... - 08:57 AM Revision 59cd7375 (taxeditor): ref #9605: correct handling of selection handling when opening termtree or term editor
05/10/2021
- 05:17 PM task #9617: Rename ICNB to ICNP
- Andreas Kohlbecker wrote:
> NOTE: this change in `NomenclaturalCodeEdition` should not affect the `name` of historic... - 04:28 PM task #9617: Rename ICNB to ICNP
- NOTE: this change in `NomenclaturalCodeEdition` should not affect the `name` of historic code editions which where or...
- 03:11 PM task #9617 (Closed): Rename ICNB to ICNP
- Since certain time the code is better called ICNP. See https://en.wikipedia.org/wiki/International_Code_of_Nomenclatu...
- 05:16 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- NomenclaturalCodeEdition entry names are pure enum "names" not used for anything else. So we can rename them but ther...
- 04:35 PM bug #9618 (Closed): fix historic NomenclaturalCodeEdition names ICN -> ICBN
- As of 2012 the IAPT has renamed the code editions to ICN, older code editions like the Vienna code and former release...
- 05:06 PM feature request #9619 (Closed): Model changes for taxon concept strategy
- In the taxonId meeting 2021-03-21 we agreed on the following changes
Class: Taxon
Attribute: conceptId
Type:... - 10:28 AM Revision 85a5a250 (cdmlib): add byKey method to CondensedDistributionRecipe
- 10:28 AM Revision 89dc9826 (cdmlib): cleanup
- 10:10 AM Revision e5209232 (cdmlib): fix exception in cdmlight
- 09:08 AM feature request #9616 (New): Reference for condensed distribution string
- mail WB:
Eine (auch jetzt) offene Frage ist, wie man mit Referenzen innerhalb des Strings oder für den gesamten Fa... - 08:56 AM Revision 67c233dc (cdmlib): cdmlight: move condensed distribution string to simple facts table
05/08/2021
- 01:35 AM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- we have discussed this
- 01:32 AM feature request #6718 (Duplicate): Constistent TypeDesignation representation creation
- Close this ticket as it is only a master (subtickets are tagged by "type designation")
- 01:19 AM bug #9588: Specimen Tree View: Duplicate derivatives
- The example data look ok, but not fully similar to the reported data structure from production. Therefore I suggest t...
- 01:12 AM bug #9609: Use DerivedUnit or FieldUnit for DetailsView of tree editor
- Generally this is not so urgent but should be done at some time.
- 01:11 AM bug #9615 (Feedback): Options for schema creation in empty data bases.
- The required functionality exists in the taxeditor:
therefore I suggest to close this tic...
05/07/2021
- 08:34 PM bug #9615 (New): Options for schema creation in empty data bases.
- stack trace from cdmlib-remote-webapp startup:
~~~~
Caused by: org.springframework.beans.BeanInstantiationExcept... - 04:49 PM Revision 163868e4 (cdmlib): ref #9607 trunk for MediaInfoServiceReader
- 04:48 PM Revision 388873cb (cdmlib): ref #9607 avoiding NPEs in case of file: URIs
- 04:46 PM Revision 67bc277e (cdmlib): ref #9607 ref #9203 less error-prone api for MediaUriTransformationProcessor - adapting test
- 04:28 PM Revision 4472b242 (cdmlib): ref #9607 MediaMetadataReader class hierarchy
- 03:43 PM Revision 220ce244 (cdmlib): ref #6359 finetuning for updatedObjects in ITaxonNodeDao
- 03:43 PM Revision f7c29eba (cdmlib): add sizeAll to SetMap
- 03:36 PM Revision 98034f39 (cdmlib): ref #9607 ref #9203 less error-prone api for MediaUriTransformationProcessor
- 03:36 PM Revision 3d7d94fd (cdmlib): ref #9607 removing obsolete methods
- 03:36 PM Revision d7840c7b (cdmlib): ref #9607 introducing IMediaInfoFactory interface
