Activity

From 04/29/2021 to 05/28/2021

05/28/2021

08:34 PM bug #9636: NPE in DeterminationDetailElement: Please review. Andreas Müller
08:33 PM bug #9636 (Resolved): NPE in DeterminationDetailElement: Applied in changeset commit:taxeditor|c7641204b013ae501d942505847201e7617d4d66. Andreas Müller
08:30 PM bug #9636 (Closed): NPE in DeterminationDetailElement: this is due to changes in CdmSectionPart.setFormInput() with commit 8aaabf5035f where derivedUnitFacade is replaced b... Andreas Müller
12:00 PM bug #9398 (Resolved): ObjectNotFoundException when removing a synonym that is used as NameInSource: Applied in changeset commit:cdmlib|fab7562d10933769c27f26176f401cb92d75e234. Katja Luther
09:02 AM bug #9630 (In Progress): Make the handling of computed description configurable: Katja Luther

05/27/2021

04:06 PM bug #9635 (Closed): LazyInitializationException (LIE) in TaxonPortalContoller: http://api.cybertaxonomy.org/euromed/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1&do... Andreas Kohlbecker
03:55 PM bug #9634 (Closed): Update AgentBase and DescriptiveDataSet titleCache length where needed: In some databases the AgentBase titleCache has only length 255, not 800. Also the DescriptiveDataSet titleCache has u... Andreas Müller
02:24 PM bug #9600 (In Progress): Delete of taxon with unselected name delete returns warning: The exceptions where caused by the names of the synonyms (but there are more messages than synonyms, this needs to be... Katja Luther
11:46 AM bug #9629 (Resolved): Better handling of OptionalDataException: the exception is hanlded now, please review. Katja Luther
11:12 AM bug #9630 (Resolved): Make the handling of computed description configurable: this is fixed, please review. Katja Luther

05/21/2021

02:55 PM bug #9588 (Closed): Specimen Tree View: Duplicate derivatives: The link in the ticket description works now as expected so we can close this ticket. Andreas Müller
10:20 AM task #9576: Add tests for homotypic group name comparator: Andreas Müller wrote:
> Does the unified HomotypicGroupTaxonComparator include the tests then?
There is not need ... Katja Luther
10:12 AM task #9576: Add tests for homotypic group name comparator: Does the unified HomotypicGroupTaxonComparator include the tests then? Andreas Müller
09:15 AM task #9576 (Rejected): Add tests for homotypic group name comparator: The HOmotypicalGroupNameCOmparator is not used anymore therefore I would remove it and close this ticket because we d... Katja Luther
08:55 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > diese Liste dürfte vollständig sein https://www.iapt-taxon.or... Andreas Kohlbecker
08:01 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: looks like the final list is still missing Andreas Müller
08:24 AM bug #9529: Correct formatting for bibliographic in-reference separation: This was mostly done in 5.22 Andreas Müller

05/20/2021

05:05 PM task #8081 (Closed): Complete removal of redmine communication hub instances: removed all remains from
* edit-int
* edit-test
* edit-staging
* edit-com Andreas Kohlbecker
03:09 PM feature request #5573 (Closed): Cache Strategy for Media Specimen required: tested the workaround on nightly and it worked as expected. Katja Luther
03:04 PM feature request #5573: Cache Strategy for Media Specimen required: Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The failing test is fixed now (titleCa... Katja Luther
12:07 PM feature request #5573: Cache Strategy for Media Specimen required: Katja Luther wrote:
> Andreas Müller wrote:
> > The failing test is fixed now (titleCache is set to null and a prop... Andreas Müller
11:35 AM feature request #5573: Cache Strategy for Media Specimen required: Andreas Müller wrote:
> The failing test is fixed now (titleCache is set to null and a property change event is thro... Katja Luther
03:04 PM feature request #9326 (Closed): Show all authors in bibliographic references: I guess this can be closed as it is about team formatting and full stop separation which both is fixed.
Open issues ... Andreas Müller
10:08 AM feature request #9326 (Feedback): Show all authors in bibliographic references: Wolf-Henning Kusber wrote:
> Habe die Beispiele angeschaut, Uptdate der Caches war notwendig.
> Fast alles ist jetz... Andreas Müller
08:54 AM feature request #9326: Show all authors in bibliographic references: https://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/reference/843e5544-2081-4547-98aa-418db8fb1f85 Andreas Müller

