Activity
From 03/02/2021 to 03/31/2021
03/31/2021
- 06:50 PM feature request #9537 (In Progress): Implement ratioToStructure in TaxEditor
- Implemented a button to add ratio to structure to character.
Still needed is a button in details view to remove th... - 12:17 PM feature request #9575 (Closed): Allow flag to include authors in taxon and name search in TaxEditor
- In #6128 the possibility to include authors were added to the according service. We should also allow in TaxEditor de...
- 12:15 PM feature request #9574 (Closed): Add html tags for names in NameTypeDesignation in CdmLightExport
- this is fixed.
Walter checked it. - 12:12 PM feature request #9574 (Closed): Add html tags for names in NameTypeDesignation in CdmLightExport
- mail:
noch eine Fragen, die man eventuell schnell lösen könnte (für mich recht kompliziert): Kannst Du die als Typ... - 11:26 AM feature request #9544 (Feedback): In bulkeditor the strings should be copyable
- This works as expected. Only multiple cell selection still has the old behavior. If this is very easy to fix, please ...
- 11:18 AM bug #9504: Changing term tree title is not persisted
- Katja Luther wrote:
> Andreas Müller wrote:
> > This still does not work
>
> I tested on nightly and it works? D... - 10:06 AM bug #9504: Changing term tree title is not persisted
- Andreas Müller wrote:
> By the way, it would good to use an underscore before the default title like "_New feature t... - 09:32 AM bug #9504: Changing term tree title is not persisted
- Andreas Müller wrote:
> This still does not work
I tested on nightly and it works? Did you update? - 11:00 AM feature request #9331 (Closed): Distinguish DescriptionElementSource and NamedSource
- The adaptions in editor work and the class structure looks good.
- 10:55 AM feature request #9561 (Closed): In name and taxon search if titleCache is protected the search should run on titleCache also
- works now as expected.
- 10:46 AM feature request #9570: Use tagged text for NameTypeDesginations name part
- for the cdmLight usecase it works as expected. Maybe Ak should have a look whether the implementation works for phyco...
- 10:34 AM feature request #9515 (Closed): Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- adapted the code, tested and worked as expected.
- 10:33 AM bug #9531 (Closed): Add Names in OriginalSpelling to the delete configuration
- adapt the error message.
- 10:16 AM bug #9573 (New): Space between collection sections and elements above and behind are too large
- see #9549 and others
- 10:15 AM feature request #9549 (Closed): Reduce visible fields for nomenclatural source and secundum source in TaxEditor
- Andreas Müller wrote:
> This works. Only there is much space between "detail" and "Links" (for secundum reference) a... - 10:06 AM feature request #9572 (Closed): After creating a new term tree set the focus to the new tree
- ... and in details view in title cache field
03/30/2021
- 11:02 PM feature request #9571: Improve sec-formatting for taxa with webpage secundum
- this should be fixed, can you please review
- 11:01 PM feature request #9571 (Resolved): Improve sec-formatting for taxa with webpage secundum
- Applied in changeset commit:cdmlib|6202dea80501881fb388073b428c15c4c0fc255b.
- 10:48 PM feature request #9571 (Closed): Improve sec-formatting for taxa with webpage secundum
- WGB:
mir ist gerade aufgefallen, dass es wohl keine solche Short-Citation (anlaog zu Autor-Nachname oder Teamnachn... - 09:06 PM feature request #9570: Use tagged text for NameTypeDesginations name part
- Please review. If anything doesn't work as expected please add test to newly created test class.
- 09:02 PM feature request #9570 (Resolved): Use tagged text for NameTypeDesginations name part
- Applied in changeset commit:cdmlib|fe3e32ab2e841cc1ca2fbec4734e32e0ee8c52f4.
- 09:01 PM feature request #9570 (Closed): Use tagged text for NameTypeDesginations name part
- ... and prepare for tagged text for other type designation categories
- 03:00 PM feature request #9544 (Resolved): In bulkeditor the strings should be copyable
- 02:27 PM task #9569 (New): Delete taxon and delete name should use the same UI and same semantics for deleting names
- Currently the delete name configurator for deleting taxa and names differ currently. E.g. the delete type designation...
- 02:13 PM bug #9531 (Feedback): Add Names in OriginalSpelling to the delete configuration
- In the error message we should use "... original spelling" , not camel case.
