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From 04/18/2021 to 05/17/2021

05/17/2021

07:15 PM Revision 0c85f8e9 (cdmlib): ref #1924 use colon as after author and year operator
Andreas Müller
06:05 PM bug #8521 (Duplicate): User details view: Change password button accessible for ROLE_USER_MANAGER
this is handled with #8925 Katja Luther
06:04 PM Revision 79ec1575 (cdmlib): cleanup
Andreas Müller
06:04 PM Revision e9129942 (cdmlib): ref #9624 use short citation without brackets in cdmlight reference ...
Andreas Müller
06:04 PM Revision 036a4353 (cdmlib): ref #9624, ref #7305, ref #9326 change max number of nomencl. authors...
Andreas Müller
06:03 PM Revision 05bfd934 (taxeditor): add user_manager to core expression of admin menu
Katja Luther
05:27 PM Revision 589e12fd (cdmlib): adapt cache updater for new progress monitor handling - adapt updateC...
Katja Luther
05:21 PM Revision 8cf3e01e (cdmlib): adapt cache updater for new progress monitor handling - continue
Katja Luther
05:17 PM Revision dcce51e5 (cdmlib): adapt cache updater for new progress monitor handling - continue
Katja Luther
05:14 PM Revision 0f88765e (cdmlib): adapt cache updater for new progress monitor handling - continue
Katja Luther
05:14 PM Revision 1edd8f23 (cdmlib): adapt cache updater for new progress monitor handling
Katja Luther
04:46 PM Revision e74ca981 (cdmlib): minor
Andreas Müller
04:45 PM Revision ff02c87a (cdmlib): minor
Andreas Müller
04:44 PM Revision e806a768 (cdmlib): ref #9624 use short citation without brackets in cdmlight reference ...
Andreas Müller
04:09 PM Revision 1b643550 (taxeditor): ref #9622 , ref #6359 handle progress monitor without setting task...
Andreas Müller
03:29 PM bug #6359: Remaining issues secundum for subtrees
Katja Luther wrote:
> I tried to adapt the progress monitor handling like for the cache update and the output in edi...
Andreas Müller
03:26 PM bug #6359: Remaining issues secundum for subtrees
I tried to adapt the progress monitor handling like for the cache update and the output in editor looks like this:
...
Katja Luther
03:00 PM bug #6359: Remaining issues secundum for subtrees

I think the usage of submonitors needs to be adapted, I already did this for cache update, there the submonitor lab...
Katja Luther
03:27 PM Revision 0ea7bbfa (taxeditor): ref #9622 some error handling in progress monitoring
Andreas Müller
02:29 PM Revision 3231a5c3 (cdmlib): ref #9624 use default short citation for TaxonRelationshipFormatter (...
Andreas Müller
02:27 PM task #9624: Centralize team formatting and fix et al. position handling
AM: ... wird bei den err. sec. (und auch syn. sec. von pp-Synonymen) das „Kurzzitat“ noch mit >2 Autoren angezeigt. A... Andreas Müller
01:37 PM bug #9590 (Closed): ObjectDeletedException when swap synonym and accepted taxon
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also there is a looot of commented cod...
Katja Luther
01:35 PM Revision ab72e607 (cdmlib): ref #9590: remove unused variable
Katja Luther
01:35 PM bug #2969 (Closed): Correct formatting for bibliographic references
The cache strategies are split now (e.g. #9604). Examples for correct formatting bibliographic references are given i... Andreas Müller
01:24 PM feature request #9611 (Resolved): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Katja Luther wrote:
> > > > Andreas M...
Katja Luther
12:47 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > implement...
Andreas Müller
12:23 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > implemented. Please adapt UI.
> >
>...
Katja Luther
01:23 PM Revision 17cca815 (taxeditor): ref #9587: adapt editor handling for shared taxa - continue
Katja Luther
12:42 PM bug #9587 (Resolved): Unsaved changes are lost when trying to open a taxon a second time
Katja Luther
12:39 PM bug #9587: Unsaved changes are lost when trying to open a taxon a second time
Andreas Müller wrote:
> This does not seem to work if a taxon is used multiple times. E.g. if you search for "Sectes...
Katja Luther
12:40 PM Revision 60fa760b (taxeditor): ref #9587: adapt editor handling for shared taxa
Katja Luther
12:31 PM Revision 8e5f7864 (taxeditor): ref #9611: move use shared taxa to the general flags
Katja Luther
11:06 AM bug #9588: Specimen Tree View: Duplicate derivatives
Andreas Kohlbecker wrote:
> I don't understand why you are changing the category, this clearly was a bug in cdmlib-s...
Andreas Müller
10:54 AM bug #9588: Specimen Tree View: Duplicate derivatives
I don't understand why you are changing the category, this clearly was a bug in cdmlib-services Andreas Kohlbecker
11:00 AM task #9623 (Closed): Remove TaxonBaseShortSecCacheStrategy
ok Katja Luther
10:58 AM feature request #7305 (Closed): [Dicuss] searching for authorteam with more than three members is...
works as expected. Katja Luther
09:45 AM Revision b53660e6 (cdmlib): add appended phrase to scientific name, taxon and synonym tables
Katja Luther
09:31 AM bug #9625 (Closed): Selection for team members does not filter on persons only
Andreas Müller
09:31 AM bug #9625 (Closed): Selection for team members does not filter on persons only
Andreas Müller
09:22 AM bug #9529 (Closed): Correct formatting for bibliographic in-reference separation
WGB: ich bin auf jeden Fall für das Komma!
NoK: Bin ... Walters Meinung
Andreas Müller
09:06 AM Revision 85526f34 (cdmlib): fix getUuidAndTitleCache for persons/teams only
Katja Luther

05/16/2021

11:53 PM feature request #2854 (Closed): Implement part of other title for part of articles and part of bo...
The possible open issue is not relevant anymore as BM imports are mostly done. Also the issue is logged in case it is... Andreas Müller
11:44 PM bug #9373 (Feedback): In specimen details view used within specimen tree editor titleCache field ...
Andreas Müller

05/15/2021

02:35 AM feature request #9433 (Feedback): Improve titleCache generation for misapplications
> Wenn wir das auf sensu ändern wäre es auch schön, wenn man an dieser Stelle auch Autor und nom. Status weglassen wü... Andreas Müller
02:27 AM feature request #3667 (Closed): Implement correct implementation of original spelling in publicat...
Andreas Müller wrote:
> Still need to check/discuss if this is already the case in dataportal and print publication
...
Andreas Müller
02:25 AM feature request #3667: Implement correct implementation of original spelling in publications
Still need to check/discuss if this is already the case in dataportal and print publication Andreas Müller
02:19 AM bug #6960 (Duplicate): Improve reference cachestrategy
This duplicates #4338 Andreas Müller
02:18 AM bug #6960: Improve reference cachestrategy
> webpage without title duplicates the URI
can't reproduce this anymore, seems to be fixed in the meanwhile
Andreas Müller
02:05 AM feature request #3764: Improve formatting for reference type Section
Final tests should be written. See also #6499. ~~Then move back to 3.8 if no major changes needed.~~ There were a cou... Andreas Müller
02:00 AM bug #3872 (Worksforme): Title cache is null if the reference is a journal
I can't reproduce this anymore. Maybe it was fixed with the ReferenceDefaultCacheStrategy refactoring. Andreas Müller

05/14/2021

01:49 AM bug #4773 (Worksforme): Lampranthus throws IndexOutOfRange exception
The exception is not thrown anymore for such a combination and for the concrete taxon in caryo. Also the result looks... Andreas Müller
01:35 AM bug #1815 (Closed): setInReference needs to reset the title cache
This seems to be fixed. See also tests in ReferenceDefaultCacheStrategy Andreas Müller
01:34 AM Revision 461c07a9 (cdmlib): ref #1815 final tests on reset titleCache
Andreas Müller
01:27 AM task #1404 (Rejected): References cache strategy should always render bibliographic references
This is not relevant anymore. Current implementation works for users. Also there are 2 caches now for abbrev and full... Andreas Müller
12:31 AM Revision 275b7d80 (cdmlib): ref #9624 fix EMPTY_TEAM issue for non-titleCache formatting of teams
Andreas Müller
12:02 AM Revision b5a187e2 (cdmlib): ref #9530, ref #6499 add pages for book sections (cont. II)
Andreas Müller
11:58 PM Revision a67ed1e2 (cdmlib): reenable some test
Andreas Müller
11:58 PM Revision 00c59288 (cdmlib): ref #9530, ref #6499 add pages for book sections (cont.)
Andreas Müller
11:43 PM feature request #9530 (Closed): Add pages to bibliographic book sections
Andreas Müller
11:41 PM feature request #9530 (Resolved): Add pages to bibliographic book sections
Applied in changeset commit:cdmlib|957a9a67a088b3e9f30bf2ac712aeb107d36b6d6. Andreas Müller
11:41 PM Revision 957a9a67 (cdmlib): fix #9530, ref #6499 add pages for book sections
Andreas Müller
11:39 PM Revision 78fa4dec (cdmlib): ref #9529 replace afterSectionAuthor n-dash by comma
Andreas Müller
11:36 PM Revision 46062501 (cdmlib): ref #9604 adapt javadoc for ReferenceDefaultCacheStrategy
Andreas Müller
10:58 PM bug #9529: Correct formatting for bibliographic in-reference separation
und noch eine Frage zur Formatierung. In #9529 haben wir ja beschlossen, dass bibliographische In-Referenzen mit „. –... Andreas Müller
10:38 PM Revision 59fa7b84 (cdmlib): ref #9529 fix duplicated dashes and replaces minus by dashes in book ...
Andreas Müller
10:35 PM bug #5684 (Worksforme): NPE when trying to move a presence-absence term within the vocabulary
This works for me and can be closed. Andreas Müller
10:25 PM feature request #9326 (Resolved): Show all authors in bibliographic references
This should be fixed now. Maybe before review an (title)cache update is necessary. For single teams this can be done ... Andreas Müller
09:41 PM Revision cda77ee0 (cdmlib): revert deduplication for term DTOs (cont.)
Andreas Müller
09:33 PM bug #6749 (Closed): No media is created for new mediaSpecimen
This works as expected Andreas Müller
09:14 PM task #9624 (Resolved): Centralize team formatting and fix et al. position handling
This is generally fixed. Fine tuning is still required for correct et al. positions. Email was sent to users. Andreas Müller
07:43 PM task #9624 (Closed): Centralize team formatting and fix et al. position handling
Formatting of teams is done at many places in cdmlib (TeamDefaultCacheStrategy, NomenclaturalSourceFormatting, TaxonB... Andreas Müller
08:18 PM Revision 3edeea19 (taxeditor): cleanup
Andreas Müller
08:16 PM Revision e6f1e6f4 (taxeditor): remove colon after SetxxxForSubtree task names
Andreas Müller
08:15 PM Revision a80e388e (taxeditor): adapt ConceptContainerE4 to TaxonRelationshipFormatter factory method
Andreas Müller
08:07 PM feature request #7305 (Resolved): [Dicuss] searching for authorteam with more than three members ...
This should be fixed with #9624. Before reviewing you may need to run the cache updater. Andreas Müller
08:00 PM feature request #6662 (Closed): Adapt person formatting, set initials behind lastname
Andreas Müller
07:57 PM feature request #6504 (Closed): Bibliographic references should not start with firstname.
This should be fixed due to new cache strategy which puts initials after family name in biblo teams Andreas Müller
07:54 PM Revision 0c763d5f (cdmlib): ref #9624, ref #7305, ref #9326 refactor team formatting all over cdm...
Andreas Müller
04:15 PM feature request #9597 (Closed): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet ...
implementation and test case looks ok. As there are no test to be adapted in the dataportal, this ticket can be closed. Andreas Kohlbecker
01:56 PM Revision f15653d2 (cdmlib): ref #7305, ref #9326 allow different etAlPosition for titleCache and ...
Andreas Müller
01:21 PM task #9623: Remove TaxonBaseShortSecCacheStrategy
I think there is not much to review but just to let you know that I have done this. Andreas Müller
01:18 PM task #9623 (Resolved): Remove TaxonBaseShortSecCacheStrategy
Applied in changeset commit:cdmlib|e80d154bb2d5faf5c1219935eacc16132a22e82c. Andreas Müller
01:13 PM task #9623 (Closed): Remove TaxonBaseShortSecCacheStrategy
The cache strategy is not used anymore and TaxonBaseDefaultCacheStrategy now implements sec referencing the same way ... Andreas Müller
01:17 PM Revision 37cb3cf7 (cdmlib): cleanup
Andreas Müller
01:17 PM Revision b53c4d75 (cdmlib): factory method and singleton support for TaxonRelationshipFormatter
Andreas Müller
01:14 PM Revision e80d154b (cdmlib): fix #9623 remove TaxonBaseShortSecCacheStrategy and CacheUpdaterWithN...
Andreas Müller
12:48 PM feature request #9433 (Resolved): Improve titleCache generation for misapplications
Applied in changeset commit:cdmlib|40708c65957005aa8723235844e7b9c3418f4525. Andreas Müller
12:48 PM Revision 40708c65 (cdmlib): fix #9433 titleCache generation for misapplications only adapted (use...
Andreas Müller
12:24 PM Revision fff53afa (cdmlib): revert deduplication for term DTOs
Andreas Müller
12:19 PM Revision 40b8afc7 (cdmlib): cleanup
Andreas Müller
11:09 AM Revision c4dc8004 (cdmlib): remove doubful ? from protected taxon titleCaches
Andreas Müller
11:08 AM Revision 122a1b31 (cdmlib): cleanup
Andreas Müller
10:44 AM Revision 839fd95f (cdmlib): deduplicate all results in vocabulary dao
Andreas Müller
10:44 AM Revision 0e3fe1f6 (cdmlib): cleanup
Andreas Müller
10:29 AM Revision cdf681f0 (cdmlib): deduplicate all results in term dao
Andreas Müller
10:28 AM Revision 61ebc53c (cdmlib): cleanup
Andreas Müller

