Activity
From 04/06/2021 to 05/05/2021
05/05/2021
- 06:06 PM bug #9608 (New): UriUtils to use HTTP HEAD requests where possible
- where UriUtils need to use HTTP HEAD requests :
* getResourceLength()
* more ?
This can be performance criti... - 05:52 PM task #9607 (Closed): read image metadata from MediaInfoService if available
- The BGBM digilib image server is now complemented by an instance of the [MediaInfoService](https://github.com/cyberta...
- 05:43 PM Revision 96288777 (cdmlib): handle null values in TaxonNodeByRankAndNameComparator
- 03:15 PM Revision 9201d8aa (taxeditor): cleanup, fix field unit in details views
- 01:04 PM Revision e00fef3e (cdm-server): logging of remoting requests with duration per default
- 11:29 AM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
- Andreas Müller wrote:
> in DetailsViewE4.setInput() there is the following code:
>
> ~~~
> if (input instanceof... - 10:58 AM Revision e21cf4b8 (taxeditor): ref #9603: adapt order of named areas in distribution editor
- 10:57 AM bug #9603 (Resolved): Sorting in status drop down of distribution editor
- please review.
- 10:40 AM feature request #6718 (Feedback): Constistent TypeDesignation representation creation
- there two additional ticket one in cdmlib and one in cdmlib-remote (https://dev.e-taxonomy.eu/redmine/projects/edit/i...
- 09:54 AM Revision 8cec01d8 (taxeditor): fix #9605: disable details for termtree in character editor
- 09:53 AM bug #9605: Disable Details View for structure and property trees in character editor
- please review
- 09:52 AM bug #9605 (Resolved): Disable Details View for structure and property trees in character editor
- Applied in changeset commit:taxeditor|8cec01d85742928dc10fb695d2f778f627c8414a.
- 09:24 AM Revision 99e6c066 (cdmlib): fix StringUtils dependency
- 08:53 AM Revision 10cae443 (cdmlib): remove warnings
- 08:38 AM Revision d27905b0 (cdmlib): cleanup
- 08:36 AM Revision 1d2247b4 (cdmlib): cleanup
05/04/2021
- 11:49 PM Revision 69b464fd (cdmlib): cleanup
- 11:47 PM Revision 03a6bc68 (cdmlib): ref #9590 similary fix clone for TaxonName/NomenclaturalSource
- 11:39 PM Revision d4149686 (cdmlib): ref #9590 fix swap test by fixing SecundumSource clone method and remove incorrect Cascade.Delete handling in swap method
- 10:43 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- Ahh, correct, there were also the other methods. I corrected the 3rd one now so everything should be correct now. Can...
- 04:00 PM bug #9606 (Resolved): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- please review
- 03:58 PM bug #9606 (In Progress): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- 03:58 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- as said there definitely an NPE in this code line from above
~~~
taxonBase.isInstanceOf(Taxon.class)){
~~~~
T... - 03:55 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- Andreas Kohlbecker wrote:
> in these lines of countByTitle() it is obvious:
>
> ~~~java
> TaxonBase<?> taxonBase... - 03:52 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- But it is not forbidden to pass a null value, and if you follow the method that is called, there you have null values...
- 01:59 PM bug #9606: NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- in these lines of countByTitle() it is obvious:
~~~java
TaxonBase<?> taxonBase = taxonService.load(occurrenceConf... - 01:55 PM bug #9606 (Feedback): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
- Can you give a bit more inside. Any stacktrace available for the NPE?
What exactly is about taxon, taxonbase and nam... - 01:20 PM bug #9606 (Closed): NullPointerExceptions (NPEs) in OccurrenceServiceImpl
see taxon, taxonBase and name in these methods
* OccurrenceServiceImpl.countByTitle(IIdentifiableEntityServiceCo...- 10:42 PM Revision 5f196d28 (cdmlib): ref #9606 fixing also the 3rd potential NPE
- 10:05 PM Revision 8ae625ea (cdmlib): cleanup
- 10:03 PM Revision 1a4b9c63 (cdmlib): ref #9603 adapt TypeDesignationStatusComparator to new semantic of OrderedTermComparator
- 04:13 PM Revision 5939425d (cdm-dataportal): ref #9599 commenting looging
- 04:09 PM Revision 97fc0f95 (cdmlib): ref #9606 fix another potential NPE
- 03:55 PM Revision d9a9f2b1 (cdmlib): ref #9606 fix potential NPE
- 03:27 PM task #9599 (Feedback): remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
- The tagged titles of TaxonName and TaxonBase do not include the nomenclatural reference
In the portal display of t... - 03:00 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- Ok, for model updates it may be problematic. I rather thought on all other taks, like data cleaning and so on, when I...
- 01:36 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- Andreas Kohlbecker wrote:
> wouldn't it be anyway much better to do such cleanup tasks in general via the DAO layer?... - 01:24 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- wouldn't it be anyway much better to do such cleanup tasks in general via the DAO layer?
- 02:33 PM Revision 96ca9010 (cdmlib): ref #9603: fix natural sort order
- 02:22 PM bug #9603 (In Progress): Sorting in status drop down of distribution editor
- 02:21 PM bug #9603 (Resolved): Sorting in status drop down of distribution editor
- 02:20 PM Revision 641175e9 (taxeditor): ref #9603: adapt to new termOrder values
- 12:56 PM bug #9185: DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404 HTTP response
- review: scan logs
- 12:56 PM bug #9185 (Resolved): DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404 HTTP response
- Applied in changeset commit:cdmlib|679982a065408133f36b72f39d2f70d4fe2856fa.
- 11:41 AM bug #9185: DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404 HTTP response
- This error makes cdm-server log hardly readable, hence, it should be solved rather soon.
- 12:56 PM Revision 679982a0 (cdmlib): fix #9185 catching and logging NPE and NestedSevletExecptions properly at appropriate levels
- 12:56 PM Revision 039f88e8 (cdmlib): clean up
- 12:38 PM Revision 19732dea (cdmlib): ref #9603: add symbol and symbol2 to TermOrder enum
- 12:21 PM Revision 0aba8158 (taxeditor): add symbol1 and symbol2 to sort order of drop down in distribution editor
- 12:18 PM Revision 2d805720 (cdmlib): fix handling of references for misapplied names
- 12:18 PM Revision 316607fa (cdmlib): ref #9603: add new Comparator for term.symbol und term.symbol2
- 10:03 AM bug #9605 (Closed): Disable Details View for structure and property trees in character editor
- Changes of property tree or structure tree are not persisted in character editor therefore it should not be possible ...
- 10:02 AM Revision fb6d642f (taxeditor): cleanup
- 10:02 AM Revision 8aaabf50 (taxeditor): ref #9595 , ref #5575 use DnaSampleCacheStrategy in DerivateLabelProvider
- 10:02 AM Revision 04443665 (taxeditor): cleanup
05/03/2021
- 11:34 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- If the condition from #note-9 is correct the query looks ok except for the fact that it does not include AUD tables w...
- 02:58 PM task #9291 (Feedback): Clear all unnecesary TypeDesignation.citation entities and citationDetails
- @Andreas M.: Could you please double check this sql script?
~~~sql
CREATE TEMPORARY TABLE temp_ds_cleanup(
... - 02:33 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- All type designations that do not have a state like below must not have a designationSource:
~~~
// NameTypeDesig... - 02:10 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- select statement simplified and updated to current model version
~~~sql
SELECT
tn.uuid as TaxonName_uuid, tn... - 11:17 PM Revision e657f722 (cdmlib): cleanup
- 11:16 PM Revision 9b463b7f (cdmlib): ref #9604 fix 2 minor issues in tests
- 10:50 PM task #9604 (Resolved): Split bibliographic reference cache strategy and nomenclatural formatter + orginal source formatter
- Applied in changeset commit:cdmlib|dd9ab0c7f9f0c454126a7958f5d1e4f8e70c072a.