Except for this the ticket can be clo... - 01:45 PM bug #9562 (Closed): Publish flag of field units and derived units are not handled correctly
- This seems to work
- 01:40 PM bug #9533 (Closed): NPE when reusing name for new taxon
- This seems to work now
- 01:32 PM feature request #9540: Handle classification source as source in TaxEditor
- I guess this is fast as it is mostly c&p from other single sources
- 01:29 PM feature request #9328 (Closed): Adapt Editor to switch to originalSource for taxon secundum
- Works as expected.
- 01:26 PM bug #9504: Changing term tree title is not persisted
- By the way, it would good to use an underscore before the default title like "_New feature tree". Also having the foc...
- 01:25 PM bug #9504 (Feedback): Changing term tree title is not persisted
- This still does not work
- 01:18 PM feature request #9545 (Closed): Remove "External Link type" completely
- 01:03 PM feature request #9549 (Feedback): Reduce visible fields for nomenclatural source and secundum source in TaxEditor
- This works. Only there is much space between "detail" and "Links" (for secundum reference) and between "details" and ...
- 12:37 PM task #9567 (Resolved): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- The mentioned issues should be fixed.
Maybe you can still add some tests for HomotypicGroupNameComparator which ex... - 12:27 PM task #9567 (Feedback): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- I fixed the potetial NPE and adapted the compare to include hybrid sign if names do not differ in any other part.
- 12:23 PM task #9567 (Resolved): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Applied in changeset commit:cdmlib|e0c610f10302b0c755f509a33bd3df645077ea69.
- 11:42 AM task #9567: Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- I would add another comparison if the first two comparisons return 0 to compare the not normalized titleCache, do you...
- 11:24 AM task #9567: Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > In handleSameBasionym a return was missi... - 10:36 AM task #9567: Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Andreas Müller wrote:
> Katja Luther wrote:
> > In handleSameBasionym a return was missing. After fixing that the r... - 10:11 AM task #9567: Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Katja Luther wrote:
> In handleSameBasionym a return was missing. After fixing that the result is correct.
> But ma... - 08:46 AM task #9567 (Feedback): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- In handleSameBasionym a return was missing. After fixing that the result is correct.
But maybe the NPE should be avo... - 11:53 AM bug #9566 (Closed): Handle nomenclatural standing correctly in cdmlight / sorting algorithms
- this works now as expected, also for the homotypic groups in editor.
- 11:53 AM bug #9441 (Closed): Move names with invalid designation name relationships to the end in taxon comparator
- this works now as expected, also for the homotypic groups in editor.
- 10:28 AM bug #9568 (Closed): TypeSpecimenEditor: Selection of a reference of an typified image
- Vaadin TypeSpecimenEditor (Test as well as production):
With change of the typification reference with preselected...
03/29/2021
- 09:15 PM bug #9566 (Resolved): Handle nomenclatural standing correctly in cdmlight / sorting algorithms
- Please review.
- 06:58 PM bug #9566 (Closed): Handle nomenclatural standing correctly in cdmlight / sorting algorithms
- This includes using the correct symbol whenenver a "name" is a designation only.
And sorting designations to the e... - 09:13 PM task #9567: Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- please review
- 08:46 PM task #9567 (Resolved): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Applied in changeset commit:cdmlib|8432293fbc9496c0b4c50bda3516ef9e0ac3b984.
- 08:46 PM task #9567 (Closed): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Both classes have mostly the same code so they are very redundant. HGNameComparator seems to be an adapted copy of HG...
- 06:49 PM feature request #9561: In name and taxon search if titleCache is protected the search should run on titleCache also
- I adapted the search. Can you please test again. I havn't tested yet in TaxEditor, only in test class (see code).
- 06:45 PM feature request #9561 (Resolved): In name and taxon search if titleCache is protected the search should run on titleCache also
- Applied in changeset commit:cdmlib|571eb9f1582883152db414442c0f878d7925280b.
- 10:50 AM feature request #9561: In name and taxon search if titleCache is protected the search should run on titleCache also
- Yes, I also thought about this but did not implement it such as I did not want to have all the subspecies in the resu...
- 10:39 AM feature request #9561 (Feedback): In name and taxon search if titleCache is protected the search should run on titleCache also
- It works as expected, but searching without authors for a titlecache with authors does not match. Maybe we should add...
- 11:06 AM feature request #8968 (Closed): filter Bulk editor for created by
- created by moved, close this ticket.
- 10:53 AM bug #9533 (Resolved): NPE when reusing name for new taxon
- Andreas Müller wrote:
> Andreas Müller wrote:
> > When deleting the selected name again I now get another NPE:
>
... - 10:46 AM bug #9556: occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- I removed that the derivatives are added to the fieldUnitDto in loadFieldUnitDto().