05/13/2021

01:14 AM feature request #3666 (Closed): Implement original spelling in name parser
Andreas Müller
12:31 AM feature request #3666 (Resolved): Implement original spelling in name parser
Andreas Müller
12:16 AM Revision a04d9d22 (cdmlib): ref #3666 original spelling deduplication
Andreas Müller
07:48 PM Revision 8c7aea47 (cdmlib): ref #3666 original spelling parser for names without reference
Andreas Müller
07:48 PM Revision 65d376ee (cdmlib): cleanup
Andreas Müller
06:48 PM Revision a3092afb (cdmlib): cleanup
Andreas Müller
06:48 PM Revision 58b3c0f6 (cdmlib): ref #3666 first implementation of original spelling parser (cont.)
Andreas Müller
06:47 PM Revision bb78f32e (cdmlib): ref #3666 first implementation of original spelling parser
Andreas Müller
02:04 PM feature request #9270 (Feedback): show original spelling on taxon page
should we close this as duplicate (for #7781)? Andreas Müller
02:01 PM feature request #9270: show original spelling on taxon page
>Ich erinnere mich jetzt nicht daran warum das nach dem Namen kommt, das war aber sicherlich eine Anfrage/Anforderung... Andreas Müller
01:50 PM bug #7781: original spelling is missing for accepted taxon in taxon page
Also check if orginal name part is in italics as #3667 is now implemented Andreas Müller
01:48 PM Revision 88c7ae13 (cdmlib): ref #3665 test for original spelling for differing species epi and su...
Andreas Müller
01:47 PM Revision 035bc68b (cdmlib): tests not failing without aspectj
Andreas Müller
01:45 PM feature request #3667 (Resolved): Implement correct implementation of original spelling in public...
Applied in changeset commit:cdmlib|9f804efe2c1ddc0baaa3b1491d222e45acd84dd2. Andreas Müller
01:45 PM Revision 9f804efe (cdmlib): fix #3667 implement tagged text for original spellings
Andreas Müller
12:24 PM task #9604 (Closed): Split bibliographic reference cache strategy and nomenclatural formatter + o...
Andreas Müller
12:22 PM feature request #3665 (Closed): Further implementation of original spelling name caching
I think this can be closed. No obvious feature from the ticket description/discussion seems to be missing. Italics fo... Andreas Müller
12:16 PM Revision 65cf40d2 (cdmlib): ref #3667 some more tests for original spelling formatting
Andreas Müller
11:41 AM Revision 1d40411d (cdmlib): ref #9604 split to OriginalSourceFormatter (cont.)
Andreas Müller
11:38 AM feature request #9622 (In Progress): Improve remoting progress monitor handling
Andreas Müller
09:28 AM feature request #9622 (In Progress): Improve remoting progress monitor handling
Open issues:
KL:
bei der Aggregation scheint es noch nicht richtig implementiert zu sein, im Progress View zeig...
Andreas Müller
11:16 AM Revision 440c1195 (cdmlib): ref #9604 split to OriginalSourceFormatter
Andreas Müller
11:14 AM Revision b182d576 (cdmlib): cleanup
Andreas Müller
09:29 AM Revision d1a73b19 (cdmlib): ref #9622 allow releasing progress monitors
Andreas Müller
09:27 AM Revision 2b39b9df (cdmlib): cleanup
Andreas Müller

05/12/2021

01:26 AM Revision c9ccb1e7 (cdmlib): ref #6359 improve progress monitoring for setSecundumForSubtree
Andreas Müller
01:09 AM Revision 6537ad7c (cdmlib): cleanup
Andreas Müller
01:08 AM Revision ea3bd701 (cdmlib): ref #6359 fix NPE when removing sec
Andreas Müller
10:27 PM Revision f35fc088 (taxeditor): cleanup
Andreas Müller
07:22 PM Revision 540b5fba (cdmlib): cleanup
Andreas Müller
07:22 PM Revision e436a9ce (cdmlib): ref #8297 improve out of scope handling for alphabetically ordered co...
Andreas Müller
05:46 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
I think we should reenable the "delete" menu item as it should always be possible to remove computed data again. Mayb... Andreas Müller
05:42 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
The "Types" field for ordinary descriptions is now enabled but shouldn't because it is read only (should be set only ... Andreas Müller
05:39 PM feature request #8471 (Feedback): Computed descriptions should be disabled in TaxEditor
The description itself is not yet disabled in details view (but it is in suppl data view). This needs to be fixed. Andreas Müller
05:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
The preferences to make the aggregated data either disabled, invisible or enabled is still missing, correct?
Shoul...
Andreas Müller
08:46 AM feature request #8471 (Resolved): Computed descriptions should be disabled in TaxEditor
Missed to check in the label provider, please review now. There is still a missing issue, the details of the descript... Katja Luther
08:30 AM feature request #8471 (In Progress): Computed descriptions should be disabled in TaxEditor
Katja Luther
08:22 AM feature request #8471 (Resolved): Computed descriptions should be disabled in TaxEditor
please review. Katja Luther
05:15 PM bug #9589 (Closed): Move synonym to another accepted taxon ignores the selected new sec reference
works as expected Andreas Müller
05:13 PM Revision f0a11642 (cdmlib): cleanup
Andreas Müller
05:01 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
Katja Luther wrote:
> Andreas Müller wrote:
> > Also there is a looot of commented code still in the methods. Also ...
Andreas Müller
05:00 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
Katja Luther wrote:
> Andreas Müller wrote:
> > To me it looks like the code commented with "//Move descriptions to...
Andreas Müller
02:52 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
I think this ticket can be closed? Katja Luther
02:51 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
Andreas Müller wrote:
> Also there is a looot of commented code still in the methods. Also some warning.
> Can you ...
Katja Luther
02:31 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
Andreas Müller wrote:
> As the 2 methods are now distinguished only by a boolean parameter we should add a ticket to...
Katja Luther
02:27 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
Andreas Müller wrote:
> To me it looks like the code commented with "//Move descriptions to new taxon" is fully redu...
Katja Luther
05:00 PM Revision 09d803a3 (cdmlib): ref #9590 remove redundant nameUsedInSource handling code
Andreas Müller
04:46 PM Revision d1f6619f (cdmlib): cleanup
Andreas Müller
04:29 PM Revision f5563b1b (cdmlib): cleanup
Andreas Müller
04:25 PM bug #6359: Remaining issues secundum for subtrees
Katja Luther wrote:
> * make cancelable -> maybe we should show how many items already changed, especially because t...
Andreas Müller
04:21 PM bug #6359: Remaining issues secundum for subtrees
Katja Luther wrote:
> review:
>
> * add progress monitor -> the submonitors not shown in the status of the editor...
Andreas Müller
03:56 PM bug #6359 (Feedback): Remaining issues secundum for subtrees
review:
* add progress monitor -> the submonitors not shown in the status of the editor -> maybe a new ticket?
* ...
Katja Luther
03:01 PM bug #6359: Remaining issues secundum for subtrees
Katja, kannst du das Ticket grundsätzlich schon mal reviewen? Wir müssen noch eine Lösung finden für die Auswertung d... Andreas Müller
04:09 PM feature request #9611 (Feedback): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > implemented. Please adapt UI.
>
> The UI is adapted.
Can we h...
Andreas Müller
02:56 PM feature request #9611 (Resolved): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> ... and the preference if this is fast. Otherwise open new ticket as it is not really urgent...
Katja Luther
12:10 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> implemented. Please adapt UI.
The UI is adapted.
Katja Luther
10:20 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
... and the preference if this is fast. Otherwise open new ticket as it is not really urgent. Andreas Müller
10:07 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
implemented. Please adapt UI. Andreas Müller
10:03 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> >
> > > A bit problematic ist hte "Overw...
Katja Luther
09:55 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
>
> > A bit problematic ist hte "Overwrite existing sec refs for sele...
Andreas Müller
09:47 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also I guess by default we should swit...
Katja Luther
09:44 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > Also I guess by default we should switch off "apply to MAN err. sec...
Andreas Müller
09:26 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> Also I guess by default we should switch off "apply to MAN err. sec." and "apply to ppsyn sy...
Katja Luther
09:22 AM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Andreas Müller wrote:
> A bit problematic ist hte "Overwrite existing sec refs for selected relations option which...
Katja Luther
04:08 PM Revision 6fe5b1d5 (cdmlib): add comment to random uuid for condensed distribution
Katja Luther
03:16 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
Andreas Müller wrote:
> Die Liste enthält leider keine Abkürzungen, um die es aber gerade ging.
Aus einem Chat m...
Andreas Kohlbecker
12:26 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
Rein inhaltlich. Mindestens für das Projekt PhycoBank benötigen wir den Link zum Vollzitat. Ich gehe davon aus, das d... Wolf-Henning Kusber
12:23 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
Zudem die Frage, wie mit den Langformen umzugehen ist. Bislang hatten wir uns darauf geeinigt, lediglich DOIs oder UR... Andreas Müller
12:19 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
Die Liste enthält leider keine Abkürzungen, um die es aber gerade ging. Letztlich kann ich nur raten. War der "Vienna... Andreas Müller
12:11 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
Isn't this a good start? We can add more lists on demand. Andreas Kohlbecker
11:40 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
Andreas Kohlbecker wrote:
> diese Liste dürfte vollständig sein https://www.iapt-taxon.org/historic/list-of-Codes.ht...
Andreas Müller
11:33 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
diese Liste dürfte vollständig sein https://www.iapt-taxon.org/historic/list-of-Codes.htm
Andreas Kohlbecker
11:27 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
Yes, will do two lissts, (i) a short citation, and (ii) correct citations with help of the literature in our library. Wolf-Henning Kusber
11:04 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
here is one kind of list https://www.iapt-taxon.org/historic/index.htm Andreas Kohlbecker
10:48 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
Andreas Müller wrote:
> But as I mentioned above I need a full list of all correct abbreviations for all codes. As l...
Andreas Müller
10:27 AM bug #9618 (Closed): fix historic NomenclaturalCodeEdition names ICN -> ICBN
Solution accepted. Ticket can be closed. Andreas Kohlbecker
02:55 PM bug #9621 (New): New Preference for Default of the SecundumForSubtreeConfigurator
see #9611 Katja Luther
02:51 PM feature request #5573: Cache Strategy for Media Specimen required
Katja Luther wrote:
> Shouldn't the motif be part of the titlecache if no other field is filled?
> At the moment th...
Andreas Müller
02:20 PM feature request #5573 (Feedback): Cache Strategy for Media Specimen required
Shouldn't the motif be part of the titlecache if no other field is filled?
At the moment the titleCache is the UUID ...
Katja Luther
02:49 PM Revision 2031fd8d (cdmlib): ref #9590: code cleanup -continue
Katja Luther
02:49 PM Revision 3834bd30 (cdmlib): ref #9590: code cleanup
Katja Luther
02:47 PM Revision 0cc955fe (cdmlib): ref #5573 minor changes to MediaSpecimenDefaultCacheStrategyTest
Andreas Müller
02:30 PM bug #9620 (New): Add a preference which defines whether a new uuid is wanted for swap synoym and ...
from #9590:
As the 2 methods are now distinguished only by a boolean parameter we should add a ticket to define by...
Katja Luther
12:32 PM Revision 86f920de (taxeditor): ref #9611: adapt handler to changes in method signatur
Katja Luther
12:09 PM Revision 5fdf87f0 (taxeditor): ref #9611: adapt taxeditor to changes in configurator
Katja Luther
11:30 AM Revision 10db40b3 (cdmlib): cleanup
Andreas Müller
10:55 AM bug #9390: Remaining issues for set secundum dialog
The line break is probably not so critical so I don't think we urgently need a self made dialogue. But I don't know h... Andreas Müller
10:49 AM Revision 7cbe1369 (cdmlib): ref #9601, ref #9611 by default don't include MAN and ppSyns for setS...
Andreas Müller
10:25 AM bug #9612 (Closed): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
Ja, die sollte weg, dass die hier keinen Sinn macht, meinte ich auch mit "seems like a copy of some other test."
...
Andreas Kohlbecker
10:23 AM bug #9605 (Closed): Disable Details View for structure and property trees in character editor
This works as expected now Andreas Müller
10:17 AM Revision 2771d5a7 (cdmlib): ref #9612 removing unrelated test method and clarifying the remainig ...
Andreas Kohlbecker
10:08 AM bug #9601: Set secundum for subTree does not work for misapplied names
I adapted default value for MAN and ppSyn. For discussion see #9611#note-13 Andreas Müller
09:57 AM bug #9601: Set secundum for subTree does not work for misapplied names
Having 3 parameters for overwriteExistingXXX makes the UI complex and has not much added value. See discussion at #96... Andreas Müller
10:05 AM Revision a6b03e32 (cdmlib): ref #9601, ref #9611 by default don't include MAN and ppSyns for setS...
Andreas Müller
09:57 AM Revision a3247a01 (cdmlib): ref #9601, ref #9611 have only a single overwriteExisting parameter f...
Andreas Müller
09:46 AM Revision e4b84e5f (cdmlib): cleanup
Andreas Müller
08:37 AM Revision d43e5395 (taxeditor): ref #8471: adapt label provider to show icon for computed descript...
Katja Luther