05/19/2021

05:38 PM feature request #5573: Cache Strategy for Media Specimen required: The failing test is fixed now (titleCache is set to null and a property change event is thrown). However, as the even... Andreas Müller
04:50 PM bug #9629: Better handling of OptionalDataException: The general problem was reported in #9358 already. Andreas Müller
12:52 PM bug #9629: Better handling of OptionalDataException: I guess this is fast to implement as we only need to search for "java.io.OptionalDataException" in the stacktrace.
A... Andreas Müller
12:31 PM bug #9629 (In Progress): Better handling of OptionalDataException: This exception should be handled and the user should be informed to restart the editor.
~~~ text
last remote meth... Katja Luther
04:48 PM feature request #9326: Show all authors in bibliographic references: Habe die Beispiele angeschaut, Uptdate der Caches war notwendig.
Fast alles ist jetzt gut umgesetzt. 19.05.2021
E... Wolf-Henning Kusber
03:12 PM bug #9633 (New): startup option to create an initial classfication: To be implemented into `FirstDataInserter`
in case `createInitialClassification` is `true` and there is no classif... Andreas Kohlbecker
03:04 PM bug #9632 (New): Handle putXXX and remove with aspectj where necessary: See e.g. TODO in Media.putTitle() Andreas Müller
02:14 PM task #9607 (Closed): read image metadata from MediaInfoService if available: Andreas Kohlbecker
01:27 PM feature request #8471 (Closed): Computed descriptions should be disabled in TaxEditor: New tickets created. Katja Luther
01:06 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: This ticket can be closed once the new 2 tickets are created. Andreas Müller
01:06 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: >Another issue is that sections can be opened now. E.g. if there is an annotation I can't see it's content as I can't... Andreas Müller
12:59 PM feature request #8471 (Feedback): Computed descriptions should be disabled in TaxEditor: The UUID and ID fields can not be copied anymore. In general it might be a good idea not to fully disable fields but ... Andreas Müller
01:26 PM bug #9631 (New): New implementation for disable details/supplemental data views: from #8471:
The UUID and ID fields can not be copied anymore. In general it might be a good idea not to fully disa... Katja Luther
01:24 PM bug #9630 (Closed): Make the handling of computed description configurable: from #8471:
This ticket is not meant to completely make the computed descriptions invisible. By default they shoul... Katja Luther
01:12 PM bug #9587 (Closed): Unsaved changes are lost when trying to open a taxon a second time: Katja Luther wrote:
> Andreas Müller wrote:
> > This does not seem to work if a taxon is used multiple times. E.g. ... Andreas Müller
12:25 PM feature request #9622: Improve remoting progress monitor handling: Andreas Müller wrote:
> >bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View z... Katja Luther
12:52 AM feature request #9622: Improve remoting progress monitor handling: >bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View zeigt er "No subtask name"... Andreas Müller
11:24 AM bug #6427: Improve Matching for Reference.title and abbrevTitle: This is not so urgent anymore since we have the MatchStrategyFactory and especially the ParsedXxxMatchers. However, f... Andreas Müller
10:58 AM feature request #8789: How can we semantically handle characters like "partial inflorescence arrangement - distance 1st to 2nd bract": AM:
Is this still an open issue? Is it urgent?
NoK:
für derlei Fälle habe ich in den letzten Monaten (bei Lactucin... Andreas Müller
10:57 AM task #6284 (Closed): media.bgbm.org available via https: Meanwhile, the media servers functionality has moved to https://image.bgbm.org/ and https://pictures.bgbm.org/
Both ... Andreas Kohlbecker
10:52 AM task #6284 (Feedback): media.bgbm.org available via https: Is this still an open issue? I think we do not receive media from https://media.bgbm.org/erez/ anymore but I may be w... Andreas Müller
10:55 AM feature request #6929 (Feedback): handling of misapplied names without accepted name: Is this still an open issue. The ticket is 3 years old and I guess it is fixed but I am not sure if I understand the ... Andreas Müller
10:33 AM bug #6359 (Closed): Remaining issues secundum for subtrees: Also created a new ticket for better update result handling: #9628
So we can close this ticket now. Andreas Müller
10:27 AM bug #6359: Remaining issues secundum for subtrees: Created a follow-up ticket #9627 for correct update result handling on editor side Andreas Müller
10:31 AM task #9628 (New): Improve update result handling for monitored operations: Currently it is handled in AbstractUtility.createUpdateResultReport() since #6359.
Probably we should try to unify... Andreas Müller
10:19 AM bug #9627 (New): Handle updated objects correctly in monitored operations in taxeditor: Currently in AbstractUtility.executeMoniteredOperation()
~~~
Set<Taxon> taxaToUpdate = getTaxaToUpdate(firstRemot... Andreas Müller
08:45 AM feature request #9611 (Closed): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Andreas Müller wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > Can we have more space between Pro Parte... Katja Luther

05/18/2021

06:09 PM feature request #9611 (Feedback): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Andreas Müller wrote:
> Katja Luther wrote:
> Can we have more space between Pro Parte and Overwrite existing ... t... Andreas Müller
06:00 PM feature request #9433 (Closed): Improve titleCache generation for misapplications: Andreas Müller
05:51 PM feature request #9433 (Resolved): Improve titleCache generation for misapplications: Applied in changeset commit:cdmlib|64223995926d2072cd149e408ec437c64c8c7603. Andreas Müller
03:22 PM bug #1924: CIHORIEAE in-references in Footnotes: The "publisher" issue (from attachement) was moved to new ticket #9626.
Only open issue: verbatim year Andreas Müller
01:20 PM bug #6359: Remaining issues secundum for subtrees: So the progress monitor handling is fixed, we can close this ticket. A new ticket for user friendly result report and... Katja Luther
12:15 PM feature request #8471 (Resolved): Computed descriptions should be disabled in TaxEditor: Andreas Müller wrote:
> The description itself is not yet disabled in details view (but it is in suppl data view). T... Katja Luther
12:02 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: Andreas Müller wrote:
> The "Types" field for ordinary descriptions is now enabled but shouldn't because it is read ... Katja Luther
10:09 AM feature request #8471: Computed descriptions should be disabled in TaxEditor: Andreas Müller wrote:
> I think we should reenable the "delete" menu item as it should always be possible to remove ... Katja Luther
09:04 AM feature request #8471: Computed descriptions should be disabled in TaxEditor: Andreas Müller wrote:
> The description itself is not yet disabled in details view (but it is in suppl data view). T... Katja Luther
11:52 AM feature request #5573: Cache Strategy for Media Specimen required: Andreas Müller wrote:
> Katja Luther wrote:
> > Shouldn't the motif be part of the titlecache if no other field is ... Katja Luther
12:10 AM task #9607 (Resolved): read image metadata from MediaInfoService if available: Andreas Kohlbecker

05/17/2021

06:05 PM bug #8521 (Duplicate): User details view: Change password button accessible for ROLE_USER_MANAGER: this is handled with #8925 Katja Luther
03:29 PM bug #6359: Remaining issues secundum for subtrees: Katja Luther wrote:
> I tried to adapt the progress monitor handling like for the cache update and the output in edi... Andreas Müller
03:26 PM bug #6359: Remaining issues secundum for subtrees: I tried to adapt the progress monitor handling like for the cache update and the output in editor looks like this:
... Katja Luther
03:00 PM bug #6359: Remaining issues secundum for subtrees: I think the usage of submonitors needs to be adapted, I already did this for cache update, there the submonitor lab... Katja Luther
02:27 PM task #9624: Centralize team formatting and fix et al. position handling: AM: ... wird bei den err. sec. (und auch syn. sec. von pp-Synonymen) das „Kurzzitat“ noch mit >2 Autoren angezeigt. A... Andreas Müller
01:37 PM bug #9590 (Closed): ObjectDeletedException when swap synonym and accepted taxon: Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also there is a looot of commented cod... Katja Luther
01:35 PM bug #2969 (Closed): Correct formatting for bibliographic references: The cache strategies are split now (e.g. #9604). Examples for correct formatting bibliographic references are given i... Andreas Müller
01:24 PM feature request #9611 (Resolved): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Katja Luther wrote:
> > > > Andreas M... Katja Luther
12:47 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > implement... Andreas Müller
12:23 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > implemented. Please adapt UI.
> >
>... Katja Luther
12:42 PM bug #9587 (Resolved): Unsaved changes are lost when trying to open a taxon a second time: Katja Luther
12:39 PM bug #9587: Unsaved changes are lost when trying to open a taxon a second time: Andreas Müller wrote:
> This does not seem to work if a taxon is used multiple times. E.g. if you search for "Sectes... Katja Luther
11:06 AM bug #9588: Specimen Tree View: Duplicate derivatives: Andreas Kohlbecker wrote:
> I don't understand why you are changing the category, this clearly was a bug in cdmlib-s... Andreas Müller
10:54 AM bug #9588: Specimen Tree View: Duplicate derivatives: I don't understand why you are changing the category, this clearly was a bug in cdmlib-services Andreas Kohlbecker
11:00 AM task #9623 (Closed): Remove TaxonBaseShortSecCacheStrategy: ok Katja Luther
10:58 AM feature request #7305 (Closed): [Dicuss] searching for authorteam with more than three members is incomplete: works as expected. Katja Luther
09:31 AM bug #9625 (Closed): Selection for team members does not filter on persons only: Andreas Müller
09:31 AM bug #9625 (Closed): Selection for team members does not filter on persons only: Andreas Müller
09:22 AM bug #9529 (Closed): Correct formatting for bibliographic in-reference separation: WGB: ich bin auf jeden Fall für das Komma!
NoK: Bin ... Walters Meinung Andreas Müller