- 10:35 PM task #9604 (Closed): Split bibliographic reference cache strategy and nomenclatural formatter + orginal source formatter
- 10:50 PM Revision dd9ab0c7 (cdmlib): fix #9604 bibliographic ReferenceDefaultCacheStrategy and NomenclaturalSourceFormatter splittet
- 10:50 PM Revision 3d77af6c (cdmlib): remove duplicated methods in TaxonNameDefaultCacheStrategy
- 06:06 PM bug #9603 (Closed): Sorting in status drop down of distribution editor
- mail AM:
Bei der Sortierung nach „natural“ scheint mir was falsch zu laufen. Wenn ich das auswähle kommt „endemic“... - 05:58 PM bug #9602 (Closed): cdm-server must not start instances with severe db connection problems
- 05:31 PM bug #9602 (Closed): cdm-server must not start instances with severe db connection problems
- The cdm-server must not start instances with db connection problems.
Currently such instances show a unclear erro... - 05:36 PM Revision 534e39de (cdmlib): ref #9602 more clear execption handling in case of jndi data source problems
- 05:32 PM Revision 4269efd3 (cdm-server): ref #9602 preventing instances from starting up in case of db connection problems
- 04:00 PM Revision 99186f90 (cdmlib): ref #9590: set test to ignore
- 03:43 PM Revision 4634862e (cdmlib): ref #9590: add swapSynonymAndAcceptedTaxonNewUuid and test -continue
- 03:43 PM Revision f9d8be39 (cdmlib): ref #9590: add swapSynonymAndAcceptedTaxonNewUuid and test
- 03:26 PM Revision af68bbe0 (cdm-dataportal): ref #9599 better error reporting
- 02:58 PM bug #9601 (Closed): Set secundum for subTree does not work for misapplied names
- Hallo,
anscheinend wird die “err. sec.“ Referenz nicht ersetzt, wenn man den Tree-Replace macht (Fall: Cuba – Orchid... - 02:50 PM bug #9600 (In Progress): Delete of taxon with unselected name delete returns warning
- The name deletion was explicitly not selected but there are several warnings:
 - 12:13 PM Revision 603725aa (cdm-dataportal): ref #9599 showing error in case of reference/{uuid}/nomenclaturalCitation usage
- 12:12 PM task #9599 (In Progress): remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
- 12:03 PM Revision 6aad03df (cdmlib): RegistrationTest test clarified
- 11:39 AM Revision 9bcb6887 (taxeditor): adapt NamedAreaSearchField -> TermSearchField in editor
- 10:26 AM bug #9598 (Feedback): Deduplicate NamedAreas with >1 representations and include label in search
- Katja Luther wrote:
> It should be adapted for the list of vocabularies, too.
>
> 
>
> T... - 09:40 AM bug #9598: Deduplicate NamedAreas with >1 representations and include label in search
- It should be adapted for the list of vocabularies, too.
The used method is listByTermType() - 10:25 AM Revision 62b306e0 (cdmlib): ref #9598: adapt termvocabulary list to avoid duplicates
- 09:28 AM Revision 21be58d8 (cdmlib): rename DefaultReferenceCacheStrategy to ReferenceDefaultCacheStrategy
- 09:16 AM Revision b81c8fe7 (cdmlib): rename NamedAreaSearchField to TermSearchField
- 09:07 AM Revision a5516896 (cdmlib): cleanup
- 08:45 AM Revision d1169fcf (cdmlib): add country vocabulary uuid to NamedArea
05/02/2021
- 11:54 PM feature request #9539 (In Progress): Implement availableFor for ExtensionType, MarkerType, AnnotationType and IdentifierType
- 11:54 PM bug #9598: Deduplicate NamedAreas with >1 representations and include label in search
- Please review
... and please remove commented code in the respective method if not necessary anymore. Please also ... - 11:27 PM Revision b9314362 (cdmlib): fix #9598 add search by label and tests
- 10:46 PM Revision 0ff7ce5c (cdmlib): fix #9598 add deduplication to DefinedTermDaoImpl.listNamedAreaByAbbrev(...) rename listNamedArea to list(clazz, ....) to make the method more generic
- 10:44 PM Revision 715f62d1 (cdmlib): cleanup
05/01/2021
- 09:55 PM bug #9598 (Resolved): Deduplicate NamedAreas with >1 representations and include label in search
- Applied in changeset commit:cdmlib|587733cec3aafb1614ddb925bebb1aa4f212f5ff.
- 09:54 PM bug #9598 (Closed): Deduplicate NamedAreas with >1 representations and include label in search
- 09:55 PM Revision 587733ce (cdmlib): fix #9598 add deduplication to DefinedTermDaoImpl.listNamedArea(...)
- 09:52 PM Revision c32d6e53 (cdmlib): cleanup
- 08:34 PM Revision 7b376b96 (cdmlib): minor
- 08:34 PM Revision 321f715b (cdmlib): fix potential NPE in DescriptionAggregation if TaxonNode sortindex is corrupted
- 08:31 PM Revision 2d147336 (cdmlib): ref #9327 adapt aggregation tests for secundum original source
- 08:26 PM Revision 2bbd9c25 (cdmlib): ref #9539 implement base classes for available for and some first methods
- 08:13 PM Revision 4cef5d18 (cdmlib): cleanup
04/30/2021
- 10:55 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > This to me seems to be fixed. Katja can you check, and if true ad... - 10:53 PM bug #9302: Phycobank related issues for TypeDesignation formatting
- Check how far this is still open.
Closed issues where implemented in 5.18 or prior. - 10:49 PM bug #9398: ObjectNotFoundException when removing a synonym that is used as NameInSource
- This still seems to be an open issue I guess? And it should have high priority as ObjectNotFoundException should be a...
- 10:37 PM feature request #5575 (Feedback): DNA Sample requires CacheStrategy
- The initialization of the cache strategy does not seem to fully work yet. See comment in #9595#note-2
- 10:26 PM feature request #5573: Cache Strategy for Media Specimen required
- I think this is fully implemented now. If users want it differently they may tell us by time and we can adapt the cod...
- 08:27 PM feature request #5573: Cache Strategy for Media Specimen required
- >An iconotyp may have completely different requirements than a scan that is derived from a preserved specimen.
Med... - 10:01 PM feature request #7612 (Duplicate): CacheStrategy for MediaSpecimens
- This focus of this ticket is not fully clear. Is it only about MediaSpecimen or about MediaSpecimen used as types.
... - 09:49 PM task #9595 (Resolved): Use DerivedUnit or DnaSample for DnaSampleGeneralDetailElement
- This is implemented. However it does not work similar to MediaSpecimen as DnaSample somehow always gets the DerivedUn...
- 07:06 AM task #9595 (Closed): Use DerivedUnit or DnaSample for DnaSampleGeneralDetailElement
- same reason as for #9594
This is also a step forward to not use DerivedUnitFacade in SpecimenTreeEditor details vi... - 09:35 PM Revision faec6529 (cdmlib): cleanup
- 09:35 PM Revision b5c91e8c (cdmlib): ref #9597 handle MediaSpecimen and its sources correctly in TypeDesignationSet formatting (cont.)
- 09:23 PM feature request #9597: Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting
- I adapted the formatting of MediaSpecimen type designations sources to the general source handling. This also allows ...