05/11/2021

11:34 PM Revision 84f29819 (taxeditor): ref #9590 use boolean parameter newUuidForAcceptedTaxon instead of...
Andreas Müller
11:31 PM Revision 96d47ae0 (cdmlib): ref #9590 use boolean parameter newUuidForAcceptedTaxon instead of 2 ...
Andreas Müller
11:22 PM Revision 894e913a (cdmlib): cleanup
Andreas Müller
11:21 PM bug #9587 (Feedback): Unsaved changes are lost when trying to open a taxon a second time
This does not seem to work if a taxon is used multiple times. E.g. if you search for "Sectest cdcfd" in rem_conf_am a... Andreas Müller
11:11 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Also I guess by default we should switch off "apply to MAN err. sec." and "apply to ppsyn syn. sec." as most projects... Andreas Müller
11:07 PM feature request #9611 (Feedback): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Similar to the setPublishForSubtree dialog we should separate those parameters that do hold for all taxon types a bit... Andreas Müller
10:38 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
As the 2 methods are now distinguished only by a boolean parameter we should add a ticket to define by preferences if... Andreas Müller
10:36 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
To me it looks like the code commented with "//Move descriptions to new taxon" is fully redundant in both methods. If... Andreas Müller
10:33 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
Also there is a looot of commented code still in the methods. Also some warning.
Can you please remove those parts o...
Andreas Müller
10:27 PM bug #9590 (Feedback): ObjectDeletedException when swap synonym and accepted taxon
I do not understand why we need the lines
~~~
acceptedTaxon.setTitleCache(null, true);
acceptedTaxon.g...
Andreas Müller
10:24 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
Instead of having a new methode I added a new parameter (boolean newUuidForAcceptedTaxon) to the method and unified t... Andreas Müller
10:23 PM bug #9590: ObjectDeletedException when swap synonym and accepted taxon
The original problem (re-save) is fixed with d4149686.
Andreas Müller
10:21 PM Revision 37c6014e (cdmlib): ref #9590 use boolean parameter newUuidForAcceptedTaxon instead of 2 ...
Andreas Müller
10:16 PM Revision 8bf7ecd2 (cdmlib): cleanup
Andreas Müller
06:57 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
>What if this information is to be shown the Data Portal, would you just write "Cambridge 1935" without stating which... Andreas Müller
06:03 PM bug #9618 (Resolved): fix historic NomenclaturalCodeEdition names ICN -> ICBN
You mean the "Suggestion" above?
I do not understand why this needs to be a method for NomenclaturalCode.
Why n...
Andreas Müller
04:46 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
The Taxeditor is not the only UI we have. There is the UI where I took the screenshot from, therefore I don't quite u... Andreas Kohlbecker
04:35 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
But I do not understand what we need the abbreviation for. It is really an important information to show the abbrevia... Andreas Müller
04:30 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
I was not in cc of this ticket anymore therefore I missed the discussion. Andreas Müller
03:09 PM bug #9618 (Feedback): fix historic NomenclaturalCodeEdition names ICN -> ICBN
Andreas Müller wrote:
> NomenclaturalCodeEdition entry names are pure enum "names" not used for anything else. So we...
Andreas Kohlbecker
06:45 PM bug #9612: ROLE_USER_MANAGER is missing as a group in FirstDataImporter
But I also do not understand what the testInsertData() test method is for. It does not seem to be related to first da... Andreas Müller
06:42 PM bug #9612 (Resolved): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
The addMissingAuthority method is a private method that is explicitly tested in testBlankDB by the result dataset "Fi... Andreas Müller
05:57 PM bug #9612: ROLE_USER_MANAGER is missing as a group in FirstDataImporter
Andreas Kohlbecker wrote:
> implementation ok, the `FirstDataInserterTest` however looks like it has never been impl...
Andreas Kohlbecker
05:39 PM bug #9612 (In Progress): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
implementation ok, the `FirstDataInserterTest` however looks like it has never been implemented, seems like a copy of... Andreas Kohlbecker
06:43 PM feature request #9613 (Closed): Use fixed uuids for roles project manager, publish and user manager
Andreas Müller
05:57 PM feature request #9613: Use fixed uuids for roles project manager, publish and user manager
can be closed in principle, but see #9612 first. Andreas Kohlbecker
06:26 PM task #9300: Name Page: harmonize media specimen lectotype representations
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > so should we change status to "in progress" as questions are ...
Andreas Müller
06:01 PM Revision a306e68c (cdmlib): ref #9618 add NomenclaturalCodeEdition.abbrev (some abbrevs are stil...
Andreas Müller
05:47 PM bug #9185 (Closed): DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(....
no longer such NPEs in the logs Andreas Kohlbecker
05:40 PM bug #9606 (Closed): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
yes Andreas Kohlbecker
05:30 PM feature request #9619 (Closed): Model changes for taxon concept strategy
Tested on test server. The new columns appear as expected. Andreas Müller
03:29 PM feature request #9619 (Resolved): Model changes for taxon concept strategy
Andreas Müller
05:28 PM task #9536 (Closed): Remove old single source citation and microCitation columns for secundum and...
Tested on test server, works as expected after server ran update script Andreas Müller
05:22 PM feature request #9575 (Closed): Allow flag to include authors in taxon and name search in TaxEditor
works as expected now Andreas Müller
05:19 PM task #9614 (Closed): Use underscore as word separator for all role based groups
looks good Andreas Kohlbecker
05:13 PM feature request #9597 (Resolved): Improve formatting of MediaSpecimen in TypeDesignationWorkingSe...
Andreas Kohlbecker wrote:
> please can you clarify what the expected new output is?
>
> I am assuming this repres...
Andreas Müller
04:24 PM feature request #9597 (Feedback): Improve formatting of MediaSpecimen in TypeDesignationWorkingSe...
please can you clarify what the expected new output is?
I am assuming this representation in the new one ".... Ger...
Andreas Kohlbecker
04:43 PM task #9617: Rename ICNB to ICNP
Andreas Kohlbecker wrote:
> please consider the discussion in #9618 before closing this ticket, as the question ther...
Andreas Müller
03:43 PM task #9617: Rename ICNB to ICNP
please consider the discussion in #9618 before closing this ticket, as the question there is highly related. Andreas Kohlbecker
03:40 PM task #9617 (Closed): Rename ICNB to ICNP
I tink this can be closed. ICNB/P is not yet really used anyway. Andreas Müller
12:33 PM task #9617 (Resolved): Rename ICNB to ICNP
Applied in changeset commit:cdmlib|a918965a9529a628c997456fd5810338a2f7443f. Andreas Müller
04:34 PM bug #9366 (Closed): Specimen type designation with specimen having only collection name but not c...
implementation looks correct, can be closed Andreas Kohlbecker
03:52 PM Revision e4c6e7b3 (cdmlib): ref #9617 javadoc adaptations
Andreas Müller
03:48 PM Revision 084b31e9 (taxeditor): ref #9617 change label for ICNP in taxeditor
Andreas Müller
03:46 PM Revision c3391e45 (taxeditor): cleanup
Andreas Müller
03:39 PM Revision f785c3cc (cdmlib-apps): cleanup
Andreas Müller
03:39 PM Revision d3fb19db (cdmlib-apps): add EuroMedDistributionAggregationActivator
Andreas Müller
03:39 PM Revision 58a29e3b (cdmlib-apps): add CactaceaeIdentifierActivator
Andreas Müller
03:38 PM Revision 7fd0cf17 (cdmlib-apps): ref #9617 rename ICNB to ICNP in cdmlib-app
Andreas Müller
03:32 PM Revision 63fb5a6d (taxeditor): ref #6359 improve reporting for longrunning tasks with UpdateResul...
Andreas Müller
03:06 PM Revision cc21d978 (taxeditor): ref #8471: disable computed descriptions - supplemental data
Katja Luther
03:02 PM Revision 0858c777 (taxeditor): ref #8471: disable computed descriptions
Katja Luther
02:35 PM Revision 90ca7c0d (taxeditor): ref #9536 fix taxeditor test for removed classification.reference_id
Andreas Müller
02:06 PM Revision 98e684f7 (taxeditor): ref #9617 replace ICNB to ICNP in taxeditor (cont.)
Andreas Müller
01:35 PM Revision 6d6ca639 (taxeditor): ref #9617 replace ICNB to ICNP in taxeditor
Andreas Müller
01:35 PM Revision 3d012c19 (taxeditor): update taxeditor test H2 to 5.23
Andreas Müller
01:35 PM Revision 93aade5e (taxeditor): cleanup
Andreas Müller
01:04 PM Revision 72253758 (cdmlib): ref #9613 adapt uuids in tests
Andreas Müller
12:44 PM Revision 9038b634 (cdm-vaadin): update vaadin test H2 to 5.23
Andreas Müller
12:44 PM Revision 182c851e (cdm-vaadin): ref #9617 update vaadin doc
Andreas Müller
12:42 PM Revision bc589ebc (cdmlib): update cached model to 5.23
Andreas Müller
12:36 PM Revision c190b965 (cdmlib): update cdmlib test H2 to 5.23
Andreas Müller
12:35 PM Revision 4488955c (cdmlib): ref #9617 javadoc in rank class
Andreas Müller
12:31 PM Revision a918965a (cdmlib): fix #9617 rename ICNB to ICNP in cdmlib
Andreas Müller
12:16 PM Revision c8e51fc7 (cdmlib): upgrade to v5.23
Andreas Müller
12:16 PM Revision 81c55de3 (cdmlib): ref #9613 change uuid for role project manager as it was used also fo...
Andreas Müller
12:12 PM Revision 2cfe7954 (cdmlib): ref #9539 add clone for availableFor
Andreas Müller
12:05 PM bug #6359 (Resolved): Remaining issues secundum for subtrees
Andreas Müller
12:04 PM Revision 6c880f75 (cdmlib): cleanup
Andreas Müller
12:03 PM Revision 2368acec (cdmlib): ref #9619 add conceptId, conceptDefinitions, conceptStatus, taxonType...
Andreas Müller
10:59 AM bug #9615 (New): Opttions for schema creation in empty data bases.
Thank you for this hint. The cdmlib-remote will create the schema creation when the parameter `cdm.forceSchemaCreate`... Andreas Kohlbecker
10:22 AM feature request #8708 (Duplicate): Sort taxa in distribution editor same as in navigator
this is a duplicate for #9416 and #9354, so I close this ticket as duplicate. Katja Luther
09:31 AM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > This to me seems to be fixed. Katja ...
Katja Luther
09:03 AM bug #9469 (Closed): Searching for a UUID in bulkeditor which does not belong to a record throws a...
Tested it in TeamOrPerson Bulkeditor and Namebulkeditor and got no exception, seems to be fixed. Katja Luther
08:58 AM bug #9605 (Resolved): Disable Details View for structure and property trees in character editor
Andreas Müller wrote:
> Generally this works. However, there is a special situation which shows a strange behavior:
...
Katja Luther
08:57 AM Revision 59cd7375 (taxeditor): ref #9605: correct handling of selection handling when opening ter...
Katja Luther

05/10/2021

05:17 PM task #9617: Rename ICNB to ICNP
Andreas Kohlbecker wrote:
> NOTE: this change in `NomenclaturalCodeEdition` should not affect the `name` of historic...
Andreas Müller
04:28 PM task #9617: Rename ICNB to ICNP
NOTE: this change in `NomenclaturalCodeEdition` should not affect the `name` of historic code editions which where or... Andreas Kohlbecker
03:11 PM task #9617 (Closed): Rename ICNB to ICNP
Since certain time the code is better called ICNP. See https://en.wikipedia.org/wiki/International_Code_of_Nomenclatu... Andreas Müller
05:16 PM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
NomenclaturalCodeEdition entry names are pure enum "names" not used for anything else. So we can rename them but ther... Andreas Müller
04:35 PM bug #9618 (Closed): fix historic NomenclaturalCodeEdition names ICN -> ICBN
As of 2012 the IAPT has renamed the code editions to ICN, older code editions like the Vienna code and former release... Andreas Kohlbecker
05:06 PM feature request #9619 (Closed): Model changes for taxon concept strategy
In the taxonId meeting 2021-03-21 we agreed on the following changes
Class: Taxon
Attribute: conceptId
Type:...
Andreas Müller
10:28 AM Revision 85a5a250 (cdmlib): add byKey method to CondensedDistributionRecipe
Andreas Müller
10:28 AM Revision 89dc9826 (cdmlib): cleanup
Andreas Müller
10:10 AM Revision e5209232 (cdmlib): fix exception in cdmlight
Katja Luther
09:08 AM feature request #9616 (New): Reference for condensed distribution string
mail WB:
Eine (auch jetzt) offene Frage ist, wie man mit Referenzen innerhalb des Strings oder für den gesamten Fa...
Katja Luther
08:56 AM Revision 67c233dc (cdmlib): cdmlight: move condensed distribution string to simple facts table
Katja Luther

05/07/2021

01:35 AM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
we have discussed this Andreas Müller
01:32 AM feature request #6718 (Duplicate): Constistent TypeDesignation representation creation
Close this ticket as it is only a master (subtickets are tagged by "type designation") Andreas Müller
01:19 AM bug #9588: Specimen Tree View: Duplicate derivatives
The example data look ok, but not fully similar to the reported data structure from production. Therefore I suggest t... Andreas Müller
01:12 AM bug #9609: Use DerivedUnit or FieldUnit for DetailsView of tree editor
Generally this is not so urgent but should be done at some time. Andreas Müller
12:17 PM bug #9609: Use DerivedUnit or FieldUnit for DetailsView of tree editor
as we want to release next week I move this ticket to the next milestone Katja Luther
01:11 AM bug #9615 (Feedback): Opttions for schema creation in empty data bases.
The required functionality exists in the taxeditor:
![](picture914-1.png)
therefore I suggest to close this tic...
Andreas Müller
08:34 PM bug #9615 (New): Opttions for schema creation in empty data bases.
stack trace from cdmlib-remote-webapp startup:
~~~~
Caused by: org.springframework.beans.BeanInstantiationExcept...
Andreas Kohlbecker
04:49 PM Revision 163868e4 (cdmlib): ref #9607 trunk for MediaInfoServiceReader
Andreas Kohlbecker
04:48 PM Revision 388873cb (cdmlib): ref #9607 avoiding NPEs in case of file: URIs
Andreas Kohlbecker
04:46 PM Revision 67bc277e (cdmlib): ref #9607 ref #9203 less error-prone api for MediaUriTransformationPr...
Andreas Kohlbecker
04:28 PM Revision 4472b242 (cdmlib): ref #9607 MediaMetadataReader class hierarchy
Andreas Kohlbecker
03:43 PM Revision 220ce244 (cdmlib): ref #6359 finetuning for updatedObjects in ITaxonNodeDao
Andreas Müller
03:43 PM Revision f7c29eba (cdmlib): add sizeAll to SetMap
Andreas Müller
03:36 PM Revision 98034f39 (cdmlib): ref #9607 ref #9203 less error-prone api for MediaUriTransformationPr...
Andreas Kohlbecker
03:36 PM Revision 8c65aedb (cdmlib): ref #9607 fixing typo in class name, legacy method for old code using...
Andreas Kohlbecker
03:36 PM Revision 3d7d94fd (cdmlib): ref #9607 removing obsolete methods
Andreas Kohlbecker
03:36 PM Revision d7840c7b (cdmlib): ref #9607 introducing IMediaInfoFactory interface
Andreas Kohlbecker
03:36 PM Revision e43034c0 (cdmlib): fixing orthography
Andreas Kohlbecker
03:35 PM Revision 952aa532 (taxeditor): ref #9607 using MediaMetadataFileReader.legacyFactoryMethod in editor
Andreas Kohlbecker
03:34 PM Revision b903149c (taxeditor): ignoring symlinks in dev-linked-projects
Andreas Kohlbecker
03:33 PM Revision ffcfac39 (taxeditor): script for easy locally wiring taxeditor with cdmlib projects - ha...
Andreas Kohlbecker
02:58 PM Revision af7821ec (cdmlib): ref #6359 finetuning for updatedObjects in setSecundumForSubtree (dis...
Andreas Müller
02:13 PM Revision 06fb5f40 (cdmlib): ref #6359 adapt setPublishForSubtree to improved progress monitoring
Andreas Müller
02:12 PM Revision 43461f17 (cdmlib): cleanup
Andreas Müller
01:56 PM bug #6359 (In Progress): Remaining issues secundum for subtrees
Andreas Müller
01:54 PM Revision f752535b (cdmlib): ref #6359 make setPublishForSubtree and setSecundumForSubtree cancelabel
Andreas Müller
01:47 PM task #9614: Use underscore as word separator for all role based groups
This is fixed and can be reviewed (except for the schema update which will is not yet enabled) Andreas Müller
01:46 PM task #9614 (Resolved): Use underscore as word separator for all role based groups
Applied in changeset commit:cdmlib|19400ec9f00bbda8b8539082ffb469999ed03977. Andreas Müller
01:35 PM task #9614 (Closed): Use underscore as word separator for all role based groups
such as Project_Manager, Editor_Reference and Editor_Extended_Create.
Currently they use also camel case and hyphen.
Andreas Müller
01:46 PM Revision 19400ec9 (cdmlib): fix #9614 use underscore in role based group names
Andreas Müller
01:27 PM bug #9051: Role Project manager should not have right to edit users and creating a new user with ...
I changed the title of the ticket as the incorrect evaluation of the rights for role_project_manager is the more crit... Andreas Müller
09:53 AM bug #9051 (New): Role Project manager should not have right to edit users and creating a new user...
Katja Luther wrote:
> How are you able to create a user without permission, the admin menu is available only if you ...
Andreas Müller
08:37 AM bug #9051 (Feedback): Role Project manager should not have right to edit users and creating a new...
How are you able to create a user without permission, the admin menu is available only if you are admin or project ma... Katja Luther
01:24 PM bug #9612: ROLE_USER_MANAGER is missing as a group in FirstDataImporter
This is fixed and can be reviewed. Andreas Müller
12:41 PM bug #9612 (Resolved): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
Applied in changeset commit:cdmlib|ee97649b15bfeb922508e97eec12aaecbd04535e. Andreas Müller
10:13 AM bug #9612 (In Progress): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
Andreas Müller
09:52 AM bug #9612 (Closed): ROLE_USER_MANAGER is missing as a group in FirstDataImporter
... for details see #9051
Or is it not wanted to have a group for this as default similar to Group_Project_Manager?
Andreas Müller
01:24 PM feature request #9613: Use fixed uuids for roles project manager, publish and user manager
this is fixed and can be reviewed. Only open issue is that the schema update to 5.23 is not yet activated so old data... Andreas Müller
01:22 PM feature request #9613 (Resolved): Use fixed uuids for roles project manager, publish and user man...
Applied in changeset commit:cdmlib|961bbcd9b37c84a728d020c601843c769ff1de52. Andreas Müller
12:21 PM feature request #9613 (Closed): Use fixed uuids for roles project manager, publish and user manager
Currently only Role_Admin and Role_Remoting seem to have fixed UUIDs though in class persistence.permission.Role UUID... Andreas Müller
01:22 PM Revision a6a14c41 (cdmlib): minor
Andreas Müller
01:22 PM Revision 961bbcd9 (cdmlib): fix #9613 update script for old role uuids
Andreas Müller
12:40 PM Revision 0c924588 (cdmlib): ref #9613 use fixed role uuids for new GrantedAuthorities being roles...
Andreas Müller
12:36 PM Revision 695765fe (cdmlib): handle uuids explicitly and ref #9612 fix role user manager uuid
Andreas Müller
12:36 PM Revision bb6091a3 (cdmlib): cleanup
Andreas Müller
12:36 PM Revision ee97649b (cdmlib): fix #9612 add user manager as group to firstDataInserter
Andreas Müller
12:36 PM Revision 0deb5ff1 (cdmlib): use saveOrUpdate in firstDataInserted.checkGroup()
Andreas Müller
12:36 PM Revision 3fb46e5c (cdmlib): cleanup
Andreas Müller
12:36 PM Revision 4cc9e6d9 (cdmlib): unignore firstDataInserted test
Andreas Müller
12:16 PM task #9595 (Closed): Use DerivedUnit or DnaSample for DnaSampleGeneralDetailElement
this works as expected. Katja Luther
12:09 PM task #9594 (Closed): Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
Implemented the interface and reviewed the mediaspecimen details view. This worked as expected, so we can close this ... Katja Luther
11:42 AM feature request #8922 (Duplicate): Make setting of sec-Reference configurable when moving synonyms.
this is a duplicate for #9340. Katja Luther
11:40 AM feature request #9575 (Resolved): Allow flag to include authors in taxon and name search in TaxEd...
this should be fixed now. Katja Luther
11:36 AM Revision 42b9869e (taxeditor): ref #9575: correct handling of author flag for taxon search
Katja Luther
10:17 AM feature request #9611 (Resolved): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
Please review. Katja Luther
10:16 AM bug #9601 (Closed): Set secundum for subTree does not work for misapplied names
tested it with the new implementation in editor and it works as expected. Katja Luther
10:02 AM Revision cfae30ae (taxeditor): ref #9611: implement set secundum for MAN and pro parte syn
Katja Luther
09:44 AM bug #8521 (Feedback): User details view: Change password button accessible for ROLE_USER_MANAGER
This to me seems to be a duplicate for #8925. If this is true, please close the ticket as duplicate and remove target... Andreas Müller
09:39 AM Revision 8939a1ff (taxeditor): ref #9587: clicking on an already open taxon only set the focus
Katja Luther
09:39 AM Revision f9385c07 (taxeditor): fix #8659: refresh navigator after abcd import
Katja Luther
08:59 AM bug #9587 (Resolved): Unsaved changes are lost when trying to open a taxon a second time
Andreas Müller wrote:
> the cancel works now.
>
> However, this is still unclear: "Diese Operation wird den Edito...
Katja Luther
08:56 AM Revision 7406a8d5 (cdmlib): avoid NPE
Katja Luther