05/16/2021

11:53 PM feature request #2854 (Closed): Implement part of other title for part of articles and part of booksections: The possible open issue is not relevant anymore as BM imports are mostly done. Also the issue is logged in case it is... Andreas Müller
11:44 PM bug #9373 (Feedback): In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected: Andreas Müller

05/15/2021

02:35 AM feature request #9433 (Feedback): Improve titleCache generation for misapplications: > Wenn wir das auf sensu ändern wäre es auch schön, wenn man an dieser Stelle auch Autor und nom. Status weglassen wü... Andreas Müller
02:27 AM feature request #3667 (Closed): Implement correct implementation of original spelling in publications: Andreas Müller wrote:
> Still need to check/discuss if this is already the case in dataportal and print publication
... Andreas Müller
02:25 AM feature request #3667: Implement correct implementation of original spelling in publications: Still need to check/discuss if this is already the case in dataportal and print publication Andreas Müller
02:19 AM bug #6960 (Duplicate): Improve reference cachestrategy: This duplicates #4338 Andreas Müller
02:18 AM bug #6960: Improve reference cachestrategy: > webpage without title duplicates the URI
can't reproduce this anymore, seems to be fixed in the meanwhile Andreas Müller
02:05 AM feature request #3764: Improve formatting for reference type Section: Final tests should be written. See also #6499. ~~Then move back to 3.8 if no major changes needed.~~ There were a cou... Andreas Müller
02:00 AM bug #3872 (Worksforme): Title cache is null if the reference is a journal: I can't reproduce this anymore. Maybe it was fixed with the ReferenceDefaultCacheStrategy refactoring. Andreas Müller
01:49 AM bug #4773 (Worksforme): Lampranthus throws IndexOutOfRange exception: The exception is not thrown anymore for such a combination and for the concrete taxon in caryo. Also the result looks... Andreas Müller
01:35 AM bug #1815 (Closed): setInReference needs to reset the title cache: This seems to be fixed. See also tests in ReferenceDefaultCacheStrategy Andreas Müller
01:27 AM task #1404 (Rejected): References cache strategy should always render bibliographic references: This is not relevant anymore. Current implementation works for users. Also there are 2 caches now for abbrev and full... Andreas Müller

05/14/2021

11:43 PM feature request #9530 (Closed): Add pages to bibliographic book sections: Andreas Müller
11:41 PM feature request #9530 (Resolved): Add pages to bibliographic book sections: Applied in changeset commit:cdmlib|957a9a67a088b3e9f30bf2ac712aeb107d36b6d6. Andreas Müller
10:58 PM bug #9529: Correct formatting for bibliographic in-reference separation: und noch eine Frage zur Formatierung. In #9529 haben wir ja beschlossen, dass bibliographische In-Referenzen mit „. –... Andreas Müller
10:35 PM bug #5684 (Worksforme): NPE when trying to move a presence-absence term within the vocabulary: This works for me and can be closed. Andreas Müller
10:25 PM feature request #9326 (Resolved): Show all authors in bibliographic references: This should be fixed now. Maybe before review an (title)cache update is necessary. For single teams this can be done ... Andreas Müller
09:33 PM bug #6749 (Closed): No media is created for new mediaSpecimen: This works as expected Andreas Müller
09:14 PM task #9624 (Resolved): Centralize team formatting and fix et al. position handling: This is generally fixed. Fine tuning is still required for correct et al. positions. Email was sent to users. Andreas Müller
07:43 PM task #9624 (Closed): Centralize team formatting and fix et al. position handling: Formatting of teams is done at many places in cdmlib (TeamDefaultCacheStrategy, NomenclaturalSourceFormatting, TaxonB... Andreas Müller
08:07 PM feature request #7305 (Resolved): [Dicuss] searching for authorteam with more than three members is incomplete: This should be fixed with #9624. Before reviewing you may need to run the cache updater. Andreas Müller
08:00 PM feature request #6662 (Closed): Adapt person formatting, set initials behind lastname: Andreas Müller
07:57 PM feature request #6504 (Closed): Bibliographic references should not start with firstname.: This should be fixed due to new cache strategy which puts initials after family name in biblo teams Andreas Müller
04:15 PM feature request #9597 (Closed): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting: implementation and test case looks ok. As there are no test to be adapted in the dataportal, this ticket can be closed. Andreas Kohlbecker
01:21 PM task #9623: Remove TaxonBaseShortSecCacheStrategy: I think there is not much to review but just to let you know that I have done this. Andreas Müller
01:18 PM task #9623 (Resolved): Remove TaxonBaseShortSecCacheStrategy: Applied in changeset commit:cdmlib|e80d154bb2d5faf5c1219935eacc16132a22e82c. Andreas Müller
01:13 PM task #9623 (Closed): Remove TaxonBaseShortSecCacheStrategy: The cache strategy is not used anymore and TaxonBaseDefaultCacheStrategy now implements sec referencing the same way ... Andreas Müller
12:48 PM feature request #9433 (Resolved): Improve titleCache generation for misapplications: Applied in changeset commit:cdmlib|40708c65957005aa8723235844e7b9c3418f4525. Andreas Müller
01:14 AM feature request #3666 (Closed): Implement original spelling in name parser: Andreas Müller
12:31 AM feature request #3666 (Resolved): Implement original spelling in name parser: Andreas Müller