- 09:14 PM feature request #9597 (Resolved): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting
- Applied in changeset commit:cdmlib|11e24052308c971ec1959f5e8219ff1962a61a7c.
- 08:04 PM feature request #9597 (Closed): Improve formatting of MediaSpecimen in TypeDesignationWorkingSet formatting
- copied from #9279
Sources for MediaSpecimen should be formatted in the same way as elsewhere
Example:
* Old no... - 09:14 PM Revision 11e24052 (cdmlib): fix #9597 handle MediaSpecimen and its sources correctly in TypeDesignationSet formatting
- 08:24 PM feature request #6718: Constistent TypeDesignation representation creation
- As we do have TypeDesignationSetManager in cdmlib now and all open tickets are dataportal related I guess we could ei...
- 08:21 PM feature request #5950 (Duplicate): Add duplicate method for type designations
- I guess this duplicates #6413
- 08:05 PM feature request #9279 (Closed): Improve type designation formatting and TypeDesignationSetManager
- move open issues to new tickets #9596 and #9597 and close this ticket.
- 08:01 PM feature request #9596 (New): Open issues for TypeDesignationWorkingSet
- copied from #9279
* replace TypedEntityReference by real entities as they are not necessary or use them only where... - 07:52 PM Revision 9ff02ad7 (cdmlib): cleanup
- 02:39 PM Revision a9e9e5a9 (cdm-dataportal): using again const instead of define()
- 09:26 AM Revision e651eaf3 (cdmlib): ref #7612, ref #5573, ref #5575 use mostSignificantIdentifier instead of accession number only
- 09:25 AM Revision bad2d5b5 (cdmlib): ref #9595 shortcut to load single identifier
- 08:56 AM Revision 4899e12f (cdmlib): ref #9595 load sample designation preferred to other identifiers for DNA Sample
- 08:55 AM Revision 16419c4d (cdmlib): ref #9595 load empty DnaSamples with DnaSampleDefaultCacheStrategy
- 07:42 AM Revision f3876100 (cdmlib): cleanup
- 07:42 AM Revision a1dce9c6 (cdmlib): ref #9595 add SampleDesignation uuid to DefinedTerm
- 07:17 AM Revision 3b33d596 (cdmlib): minor
- 07:17 AM Revision 05bdc44f (cdmlib): ref #9595 move xxxPreferredDetermination from facade to SpecimenOrObservationBase
- 07:15 AM Revision 957e3207 (cdmlib): ref #5573, ref #7612 some doc
04/29/2021
- 11:16 PM Revision 97e308a9 (taxeditor): cleanup and remove generics from Identifier class
- 11:06 PM Revision d4557c24 (cdmlib): cleanup
- 11:06 PM Revision 0a140219 (cdmlib): remove generics from Identifier class
- 09:57 PM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
- in DetailsViewE4.setInput() there is the following code:
~~~
if (input instanceof MediaSpecimen && !(this.active... - 04:34 PM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
- Note: the implementation in specimen list editor leads to a message that the specimen can not be edited in details vi...
- 04:26 PM task #9594: Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
- we could do something similar for DnaSample
- 04:25 PM task #9594 (Resolved): Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
- please review
- 04:19 PM task #9594 (Closed): Use MediaSpecimen as input for MediaSpecimenGeneralDetailElement
- It does not make sense to use DerivedUnitFacade here as the specific type is known. Also it the facade creates proble...
- 09:48 PM feature request #4363 (Closed): Show more informative message for unsupported specimen structures in specimen bulk editor
- The exception handling seems to be correct now and this ticket can be closed.
- 03:56 PM feature request #4363: Show more informative message for unsupported specimen structures in specimen bulk editor
- See also comment in DetailsViewerE4.showParts where a DerivedUnitFacade is created only to get the error message.
- 05:10 PM Revision 3a78b28a (taxeditor): cleanup
- 05:04 PM bug #5581 (Closed): Specimen title cache does not show up correctly after editing
- For MediaSpecimen and DnaSample a cache strategy exists now. So I close this ticket.
- 05:00 PM Revision 1cd6de7e (taxeditor): ref #9594 , ref #5573, ref #7612 use MediaSpecimenCacheStrategy in DerivateLabelProvider
- 04:50 PM Revision 0d672864 (taxeditor): ref #9594 use MediaSpecimen as base unit for MediaSpecimenGeneralDetailElement (cont.)
- 04:29 PM feature request #5573: Cache Strategy for Media Specimen required
- A first version is implemented now. This cache strategy differs from default derived unit cache strategies in the way...
- 04:22 PM feature request #5573: Cache Strategy for Media Specimen required
- To use the new cache strategy the editor needs to be refactored a bit: #9594
- 04:25 PM Revision d4b9ef81 (taxeditor): ref #9594 use MediaSpecimen as base unit for MediaSpecimenGeneralDetailElement
- 04:06 PM Revision a0fcd061 (taxeditor): cleanup
- 03:42 PM feature request #9575 (Resolved): Allow flag to include authors in taxon and name search in TaxEditor
- this is fixed, please review.
- 03:32 PM bug #9593 (Closed): Changing and saving a PolytomousKey throws ConcurrentModificationException
- Andreas Müller wrote:
> Probably this is ok, though I wonder why the root node is not doing the same job as it is me... - 01:12 PM bug #9593 (Feedback): Changing and saving a PolytomousKey throws ConcurrentModificationException
- Probably this is ok, though I wonder why the root node is not doing the same job as it is merge-cascaded. But as the ...
- 03:31 PM Revision 78dff9c8 (cdmlib): ref #9593: revert some changes in taxonDao not belonging to this ticket
- 02:31 PM bug #5885 (Worksforme): classification.rootNode has a lot of NULL children
- Andreas Müller wrote:
> Katja, can you please have a look if this is still an open issue and if yes if it is related... - 01:17 PM bug #5885: classification.rootNode has a lot of NULL children
- Katja, can you please have a look if this is still an open issue and if yes if it is related to the known hibernate N...
- 01:24 PM Revision cbc54d4e (taxeditor): cleanup
- 12:51 PM task #6981: Migrate to Java 11
- we should consider migrating to Java 11 directly, maybe to java 17?