05/06/2021

12:47 AM Revision 9336738a (cdmlib): ref #6359 add session.clear()
Andreas Müller
12:37 AM Revision c0abf59d (taxeditor): fix potential NPE in ProgressMonitorClientManager
Andreas Müller
12:37 AM Revision b953bc70 (taxeditor): cleanup
Andreas Müller
12:34 AM Revision b5aafef0 (cdmlib): fix compile error
Andreas Müller
12:27 AM Revision 6d17bcd3 (cdmlib): cleanup
Andreas Müller
11:45 PM Revision ec8277bd (cdmlib): ref #6359 use subprogressmonitor
Andreas Müller
11:44 PM Revision 0bb7d42f (cdmlib): ref #6359 fix update issue
Andreas Müller
11:22 PM Revision e067bb50 (cdmlib): ref #6359 improve partition handling
Andreas Müller
09:51 PM bug #9588: Specimen Tree View: Duplicate derivatives
Test data: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/d245083e-3bda-435f-9bb3-bdc... Andreas Kohlbecker
07:03 PM bug #9588: Specimen Tree View: Duplicate derivatives
I will do the review after the release as I have no test data on test Andreas Müller
09:00 PM Revision c6ecb751 (cdmlib): cleanup
Andreas Müller
09:00 PM Revision 74e9f695 (cdmlib): ref #9598 fix generics for common deduplicate usage
Andreas Müller
08:59 PM Revision cfa25f63 (cdmlib): ref #6359 improve updated objects behavior
Andreas Müller
08:45 PM feature request #9611: Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
This is a blocker as the current behavior by default sets the error sec and the syn sec which might be unexpected for... Andreas Müller
06:54 PM feature request #9611 (Closed): Implement setSecundumForSubtree for MAN and ppSyns in TaxEditor
this is a follow up from #9601
Parameters are similar to setPublishForSubtree.
The labels should make clear tha...
Andreas Müller
08:32 PM Revision 3cba463f (cdmlib): ref #9598 some parameter renaming and improve updated objects behavior
Andreas Müller
07:51 PM bug #9598 (Closed): Deduplicate NamedAreas with >1 representations and include label in search
I works.
I changed the code the way that it calls the existing method to avoid redundant code.
As this does not...
Andreas Müller
07:47 PM Revision 69d199a5 (cdmlib): cleanup
Andreas Müller
07:47 PM Revision 013cea82 (cdmlib): ref #9598 remove redundant code
Andreas Müller
07:40 PM bug #9587 (Feedback): Unsaved changes are lost when trying to open a taxon a second time
Andreas Müller
07:40 PM bug #9587: Unsaved changes are lost when trying to open a taxon a second time
the cancel works now.
However, this is still unclear: "Diese Operation wird den Editor speichern. Ebenso werden al...
Andreas Müller
07:16 PM bug #9605 (Feedback): Disable Details View for structure and property trees in character editor
Generally this works. However, there is a special situation which shows a strange behavior:
* open character edito...
Andreas Müller
07:11 PM feature request #9575: Allow flag to include authors in taxon and name search in TaxEditor
The problem seems to be flag direction. With the flag NOT set, it works, with the flag set, it does not work. But it ... Andreas Müller
07:06 PM feature request #9575 (Feedback): Allow flag to include authors in taxon and name search in TaxEd...
This does not work correctly yet. I searched for "Arenario Ad*" on rem_conf_am with no result. While search for "Aren... Andreas Müller
07:02 PM bug #9603 (Closed): Sorting in status drop down of distribution editor
Works as expected and also methods that depend on the change were adapted. Andreas Müller
06:55 PM bug #9601: Set secundum for subTree does not work for misapplied names
please review Andreas Müller
06:52 PM bug #9601 (Resolved): Set secundum for subTree does not work for misapplied names
Applied in changeset commit:cdmlib|3b85f95996257c66bec3f57c82deac14356df375. Andreas Müller
06:52 PM Revision 3b85f959 (cdmlib): fix #9601 allow misapplied names and proparte Syns to set secundum fo...
Andreas Müller
06:45 PM Revision b7440493 (cdmlib): remove unnecessary second load
Andreas Müller
06:44 PM Revision b39f1ad2 (cdmlib): cleanup
Andreas Müller
05:38 PM Revision 1aacbc16 (cdmlib): revert unwanted CommonService commit
Andreas Müller
05:20 PM Revision bbb2488d (taxeditor): add service.media to cdmlib exports
Andreas Müller
05:14 PM Revision ca3d3181 (taxeditor): clean up commit 17c6b2e13c7ac
Andreas Müller
04:14 PM Revision 49e5e5a6 (cdmlib): cleanup
Andreas Müller
04:14 PM Revision 3b1da35f (cdmlib): ref #6359, ref #3740 error handling for setPublishForSubtree
Andreas Müller
03:43 PM Revision 48334f5f (taxeditor): ref #9607 adapting to changes in image metadata factories - CdmApp...
Andreas Kohlbecker
03:35 PM bug #8659 (Closed): Taxon navigator: not refreshed after ABCD file import
this is fixed now. Katja Luther
03:34 PM Revision 17c6b2e1 (taxeditor): ref #9607 adapting to changes in image metadata factories
Andreas Kohlbecker
03:23 PM bug #9610 (New): MediaMedadataFileReader (formerly in CdmImageInfo) loads same image file multipl...
For one and the same image file the UriUtils methos `getInputStream()` and `getResourceLength()` are being used multi... Andreas Kohlbecker
03:09 PM Revision 3526156e (cdmlib): ref #9607 moving MediaMetadataService URI transformation to DefaultMe...
Andreas Kohlbecker
02:55 PM task #9607 (In Progress): read image metadata from MediaInfoService if available
Andreas Kohlbecker
02:53 PM Revision 3f04dd4e (cdmlib): ref #9607 replacing class local factory methods and heplers in CdmIma...
Andreas Kohlbecker
02:53 PM Revision 8674bf53 (cdmlib): ref #9607 moving and renaming test class from commons to services
Andreas Kohlbecker
11:15 AM Revision 40113a9f (cdmlib): ref #6359 error handling for setSecundumForSubtree
Andreas Müller
11:04 AM Revision f6dfbc26 (cdmlib): cleanup
Andreas Müller
09:04 AM Revision fbbe5da0 (taxeditor): ref #9609: rename details element classes
Katja Luther
08:59 AM bug #9609 (New): Use DerivedUnit or FieldUnit for DetailsView of tree editor
same reason as for #9594
Implement new details view elements for tree editor and use derived unit and field unit o...
Katja Luther

05/05/2021

06:06 PM bug #9608 (New): UriUtils to use HTTP HEAD requests where possible
where UriUtils need to use HTTP HEAD requests :
* getResourceLength()
* more ?
This can be performance criti...
Andreas Kohlbecker
05:52 PM task #9607 (Closed): read image metadata from MediaInfoService if available
The BGBM digilib image server is now complemented by an instance of the [MediaInfoService](https://github.com/cyberta... Andreas Kohlbecker
05:43 PM Revision 96288777 (cdmlib): handle null values in TaxonNodeByRankAndNameComparator
Andreas Müller
03:15 PM Revision 9201d8aa (taxeditor): cleanup, fix field unit in details views
Katja Luther
01:04 PM Revision e00fef3e (cdm-server): logging of remoting requests with duration per default
Andreas Kohlbecker
11:29 AM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
Andreas Müller wrote:
> in DetailsViewE4.setInput() there is the following code:
>
> ~~~
> if (input instanceof...
Katja Luther
10:58 AM Revision e21cf4b8 (taxeditor): ref #9603: adapt order of named areas in distribution editor
Katja Luther
10:57 AM bug #9603 (Resolved): Sorting in status drop down of distribution editor
please review. Katja Luther
10:40 AM feature request #6718 (Feedback): Constistent TypeDesignation representation creation
there two additional ticket one in cdmlib and one in cdmlib-remote (https://dev.e-taxonomy.eu/redmine/projects/edit/i... Andreas Kohlbecker
09:54 AM Revision 8cec01d8 (taxeditor): fix #9605: disable details for termtree in character editor
Katja Luther
09:53 AM bug #9605: Disable Details View for structure and property trees in character editor
please review Katja Luther
09:52 AM bug #9605 (Resolved): Disable Details View for structure and property trees in character editor
Applied in changeset commit:taxeditor|8cec01d85742928dc10fb695d2f778f627c8414a. Katja Luther
09:24 AM Revision 99e6c066 (cdmlib): fix StringUtils dependency
Andreas Müller
08:53 AM Revision 10cae443 (cdmlib): remove warnings
Andreas Müller
08:38 AM Revision d27905b0 (cdmlib): cleanup
Katja Luther
08:36 AM Revision 1d2247b4 (cdmlib): cleanup
Katja Luther