05/13/2021

02:04 PM feature request #9270 (Feedback): show original spelling on taxon page: should we close this as duplicate (for #7781)? Andreas Müller
02:01 PM feature request #9270: show original spelling on taxon page: >Ich erinnere mich jetzt nicht daran warum das nach dem Namen kommt, das war aber sicherlich eine Anfrage/Anforderung... Andreas Müller
01:50 PM bug #7781: original spelling is missing for accepted taxon in taxon page: Also check if orginal name part is in italics as #3667 is now implemented Andreas Müller
01:45 PM feature request #3667 (Resolved): Implement correct implementation of original spelling in publications: Applied in changeset commit:cdmlib|9f804efe2c1ddc0baaa3b1491d222e45acd84dd2. Andreas Müller
12:24 PM task #9604 (Closed): Split bibliographic reference cache strategy and nomenclatural formatter + orginal source formatter: Andreas Müller
12:22 PM feature request #3665 (Closed): Further implementation of original spelling name caching: I think this can be closed. No obvious feature from the ticket description/discussion seems to be missing. Italics fo... Andreas Müller
11:38 AM feature request #9622 (In Progress): Improve remoting progress monitor handling: Andreas Müller
09:28 AM feature request #9622 (In Progress): Improve remoting progress monitor handling: Open issues:
KL:
bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View zeig... Andreas Müller

05/12/2021

05:46 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: I think we should reenable the "delete" menu item as it should always be possible to remove computed data again. Mayb... Andreas Müller
05:42 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: The "Types" field for ordinary descriptions is now enabled but shouldn't because it is read only (should be set only ... Andreas Müller
05:39 PM feature request #8471 (Feedback): Computed descriptions should be disabled in TaxEditor: The description itself is not yet disabled in details view (but it is in suppl data view). This needs to be fixed. Andreas Müller
05:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: The preferences to make the aggregated data either disabled, invisible or enabled is still missing, correct?
Shoul... Andreas Müller
08:46 AM feature request #8471 (Resolved): Computed descriptions should be disabled in TaxEditor: Missed to check in the label provider, please review now. There is still a missing issue, the details of the descript... Katja Luther
08:30 AM feature request #8471 (In Progress): Computed descriptions should be disabled in TaxEditor: Katja Luther
08:22 AM feature request #8471 (Resolved): Computed descriptions should be disabled in TaxEditor: please review. Katja Luther
05:15 PM bug #9589 (Closed): Move synonym to another accepted taxon ignores the selected new sec reference: works as expected Andreas Müller
05:01 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: Katja Luther wrote:
> Andreas Müller wrote:
> > Also there is a looot of commented code still in the methods. Also ... Andreas Müller
05:00 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: Katja Luther wrote:
> Andreas Müller wrote:
> > To me it looks like the code commented with "//Move descriptions to... Andreas Müller
02:52 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: I think this ticket can be closed? Katja Luther
02:51 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: Andreas Müller wrote:
> Also there is a looot of commented code still in the methods. Also some warning.
> Can you ... Katja Luther
02:31 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: Andreas Müller wrote:
> As the 2 methods are now distinguished only by a boolean parameter we should add a ticket to... Katja Luther
02:27 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: Andreas Müller wrote:
> To me it looks like the code commented with "//Move descriptions to new taxon" is fully redu... Katja Luther
04:25 PM bug #6359: Remaining issues secundum for subtrees: Katja Luther wrote:
> * make cancelable -> maybe we should show how many items already changed, especially because t... Andreas Müller
04:21 PM bug #6359: Remaining issues secundum for subtrees: Katja Luther wrote:
> review:
>
> * add progress monitor -> the submonitors not shown in the status of the editor... Andreas Müller
03:56 PM bug #6359 (Feedback): Remaining issues secundum for subtrees: review:
* add progress monitor -> the submonitors not shown in the status of the editor -> maybe a new ticket?
* ... Katja Luther
03:01 PM bug #6359: Remaining issues secundum for subtrees: Katja, kannst du das Ticket grundsätzlich schon mal reviewen? Wir müssen noch eine Lösung finden für die Auswertung d... Andreas Müller
04:09 PM feature request #9611 (Feedback): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Katja Luther wrote:
> Andreas Müller wrote:
> > implemented. Please adapt UI.
>
> The UI is adapted.
Can we h... Andreas Müller
02:56 PM feature request #9611 (Resolved): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Andreas Müller wrote:
> ... and the preference if this is fast. Otherwise open new ticket as it is not really urgent... Katja Luther
12:10 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Andreas Müller wrote:
> implemented. Please adapt UI.
The UI is adapted. Katja Luther
10:20 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: ... and the preference if this is fast. Otherwise open new ticket as it is not really urgent. Andreas Müller
10:07 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: implemented. Please adapt UI. Andreas Müller
10:03 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> >
> > > A bit problematic ist hte "Overw... Katja Luther
09:55 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Katja Luther wrote:
> Andreas Müller wrote:
>
> > A bit problematic ist hte "Overwrite existing sec refs for sele... Andreas Müller
09:47 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also I guess by default we should swit... Katja Luther
09:44 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Katja Luther wrote:
> Andreas Müller wrote:
> > Also I guess by default we should switch off "apply to MAN err. sec... Andreas Müller
09:26 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Andreas Müller wrote:
> Also I guess by default we should switch off "apply to MAN err. sec." and "apply to ppsyn sy... Katja Luther
09:22 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Andreas Müller wrote:
> A bit problematic ist hte "Overwrite existing sec refs for selected relations option which... Katja Luther
03:16 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: Andreas Müller wrote:
> Die Liste enthält leider keine Abkürzungen, um die es aber gerade ging.
Aus einem Chat m... Andreas Kohlbecker
12:26 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: Rein inhaltlich. Mindestens für das Projekt PhycoBank benötigen wir den Link zum Vollzitat. Ich gehe davon aus, das d... Wolf-Henning Kusber
12:23 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: Zudem die Frage, wie mit den Langformen umzugehen ist. Bislang hatten wir uns darauf geeinigt, lediglich DOIs oder UR... Andreas Müller
12:19 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: Die Liste enthält leider keine Abkürzungen, um die es aber gerade ging. Letztlich kann ich nur raten. War der "Vienna... Andreas Müller
12:11 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: Isn't this a good start? We can add more lists on demand. Andreas Kohlbecker
11:40 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: Andreas Kohlbecker wrote:
> diese Liste dürfte vollständig sein https://www.iapt-taxon.org/historic/list-of-Codes.ht... Andreas Müller
11:33 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: diese Liste dürfte vollständig sein https://www.iapt-taxon.org/historic/list-of-Codes.htm
Andreas Kohlbecker
11:27 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: Yes, will do two lissts, (i) a short citation, and (ii) correct citations with help of the literature in our library. Wolf-Henning Kusber
11:04 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: here is one kind of list https://www.iapt-taxon.org/historic/index.htm Andreas Kohlbecker
10:48 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: Andreas Müller wrote:
> But as I mentioned above I need a full list of all correct abbreviations for all codes. As l... Andreas Müller
10:27 AM bug #9618 (Closed): fix historic NomenclaturalCodeEdition names ICN -> ICBN: Solution accepted. Ticket can be closed. Andreas Kohlbecker
02:55 PM bug #9621 (New): New Preference for Default of the SecundumForSubtreeConfigurator: see #9611 Katja Luther
02:51 PM feature request #5573: Cache Strategy for Media Specimen required: Katja Luther wrote:
> Shouldn't the motif be part of the titlecache if no other field is filled?
> At the moment th... Andreas Müller
02:20 PM feature request #5573 (Feedback): Cache Strategy for Media Specimen required: Shouldn't the motif be part of the titlecache if no other field is filled?
At the moment the titleCache is the UUID ... Katja Luther
02:30 PM bug #9620 (New): Add a preference which defines whether a new uuid is wanted for swap synoym and accepted: from #9590:
As the 2 methods are now distinguished only by a boolean parameter we should add a ticket to define by... Katja Luther
10:55 AM bug #9390: Remaining issues for set secundum dialog: The line break is probably not so critical so I don't think we urgently need a self made dialogue. But I don't know h... Andreas Müller
10:25 AM bug #9612 (Closed): ROLE_USER_MANAGER is missing as a group in FirstDataImporter: Ja, die sollte weg, dass die hier keinen Sinn macht, meinte ich auch mit "seems like a copy of some other test."
... Andreas Kohlbecker
10:23 AM bug #9605 (Closed): Disable Details View for structure and property trees in character editor: This works as expected now Andreas Müller
10:08 AM bug #9601: Set secundum for subTree does not work for misapplied names: I adapted default value for MAN and ppSyn. For discussion see #9611#note-13 Andreas Müller
09:57 AM bug #9601: Set secundum for subTree does not work for misapplied names: Having 3 parameters for overwriteExistingXXX makes the UI complex and has not much added value. See discussion at #96... Andreas Müller