Java 11 is the latest LTS release with Premier... - 12:29 PM Revision 7fa35f9f (cdm-dataportal): bumping minimin php version to 5.6
- 12:25 PM Revision 8896122f (cdm-dataportal): Merge branch 'support/5.22.1' into develop
- 12:24 PM feature request #9329 (Closed): Implement sec reference as original source in dataportal
- 11:50 AM feature request #9329 (In Progress): Implement sec reference as original source in dataportal
- 12:23 PM Revision 32692cf9 (cdm-dataportal): using again const instead of define()
- 12:18 PM Revision 4c380cc0 (cdm-dataportal): ref #9329 adapting data portal to ->sec reference being now ->secSource->citation
- 12:01 PM Revision 44b0f5cd (taxeditor): Merge branch 'hotfix/5.22.1'
- 11:59 AM Revision d1596444 (cdmlib): ref #9329 adapting json configuration to new sec reference structure and fields
- 11:49 AM Revision cf8e9d9f (cdm-dataportal): ref #9329 adapting data portal to ->sec reference being now ->secSource->citation
- 11:18 AM Revision 7653306e (taxeditor): fix exception if no secundum source is available
- 11:15 AM Revision de21609a (cdm-dataportal): ref #9591 adapring test to modified media specimens short title
- 10:55 AM Revision 64498bd0 (taxeditor): Updated version in pom / project files to taxeditor version : 5.22.1 and cdmlib version : 5.22.0
- 08:43 AM Revision 21198df4 (cdmlib): ref #9575: test adaption
- 08:15 AM Revision 2732777a (cdmlib): ref #9575: revert test adaption
- 08:09 AM Revision ae8c38b6 (taxeditor): ref #9575: add possibility to search with authors - missing l10n files
04/28/2021
- 08:28 PM Revision f70a9ae2 (cdmlib): cleanup
- 08:28 PM Revision c3afc00d (cdmlib): ref #9575 adapt tests for editor search with authors
- 07:07 PM Revision 9aa30fc8 (cdmlib): ref #1602, ref #5573, ref #7612 Include artist in MediaDefaultCacheStrategy
- 07:01 PM Revision c4b19e61 (cdmlib): cleanup
- 05:06 PM Revision d0cd78c9 (cdmlib): ref #7612, ref #5573 adapt MediaSpecimenDefaultCacheStrategy to show file name only if no other information exists
- 05:06 PM Revision 439789dd (cdmlib): cleanup
- 04:06 PM Revision 6e8f0c6d (cdmlib): ref #9591 defined order of item in FieldUnitDTO.TreeLabels
- 01:53 PM Revision 6b8fd990 (taxeditor): ref #9575: add possibility to search with authors
- 01:50 PM Revision 5e985bbc (cdmlib): ref #9575: adapt findTaxaAndNames for doAuthors, add test case
- 12:58 PM Revision 4ce176cc (cdmlib): ref #9593: add polytomouskey handling in PostMergeEntityListener to avoid NULL values - avoid NPE
- 12:04 PM bug #9593 (Resolved): Changing and saving a PolytomousKey throws ConcurrentModificationException
- Added the handling of polytomous key in removeNullFromCollection because the editor saves the whole key.
- 11:46 AM bug #9593: Changing and saving a PolytomousKey throws ConcurrentModificationException
- Andreas Müller wrote:
> This only seems to happen if the sortindex of the PolytomousKey nodes is not up-to-date. Aft... - 12:02 PM Revision 98ac7b26 (cdmlib): ref #9593: add polytomouskey handling in PostMergeEntityListener to avoid NULL values
04/27/2021
- 04:50 PM Revision 4e150e0c (cdm-dataportal): ref #9591 adapting tests to new specimen short title - 2
- 04:41 PM bug #9593: Changing and saving a PolytomousKey throws ConcurrentModificationException
- This only seems to happen if the sortindex of the PolytomousKey nodes is not up-to-date. After calling refresh on the...
- 03:43 PM bug #9593 (Closed): Changing and saving a PolytomousKey throws ConcurrentModificationException
- 03:32 PM Revision b19714a3 (cdmlib): ref #9590: fix test
- 03:14 PM Revision fbb8b34c (taxeditor): cleanup
- 03:06 PM Revision 58832d5a (cdmlib): ref #9590: fix test
- 02:54 PM feature request #9592 (New): SpecimenOrObservationBaseDTO: field for hidden derivatives
- `OccurrenceServiceImpl.findRootUnitDTOs(DerivedUnitDTO derivedUnitDTO, ..)` hides derivatives of originals which are ...
- 02:54 PM bug #9590 (Resolved): ObjectDeletedException when swap synonym and accepted taxon
- The method is adapted so that the taxon and the synonym keep the same, only the names are swaped, this also matches t...
- 09:17 AM bug #9590 (Closed): ObjectDeletedException when swap synonym and accepted taxon
- mail Nadja Korotkova:
das passierte eben beim Vertauschen von Synonym und accepted
Viele Grüße
Nadja
~~~ ... - 02:47 PM Revision 8d1b97de (cdmlib): ref #9590: adapt business test
- 02:39 PM feature request #9591 (Closed): Specimen Tree View: concise label for derivatives
- 12:15 PM feature request #9591 (Closed): Specimen Tree View: concise label for derivatives
- The title cache of derivatives includes the field unit information. In the derivaation tree this is redundant informa...
- 02:38 PM Revision f6466bef (cdm-dataportal): ref #9591 adapting tests to new specimen short title
- 02:36 PM Revision 6d55830a (cdm-dataportal): ref #9591 adapting portal to renamed dto field specimenIdentifier -> specimenShortTitle
- 02:33 PM Revision 9d356033 (cdmlib): ref #9591 reaming dto field specimenIdentifier -> shortTitle & adding media title to media specimens
- 01:14 PM Revision d5dd8738 (cdmlib): ref #9590: add synonym with secundum reference to swap test
- 01:11 PM Revision 1869f60c (cdmlib): ref #9590: fix, only swap the names swapSynonymAndAccepted
- 01:10 PM Revision 99b383ea (taxeditor): avoid widgetIsDisposed exception
- 12:17 PM Revision 5f3a4743 (cdm-dataportal): ref #9591 using dto.specimenIdentifier as short label for derivatives in the tree view
- 11:40 AM bug #9588: Specimen Tree View: Duplicate derivatives
- problem solved, please review
- 11:39 AM Revision 0a9f8e05 (cdm-dataportal): ref #9588 fixing wrong expectations in test
- 11:38 AM Revision f3131c7a (cdm-dataportal): fixing wrong expectations in test
- 10:35 AM Revision 96b0a8c6 (taxeditor): fix exception if no secundum source is available
- 09:19 AM Revision 38ef7902 (cdmlib): ref #9590: fix ObjectDeletedException in swapSynonymAndAccepted
04/26/2021
- 09:32 PM Revision 367cb47d (cdmlib): ref #9589: adapt test
- 05:12 PM bug #9589 (Resolved): Move synonym to another accepted taxon ignores the selected new sec reference
- this should be fixed, please review
- 05:09 PM bug #9589 (Closed): Move synonym to another accepted taxon ignores the selected new sec reference
- 05:05 PM bug #9588 (Resolved): Specimen Tree View: Duplicate derivatives
- 04:33 PM bug #9588 (Closed): Specimen Tree View: Duplicate derivatives
- auf http://campanula.e-taxonomy.net/cdm_dataportal/occurrence/93d7aec3-9a8b-40e3-b669-08802dac5160 werden die Pollend...
- 05:04 PM Revision c09986ee (cdmlib): doc
- 05:04 PM Revision 0033520a (cdmlib): ref #9588 more reliable derivate tree dependant data aggregation - renaming field
- 05:04 PM Revision 2ef11647 (cdmlib): ref #9588 more reliable derivate tree dependant data aggregation
- 05:03 PM Revision e833a84d (cdm-dataportal): fixing wrong expectations in test
- 04:49 PM Revision adb576ac (taxeditor): adapt moveSynToAnotherAccepted handler and operation
- 04:47 PM Revision 9ebe9b09 (cdmlib): secundum reference argument as uuid for moveSynonymToAnotherAccppted
- 02:59 PM bug #9587: Unsaved changes are lost when trying to open a taxon a second time
- this is fixed, please review.
- 02:48 PM bug #9587 (Resolved): Unsaved changes are lost when trying to open a taxon a second time
- Applied in changeset commit:taxeditor|ea94be31fe128ab763b1f1e1ca48a799216f2b20.
- 01:08 PM bug #9587 (Closed): Unsaved changes are lost when trying to open a taxon a second time
- mail ERS:
mir passiert es beim schnellen Editieren relativ häufig, dass ich ein bereits geöffnetes Taxon, das ich ... - 02:54 PM Revision 9db418d9 (taxeditor): fix #9587: reload the editor input when saving and skip if cancel
- 02:49 PM Revision ea94be31 (taxeditor): fix #9587: reload the editor input when saving
04/22/2021
- 09:34 PM task #9536 (Resolved): Remove old single source citation and microCitation columns for secundum and DescriptionElementBase_OriginalSourceBase and TaxonName_NomenclaturalStatus
- Applied in changeset commit:cdmlib|0ea3c839d8dd6592db2f3094a187b7ad2934a23c.