- 03:36 PM Revision 8c65aedb (cdmlib): ref #9607 fixing typo in class name, legacy method for old code using MediaMetadataFileReader, preparing for more metadata readers
- 03:36 PM Revision e43034c0 (cdmlib): fixing orthography
- 03:35 PM Revision 952aa532 (taxeditor): ref #9607 using MediaMetadataFileReader.legacyFactoryMethod in editor
- 03:34 PM Revision b903149c (taxeditor): ignoring symlinks in dev-linked-projects
- 03:33 PM Revision ffcfac39 (taxeditor): script for easy locally wiring taxeditor with cdmlib projects - half complete
- 02:58 PM Revision af7821ec (cdmlib): ref #6359 finetuning for updatedObjects in setSecundumForSubtree (distinguish taxon and originalsource)
- 02:13 PM Revision 06fb5f40 (cdmlib): ref #6359 adapt setPublishForSubtree to improved progress monitoring
- 02:12 PM Revision 43461f17 (cdmlib): cleanup
- 01:56 PM bug #6359 (In Progress): Remaining issues secundum for subtrees
- 01:54 PM Revision f752535b (cdmlib): ref #6359 make setPublishForSubtree and setSecundumForSubtree cancelabel
- 01:47 PM task #9614: Use underscore as word separator for all role based groups
- This is fixed and can be reviewed (except for the schema update which will is not yet enabled)
- 01:46 PM task #9614 (Resolved): Use underscore as word separator for all role based groups
- Applied in changeset commit:cdmlib|19400ec9f00bbda8b8539082ffb469999ed03977.
- 01:35 PM task #9614 (Closed): Use underscore as word separator for all role based groups
- such as Project_Manager, Editor_Reference and Editor_Extended_Create.
Currently they use also camel case and hyphen. - 01:46 PM Revision 19400ec9 (cdmlib): fix #9614 use underscore in role based group names
- 01:27 PM bug #9051: Role Project manager should not have right to edit users and creating a new user with missing rights results in two message-boxes
- I changed the title of the ticket as the incorrect evaluation of the rights for role_project_manager is the more crit...
- 09:53 AM bug #9051 (New): Role Project manager should not have right to edit users and creating a new user with missing rights results in two message-boxes
- Katja Luther wrote:
> How are you able to create a user without permission, the admin menu is available only if you ... - 08:37 AM bug #9051 (Feedback): Role Project manager should not have right to edit users and creating a new user with missing rights results in two message-boxes
- How are you able to create a user without permission, the admin menu is available only if you are admin or project ma...
- 01:24 PM bug #9612: ROLE_USER_MANAGER is missing as a group in FirstDataImporter
- This is fixed and can be reviewed.
- 12:41 PM bug #9612 (Resolved): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
- Applied in changeset commit:cdmlib|ee97649b15bfeb922508e97eec12aaecbd04535e.
- 10:13 AM bug #9612 (In Progress): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
- 09:52 AM bug #9612 (Closed): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
- ... for details see #9051
Or is it not wanted to have a group for this as default similar to Group_Project_Manager? - 01:24 PM feature request #9613: Use fixed uuids for roles project manager, publish and user manager
- this is fixed and can be reviewed. Only open issue is that the schema update to 5.23 is not yet activated so old data...
- 01:22 PM feature request #9613 (Resolved): Use fixed uuids for roles project manager, publish and user manager
- Applied in changeset commit:cdmlib|961bbcd9b37c84a728d020c601843c769ff1de52.
- 12:21 PM feature request #9613 (Closed): Use fixed uuids for roles project manager, publish and user manager
- Currently only Role_Admin and Role_Remoting seem to have fixed UUIDs though in class persistence.permission.Role UUID...