05/11/2021

11:21 PM bug #9587 (Feedback): Unsaved changes are lost when trying to open a taxon a second time: This does not seem to work if a taxon is used multiple times. E.g. if you search for "Sectest cdcfd" in rem_conf_am a... Andreas Müller
11:11 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Also I guess by default we should switch off "apply to MAN err. sec." and "apply to ppsyn syn. sec." as most projects... Andreas Müller
11:07 PM feature request #9611 (Feedback): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Similar to the setPublishForSubtree dialog we should separate those parameters that do hold for all taxon types a bit... Andreas Müller
10:38 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: As the 2 methods are now distinguished only by a boolean parameter we should add a ticket to define by preferences if... Andreas Müller
10:36 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: To me it looks like the code commented with "//Move descriptions to new taxon" is fully redundant in both methods. If... Andreas Müller
10:33 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: Also there is a looot of commented code still in the methods. Also some warning.
Can you please remove those parts o... Andreas Müller
10:27 PM bug #9590 (Feedback): ObjectDeletedException when swap synonym and accepted taxon: I do not understand why we need the lines
~~~
acceptedTaxon.setTitleCache(null, true);
acceptedTaxon.g... Andreas Müller
10:24 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: Instead of having a new methode I added a new parameter (boolean newUuidForAcceptedTaxon) to the method and unified t... Andreas Müller
10:23 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon: The original problem (re-save) is fixed with d4149686.
Andreas Müller
06:57 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: >What if this information is to be shown the Data Portal, would you just write "Cambridge 1935" without stating which... Andreas Müller
06:03 PM bug #9618 (Resolved): fix historic NomenclaturalCodeEdition names ICN -> ICBN: You mean the "Suggestion" above?
I do not understand why this needs to be a method for NomenclaturalCode.
Why n... Andreas Müller
04:46 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: The Taxeditor is not the only UI we have. There is the UI where I took the screenshot from, therefore I don't quite u... Andreas Kohlbecker
04:35 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: But I do not understand what we need the abbreviation for. It is really an important information to show the abbrevia... Andreas Müller
04:30 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: I was not in cc of this ticket anymore therefore I missed the discussion. Andreas Müller
03:09 PM bug #9618 (Feedback): fix historic NomenclaturalCodeEdition names ICN -> ICBN: Andreas Müller wrote:
> NomenclaturalCodeEdition entry names are pure enum "names" not used for anything else. So we... Andreas Kohlbecker
06:45 PM bug #9612: ROLE_USER_MANAGER is missing as a group in FirstDataImporter: But I also do not understand what the testInsertData() test method is for. It does not seem to be related to first da... Andreas Müller
06:42 PM bug #9612 (Resolved): ROLE_USER_MANAGER is missing as a group in FirstDataImporter: The addMissingAuthority method is a private method that is explicitly tested in testBlankDB by the result dataset "Fi... Andreas Müller
05:57 PM bug #9612: ROLE_USER_MANAGER is missing as a group in FirstDataImporter: Andreas Kohlbecker wrote:
> implementation ok, the `FirstDataInserterTest` however looks like it has never been impl... Andreas Kohlbecker
05:39 PM bug #9612 (In Progress): ROLE_USER_MANAGER is missing as a group in FirstDataImporter: implementation ok, the `FirstDataInserterTest` however looks like it has never been implemented, seems like a copy of... Andreas Kohlbecker
06:43 PM feature request #9613 (Closed): Use fixed uuids for roles project manager, publish and user manager: Andreas Müller
05:57 PM feature request #9613: Use fixed uuids for roles project manager, publish and user manager: can be closed in principle, but see #9612 first. Andreas Kohlbecker
06:26 PM task #9300: Name Page: harmonize media specimen lectotype representations: Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > so should we change status to "in progress" as questions are ... Andreas Müller
05:47 PM bug #9185 (Closed): DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404 HTTP response: no longer such NPEs in the logs Andreas Kohlbecker
05:40 PM bug #9606 (Closed): NullPointerExceptions (NPEs) in OccurrenceServiceImpl: yes Andreas Kohlbecker
05:30 PM feature request #9619 (Closed): Model changes for taxon concept strategy: Tested on test server. The new columns appear as expected. Andreas Müller
03:29 PM feature request #9619 (Resolved): Model changes for taxon concept strategy: Andreas Müller
05:28 PM task #9536 (Closed): Remove old single source citation and microCitation columns for secundum and DescriptionElementBase_OriginalSourceBase and TaxonName_NomenclaturalStatus: Tested on test server, works as expected after server ran update script Andreas Müller
05:22 PM feature request #9575 (Closed): Allow flag to include authors in taxon and name search in TaxEditor: works as expected now Andreas Müller
05:19 PM task #9614 (Closed): Use underscore as word separator for all role based groups: looks good Andreas Kohlbecker
05:13 PM feature request #9597 (Resolved): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting: Andreas Kohlbecker wrote:
> please can you clarify what the expected new output is?
>
> I am assuming this repres... Andreas Müller
04:24 PM feature request #9597 (Feedback): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting: please can you clarify what the expected new output is?
I am assuming this representation in the new one ".... Ger... Andreas Kohlbecker
04:43 PM task #9617: Rename ICNB to ICNP: Andreas Kohlbecker wrote:
> please consider the discussion in #9618 before closing this ticket, as the question ther... Andreas Müller
03:43 PM task #9617: Rename ICNB to ICNP: please consider the discussion in #9618 before closing this ticket, as the question there is highly related. Andreas Kohlbecker
03:40 PM task #9617 (Closed): Rename ICNB to ICNP: I tink this can be closed. ICNB/P is not yet really used anyway. Andreas Müller
12:33 PM task #9617 (Resolved): Rename ICNB to ICNP: Applied in changeset commit:cdmlib|a918965a9529a628c997456fd5810338a2f7443f. Andreas Müller
04:34 PM bug #9366 (Closed): Specimen type designation with specimen having only collection name but not collection code does not show collection information: implementation looks correct, can be closed Andreas Kohlbecker
12:05 PM bug #6359 (Resolved): Remaining issues secundum for subtrees: Andreas Müller
10:59 AM bug #9615 (New): Options for schema creation in empty data bases.: Thank you for this hint. The cdmlib-remote will create the schema creation when the parameter `cdm.forceSchemaCreate`... Andreas Kohlbecker
10:22 AM feature request #8708 (Duplicate): Sort taxa in distribution editor same as in navigator: this is a duplicate for #9416 and #9354, so I close this ticket as duplicate. Katja Luther
09:31 AM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor: Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > This to me seems to be fixed. Katja ... Katja Luther