- 09:34 PM Revision b9cb9ad3 (cdmlib): cleanup
- 09:34 PM Revision 0ea3c839 (cdmlib): add SchemaUpdater for 5.23.0 and fix #9536 (remove old columns and tables)
- 01:10 PM Revision 68fe0853 (cdm-dataportal): Merge branch 'support/5.22.1' into develop
- 01:03 PM Revision 39f296cc (cdm-dataportal): quick fix for layer renamed in geoserver country_earth -> country_earth_no_labels - removed
- 12:23 PM Revision 3fbc78fa (cdm-dataportal): Merge branch 'support/5.22.1' into develop
- 12:22 PM Revision 07fc1e5a (cdm-dataportal): quick fix for layer renamed in geoserver country_earth -> country_earth_no_labels
- 12:18 PM Revision dec945ae (cdm-dataportal): fixing impropert test for not empty variable
- 11:50 AM Revision 29e450b8 (cdm-dataportal): fixing statement cascade for reporting of classification webservice problems
- 11:46 AM Revision ee0e7910 (cdm-dataportal): fixing bug in 'other classification' notification
- 11:45 AM Revision 3ba25a7c (cdm-dataportal): ref #9582 setting minimum php version in composer to 5.4
- 11:43 AM bug #9586 (Closed): OccurrenceServiceImpl.pageRootUnitsByAssociatedTaxon() wrong total count in pager
04/21/2021
- 02:44 PM Revision f5b6784e (cdmlib): ref #9586 fixing wrong total count in pager
- 02:42 PM bug #9586 (Closed): OccurrenceServiceImpl.pageRootUnitsByAssociatedTaxon() wrong total count in pager
- The response object of OccurrenceServiceImpl.pageRootUnitsByAssociatedTaxon() erroneously reports the max page size a...
- 02:01 PM Revision 03d8bdca (cdm-dataportal): ref #7599 reenabling map in specimen page
- 01:51 PM bug #9585 (New): Specimen page: Typedesignation "Syntype" misses name
- see screenshot:
 - 11:33 AM feature request #9584 (Closed): specimen page: character data displayed in details section
- In the specimen page character data is shown as link which points again to the same specimen. This is OK for the spec...
- 09:57 AM feature request #9090: Implement external links for identifiable entities in TaxEditor
- Put to fast for the implementation for references. Tag can be removed afterwards.
04/20/2021
- 05:17 PM task #9268 (New): Check cdm for GC G1 humongous objects problem
- 05:14 PM feature request #9541: Improve referencing objects handling
- Can you please review?
Open issues should be moved to new ticket. - 05:12 PM feature request #9541: Improve referencing objects handling
- open issues might be:
* improved formatting for all CdmBase classes (some formatting also seems to have regression... - 05:05 PM feature request #9541: Improve referencing objects handling
- What I did:
* moved all referencing objects formatting to cdmlib (ReferencingObjectFormatter) to allow server side... - 04:16 PM Revision 5df3103b (cdmlib): cleanup
- 04:16 PM Revision bfb8b043 (cdmlib): fix NPE and handle not existing targetEntity
- 01:54 PM Revision a19b311d (cdm-dataportal): ref #9582 setting the git remote of the install package to github
- 01:53 PM Revision 96b196e0 (cdm-dataportal): ref #9582 setting the git remote of the install package to github
- 01:33 PM feature request #9114: Handle malformed URIs in user type
- I only moved the original algorithm to the user type. The remaining issues are about the algorithm. As you implemente...
- 12:43 PM feature request #9114: Handle malformed URIs in user type
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > In #9111#note-1 AK suggests to also en... - 01:06 PM bug #9469 (Resolved): Searching for a UUID in bulkeditor which does not belong to a record throws an exception
- This should be fixed. Please review.
- 01:03 PM bug #6469 (New): Types longer than 1 line should have an indentation
- revert to original status, caused by wrong ticket number in commit
- 01:02 PM bug #6469 (Resolved): Types longer than 1 line should have an indentation
- Applied in changeset commit:taxeditor|567bec6355c7624e6fac32e6523453a8c3aceb2a.
- 01:01 PM Revision 567bec63 (taxeditor): fix #6469 handle null value for bulk editor UUID search
- 01:01 PM Revision 3a1f4805 (taxeditor): cleanup
- 12:46 PM feature request #9090: Implement external links for identifiable entities in TaxEditor
- For references this is urgent (and probably easy to implement).
Can we try to implement it in 5.23? - 12:44 PM bug #9156: Searching for a taxon in the PolytomousKey perspective results in AssertionFailure
- This to me seems fast to implement. The problem only occurs if no search has been run in Taxonomic Perspective before...
- 12:15 PM feature request #7305: [Dicuss] searching for authorteam with more than three members is incomplete
- This is related to the max number of authors handled in this milestone.
- 12:04 PM bug #9028: Endless loop when opening the context menu of name facts
- I can't reproduce this.
Katja, can you test if you can reproduce?
Walter, did you encounter the problem again?... - 11:35 AM bug #9075: Exact values in descriptive matrix label provider should be ordered
- I guess this is fast to implement? If yes, should we move it to 5.23?
- 11:32 AM bug #8882: adapt search to handle protected or not protected titleCaches
- To me this looks like a bug, not a feature request.
- 11:31 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- As this problem (see also duplicates) appears again and again from time to time I increase severity.
- 11:18 AM bug #5907: Advanced Search for taxa: search results seem to be unordered
- By the way, also the feature list in "by content category" is unordered but should be ordered.
- 11:17 AM bug #5907: Advanced Search for taxa: search results seem to be unordered
- Note: Also for Cichorium it is unordered: http://cichorieae.e-taxonomy.net/portal/cdm_dataportal/search/results/taxon...
- 10:55 AM bug #5907 (New): Advanced Search for taxa: search results seem to be unordered
- I tested on the cichorieae portal to reproduce the problem reported by Eckhard in comment 3. For a query searching "C...
- 09:45 AM bug #5907 (Feedback): Advanced Search for taxa: search results seem to be unordered
- Why do you think this is fixed? The order of the example page seems to be completely unordered.
- 08:44 AM bug #5907 (Worksforme): Advanced Search for taxa: search results seem to be unordered
- this is fixed already and should be closed.
@Eckhard: please can you double check?
The target version assignme... - 08:40 AM feature request #8884 (Rejected): iiif manifest service: enrich metadata with information provided by other iiif image servers
- The digilib does not provide any media metadata, so this ticket is obsolete.
04/19/2021
- 11:43 PM feature request #9537 (Feedback): Implement ratioToStructure in TaxEditor
- A final issue is that removing the "ratio to" with titleCache not being protected does not set back the titleCache to...
- 11:35 PM feature request #9114: Handle malformed URIs in user type
- Katja Luther wrote:
> Andreas Müller wrote:
> > In #9111#note-1 AK suggests to also encode fragment and query parts... - 02:40 PM feature request #9114 (Feedback): Handle malformed URIs in user type
- Andreas Müller wrote:
> In #9111#note-1 AK suggests to also encode fragment and query parts. This has **not** been i... - 10:11 PM Revision a35dc362 (cdmlib): ref #6542 add warnAndDoNotOverrideIfExists to identifier import
- 10:11 PM Revision cc973e96 (cdmlib): ref #6542 update Identifier import to support value update and more logging
- 10:11 PM Revision 32bcc803 (cdmlib): cleanup
- 10:11 PM Revision 8f8ca25c (cdmlib): add updateIdentifier to IdentifierImport
- 10:09 PM Revision 69339d35 (cdmlib-apps): ref #9327 adapt BfnXmlImportAddtionalTerms import to new secundum source handling
- 10:08 PM Revision 8fbe8887 (cdmlib-apps): cleanup
- 05:48 PM feature request #8708 (Feedback): Sort taxa in distribution editor same as in navigator
- This to me looks like a duplicate. Katja, can you check and link to the according ticket and close ticket as duplicat...