- 01:22 PM Revision a6a14c41 (cdmlib): minor
- 01:22 PM Revision 961bbcd9 (cdmlib): fix #9613 update script for old role uuids
- 12:40 PM Revision 0c924588 (cdmlib): ref #9613 use fixed role uuids for new GrantedAuthorities being roles and ref #9612 enlarge test data for FirstDataInserter
- 12:36 PM Revision 695765fe (cdmlib): handle uuids explicitly and ref #9612 fix role user manager uuid
- 12:36 PM Revision bb6091a3 (cdmlib): cleanup
- 12:36 PM Revision ee97649b (cdmlib): fix #9612 add user manager as group to firstDataInserter
- 12:36 PM Revision 0deb5ff1 (cdmlib): use saveOrUpdate in firstDataInserted.checkGroup()
- 12:36 PM Revision 3fb46e5c (cdmlib): cleanup
- 12:36 PM Revision 4cc9e6d9 (cdmlib): unignore firstDataInserted test
- 12:17 PM bug #9609: Use DerivedUnit or FieldUnit for DetailsView of tree editor
- as we want to release next week I move this ticket to the next milestone
- 12:16 PM task #9595 (Closed): Use DerivedUnit or DnaSample for DnaSampleGeneralDetailElement
- this works as expected.
- 12:09 PM task #9594 (Closed): Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
- Implemented the interface and reviewed the mediaspecimen details view. This worked as expected, so we can close this ...
- 11:42 AM feature request #8922 (Duplicate): Make setting of sec-Reference configurable when moving synonyms.
- this is a duplicate for #9340.
- 11:40 AM feature request #9575 (Resolved): Allow flag to include authors in taxon and name search in TaxEditor
- this should be fixed now.
- 11:36 AM Revision 42b9869e (taxeditor): ref #9575: correct handling of author flag for taxon search
- 10:17 AM feature request #9611 (Resolved): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- Please review.
- 10:16 AM bug #9601 (Closed): Set secundum for subTree does not work for misapplied names
- tested it with the new implementation in editor and it works as expected.
- 10:02 AM Revision cfae30ae (taxeditor): ref #9611: implement set secundum for MAN and pro parte syn
- 09:44 AM bug #8521 (Feedback): User details view: Change password button accessible for ROLE_USER_MANAGER
- This to me seems to be a duplicate for #8925. If this is true, please close the ticket as duplicate and remove target...
- 09:39 AM Revision 8939a1ff (taxeditor): ref #9587: clicking on an already open taxon only set the focus
- 09:39 AM Revision f9385c07 (taxeditor): fix #8659: refresh navigator after abcd import
- 08:59 AM bug #9587 (Resolved): Unsaved changes are lost when trying to open a taxon a second time
- Andreas Müller wrote:
> the cancel works now.
>
> However, this is still unclear: "Diese Operation wird den Edito... - 08:56 AM Revision 7406a8d5 (cdmlib): avoid NPE
- 12:47 AM Revision 9336738a (cdmlib): ref #6359 add session.clear()
- 12:37 AM Revision c0abf59d (taxeditor): fix potential NPE in ProgressMonitorClientManager
- 12:37 AM Revision b953bc70 (taxeditor): cleanup
- 12:34 AM Revision b5aafef0 (cdmlib): fix compile error
- 12:27 AM Revision 6d17bcd3 (cdmlib): cleanup
05/06/2021
- 11:45 PM Revision ec8277bd (cdmlib): ref #6359 use subprogressmonitor
- 11:44 PM Revision 0bb7d42f (cdmlib): ref #6359 fix update issue
- 11:22 PM Revision e067bb50 (cdmlib): ref #6359 improve partition handling
- 09:51 PM bug #9588: Specimen Tree View: Duplicate derivatives
- Test data: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/d245083e-3bda-435f-9bb3-bdc...