09:03 AM bug #9469 (Closed): Searching for a UUID in bulkeditor which does not belong to a record throws an exception: Tested it in TeamOrPerson Bulkeditor and Namebulkeditor and got no exception, seems to be fixed. Katja Luther
08:58 AM bug #9605 (Resolved): Disable Details View for structure and property trees in character editor: Andreas Müller wrote:
> Generally this works. However, there is a special situation which shows a strange behavior:
... Katja Luther

05/10/2021

05:17 PM task #9617: Rename ICNB to ICNP: Andreas Kohlbecker wrote:
> NOTE: this change in `NomenclaturalCodeEdition` should not affect the `name` of historic... Andreas Müller
04:28 PM task #9617: Rename ICNB to ICNP: NOTE: this change in `NomenclaturalCodeEdition` should not affect the `name` of historic code editions which where or... Andreas Kohlbecker
03:11 PM task #9617 (Closed): Rename ICNB to ICNP: Since certain time the code is better called ICNP. See https://en.wikipedia.org/wiki/International_Code_of_Nomenclatu... Andreas Müller
05:16 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN: NomenclaturalCodeEdition entry names are pure enum "names" not used for anything else. So we can rename them but ther... Andreas Müller
04:35 PM bug #9618 (Closed): fix historic NomenclaturalCodeEdition names ICN -> ICBN: As of 2012 the IAPT has renamed the code editions to ICN, older code editions like the Vienna code and former release... Andreas Kohlbecker
05:06 PM feature request #9619 (Closed): Model changes for taxon concept strategy: In the taxonId meeting 2021-03-21 we agreed on the following changes
Class: Taxon
Attribute: conceptId
Type:... Andreas Müller
09:08 AM feature request #9616 (New): Reference for condensed distribution string: mail WB:
Eine (auch jetzt) offene Frage ist, wie man mit Referenzen innerhalb des Strings oder für den gesamten Fa... Katja Luther

05/08/2021

01:35 AM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails: we have discussed this Andreas Müller
01:32 AM feature request #6718 (Duplicate): Constistent TypeDesignation representation creation: Close this ticket as it is only a master (subtickets are tagged by "type designation") Andreas Müller
01:19 AM bug #9588: Specimen Tree View: Duplicate derivatives: The example data look ok, but not fully similar to the reported data structure from production. Therefore I suggest t... Andreas Müller
01:12 AM bug #9609: Use DerivedUnit or FieldUnit for DetailsView of tree editor: Generally this is not so urgent but should be done at some time. Andreas Müller
01:11 AM bug #9615 (Feedback): Options for schema creation in empty data bases.: The required functionality exists in the taxeditor:
![](picture914-1.png)
therefore I suggest to close this tic... Andreas Müller

05/07/2021

08:34 PM bug #9615 (New): Options for schema creation in empty data bases.: stack trace from cdmlib-remote-webapp startup:
~~~~
Caused by: org.springframework.beans.BeanInstantiationExcept... Andreas Kohlbecker
01:56 PM bug #6359 (In Progress): Remaining issues secundum for subtrees: Andreas Müller
01:47 PM task #9614: Use underscore as word separator for all role based groups: This is fixed and can be reviewed (except for the schema update which will is not yet enabled) Andreas Müller
01:46 PM task #9614 (Resolved): Use underscore as word separator for all role based groups: Applied in changeset commit:cdmlib|19400ec9f00bbda8b8539082ffb469999ed03977. Andreas Müller
01:35 PM task #9614 (Closed): Use underscore as word separator for all role based groups: such as Project_Manager, Editor_Reference and Editor_Extended_Create.
Currently they use also camel case and hyphen. Andreas Müller
01:27 PM bug #9051: Role Project manager should not have right to edit users and creating a new user with missing rights results in two message-boxes: I changed the title of the ticket as the incorrect evaluation of the rights for role_project_manager is the more crit... Andreas Müller
09:53 AM bug #9051 (New): Role Project manager should not have right to edit users and creating a new user with missing rights results in two message-boxes: Katja Luther wrote:
> How are you able to create a user without permission, the admin menu is available only if you ... Andreas Müller
08:37 AM bug #9051 (Feedback): Role Project manager should not have right to edit users and creating a new user with missing rights results in two message-boxes: How are you able to create a user without permission, the admin menu is available only if you are admin or project ma... Katja Luther
01:24 PM bug #9612: ROLE_USER_MANAGER is missing as a group in FirstDataImporter: This is fixed and can be reviewed. Andreas Müller
12:41 PM bug #9612 (Resolved): ROLE_USER_MANAGER is missing as a group in FirstDataImporter: Applied in changeset commit:cdmlib|ee97649b15bfeb922508e97eec12aaecbd04535e. Andreas Müller
10:13 AM bug #9612 (In Progress): ROLE_USER_MANAGER is missing as a group in FirstDataImporter: Andreas Müller
09:52 AM bug #9612 (Closed): ROLE_USER_MANAGER is missing as a group in FirstDataImporter: ... for details see #9051
Or is it not wanted to have a group for this as default similar to Group_Project_Manager? Andreas Müller
01:24 PM feature request #9613: Use fixed uuids for roles project manager, publish and user manager: this is fixed and can be reviewed. Only open issue is that the schema update to 5.23 is not yet activated so old data... Andreas Müller
01:22 PM feature request #9613 (Resolved): Use fixed uuids for roles project manager, publish and user manager: Applied in changeset commit:cdmlib|961bbcd9b37c84a728d020c601843c769ff1de52. Andreas Müller
12:21 PM feature request #9613 (Closed): Use fixed uuids for roles project manager, publish and user manager: Currently only Role_Admin and Role_Remoting seem to have fixed UUIDs though in class persistence.permission.Role UUID... Andreas Müller
12:17 PM bug #9609: Use DerivedUnit or FieldUnit for DetailsView of tree editor: as we want to release next week I move this ticket to the next milestone Katja Luther
12:16 PM task #9595 (Closed): Use DerivedUnit or DnaSample for DnaSampleGeneralDetailElement: this works as expected. Katja Luther
12:09 PM task #9594 (Closed): Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement: Implemented the interface and reviewed the mediaspecimen details view. This worked as expected, so we can close this ... Katja Luther
11:42 AM feature request #8922 (Duplicate): Make setting of sec-Reference configurable when moving synonyms.: this is a duplicate for #9340. Katja Luther
11:40 AM feature request #9575 (Resolved): Allow flag to include authors in taxon and name search in TaxEditor: this should be fixed now. Katja Luther
10:17 AM feature request #9611 (Resolved): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: Please review. Katja Luther
10:16 AM bug #9601 (Closed): Set secundum for subTree does not work for misapplied names: tested it with the new implementation in editor and it works as expected. Katja Luther
09:44 AM bug #8521 (Feedback): User details view: Change password button accessible for ROLE_USER_MANAGER: This to me seems to be a duplicate for #8925. If this is true, please close the ticket as duplicate and remove target... Andreas Müller
08:59 AM bug #9587 (Resolved): Unsaved changes are lost when trying to open a taxon a second time: Andreas Müller wrote:
> the cancel works now.
>
> However, this is still unclear: "Diese Operation wird den Edito... Katja Luther