- 04:32 PM feature request #6598 (Closed): Migrate commands and handlers
- Andreas Müller wrote:
> target version is missing!
>
> Can we assess in current milestone what still needs to be ... - 04:09 PM Revision dcaf0220 (taxeditor): ref #8431: add rootnode to status label of cdmlight export
- 04:05 PM bug #8431: missing status bar for cdm light export
>
> ---
>
> Also we need to find out how to switch of that progress is only shown in status bar but not in dia...- 03:55 PM Revision c6575e6f (cdm-dataportal): ref #9582 typos in README
- 03:42 PM Revision 547b7def (cdm-dataportal): ref #9582 apache 2 site config templates and updated README
- 02:35 PM feature request #9111 (Rejected): Handle Malformed URIs
- this is handled in cdmlib now, therefore I close this ticket as rejected.
- 02:31 PM bug #9390 (Feedback): Remaining issues for set secundum dialog
- we should discuss if we want to remove the line break for all dialogs, then I create a new ticket for adaption of dia...
- 01:20 PM Revision 66865d7c (cdm-dataportal): ref #9582 harmonizing taxon tree module name with other blocks
- 12:19 PM Revision 2b3987e1 (cdm-dataportal): ref #9582 new-site.sh more robust and with basic support for multisite installations - lesser debug output
- 12:17 PM Revision 305d26ff (cdm-dataportal): ref #9582 new-site.sh more robust and with basic support for multisite installations
- 10:18 AM Revision add78389 (cdm-dataportal): ref #9582 zen main theme as composer project and depencency for zen-dataportal
04/16/2021
- 10:56 PM Revision 63b94f89 (cdm-dataportal): ref #9582 re-enabling upload
- 10:55 PM Revision b79572e0 (cdm-dataportal): ref #9582 removing obsolete deploy.sh script
- 10:54 PM Revision 434e5468 (cdm-dataportal): ref #9582 correct build order by dependency and oher fixes
- 10:46 PM bug #9583 (Closed): Fix formatting of parent area in condensed distributions string if subareas have various status but at least 1 area has status native
- To me the result looks like expected. Reopen if not yet fully fixe.
- 07:45 PM bug #9583 (Resolved): Fix formatting of parent area in condensed distributions string if subareas have various status but at least 1 area has status native
- Applied in changeset commit:cdmlib|e2fafd15b80ee6fc8dc2cec59f0d74389ea48fe6.
- 07:42 PM bug #9583 (Closed): Fix formatting of parent area in condensed distributions string if subareas have various status but at least 1 area has status native
- This issue is described in #8297#note-15 and has not yet been handled there.
Examples are **Tu(A** -E) or **Ca**(?C ... - 10:16 PM Revision 593fe3e9 (cdm-dataportal): ref #9582 remaming cdm_portal_testing profile
- 10:13 PM feature request #5573 (Resolved): Cache Strategy for Media Specimen required
- 09:49 PM feature request #9541 (Resolved): Improve referencing objects handling
- 09:20 PM feature request #9537 (Resolved): Implement ratioToStructure in TaxEditor
- I guess this is for review.
- 09:19 PM bug #9526 (Closed): Sort order in E+M distribution string should be strictly alphabetic
- I guess this is fixed. We may reopen if new issues arise.
- 08:52 PM Revision 5a70408c (cdm-dataportal): ref #9582 pack-and-delpoy improved, completed and new-site setup script
- 08:37 PM Revision 53b76085 (cdm-dataportal): ref #9582 installation profiles with lower case ids - adapting composer.json
- 08:35 PM Revision 369de2b8 (cdm-dataportal): ref #9582 installation profiles with lower case ids
- 07:47 PM Revision 0d7aaec6 (cdmlib): add test for tribe parsing which has a suborder ending
- 07:46 PM Revision ad9f3105 (cdmlib): cleanup
- 07:45 PM Revision e2fafd15 (cdmlib): fix #9583 bold formatting for main areas with at least 1 native sub-area
- 04:59 PM Revision 57db05c4 (cdm-dataportal): ref #9582 removing obsolete function from composer helper
- 04:53 PM Revision 58848045 (cdm-dataportal): ref #9582 updating README
- 04:51 PM Revision 98364e35 (cdm-dataportal): ref #9582 moving jenkins-ci script folder into root project script/
- 04:46 PM Revision 844455cb (cdm-dataportal): ref #9582 new delpoyment script
- 02:15 PM Revision a1b89d4c (taxeditor): Merge branch 'release/5.22.0' into develop
- 02:15 PM Revision 16a19db5 (taxeditor): Merge branch 'release/5.22.0'
- 01:58 PM Revision 3338ac1f (taxeditor): Fix NPE for Cancel in ChangeSynonymToAcceptedTaxonHandlerE4
- 01:58 PM Revision d33f36bb (taxeditor): cleanup and fix NPE if no active session in debug view
- 01:54 PM Revision 108bb193 (cdm-server): Merge branch 'release/5.22.0' into develop
- 01:54 PM Revision 0deceaf8 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 01:53 PM Revision 8eba684e (cdm-server): updating poms for branch'release/5.22.0' with non-snapshot versions
- 01:52 PM Revision 57dbd275 (cdm-webapp): Merge branch 'release/5.22.0' into develop
- 01:52 PM Revision ffb1dfc6 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 01:52 PM Revision 278e3672 (cdm-webapp): updating poms for branch'release/5.22.0' with non-snapshot versions
- 01:52 PM Revision 50e2d2fd (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.22.0
- 01:52 PM Revision 707d1eb4 (cdm-vaadin): Merge branch 'release/5.22.0' into develop
- 01:52 PM Revision 543fe37b (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 01:49 PM Revision f2851d5f (cdm-dataportal): Merge branch 'release/5.22.0' into develop
- 01:49 PM Revision 84dbb354 (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
- 01:49 PM Revision 6094b465 (cdm-dataportal): updating poms for branch'release/5.22.0' with non-snapshot versions
- 01:49 PM Revision e431dcad (cdm-vaadin): updating poms for branch'release/5.22.0' with non-snapshot versions
- 01:48 PM Revision b06cc9e9 (cdm-dataportal): release-preparation: production level css
- 01:48 PM Revision 1e8b8504 (cdm-vaadin): jenkins bumping cdmlib.version to 5.22.0
04/15/2021
- 06:03 PM Revision 861435e7 (cdm-dataportal): ref #9582 documentation
- 06:02 PM Revision 70a77f5c (cdm-dataportal): ref #9582 root composer project set up for creating an runnable drupal-7 + dataportal installation
- 06:01 PM Revision 69f53839 (cdm-dataportal): ref #9582 zen_dataportal theme as composer project
- 06:00 PM Revision d19eb315 (cdm-dataportal): ref #9582 data_portal module as composer project
- 05:59 PM Revision 664d5943 (cdm-dataportal): ref #9582 installation profiles as composer project
- 05:58 PM task #9582 (New): provide runnable dataportal installation bundled with composer
- [Composer](https://getcomposer.org) is the de-facto standard for managing php dependencies.