- 07:03 PM bug #9588: Specimen Tree View: Duplicate derivatives
- I will do the review after the release as I have no test data on test
- 09:00 PM Revision c6ecb751 (cdmlib): cleanup
- 09:00 PM Revision 74e9f695 (cdmlib): ref #9598 fix generics for common deduplicate usage
- 08:59 PM Revision cfa25f63 (cdmlib): ref #6359 improve updated objects behavior
- 08:45 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- This is a blocker as the current behavior by default sets the error sec and the syn sec which might be unexpected for...
- 06:54 PM feature request #9611 (Closed): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
- this is a follow up from #9601
Parameters are similar to setPublishForSubtree.
The labels should make clear tha... - 08:32 PM Revision 3cba463f (cdmlib): ref #9598 some parameter renaming and improve updated objects behavior
- 07:51 PM bug #9598 (Closed): Deduplicate NamedAreas with >1 representations and include label in search
- I works.
I changed the code the way that it calls the existing method to avoid redundant code.
As this does not... - 07:47 PM Revision 69d199a5 (cdmlib): cleanup
- 07:47 PM Revision 013cea82 (cdmlib): ref #9598 remove redundant code
- 07:40 PM bug #9587 (Feedback): Unsaved changes are lost when trying to open a taxon a second time
- 07:40 PM bug #9587: Unsaved changes are lost when trying to open a taxon a second time
- the cancel works now.
However, this is still unclear: "Diese Operation wird den Editor speichern. Ebenso werden al... - 07:16 PM bug #9605 (Feedback): Disable Details View for structure and property trees in character editor
- Generally this works. However, there is a special situation which shows a strange behavior:
* open character edito... - 07:11 PM feature request #9575: Allow flag to include authors in taxon and name search in TaxEditor
- The problem seems to be flag direction. With the flag NOT set, it works, with the flag set, it does not work. But it ...
- 07:06 PM feature request #9575 (Feedback): Allow flag to include authors in taxon and name search in TaxEditor
- This does not work correctly yet. I searched for "Arenario Ad*" on rem_conf_am with no result. While search for "Aren...
- 07:02 PM bug #9603 (Closed): Sorting in status drop down of distribution editor
- Works as expected and also methods that depend on the change were adapted.
- 06:55 PM bug #9601: Set secundum for subTree does not work for misapplied names
- please review
- 06:52 PM bug #9601 (Resolved): Set secundum for subTree does not work for misapplied names
- Applied in changeset commit:cdmlib|3b85f95996257c66bec3f57c82deac14356df375.
- 06:52 PM Revision 3b85f959 (cdmlib): fix #9601 allow misapplied names and proparte Syns to set secundum for subtree
- 06:45 PM Revision b7440493 (cdmlib): remove unnecessary second load
- 06:44 PM Revision b39f1ad2 (cdmlib): cleanup
- 05:38 PM Revision 1aacbc16 (cdmlib): revert unwanted CommonService commit
- 05:20 PM Revision bbb2488d (taxeditor): add service.media to cdmlib exports
- 05:14 PM Revision ca3d3181 (taxeditor): clean up commit 17c6b2e13c7ac
- 04:14 PM Revision 49e5e5a6 (cdmlib): cleanup
- 04:14 PM Revision 3b1da35f (cdmlib): ref #6359, ref #3740 error handling for setPublishForSubtree
- 03:43 PM Revision 48334f5f (taxeditor): ref #9607 adapting to changes in image metadata factories - CdmApplicationRemoteConfiguration
- 03:35 PM bug #8659 (Closed): Taxon navigator: not refreshed after ABCD file import
- this is fixed now.
- 03:34 PM Revision 17c6b2e1 (taxeditor): ref #9607 adapting to changes in image metadata factories
- 03:23 PM bug #9610 (New): MediaMetadataFileReader (formerly in CdmImageInfo) loads same image file multiple times
- For one and the same image file the UriUtils methos `getInputStream()` and `getResourceLength()` are being used multi...