05/06/2021

09:51 PM bug #9588: Specimen Tree View: Duplicate derivatives: Test data: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/d245083e-3bda-435f-9bb3-bdc... Andreas Kohlbecker
07:03 PM bug #9588: Specimen Tree View: Duplicate derivatives: I will do the review after the release as I have no test data on test Andreas Müller
08:45 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: This is a blocker as the current behavior by default sets the error sec and the syn sec which might be unexpected for... Andreas Müller
06:54 PM feature request #9611 (Closed): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor: this is a follow up from #9601
Parameters are similar to setPublishForSubtree.
The labels should make clear tha... Andreas Müller
07:51 PM bug #9598 (Closed): Deduplicate NamedAreas with >1 representations and include label in search: I works.
I changed the code the way that it calls the existing method to avoid redundant code.
As this does not... Andreas Müller
07:40 PM bug #9587 (Feedback): Unsaved changes are lost when trying to open a taxon a second time: Andreas Müller
07:40 PM bug #9587: Unsaved changes are lost when trying to open a taxon a second time: the cancel works now.
However, this is still unclear: "Diese Operation wird den Editor speichern. Ebenso werden al... Andreas Müller
07:16 PM bug #9605 (Feedback): Disable Details View for structure and property trees in character editor: Generally this works. However, there is a special situation which shows a strange behavior:
* open character edito... Andreas Müller
07:11 PM feature request #9575: Allow flag to include authors in taxon and name search in TaxEditor: The problem seems to be flag direction. With the flag NOT set, it works, with the flag set, it does not work. But it ... Andreas Müller
07:06 PM feature request #9575 (Feedback): Allow flag to include authors in taxon and name search in TaxEditor: This does not work correctly yet. I searched for "Arenario Ad*" on rem_conf_am with no result. While search for "Aren... Andreas Müller
07:02 PM bug #9603 (Closed): Sorting in status drop down of distribution editor: Works as expected and also methods that depend on the change were adapted. Andreas Müller
06:55 PM bug #9601: Set secundum for subTree does not work for misapplied names: please review Andreas Müller
06:52 PM bug #9601 (Resolved): Set secundum for subTree does not work for misapplied names: Applied in changeset commit:cdmlib|3b85f95996257c66bec3f57c82deac14356df375. Andreas Müller
03:35 PM bug #8659 (Closed): Taxon navigator: not refreshed after ABCD file import: this is fixed now. Katja Luther
03:23 PM bug #9610 (In Progress): MediaMetadataFileReader (formerly in CdmImageInfo) loads same image file multiple times: For one and the same image file the UriUtils methos `getInputStream()` and `getResourceLength()` are being used multi... Andreas Kohlbecker
02:55 PM task #9607 (In Progress): read image metadata from MediaInfoService if available: Andreas Kohlbecker
08:59 AM bug #9609 (New): Use DerivedUnit or FieldUnit for DetailsView of tree editor: same reason as for #9594
Implement new details view elements for tree editor and use derived unit and field unit o... Katja Luther

05/05/2021

06:06 PM bug #9608 (New): UriUtils to use HTTP HEAD requests where possible: where UriUtils need to use HTTP HEAD requests :
* getResourceLength()
* more ?
This can be performance criti... Andreas Kohlbecker
05:52 PM task #9607 (Closed): read image metadata from MediaInfoService if available: The BGBM digilib image server is now complemented by an instance of the [MediaInfoService](https://github.com/cyberta... Andreas Kohlbecker
11:29 AM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement: Andreas Müller wrote:
> in DetailsViewE4.setInput() there is the following code:
>
> ~~~
> if (input instanceof... Katja Luther
10:57 AM bug #9603 (Resolved): Sorting in status drop down of distribution editor: please review. Katja Luther
10:40 AM feature request #6718 (Feedback): Constistent TypeDesignation representation creation: there two additional ticket one in cdmlib and one in cdmlib-remote (https://dev.e-taxonomy.eu/redmine/projects/edit/i... Andreas Kohlbecker
09:53 AM bug #9605: Disable Details View for structure and property trees in character editor: please review Katja Luther
09:52 AM bug #9605 (Resolved): Disable Details View for structure and property trees in character editor: Applied in changeset commit:taxeditor|8cec01d85742928dc10fb695d2f778f627c8414a. Katja Luther