Use composer to create... - 04:55 PM Revision dbfb8b15 (cdmlib): Updating develop poms back to pre merge state
- 04:55 PM Revision e8df6d21 (cdmlib): Merge branch 'master' into develop
- 04:55 PM Revision 64953d11 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 04:55 PM Revision 0e499191 (cdmlib): Merge branch 'release/5.22.0'
- 04:35 PM Revision 89f252c1 (cdmlib): updating poms for branch'release/5.22.0' with non-snapshot versions
- 04:34 PM Revision a4c0b43d (cdm-dataportal): dataportal installation profiles as separate composer project
- 04:28 PM Revision c218de49 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.22.0-SNAPSHOT
- 04:28 PM Revision a22ed7b4 (cdm-webapp): updating poms for 5.23.0-SNAPSHOT development
- 04:28 PM Revision 622517ac (cdm-webapp): updating poms for 5.22.0 branch with snapshot versions
- 04:28 PM Revision cba18d6f (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.23.0-SNAPSHOT
- 04:23 PM Revision 4d36fd02 (cdm-vaadin): jenkins bumping cdmlib.version to 5.22.0-SNAPSHOT
- 04:23 PM Revision 2edc1951 (cdm-vaadin): updating poms for 5.23.0-SNAPSHOT development
- 04:23 PM Revision ea06fcad (cdm-vaadin): updating poms for 5.22.0 branch with snapshot versions
- 04:22 PM Revision 91a81b9f (cdm-vaadin): jenkins bumping cdmlib.version to 5.23.0-SNAPSHOT
- 04:13 PM Revision d3d0be17 (taxeditor): Updated version in pom / project files to taxeditor version : 5.23.0-SNAPSHOT and cdmlib version : 5.23.0-SNAPSHOT
- 04:13 PM Revision 9985027d (taxeditor): Updated version in pom / project files to taxeditor version : 5.22.0 and cdmlib version : 5.22.0
- 04:12 PM Revision 76d24e9c (cdm-dataportal): updating poms for 5.23.0-SNAPSHOT development
- 04:12 PM Revision 13cdd850 (cdm-server): updating poms for 5.23.0-SNAPSHOT development
- 04:08 PM Revision 72f8969c (cdmlib): updating poms for 5.23.0-SNAPSHOT development
- 03:34 PM Revision be5daae5 (cdm-dataportal): composer.json file for cdm_dataportal module
- 03:05 PM task #9579 (Worksforme): restore css3pie if needed
- It is working again with compass 0.12.7 on the integration server as well as locally.
The error documented in the ... - 03:02 PM Revision 2b84b35c (cdm-dataportal): ref #9579 reartivating restriction in compass-watch for compass 0.12.7 + css files
- 02:39 PM Revision bb8be86d (cdm-dataportal): ref #9579 reactivating css3pie for compass 0.12.7
- 12:34 PM Revision bbe2f24e (taxeditor): ref #9537: adapt character label for ratio to
- 12:29 PM feature request #9570 (Closed): Use tagged text for NameTypeDesginations name part
- I did not encounter any problems in phycobank which are due to these changes.
Ticket can be closed - 12:27 PM task #9490 (Closed): avoid rank entity in TaxonNameParts
- done
- 12:19 PM bug #9504 (Closed): Changing term tree title is not persisted
- works as expected now
- 11:48 AM Revision 06cd9255 (cdm-dataportal): removing characters which have gone astray
- 10:38 AM bug #9468 (Worksforme): specimen type of existing name cannot be saved
- has been solved meanwhile in another context
- 08:43 AM Revision 02d1ca76 (cdm-dataportal): typo
- 08:40 AM Revision 562d3bc7 (cdm-dataportal): cleaning up
- 08:37 AM bug #9578 (Closed): Multiselect for input of distribution editor creates duplicates
- looks fine and works as expected
04/14/2021
- 10:51 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- I tested now and it seems to work as expected. Please also review.
- 06:21 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Katja Luther wrote:
> Sorry it is the method listChildrenOfRecursive, there the node is added to the result:
>
> ... - 04:50 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Andreas Müller wrote:
> Katja Luther wrote:
> > The criteria for getting the children is
> >
> > ~~~ java
> > ... - 04:43 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Katja Luther wrote:
> The criteria for getting the children is
>
> ~~~ java
> crit.add( Restrictions.lik... - 02:22 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Katja Luther wrote:
> > > > please re... - 02:04 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > please review my changes.
> >
> > Hav... - 01:57 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Andreas Müller wrote:
> Katja Luther wrote:
> > please review my changes.
>
> Have you tested this? It does not ... - 12:16 PM bug #9578 (Feedback): Multiselect for input of distribution editor creates duplicates
- Katja Luther wrote:
> please review my changes.
Have you tested this? It does not work. And it can't work as pare... - 09:53 AM bug #9578: Multiselect for input of distribution editor creates duplicates
- Katja Luther wrote:
> Andreas Müller wrote:
> > This works now for taxon nodes not sharing duplicates (e.g. for sib... - 09:52 AM bug #9578: Multiselect for input of distribution editor creates duplicates
- please review my changes.
- 09:48 AM bug #9578: Multiselect for input of distribution editor creates duplicates
- Andreas Müller wrote:
> This works now for taxon nodes not sharing duplicates (e.g. for sibblings). It still shows d... - 10:48 PM bug #9581 (New): Strange focus behavior in taxon navigator after right mouse click
- How to reproduce:
* Open referencing objects view
* Select 2 taxa in navigator and open in distribution editor vi... - 06:57 PM Revision 128e9f08 (cdmlib): cleanup
- 06:57 PM Revision ab18e527 (cdmlib): ref #9578 , ref #8889 fix duplicate handling in getTaxonDistributionDTO
- 06:38 PM bug #9468: specimen type of existing name cannot be saved
- Checked it in the Test system. The described error does not occur anymore. The ticket can be closed.
(Maybe it occur... - 05:33 PM bug #9468 (Feedback): specimen type of existing name cannot be saved
- seems to be fixed already, please can you verify?
- 06:18 PM Revision 5927beb2 (cdmlib): cleanup
- 06:18 PM Revision 78be9787 (cdmlib): ref #9578 , ref #8889 add parentNode in getTaxonDistributionDTO() instead and handle openChildren correctly there
- 06:18 PM Revision ce131644 (cdmlib): handle UTF8 correctly in HGTaxonComparatorTest
- 06:18 PM Revision 273d91ee (cdmlib): ref #9578 , ref #8889 switch on sorting for recursive=false in TaxonNodeServiceImpl.loadChildNodesOfTaxonNode()
- 06:18 PM Revision d0b26ef2 (cdmlib): cleanup
- 06:18 PM Revision bf69d17d (cdmlib): ref #9578 , ref #8889 fix behavior of TaxonNodeDaoHibernateImpl.listChildrenOf() with recursive=true and comparator
- * current implementation also returns the parent which is semantically not correct and differs from implementation wi...
- 05:28 PM bug #7943: TypeDesignationsEditor Select Reference for figure
- still an open issue
- 05:19 PM bug #9568 (Closed): TypeSpecimenEditor: Selection of a reference of an typified image
- 05:18 PM feature request #7599 (Closed): treeView for specimen data in dataportal
- appart from the questions discussed in #9579 this ticket is now complete.
- 05:16 PM bug #9555 (Closed): symbols for record basis (and kind of unit) in derivation tree
- new ticket for further symbols #9580
- 05:15 PM bug #9580 (New): more symbols for record basis (and kind of unit) in derivation tree - coninuation
- this is a continuation ticket for #9555
show symbols with the units-header per record basis and kind of unit if ne... - 05:04 PM Revision ce564745 (cdmlib): ref #9556 avoiding collection of full derivatives tree in DTOs - using maxdepth parameter
- 04:01 PM bug #9504 (Resolved): Changing term tree title is not persisted
- This should be fixed now. Please review.