- 03:09 PM Revision 3526156e (cdmlib): ref #9607 moving MediaMetadataService URI transformation to DefaultMediaTransformations
- 02:55 PM task #9607 (In Progress): read image metadata from MediaInfoService if available
- 02:53 PM Revision 8674bf53 (cdmlib): ref #9607 moving and renaming test class from commons to services
- 02:53 PM Revision 3f04dd4e (cdmlib): ref #9607 replacing class local factory methods and heplers in CdmImageInfo by service layer factory classes and metadata 'reader' class
- 11:15 AM Revision 40113a9f (cdmlib): ref #6359 error handling for setSecundumForSubtree
- 11:04 AM Revision f6dfbc26 (cdmlib): cleanup
- 09:04 AM Revision fbbe5da0 (taxeditor): ref #9609: rename details element classes
- 08:59 AM bug #9609 (New): Use DerivedUnit or FieldUnit for DetailsView of tree editor
- same reason as for #9594
Implement new details view elements for tree editor and use derived unit and field unit o...
05/05/2021
- 06:06 PM bug #9608 (New): UriUtils to use HTTP HEAD requests where possible
- where UriUtils need to use HTTP HEAD requests :
* getResourceLength()
* more ?
This can be performance criti... - 05:52 PM task #9607 (Closed): read image metadata from MediaInfoService if available
- The BGBM digilib image server is now complemented by an instance of the [MediaInfoService](https://github.com/cyberta...
- 05:43 PM Revision 96288777 (cdmlib): handle null values in TaxonNodeByRankAndNameComparator
- 03:15 PM Revision 9201d8aa (taxeditor): cleanup, fix field unit in details views
- 01:04 PM Revision e00fef3e (cdm-server): logging of remoting requests with duration per default
- 11:29 AM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
- Andreas Müller wrote:
> in DetailsViewE4.setInput() there is the following code:
>
> ~~~
> if (input instanceof... - 10:58 AM Revision e21cf4b8 (taxeditor): ref #9603: adapt order of named areas in distribution editor
- 10:57 AM bug #9603 (Resolved): Sorting in status drop down of distribution editor
- please review.
- 10:40 AM feature request #6718 (Feedback): Constistent TypeDesignation representation creation
- there two additional ticket one in cdmlib and one in cdmlib-remote (https://dev.e-taxonomy.eu/redmine/projects/edit/i...
- 09:54 AM Revision 8cec01d8 (taxeditor): fix #9605: disable details for termtree in character editor
- 09:53 AM bug #9605: Disable Details View for structure and property trees in character editor
- please review
- 09:52 AM bug #9605 (Resolved): Disable Details View for structure and property trees in character editor
- Applied in changeset commit:taxeditor|8cec01d85742928dc10fb695d2f778f627c8414a.
- 09:24 AM Revision 99e6c066 (cdmlib): fix StringUtils dependency
- 08:53 AM Revision 10cae443 (cdmlib): remove warnings
- 08:38 AM Revision d27905b0 (cdmlib): cleanup
- 08:36 AM Revision 1d2247b4 (cdmlib): cleanup
05/04/2021
- 11:49 PM Revision 69b464fd (cdmlib): cleanup
- 11:47 PM Revision 03a6bc68 (cdmlib): ref #9590 similary fix clone for TaxonName/NomenclaturalSource
- 11:39 PM Revision d4149686 (cdmlib): ref #9590 fix swap test by fixing SecundumSource clone method and remove incorrect Cascade.Delete handling in swap method
- 10:43 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- Ahh, correct, there were also the other methods. I corrected the 3rd one now so everything should be correct now. Can...
- 04:00 PM bug #9606 (Resolved): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- please review
- 03:58 PM bug #9606 (In Progress): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- 03:58 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- as said there definitely an NPE in this code line from above
~~~
taxonBase.isInstanceOf(Taxon.class)){
~~~~
T... - 03:55 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- Andreas Kohlbecker wrote:
> in these lines of countByTitle() it is obvious:
>
> ~~~java
> TaxonBase<?> taxonBase... - 03:52 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- But it is not forbidden to pass a null value, and if you follow the method that is called, there you have null values...