04/30/2021

10:55 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor: Andreas Müller wrote:
> Andreas Müller wrote:
> > This to me seems to be fixed. Katja can you check, and if true ad... Andreas Müller
10:53 PM bug #9302: Phycobank related issues for TypeDesignation formatting: Check how far this is still open.
Closed issues where implemented in 5.18 or prior. Andreas Müller
10:49 PM bug #9398: ObjectNotFoundException when removing a synonym that is used as NameInSource: This still seems to be an open issue I guess? And it should have high priority as ObjectNotFoundException should be a... Andreas Müller
10:37 PM feature request #5575 (Feedback): DNA Sample requires CacheStrategy: The initialization of the cache strategy does not seem to fully work yet. See comment in #9595#note-2 Andreas Müller
10:26 PM feature request #5573: Cache Strategy for Media Specimen required: I think this is fully implemented now. If users want it differently they may tell us by time and we can adapt the cod... Andreas Müller
08:27 PM feature request #5573: Cache Strategy for Media Specimen required: >An iconotyp may have completely different requirements than a scan that is derived from a preserved specimen.
Med... Andreas Müller
10:01 PM feature request #7612 (Duplicate): CacheStrategy for MediaSpecimens: This focus of this ticket is not fully clear. Is it only about MediaSpecimen or about MediaSpecimen used as types.
... Andreas Müller
09:49 PM task #9595 (Resolved): Use DerivedUnit or DnaSample for DnaSampleGeneralDetailElement: This is implemented. However it does not work similar to MediaSpecimen as DnaSample somehow always gets the DerivedUn... Andreas Müller
07:06 AM task #9595 (Closed): Use DerivedUnit or DnaSample for DnaSampleGeneralDetailElement: same reason as for #9594
This is also a step forward to not use DerivedUnitFacade in SpecimenTreeEditor details vi... Andreas Müller
09:23 PM feature request #9597: Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting: I adapted the formatting of MediaSpecimen type designations sources to the general source handling. This also allows ... Andreas Müller
09:14 PM feature request #9597 (Resolved): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting: Applied in changeset commit:cdmlib|11e24052308c971ec1959f5e8219ff1962a61a7c. Andreas Müller
08:04 PM feature request #9597 (Closed): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting: copied from #9279
Sources for MediaSpecimen should be formatted in the same way as elsewhere
Example:
* Old no... Andreas Müller
08:24 PM feature request #6718: Constistent TypeDesignation representation creation: As we do have TypeDesignationSetManager in cdmlib now and all open tickets are dataportal related I guess we could ei... Andreas Müller
08:21 PM feature request #5950 (Duplicate): Add duplicate method for type designations: I guess this duplicates #6413 Andreas Müller
08:05 PM feature request #9279 (Closed): Improve type designation formatting and TypeDesignationSetManager: move open issues to new tickets #9596 and #9597 and close this ticket. Andreas Müller
08:01 PM feature request #9596 (In Progress): Open issues for TypeDesignationWorkingSet: copied from #9279
Urgent:
* Improve tagged text for TypeDesignationWorkingSet
* allow adding links for ... Andreas Müller

04/29/2021

09:57 PM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement: in DetailsViewE4.setInput() there is the following code:
~~~
if (input instanceof MediaSpecimen && !(this.active... Andreas Müller
04:34 PM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement: Note: the implementation in specimen list editor leads to a message that the specimen can not be edited in details vi... Andreas Müller
04:26 PM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement: we could do something similar for DnaSample Andreas Müller
04:25 PM task #9594 (Resolved): Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement: please review Andreas Müller
04:19 PM task #9594 (Closed): Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement: It does not make sense to use DerivedUnitFacade here as the specific type is known. Also it the facade creates proble... Andreas Müller
09:48 PM feature request #4363 (Closed): Show more informative message for unsupported specimen structures in specimen bulk editor: The exception handling seems to be correct now and this ticket can be closed. Andreas Müller
03:56 PM feature request #4363: Show more informative message for unsupported specimen structures in specimen bulk editor: See also comment in DetailsViewerE4.showParts where a DerivedUnitFacade is created only to get the error message. Andreas Müller
05:04 PM bug #5581 (Closed): Specimen title cache does not show up correctly after editing: For MediaSpecimen and DnaSample a cache strategy exists now. So I close this ticket. Andreas Müller
04:29 PM feature request #5573: Cache Strategy for Media Specimen required: A first version is implemented now. This cache strategy differs from default derived unit cache strategies in the way... Andreas Müller
04:22 PM feature request #5573: Cache Strategy for Media Specimen required: To use the new cache strategy the editor needs to be refactored a bit: #9594 Andreas Müller
03:42 PM feature request #9575 (Resolved): Allow flag to include authors in taxon and name search in TaxEditor: this is fixed, please review. Katja Luther
03:32 PM bug #9593 (Closed): Changing and saving a PolytomousKey throws ConcurrentModificationException: Andreas Müller wrote:
> Probably this is ok, though I wonder why the root node is not doing the same job as it is me... Katja Luther
01:12 PM bug #9593 (Feedback): Changing and saving a PolytomousKey throws ConcurrentModificationException: Probably this is ok, though I wonder why the root node is not doing the same job as it is merge-cascaded. But as the ... Andreas Müller
02:31 PM bug #5885 (Worksforme): classification.rootNode has a lot of NULL children: Andreas Müller wrote:
> Katja, can you please have a look if this is still an open issue and if yes if it is related... Katja Luther
01:17 PM bug #5885: classification.rootNode has a lot of NULL children: Katja, can you please have a look if this is still an open issue and if yes if it is related to the known hibernate N... Andreas Müller
12:51 PM task #6981: Migrate to Java 11: we should consider migrating to Java 11 directly, maybe to java 17?
Java 11 is the latest LTS release with Premier... Andreas Kohlbecker
12:24 PM feature request #9329 (Closed): Implement sec reference as original source in dataportal: Andreas Kohlbecker
11:50 AM feature request #9329 (In Progress): Implement sec reference as original source in dataportal: Andreas Kohlbecker

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