- 12:53 PM bug #9504: Changing term tree title is not persisted
- Maybe we can have a look to this again, now, as there is still some time for the release. If not possible to solve be...
- 03:59 PM Revision f8d807a7 (taxeditor): ref #9504: fix saving label changes of newly created term trees
- 02:15 PM Revision f9e96761 (cdm-dataportal): ref #7599 ref #6866 removing replaced and now unused methods
- 02:10 PM task #9579: restore css3pie if needed
- before doing the release we need to decide for how important this is.
The compass installlation on the integration... - 01:30 PM Revision 2aa06679 (cdm-server): fixing bug in postint script of debian package
- 01:28 PM Revision cc1886a6 (cdmlib): ref #9556 avoiding collection of full derivatives tree in DTOs - bugfix
- 12:47 PM bug #8233 (In Progress): [Follow up] Creating type duplicates
- The persistent identifier issue works now. I set the ticket back to "In progress" as there are other remaining issues.
- 12:38 PM feature request #9537 (Feedback): Implement ratioToStructure in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > Also the ... - 09:07 AM feature request #9537: Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also the button checks if a vocabulary... - 09:06 AM feature request #9537 (Resolved): Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also the formatting (label) for the ch... - 09:52 AM Revision e5083306 (cdmlib): ref #9578: avoid duplicates for parent and child selection
- 09:06 AM Revision 948bc8b0 (taxeditor): ref #9537: new label for ratio to
- 08:26 AM Revision bd13c880 (taxeditor): ref #9537: no warning if no vocabulary is chosen
- 08:15 AM Revision 9359a3bd (taxeditor): other/given name in bulk editor and details view
- 08:11 AM Revision 95e7a8cf (taxeditor): fix label in aggregation wizard
04/13/2021
- 10:22 PM bug #9568: TypeSpecimenEditor: Selection of a reference of an typified image
- Selection of a reference of an typified image in the TypeSpecimenEditor works now as expected, thanks. The ticket can...
- 04:18 PM bug #9568: TypeSpecimenEditor: Selection of a reference of an typified image
- please test once the server is updated (~1h from now on)
- 03:05 PM bug #9568 (Resolved): TypeSpecimenEditor: Selection of a reference of an typified image
- Applied in changeset commit:cdm-vaadin|e8dcb430eb56a577c61ef744ce689094e2093d90.
- 03:03 PM bug #9568: TypeSpecimenEditor: Selection of a reference of an typified image
- This is an regression introduced in the context of #9480
- 04:48 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also the formatting (label) for the character does not change yet e... - 04:45 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also the button checks if a vocabulary is chosen. This is not neces... - 03:10 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> Also the formatting (label) for the character does not change yet even if it has no protecte... - 03:05 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> Also the button checks if a vocabulary is chosen. This is not necessary as the character alr... - 03:04 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> Finally, if possible, the new button should only be enabeled if a structure and a character ... - 03:04 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> The ratio to is currently only shown after the character editor was saved. It should be show... - 01:51 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Finally, if possible, the new button should only be enabeled if a structure and a character node is selected.
- 12:24 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Also the formatting (label) for the character does not change yet even if it has no protected titleCache.
- 12:22 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Also the button checks if a vocabulary is chosen. This is not necessary as the character already exists and only is u...
- 12:22 PM feature request #9537 (Feedback): Implement ratioToStructure in TaxEditor
- The ratio to is currently only shown after the character editor was saved. It should be shown immediately after press...
- 04:31 PM bug #9556 (Closed): occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- can be closed now
- 04:23 PM bug #9556 (Resolved): occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- after the commit:6d3c3fa9 which is rather related to `listRootUnitDTOsByAssociatedTaxon()` the web services should no...
- 04:16 PM feature request #9332 (Closed): Rename TypeDesignationBase.source to .designationSource
- should be fixed now
- 03:40 PM feature request #9332 (Resolved): Rename TypeDesignationBase.source to .designationSource
- the renamed field is causing LIEs in cdm-vaadin, so this ticket is not fully solved.
e.g.
http://test.e-taxonom... - 04:11 PM Revision 6c2110e6 (cdmlib): ref #9332 adapting init strategy to renamed field source -> designationSource
- 04:07 PM Revision 2121e775 (cdm-vaadin): ref #9480, fix #9568 restoring reference pagingProvider for media references of type specimens - 2
- 03:07 PM Revision 1a6e9489 (taxeditor): ref #9537: enable/disable buttons, refresh issue
- 03:05 PM Revision e8dcb430 (cdm-vaadin): ref #9480, fix #9568 restoring reference pagingProvider for media references of type specimens
- 02:28 PM Revision 031d9fa1 (taxeditor): ref #8233: restructure clone type designation wizard
- 02:26 PM bug #8233: [Follow up] Creating type duplicates
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> >>...
> > > This is how it was meant. The... - 02:08 PM bug #8233 (Feedback): [Follow up] Creating type duplicates
- Katja Luther wrote:
> Andreas Müller wrote:
>>...
> > This is how it was meant. Therefore I removed the first "NK"... - 02:07 PM bug #8233: [Follow up] Creating type duplicates
- Sorry I missed to push some files, please review now.
- 09:25 AM bug #8233: [Follow up] Creating type duplicates
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > I add the "fast" tag for the last issu... - 02:13 PM Revision 3f78f840 (taxeditor): cleanup
- 02:01 PM Revision a9d8d871 (taxeditor): ref #8233: adapt method call for clone typedesignation
- 01:54 PM Revision 6d3c3fa9 (cdmlib): ref #9556 avoiding collection of full derivatives tree in DTOs
- 01:27 PM Revision 2119bbcd (cdmlib): ref #8233: add pref stable identifier to cloneTypedesignation method
- 12:04 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- This works now for taxon nodes not sharing duplicates (e.g. for sibblings). It still shows duplicates if e.g. one sel...
04/12/2021
- 08:35 PM bug #8233: [Follow up] Creating type duplicates
- Katja Luther wrote:
> Andreas Müller wrote:
> > I add the "fast" tag for the last issue ("Add "Preferred Stable Ide... - 03:35 PM bug #8233: [Follow up] Creating type duplicates
- Andreas Müller wrote:
> I add the "fast" tag for the last issue ("Add "Preferred Stable Identifier" to the list of a... - 04:16 PM Revision 8d3e080c (taxeditor): ref #8233: add pref stable identifier field in duplicate type designation wizard
- 09:51 AM Revision fd91d9a0 (cdmlib): fix ClassNotFoundException
04/08/2021
- 03:43 PM Revision aa55643c (cdm-dataportal): ref #7599 derivate tree units: icon stack for type specimens
04/07/2021
- 02:24 PM Revision 2b85bf78 (cdm-dataportal): ref #7599 derivate tree with collapsible items - adapting tests
04/06/2021
- 10:50 PM Revision 2ed89b85 (cdm-dataportal): ref #7599 derivate tree with collapsible items
- 10:49 PM Revision 4ff1cfa5 (cdm-dataportal): ref #9579 ref #7599 deactivating css3pie to allow using a more recent compass version
- 10:43 PM bug #9555 (In Progress): symbols for record basis (and kind of unit) in derivation tree
- only some symbols are missing
- 10:43 PM bug #9555 (Resolved): symbols for record basis (and kind of unit) in derivation tree
- 10:35 PM task #9579 (Worksforme): restore css3pie if needed
- during the implemetation of the derivation tree view for #7599 and #6866 it was necessary to upgrade `compass` interm...
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