- 01:59 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- in these lines of countByTitle() it is obvious:
~~~java
TaxonBase<?> taxonBase = taxonService.load(occurrenceConf... - 01:55 PM bug #9606 (Feedback): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- Can you give a bit more inside. Any stacktrace available for the NPE?
What exactly is about taxon, taxonbase and nam... - 01:20 PM bug #9606 (Closed): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
see taxon, taxonBase and name in these methods
* OccurrenceServiceImpl.countByTitle(IIdentifiableEntityServiceCo...- 10:42 PM Revision 5f196d28 (cdmlib): ref #9606 fixing also the 3rd potential NPE
- 10:05 PM Revision 8ae625ea (cdmlib): cleanup
- 10:03 PM Revision 1a4b9c63 (cdmlib): ref #9603 adapt TypeDesignationStatusComparator to new semantic of OrderedTermComparator
- 04:13 PM Revision 5939425d (cdm-dataportal): ref #9599 commenting looging
- 04:09 PM Revision 97fc0f95 (cdmlib): ref #9606 fix another potential NPE
- 03:55 PM Revision d9a9f2b1 (cdmlib): ref #9606 fix potential NPE
- 03:27 PM task #9599 (Feedback): remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
- The tagged titles of TaxonName and TaxonBase do not include the nomenclatural reference
In the portal display of t... - 03:00 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- Ok, for model updates it may be problematic. I rather thought on all other taks, like data cleaning and so on, when I...
- 01:36 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- Andreas Kohlbecker wrote:
> wouldn't it be anyway much better to do such cleanup tasks in general via the DAO layer?... - 01:24 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- wouldn't it be anyway much better to do such cleanup tasks in general via the DAO layer?
- 02:33 PM Revision 96ca9010 (cdmlib): ref #9603: fix natural sort order
- 02:22 PM bug #9603 (In Progress): Sorting in status drop down of distribution editor
- 02:21 PM bug #9603 (Resolved): Sorting in status drop down of distribution editor
- 02:20 PM Revision 641175e9 (taxeditor): ref #9603: adapt to new termOrder values
- 12:56 PM bug #9185: DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404 HTTP response
- review: scan logs
- 12:56 PM bug #9185 (Resolved): DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404 HTTP response
- Applied in changeset commit:cdmlib|679982a065408133f36b72f39d2f70d4fe2856fa.
- 11:41 AM bug #9185: DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404 HTTP response
- This error makes cdm-server log hardly readable, hence, it should be solved rather soon.
- 12:56 PM Revision 679982a0 (cdmlib): fix #9185 catching and logging NPE and NestedSevletExecptions properly at appropriate levels
- 12:56 PM Revision 039f88e8 (cdmlib): clean up
- 12:38 PM Revision 19732dea (cdmlib): ref #9603: add symbol and symbol2 to TermOrder enum
- 12:21 PM Revision 0aba8158 (taxeditor): add symbol1 and symbol2 to sort order of drop down in distribution editor
- 12:18 PM Revision 2d805720 (cdmlib): fix handling of references for misapplied names
- 12:18 PM Revision 316607fa (cdmlib): ref #9603: add new Comparator for term.symbol und term.symbol2
- 10:03 AM bug #9605 (Closed): Disable Details View for structure and property trees in character editor
- Changes of property tree or structure tree are not persisted in character editor therefore it should not be possible ...
- 10:02 AM Revision fb6d642f (taxeditor): cleanup
- 10:02 AM Revision 8aaabf50 (taxeditor): ref #9595 , ref #5575 use DnaSampleCacheStrategy in DerivateLabelProvider
- 10:02 AM Revision 04443665 (taxeditor): cleanup
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