05/04/2021

11:49 PM Revision 69b464fd (cdmlib): cleanup
Andreas Müller
11:47 PM Revision 03a6bc68 (cdmlib): ref #9590 similary fix clone for TaxonName/NomenclaturalSource
Andreas Müller
11:39 PM Revision d4149686 (cdmlib): ref #9590 fix swap test by fixing SecundumSource clone method and rem...
Andreas Müller
10:43 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
Ahh, correct, there were also the other methods. I corrected the 3rd one now so everything should be correct now. Can... Andreas Müller
04:00 PM bug #9606 (Resolved): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
please review Andreas Müller
03:58 PM bug #9606 (In Progress): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
Andreas Kohlbecker
03:58 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
as said there definitely an NPE in this code line from above
~~~
taxonBase.isInstanceOf(Taxon.class)){
~~~~
T...
Andreas Kohlbecker
03:55 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
Andreas Kohlbecker wrote:
> in these lines of countByTitle() it is obvious:
>
> ~~~java
> TaxonBase<?> taxonBase...
Andreas Müller
03:52 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
But it is not forbidden to pass a null value, and if you follow the method that is called, there you have null values... Andreas Müller
01:59 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
in these lines of countByTitle() it is obvious:
~~~java
TaxonBase<?> taxonBase = taxonService.load(occurrenceConf...
Andreas Kohlbecker
01:55 PM bug #9606 (Feedback): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
Can you give a bit more inside. Any stacktrace available for the NPE?
What exactly is about taxon, taxonbase and nam...
Andreas Müller
01:20 PM bug #9606 (Closed): NullPointerExceptions (NPEs) in OccurrenceServiceImpl

see taxon, taxonBase and name in these methods
* OccurrenceServiceImpl.countByTitle(IIdentifiableEntityServiceCo...
Andreas Kohlbecker
10:42 PM Revision 5f196d28 (cdmlib): ref #9606 fixing also the 3rd potential NPE
Andreas Müller
10:05 PM Revision 8ae625ea (cdmlib): cleanup
Andreas Müller
10:03 PM Revision 1a4b9c63 (cdmlib): ref #9603 adapt TypeDesignationStatusComparator to new semantic of Or...
Andreas Müller
04:13 PM Revision 5939425d (cdm-dataportal): ref #9599 commenting looging
Andreas Kohlbecker
04:09 PM Revision 97fc0f95 (cdmlib): ref #9606 fix another potential NPE
Andreas Kohlbecker
03:55 PM Revision d9a9f2b1 (cdmlib): ref #9606 fix potential NPE
Andreas Müller
03:27 PM task #9599 (Feedback): remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
The tagged titles of TaxonName and TaxonBase do not include the nomenclatural reference
In the portal display of t...
Andreas Kohlbecker
03:00 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
Ok, for model updates it may be problematic. I rather thought on all other taks, like data cleaning and so on, when I... Andreas Kohlbecker
01:36 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
Andreas Kohlbecker wrote:
> wouldn't it be anyway much better to do such cleanup tasks in general via the DAO layer?...
Andreas Müller
01:24 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
wouldn't it be anyway much better to do such cleanup tasks in general via the DAO layer? Andreas Kohlbecker
02:33 PM Revision 96ca9010 (cdmlib): ref #9603: fix natural sort order
Katja Luther
02:22 PM bug #9603 (In Progress): Sorting in status drop down of distribution editor
Katja Luther
02:21 PM bug #9603 (Resolved): Sorting in status drop down of distribution editor
Katja Luther
02:20 PM Revision 641175e9 (taxeditor): ref #9603: adapt to new termOrder values
Katja Luther
12:56 PM bug #9185: DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404...
review: scan logs Andreas Kohlbecker
12:56 PM bug #9185 (Resolved): DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest...
Applied in changeset commit:cdmlib|679982a065408133f36b72f39d2f70d4fe2856fa. Andreas Kohlbecker
11:41 AM bug #9185: DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404...
This error makes cdm-server log hardly readable, hence, it should be solved rather soon. Andreas Kohlbecker
12:56 PM Revision 039f88e8 (cdmlib): clean up
Andreas Kohlbecker
12:56 PM Revision 679982a0 (cdmlib): fix #9185 catching and logging NPE and NestedSevletExecptions properl...
Andreas Kohlbecker
12:38 PM Revision 19732dea (cdmlib): ref #9603: add symbol and symbol2 to TermOrder enum
Katja Luther
12:21 PM Revision 0aba8158 (taxeditor): add symbol1 and symbol2 to sort order of drop down in distribution...
Katja Luther
12:18 PM Revision 2d805720 (cdmlib): fix handling of references for misapplied names
Katja Luther
12:18 PM Revision 316607fa (cdmlib): ref #9603: add new Comparator for term.symbol und term.symbol2
Katja Luther
10:03 AM bug #9605 (Closed): Disable Details View for structure and property trees in character editor
Changes of property tree or structure tree are not persisted in character editor therefore it should not be possible ... Katja Luther
10:02 AM Revision fb6d642f (taxeditor): cleanup
Andreas Müller
10:02 AM Revision 8aaabf50 (taxeditor): ref #9595 , ref #5575 use DnaSampleCacheStrategy in DerivateLabelP...
Andreas Müller
10:02 AM Revision 04443665 (taxeditor): cleanup
Andreas Müller

05/03/2021

11:34 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
If the condition from #note-9 is correct the query looks ok except for the fact that it does not include AUD tables w... Andreas Müller
02:58 PM task #9291 (Feedback): Clear all unnecesary TypeDesignation.citation entities and citationDetails
@Andreas M.: Could you please double check this sql script?
~~~sql
CREATE TEMPORARY TABLE temp_ds_cleanup(
...
Andreas Kohlbecker
02:33 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
All type designations that do not have a state like below must not have a designationSource:
~~~
// NameTypeDesig...
Andreas Kohlbecker
02:10 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
select statement simplified and updated to current model version
~~~sql
SELECT
tn.uuid as TaxonName_uuid, tn...
Andreas Kohlbecker
11:17 PM Revision e657f722 (cdmlib): cleanup
Andreas Müller
11:16 PM Revision 9b463b7f (cdmlib): ref #9604 fix 2 minor issues in tests
Andreas Müller
10:50 PM task #9604 (Resolved): Split bibliographic reference cache strategy and nomenclatural formatter +...
Applied in changeset commit:cdmlib|dd9ab0c7f9f0c454126a7958f5d1e4f8e70c072a. Andreas Müller
10:35 PM task #9604 (Closed): Split bibliographic reference cache strategy and nomenclatural formatter + o...
Andreas Müller
10:50 PM Revision dd9ab0c7 (cdmlib): fix #9604 bibliographic ReferenceDefaultCacheStrategy and Nomenclatur...
Andreas Müller
10:50 PM Revision 3d77af6c (cdmlib): remove duplicated methods in TaxonNameDefaultCacheStrategy
Andreas Müller
06:06 PM bug #9603 (Closed): Sorting in status drop down of distribution editor
mail AM:
Bei der Sortierung nach „natural“ scheint mir was falsch zu laufen. Wenn ich das auswähle kommt „endemic“...
Katja Luther
05:58 PM bug #9602 (Closed): cdm-server must not start instances with severe db connection problems
Andreas Kohlbecker
05:31 PM bug #9602 (Closed): cdm-server must not start instances with severe db connection problems
The cdm-server must not start instances with db connection problems.
Currently such instances show a unclear erro...
Andreas Kohlbecker
05:36 PM Revision 534e39de (cdmlib): ref #9602 more clear execption handling in case of jndi data source p...
Andreas Kohlbecker
05:32 PM Revision 4269efd3 (cdm-server): ref #9602 preventing instances from starting up in case of db con...
Andreas Kohlbecker
04:00 PM Revision 99186f90 (cdmlib): ref #9590: set test to ignore
Katja Luther
03:43 PM Revision 4634862e (cdmlib): ref #9590: add swapSynonymAndAcceptedTaxonNewUuid and test -continue
Katja Luther
03:43 PM Revision f9d8be39 (cdmlib): ref #9590: add swapSynonymAndAcceptedTaxonNewUuid and test
Katja Luther
03:26 PM Revision af68bbe0 (cdm-dataportal): ref #9599 better error reporting
Andreas Kohlbecker
02:58 PM bug #9601 (Closed): Set secundum for subTree does not work for misapplied names
Hallo,
anscheinend wird die “err. sec.“ Referenz nicht ersetzt, wenn man den Tree-Replace macht (Fall: Cuba – Orchid...
Katja Luther
02:50 PM bug #9600 (In Progress): Delete of taxon with unselected name delete returns warning
The name deletion was explicitly not selected but there are several warnings:
![](picture757-1.png)
Katja Luther
12:13 PM Revision 603725aa (cdm-dataportal): ref #9599 showing error in case of reference/{uuid}/nomenclat...
Andreas Kohlbecker
12:12 PM task #9599 (In Progress): remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
Andreas Kohlbecker
12:03 PM Revision 6aad03df (cdmlib): RegistrationTest test clarified
Andreas Kohlbecker
11:39 AM Revision 9bcb6887 (taxeditor): adapt NamedAreaSearchField -> TermSearchField in editor
Katja Luther
10:26 AM bug #9598 (Feedback): Deduplicate NamedAreas with >1 representations and include label in search
Katja Luther wrote:
> It should be adapted for the list of vocabularies, too.
>
> ![](picture595-1.png)
>
> T...
Katja Luther
09:40 AM bug #9598: Deduplicate NamedAreas with >1 representations and include label in search
It should be adapted for the list of vocabularies, too.
![](picture595-1.png)
The used method is listByTermType()
Katja Luther
10:25 AM Revision 62b306e0 (cdmlib): ref #9598: adapt termvocabulary list to avoid duplicates
Katja Luther
09:28 AM Revision 21be58d8 (cdmlib): rename DefaultReferenceCacheStrategy to ReferenceDefaultCacheStrategy
Andreas Müller
09:16 AM Revision b81c8fe7 (cdmlib): rename NamedAreaSearchField to TermSearchField
Andreas Müller
09:07 AM Revision a5516896 (cdmlib): cleanup
Andreas Müller
08:45 AM Revision d1169fcf (cdmlib): add country vocabulary uuid to NamedArea
Andreas Müller

05/02/2021

11:54 PM feature request #9539 (In Progress): Implement availableFor for ExtensionType, MarkerType, Annota...
Andreas Müller
11:54 PM bug #9598: Deduplicate NamedAreas with >1 representations and include label in search
Please review
... and please remove commented code in the respective method if not necessary anymore. Please also ...
Andreas Müller
11:27 PM Revision b9314362 (cdmlib): fix #9598 add search by label and tests
Andreas Müller
10:46 PM Revision 0ff7ce5c (cdmlib): fix #9598 add deduplication to DefinedTermDaoImpl.listNamedAreaByAbbr...
Andreas Müller
10:44 PM Revision 715f62d1 (cdmlib): cleanup
Andreas Müller

05/01/2021

09:55 PM bug #9598 (Resolved): Deduplicate NamedAreas with >1 representations and include label in search
Applied in changeset commit:cdmlib|587733cec3aafb1614ddb925bebb1aa4f212f5ff. Andreas Müller
09:54 PM bug #9598 (Closed): Deduplicate NamedAreas with >1 representations and include label in search
Andreas Müller
09:55 PM Revision 587733ce (cdmlib): fix #9598 add deduplication to DefinedTermDaoImpl.listNamedArea(...)
Andreas Müller
09:52 PM Revision c32d6e53 (cdmlib): cleanup
Andreas Müller
08:34 PM Revision 7b376b96 (cdmlib): minor
Andreas Müller
08:34 PM Revision 321f715b (cdmlib): fix potential NPE in DescriptionAggregation if TaxonNode sortindex is...
Andreas Müller
08:31 PM Revision 2d147336 (cdmlib): ref #9327 adapt aggregation tests for secundum original source
Andreas Müller
08:26 PM Revision 2bbd9c25 (cdmlib): ref #9539 implement base classes for available for and some first met...
Andreas Müller
08:13 PM Revision 4cef5d18 (cdmlib): cleanup
Andreas Müller

04/30/2021

10:55 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
Andreas Müller wrote:
> Andreas Müller wrote:
> > This to me seems to be fixed. Katja can you check, and if true ad...
Andreas Müller
10:53 PM bug #9302: Phycobank related issues for TypeDesignation formatting
Check how far this is still open.
Closed issues where implemented in 5.18 or prior.
Andreas Müller
10:49 PM bug #9398: ObjectNotFoundException when removing a synonym that is used as NameInSource
This still seems to be an open issue I guess? And it should have high priority as ObjectNotFoundException should be a... Andreas Müller
10:37 PM feature request #5575 (Feedback): DNA Sample requires CacheStrategy
The initialization of the cache strategy does not seem to fully work yet. See comment in #9595#note-2 Andreas Müller
10:26 PM feature request #5573: Cache Strategy for Media Specimen required
I think this is fully implemented now. If users want it differently they may tell us by time and we can adapt the cod... Andreas Müller
08:27 PM feature request #5573: Cache Strategy for Media Specimen required
>An iconotyp may have completely different requirements than a scan that is derived from a preserved specimen.
Med...
Andreas Müller
10:01 PM feature request #7612 (Duplicate): CacheStrategy for MediaSpecimens
This focus of this ticket is not fully clear. Is it only about MediaSpecimen or about MediaSpecimen used as types.
...
Andreas Müller
09:49 PM task #9595 (Resolved): Use DerivedUnit or DnaSample for DnaSampleGeneralDetailElement
This is implemented. However it does not work similar to MediaSpecimen as DnaSample somehow always gets the DerivedUn... Andreas Müller
07:06 AM task #9595 (Closed): Use DerivedUnit or DnaSample for DnaSampleGeneralDetailElement
same reason as for #9594
This is also a step forward to not use DerivedUnitFacade in SpecimenTreeEditor details vi...
Andreas Müller
09:35 PM Revision faec6529 (cdmlib): cleanup
Andreas Müller
09:35 PM Revision b5c91e8c (cdmlib): ref #9597 handle MediaSpecimen and its sources correctly in TypeDesig...
Andreas Müller
09:23 PM feature request #9597: Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting
I adapted the formatting of MediaSpecimen type designations sources to the general source handling. This also allows ... Andreas Müller
09:14 PM feature request #9597 (Resolved): Improve formatting of MediaSpecimen in TypeDesignationWorkingSe...
Applied in changeset commit:cdmlib|11e24052308c971ec1959f5e8219ff1962a61a7c. Andreas Müller
08:04 PM feature request #9597 (Closed): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet ...
copied from #9279
Sources for MediaSpecimen should be formatted in the same way as elsewhere
Example:
* Old no...
Andreas Müller
09:14 PM Revision 11e24052 (cdmlib): fix #9597 handle MediaSpecimen and its sources correctly in TypeDesig...
Andreas Müller
08:24 PM feature request #6718: Constistent TypeDesignation representation creation
As we do have TypeDesignationSetManager in cdmlib now and all open tickets are dataportal related I guess we could ei... Andreas Müller
08:21 PM feature request #5950 (Duplicate): Add duplicate method for type designations
I guess this duplicates #6413 Andreas Müller
08:05 PM feature request #9279 (Closed): Improve type designation formatting and TypeDesignationSetManager
move open issues to new tickets #9596 and #9597 and close this ticket. Andreas Müller
08:01 PM feature request #9596 (New): Open issues for TypeDesignationWorkingSet
copied from #9279
* replace TypedEntityReference by real entities as they are not necessary or use them only where...
Andreas Müller
07:52 PM Revision 9ff02ad7 (cdmlib): cleanup
Andreas Müller
02:39 PM Revision a9e9e5a9 (cdm-dataportal): using again const instead of define()
Andreas Kohlbecker
09:26 AM Revision e651eaf3 (cdmlib): ref #7612, ref #5573, ref #5575 use mostSignificantIdentifier instead...
Andreas Müller
09:25 AM Revision bad2d5b5 (cdmlib): ref #9595 shortcut to load single identifier
Andreas Müller
08:56 AM Revision 4899e12f (cdmlib): ref #9595 load sample designation preferred to other identifiers for ...
Andreas Müller
08:55 AM Revision 16419c4d (cdmlib): ref #9595 load empty DnaSamples with DnaSampleDefaultCacheStrategy
Andreas Müller
07:42 AM Revision f3876100 (cdmlib): cleanup
Andreas Müller
07:42 AM Revision a1dce9c6 (cdmlib): ref #9595 add SampleDesignation uuid to DefinedTerm
Andreas Müller
07:17 AM Revision 3b33d596 (cdmlib): minor
Andreas Müller
07:17 AM Revision 05bdc44f (cdmlib): ref #9595 move xxxPreferredDetermination from facade to SpecimenOrObs...
Andreas Müller
07:15 AM Revision 957e3207 (cdmlib): ref #5573, ref #7612 some doc
Andreas Müller

04/29/2021

11:16 PM Revision 97e308a9 (taxeditor): cleanup and remove generics from Identifier class
Andreas Müller
11:06 PM Revision d4557c24 (cdmlib): cleanup
Andreas Müller
11:06 PM Revision 0a140219 (cdmlib): remove generics from Identifier class
Andreas Müller
09:57 PM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
in DetailsViewE4.setInput() there is the following code:
~~~
if (input instanceof MediaSpecimen && !(this.active...
Andreas Müller
04:34 PM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
Note: the implementation in specimen list editor leads to a message that the specimen can not be edited in details vi... Andreas Müller
04:26 PM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
we could do something similar for DnaSample Andreas Müller
04:25 PM task #9594 (Resolved): Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
please review Andreas Müller
04:19 PM task #9594 (Closed): Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
It does not make sense to use DerivedUnitFacade here as the specific type is known. Also it the facade creates proble... Andreas Müller
09:48 PM feature request #4363 (Closed): Show more informative message for unsupported specimen structures...
The exception handling seems to be correct now and this ticket can be closed. Andreas Müller
03:56 PM feature request #4363: Show more informative message for unsupported specimen structures in speci...
See also comment in DetailsViewerE4.showParts where a DerivedUnitFacade is created only to get the error message. Andreas Müller
05:10 PM Revision 3a78b28a (taxeditor): cleanup
Andreas Müller
05:04 PM bug #5581 (Closed): Specimen title cache does not show up correctly after editing
For MediaSpecimen and DnaSample a cache strategy exists now. So I close this ticket. Andreas Müller
05:00 PM Revision 1cd6de7e (taxeditor): ref #9594 , ref #5573, ref #7612 use MediaSpecimenCacheStrategy in...
Andreas Müller
04:50 PM Revision 0d672864 (taxeditor): ref #9594 use MediaSpecimen as base unit for MediaSpecimenGeneralD...
Andreas Müller
04:29 PM feature request #5573: Cache Strategy for Media Specimen required
A first version is implemented now. This cache strategy differs from default derived unit cache strategies in the way... Andreas Müller
04:22 PM feature request #5573: Cache Strategy for Media Specimen required
To use the new cache strategy the editor needs to be refactored a bit: #9594 Andreas Müller
04:25 PM Revision d4b9ef81 (taxeditor): ref #9594 use MediaSpecimen as base unit for MediaSpecimenGeneralD...
Andreas Müller
04:06 PM Revision a0fcd061 (taxeditor): cleanup
Andreas Müller
03:42 PM feature request #9575 (Resolved): Allow flag to include authors in taxon and name search in TaxEd...
this is fixed, please review. Katja Luther
03:32 PM bug #9593 (Closed): Changing and saving a PolytomousKey throws ConcurrentModificationException
Andreas Müller wrote:
> Probably this is ok, though I wonder why the root node is not doing the same job as it is me...
Katja Luther
01:12 PM bug #9593 (Feedback): Changing and saving a PolytomousKey throws ConcurrentModificationException
Probably this is ok, though I wonder why the root node is not doing the same job as it is merge-cascaded. But as the ... Andreas Müller
03:31 PM Revision 78dff9c8 (cdmlib): ref #9593: revert some changes in taxonDao not belonging to this ticket
Katja Luther
02:31 PM bug #5885 (Worksforme): classification.rootNode has a lot of NULL children
Andreas Müller wrote:
> Katja, can you please have a look if this is still an open issue and if yes if it is related...
Katja Luther
01:17 PM bug #5885: classification.rootNode has a lot of NULL children
Katja, can you please have a look if this is still an open issue and if yes if it is related to the known hibernate N... Andreas Müller
01:24 PM Revision cbc54d4e (taxeditor): cleanup
Andreas Müller
12:51 PM task #6981: Migrate to Java 9 (to 11?)
we should consider migrating to Java 11 directly, maybe to java 17?
Java 11 is the latest LTS release with Premier...
Andreas Kohlbecker
12:29 PM Revision 7fa35f9f (cdm-dataportal): bumping minimin php version to 5.6
Andreas Kohlbecker
12:25 PM Revision 8896122f (cdm-dataportal): Merge branch 'support/5.22.1' into develop
Andreas Kohlbecker
12:24 PM feature request #9329 (Closed): Implement sec reference as original source in dataportal
Andreas Kohlbecker
11:50 AM feature request #9329 (In Progress): Implement sec reference as original source in dataportal
Andreas Kohlbecker
12:23 PM Revision 32692cf9 (cdm-dataportal): using again const instead of define()
Andreas Kohlbecker
12:18 PM Revision 4c380cc0 (cdm-dataportal): ref #9329 adapting data portal to ->sec reference being now -...
Andreas Kohlbecker
12:01 PM Revision 44b0f5cd (taxeditor): Merge branch 'hotfix/5.22.1'
jenkins
11:59 AM Revision d1596444 (cdmlib): ref #9329 adapting json configuration to new sec reference structure ...
Andreas Kohlbecker
11:49 AM Revision cf8e9d9f (cdm-dataportal): ref #9329 adapting data portal to ->sec reference being now -...
Andreas Kohlbecker
11:18 AM Revision 7653306e (taxeditor): fix exception if no secundum source is available
Katja Luther
11:15 AM Revision de21609a (cdm-dataportal): ref #9591 adapring test to modified media specimens short title
Andreas Kohlbecker
10:55 AM Revision 64498bd0 (taxeditor): Updated version in pom / project files to taxeditor version : 5.22...
jenkins
08:43 AM Revision 21198df4 (cdmlib): ref #9575: test adaption
Katja Luther
08:15 AM Revision 2732777a (cdmlib): ref #9575: revert test adaption
Katja Luther
08:09 AM Revision ae8c38b6 (taxeditor): ref #9575: add possibility to search with authors - missing l10n f...
Katja Luther

04/28/2021

08:28 PM Revision f70a9ae2 (cdmlib): cleanup
Andreas Müller
08:28 PM Revision c3afc00d (cdmlib): ref #9575 adapt tests for editor search with authors
Andreas Müller
07:07 PM Revision 9aa30fc8 (cdmlib): ref #1602, ref #5573, ref #7612 Include artist in MediaDefaultCacheSt...
Andreas Müller
07:01 PM Revision c4b19e61 (cdmlib): cleanup
Andreas Müller
05:06 PM Revision d0cd78c9 (cdmlib): ref #7612, ref #5573 adapt MediaSpecimenDefaultCacheStrategy to show ...
Andreas Müller
05:06 PM Revision 439789dd (cdmlib): cleanup
Andreas Müller
04:06 PM Revision 6e8f0c6d (cdmlib): ref #9591 defined order of item in FieldUnitDTO.TreeLabels
Andreas Kohlbecker
01:53 PM Revision 6b8fd990 (taxeditor): ref #9575: add possibility to search with authors
Katja Luther
01:50 PM Revision 5e985bbc (cdmlib): ref #9575: adapt findTaxaAndNames for doAuthors, add test case
Katja Luther
12:58 PM Revision 4ce176cc (cdmlib): ref #9593: add polytomouskey handling in PostMergeEntityListener to a...
Katja Luther
12:04 PM bug #9593 (Resolved): Changing and saving a PolytomousKey throws ConcurrentModificationException
Added the handling of polytomous key in removeNullFromCollection because the editor saves the whole key. Katja Luther
11:46 AM bug #9593: Changing and saving a PolytomousKey throws ConcurrentModificationException
Andreas Müller wrote:
> This only seems to happen if the sortindex of the PolytomousKey nodes is not up-to-date. Aft...
Katja Luther
12:02 PM Revision 98ac7b26 (cdmlib): ref #9593: add polytomouskey handling in PostMergeEntityListener to a...
Katja Luther

04/27/2021

04:50 PM Revision 4e150e0c (cdm-dataportal): ref #9591 adapting tests to new specimen short title - 2
Andreas Kohlbecker
04:41 PM bug #9593: Changing and saving a PolytomousKey throws ConcurrentModificationException
This only seems to happen if the sortindex of the PolytomousKey nodes is not up-to-date. After calling refresh on the... Andreas Müller
03:43 PM bug #9593 (Closed): Changing and saving a PolytomousKey throws ConcurrentModificationException
Andreas Müller
03:32 PM Revision b19714a3 (cdmlib): ref #9590: fix test
Katja Luther
03:14 PM Revision fbb8b34c (taxeditor): cleanup
Andreas Müller
03:06 PM Revision 58832d5a (cdmlib): ref #9590: fix test
Katja Luther
02:54 PM feature request #9592 (New): SpecimenOrObservationBaseDTO: field for hidden derivatives
`OccurrenceServiceImpl.findRootUnitDTOs(DerivedUnitDTO derivedUnitDTO, ..)` hides derivatives of originals which are ... Andreas Kohlbecker
02:54 PM bug #9590 (Resolved): ObjectDeletedException when swap synonym and accepted taxon
The method is adapted so that the taxon and the synonym keep the same, only the names are swaped, this also matches t... Katja Luther
09:17 AM bug #9590 (Closed): ObjectDeletedException when swap synonym and accepted taxon
mail Nadja Korotkova:
das passierte eben beim Vertauschen von Synonym und accepted

Viele Grüße
Nadja

~~~ ...
Katja Luther
02:47 PM Revision 8d1b97de (cdmlib): ref #9590: adapt business test
Katja Luther
02:39 PM feature request #9591 (Closed): Specimen Tree View: concise label for derivatives
Andreas Kohlbecker
12:15 PM feature request #9591 (Closed): Specimen Tree View: concise label for derivatives
The title cache of derivatives includes the field unit information. In the derivaation tree this is redundant informa... Andreas Kohlbecker
02:38 PM Revision f6466bef (cdm-dataportal): ref #9591 adapting tests to new specimen short title
Andreas Kohlbecker
02:36 PM Revision 6d55830a (cdm-dataportal): ref #9591 adapting portal to renamed dto field specimenIdenti...
Andreas Kohlbecker
02:33 PM Revision 9d356033 (cdmlib): ref #9591 reaming dto field specimenIdentifier -> shortTitle & adding...
Andreas Kohlbecker
01:14 PM Revision d5dd8738 (cdmlib): ref #9590: add synonym with secundum reference to swap test
Katja Luther
01:11 PM Revision 1869f60c (cdmlib): ref #9590: fix, only swap the names swapSynonymAndAccepted
Katja Luther
01:10 PM Revision 99b383ea (taxeditor): avoid widgetIsDisposed exception
Katja Luther
12:17 PM Revision 5f3a4743 (cdm-dataportal): ref #9591 using dto.specimenIdentifier as short label for der...
Andreas Kohlbecker
11:40 AM bug #9588: Specimen Tree View: Duplicate derivatives
problem solved, please review Andreas Kohlbecker
11:39 AM Revision 0a9f8e05 (cdm-dataportal): ref #9588 fixing wrong expectations in test
Andreas Kohlbecker
11:38 AM Revision f3131c7a (cdm-dataportal): fixing wrong expectations in test
Andreas Kohlbecker
10:35 AM Revision 96b0a8c6 (taxeditor): fix exception if no secundum source is available
Katja Luther
09:19 AM Revision 38ef7902 (cdmlib): ref #9590: fix ObjectDeletedException in swapSynonymAndAccepted
Katja Luther

04/26/2021

09:32 PM Revision 367cb47d (cdmlib): ref #9589: adapt test
Katja Luther
05:12 PM bug #9589 (Resolved): Move synonym to another accepted taxon ignores the selected new sec reference
this should be fixed, please review Katja Luther
05:09 PM bug #9589 (Closed): Move synonym to another accepted taxon ignores the selected new sec reference
Katja Luther
05:05 PM bug #9588 (Resolved): Specimen Tree View: Duplicate derivatives
Andreas Kohlbecker
04:33 PM bug #9588 (Closed): Specimen Tree View: Duplicate derivatives
auf http://campanula.e-taxonomy.net/cdm_dataportal/occurrence/93d7aec3-9a8b-40e3-b669-08802dac5160 werden die Pollend... Andreas Kohlbecker
05:04 PM Revision 0033520a (cdmlib): ref #9588 more reliable derivate tree dependant data aggregation - re...
Andreas Kohlbecker
05:04 PM Revision 2ef11647 (cdmlib): ref #9588 more reliable derivate tree dependant data aggregation
Andreas Kohlbecker
05:04 PM Revision c09986ee (cdmlib): doc
Andreas Kohlbecker
05:03 PM Revision e833a84d (cdm-dataportal): fixing wrong expectations in test
Andreas Kohlbecker
04:49 PM Revision adb576ac (taxeditor): adapt moveSynToAnotherAccepted handler and operation
Katja Luther
04:47 PM Revision 9ebe9b09 (cdmlib): secundum reference argument as uuid for moveSynonymToAnotherAccppted
Katja Luther
02:59 PM bug #9587: Unsaved changes are lost when trying to open a taxon a second time
this is fixed, please review. Katja Luther
02:48 PM bug #9587 (Resolved): Unsaved changes are lost when trying to open a taxon a second time
Applied in changeset commit:taxeditor|ea94be31fe128ab763b1f1e1ca48a799216f2b20. Katja Luther
01:08 PM bug #9587 (Closed): Unsaved changes are lost when trying to open a taxon a second time
mail ERS:
mir passiert es beim schnellen Editieren relativ häufig, dass ich ein bereits geöffnetes Taxon, das ich ...
Katja Luther
02:54 PM Revision 9db418d9 (taxeditor): fix #9587: reload the editor input when saving and skip if cancel
Katja Luther
02:49 PM Revision ea94be31 (taxeditor): fix #9587: reload the editor input when saving
Katja Luther

04/22/2021

09:34 PM task #9536 (Resolved): Remove old single source citation and microCitation columns for secundum a...
Applied in changeset commit:cdmlib|0ea3c839d8dd6592db2f3094a187b7ad2934a23c. Andreas Müller
09:34 PM Revision b9cb9ad3 (cdmlib): cleanup
Andreas Müller
09:34 PM Revision 0ea3c839 (cdmlib): add SchemaUpdater for 5.23.0 and fix #9536 (remove old columns and ta...
Andreas Müller
01:10 PM Revision 68fe0853 (cdm-dataportal): Merge branch 'support/5.22.1' into develop
Andreas Kohlbecker
01:03 PM Revision 39f296cc (cdm-dataportal): quick fix for layer renamed in geoserver country_earth -> cou...
Andreas Kohlbecker
12:23 PM Revision 3fbc78fa (cdm-dataportal): Merge branch 'support/5.22.1' into develop
Andreas Kohlbecker
12:22 PM Revision 07fc1e5a (cdm-dataportal): quick fix for layer renamed in geoserver country_earth -> cou...
Andreas Kohlbecker
12:18 PM Revision dec945ae (cdm-dataportal): fixing impropert test for not empty variable
Andreas Kohlbecker
11:50 AM Revision 29e450b8 (cdm-dataportal): fixing statement cascade for reporting of classification webs...
Andreas Kohlbecker
11:46 AM Revision ee0e7910 (cdm-dataportal): fixing bug in 'other classification' notification
Andreas Kohlbecker
11:45 AM Revision 3ba25a7c (cdm-dataportal): ref #9582 setting minimum php version in composer to 5.4
Andreas Kohlbecker
11:43 AM bug #9586 (Closed): OccurrenceServiceImpl.pageRootUnitsByAssociatedTaxon() wrong total count in p...
Andreas Kohlbecker

04/21/2021

02:44 PM Revision f5b6784e (cdmlib): ref #9586 fixing wrong total count in pager
Andreas Kohlbecker
02:42 PM bug #9586 (Closed): OccurrenceServiceImpl.pageRootUnitsByAssociatedTaxon() wrong total count in p...
The response object of OccurrenceServiceImpl.pageRootUnitsByAssociatedTaxon() erroneously reports the max page size a... Andreas Kohlbecker
02:01 PM Revision 03d8bdca (cdm-dataportal): ref #7599 reenabling map in specimen page
Andreas Kohlbecker
01:51 PM bug #9585 (New): Specimen page: Typedesignation "Syntype" misses name
see screenshot:
![](picture765-1.png)
Andreas Kohlbecker
11:33 AM feature request #9584 (New): specimen page: character data displayed in details section
In the specimen page character data is shown as link which points again to the same specimen. This is OK for the spec... Andreas Kohlbecker
09:57 AM feature request #9090: Implement external links for identifiable entities in TaxEditor
Put to fast for the implementation for references. Tag can be removed afterwards. Andreas Müller

04/20/2021

05:17 PM task #9268 (New): Check cdm for GC G1 humongous objects problem
Andreas Müller
05:14 PM feature request #9541: Improve referencing objects handling
Can you please review?
Open issues should be moved to new ticket.
Andreas Müller
05:12 PM feature request #9541: Improve referencing objects handling
open issues might be:
* improved formatting for all CdmBase classes (some formatting also seems to have regression...
Andreas Müller
05:05 PM feature request #9541: Improve referencing objects handling
What I did:
* moved all referencing objects formatting to cdmlib (ReferencingObjectFormatter) to allow server side...
Andreas Müller
04:16 PM Revision 5df3103b (cdmlib): cleanup
Andreas Müller
04:16 PM Revision bfb8b043 (cdmlib): fix NPE and handle not existing targetEntity
Andreas Müller
01:54 PM Revision a19b311d (cdm-dataportal): ref #9582 setting the git remote of the install package to gi...
Andreas Kohlbecker
01:53 PM Revision 96b196e0 (cdm-dataportal): ref #9582 setting the git remote of the install package to gi...
Andreas Kohlbecker
01:33 PM feature request #9114: Handle malformed URIs in user type
I only moved the original algorithm to the user type. The remaining issues are about the algorithm. As you implemente... Andreas Müller
12:43 PM feature request #9114: Handle malformed URIs in user type
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > In #9111#note-1 AK suggests to also en...
Katja Luther
01:06 PM bug #9469 (Resolved): Searching for a UUID in bulkeditor which does not belong to a record throws...
This should be fixed. Please review. Andreas Müller
01:03 PM bug #6469 (New): Types longer than 1 line should have an identation
revert to original status, caused by wrong ticket number in commit Andreas Müller
01:02 PM bug #6469 (Resolved): Types longer than 1 line should have an identation
Applied in changeset commit:taxeditor|567bec6355c7624e6fac32e6523453a8c3aceb2a. Andreas Müller
01:01 PM Revision 567bec63 (taxeditor): fix #6469 handle null value for bulk editor UUID search
Andreas Müller
01:01 PM Revision 3a1f4805 (taxeditor): cleanup
Andreas Müller
12:46 PM feature request #9090: Implement external links for identifiable entities in TaxEditor
For references this is urgent (and probably easy to implement).
Can we try to implement it in 5.23?
Andreas Müller
12:44 PM bug #9156: Searching for a taxon in the PolytomousKey perspective results in AssertionFailure
This to me seems fast to implement. The problem only occurs if no search has been run in Taxonomic Perspective before... Andreas Müller
12:15 PM feature request #7305: [Dicuss] searching for authorteam with more than three members is incomplete
This is related to the max number of authors handled in this milestone. Andreas Müller
12:04 PM bug #9028: Endless loop when opening the context menu of name facts
I can't reproduce this.
Katja, can you test if you can reproduce?
Walter, did you encounter the problem again?...
Andreas Müller
11:35 AM bug #9075: Exact values in descriptive matrix label provider should be ordered
I guess this is fast to implement? If yes, should we move it to 5.23? Andreas Müller
11:32 AM bug #8882: adapt search to handle protected or not protected titleCaches
To me this looks like a bug, not a feature request. Andreas Müller
11:31 AM bug #7699: NPE when searching for specimen in bulk editor
As this problem (see also duplicates) appears again and again from time to time I increase severity. Andreas Müller
11:18 AM bug #5907: Advanced Search for taxa: search results seem to be unordered
By the way, also the feature list in "by content category" is unordered but should be ordered. Andreas Müller
11:17 AM bug #5907: Advanced Search for taxa: search results seem to be unordered
Note: Also for Cichorium it is unordered: http://cichorieae.e-taxonomy.net/portal/cdm_dataportal/search/results/taxon... Andreas Müller
10:55 AM bug #5907 (New): Advanced Search for taxa: search results seem to be unordered
I tested on the cichorieae portal to reproduce the problem reported by Eckhard in comment 3. For a query searching "C... Andreas Kohlbecker
09:45 AM bug #5907 (Feedback): Advanced Search for taxa: search results seem to be unordered
Why do you think this is fixed? The order of the example page seems to be completely unordered. Andreas Müller
08:44 AM bug #5907 (Worksforme): Advanced Search for taxa: search results seem to be unordered
this is fixed already and should be closed.
@Eckhard: please can you double check?
The target version assignme...
Andreas Kohlbecker
08:40 AM feature request #8884 (Rejected): iiif manifest service: enrich metadata with information provide...
The digilib does not provide any media metadata, so this ticket is obsolete. Andreas Kohlbecker

04/19/2021

11:43 PM feature request #9537 (Feedback): Implement ratioToStructure in TaxEditor
A final issue is that removing the "ratio to" with titleCache not being protected does not set back the titleCache to... Andreas Müller
11:35 PM feature request #9114: Handle malformed URIs in user type
Katja Luther wrote:
> Andreas Müller wrote:
> > In #9111#note-1 AK suggests to also encode fragment and query parts...
Andreas Müller
02:40 PM feature request #9114 (Feedback): Handle malformed URIs in user type
Andreas Müller wrote:
> In #9111#note-1 AK suggests to also encode fragment and query parts. This has **not** been i...
Katja Luther
10:11 PM Revision a35dc362 (cdmlib): ref #6542 add warnAndDoNotOverrideIfExists to identifier import
Andreas Müller
10:11 PM Revision cc973e96 (cdmlib): ref #6542 update Identifier import to support value update and more l...
Andreas Müller
10:11 PM Revision 32bcc803 (cdmlib): cleanup
Andreas Müller
10:11 PM Revision 8f8ca25c (cdmlib): add updateIdentifier to IdentifierImport
Andreas Müller
10:09 PM Revision 69339d35 (cdmlib-apps): ref #9327 adapt BfnXmlImportAddtionalTerms import to new secundu...
Andreas Müller
10:08 PM Revision 8fbe8887 (cdmlib-apps): cleanup
Andreas Müller
05:48 PM feature request #8708 (Feedback): Sort taxa in distribution editor same as in navigator
This to me looks like a duplicate. Katja, can you check and link to the according ticket and close ticket as duplicat... Andreas Müller
04:32 PM feature request #6598 (Closed): Migrate commands and handlers
Andreas Müller wrote:
> target version is missing!
>
> Can we assess in current milestone what still needs to be ...
Katja Luther
04:09 PM Revision dcaf0220 (taxeditor): ref #8431: add rootnode to status label of cdmlight export
Katja Luther
04:05 PM bug #8431: missing status bar for cdm light export

>
> ---
>
> Also we need to find out how to switch of that progress is only shown in status bar but not in dia...
Katja Luther
03:55 PM Revision c6575e6f (cdm-dataportal): ref #9582 typos in README
Andreas Kohlbecker
03:42 PM Revision 547b7def (cdm-dataportal): ref #9582 apache 2 site config templates and updated README
Andreas Kohlbecker
02:35 PM feature request #9111 (Rejected): Handle Malformed URIs
this is handled in cdmlib now, therefore I close this ticket as rejected. Katja Luther
02:31 PM bug #9390 (Feedback): Remaining issues for set secundum dialog
we should discuss if we want to remove the line break for all dialogs, then I create a new ticket for adaption of dia... Katja Luther
01:20 PM Revision 66865d7c (cdm-dataportal): ref #9582 harmonizing taxon tree module name with other blocks
Andreas Kohlbecker
12:19 PM Revision 2b3987e1 (cdm-dataportal): ref #9582 new-site.sh more robust and with basic support for ...
Andreas Kohlbecker
12:17 PM Revision 305d26ff (cdm-dataportal): ref #9582 new-site.sh more robust and with basic support for ...
Andreas Kohlbecker
10:18 AM Revision add78389 (cdm-dataportal): ref #9582 zen main theme as composer project and depencency f...
Andreas Kohlbecker
 

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