- 10:42 AM task #9558 (Closed): General tests for cdmlight export
- Looks fine.
- 08:38 AM bug #9565 (New): Revise name render templates selection strategy
- In the flora of cuba the syn-sec. references are expected to be shown:
http://portal.cybertaxonomy.org/flora-cuba/...
03/26/2021
- 04:23 PM task #9564 (New): synonymy: suppress output of sec references if it is equal with the accepted taxon sec ref
- "Da wäre die Möglichkeit interessant, nur die sec.Refs. anzuzeigen, die NICHT die gleiche sec.-Ref. haben, die also d...
- 04:19 PM bug #9556: occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- so we should modify this service method so that it no longer add the derivatives or is there an alternative service m...
- 04:07 PM bug #9556: occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- Andreas Kohlbecker wrote:
> reopening this issue since `loadFieldUnitDTO()` is being used in the Taxeditor
>
> @K... - 03:57 PM bug #9556: occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- DerivedUnitFacadeController.doGetFieldObjectMediaDTO() is no longer using loadFieldUnitDTO see commit:3309605f
there... - 02:32 PM bug #9556 (Feedback): occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- reopening this issue since `loadFieldUnitDTO()` is being used in the Taxeditor
@Katja: are the derivatives of the ... - 02:26 PM bug #9556 (Rejected): occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- since the intermediate units are not used at all by consuming methods, they should be skipped completely.
- 12:16 PM bug #9556: occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- This method is kind of misused: After solving #9557 it is only being used by `.DerivedUnitFacadeController.doGetField...
- 04:13 PM task #6208 (New): Implement synonymy service responding with DTO
- 04:07 PM task #6208: Implement synonymy service responding with DTO
- I think we should reopen this ticket since we will be working on this this year
- 04:10 PM bug #9562: Publish flag of field units and derived units are not handled correctly
- this should be fixed. The problem was that the value for the publish checkbox was taken from DerivedUnitFace.isPublis...
- 04:07 PM bug #9562 (Resolved): Publish flag of field units and derived units are not handled correctly
- Applied in changeset commit:taxeditor|6dd14e6fb067f81fb1deba7377d5bf81312a5991.
- 03:59 PM bug #9562 (Closed): Publish flag of field units and derived units are not handled correctly
- when editing the field unit publish flag the publish flag of the derivate units are changed, too and/or not saved cor...
- 04:03 PM bug #9563 (New): MediaDTO factory method supports media representation preferences
- see comment in code:
~~~java
/**
* Creates a list of DTOs from the Media entity.
* For each Medi... - 02:00 PM bug #9559: OccurrenceServiceImpl.findRootUnitDTOs() and related methods suppress unpublished units
- Andreas Kohlbecker wrote:
> The priority of this ticket depends on the question if there are projects with units whi... - 01:57 PM bug #9559 (New): OccurrenceServiceImpl.findRootUnitDTOs() and related methods suppress unpublished units
- I think this ticket should be checked against #8424 and #4484 if they are duplicates of each other
- 11:12 AM bug #9559 (Feedback): OccurrenceServiceImpl.findRootUnitDTOs() and related methods suppress unpublished units
The priority of this ticket depends on the question if there are projects with units which must be undisclosed and ...- 11:09 AM bug #9559 (New): OccurrenceServiceImpl.findRootUnitDTOs() and related methods suppress unpublished units
- All methods in OccurrenceServiceImpl which deliver units for the data portal via web services need to filter out unpu...
- 01:54 PM feature request #9561: In name and taxon search if titleCache is protected the search should run on titleCache also
- Please review
- 12:08 PM feature request #9561 (Resolved): In name and taxon search if titleCache is protected the search should run on titleCache also
- Applied in changeset commit:cdmlib|9bf89673c622c6823cefe921429b1f2438dc3c0a.
- 12:06 PM feature request #9561 (Closed): In name and taxon search if titleCache is protected the search should run on titleCache also
- ... otherwise users may think the name does not exist yet if the nameCache is not filled correctly.
Currently name... - 12:38 PM bug #9504 (Resolved): Changing term tree title is not persisted
- this is fixed
- 12:00 PM bug #9557 (Closed): implement occurrence/{uuid}/rootUnitDTOs
- 10:39 AM bug #9557: implement occurrence/{uuid}/rootUnitDTOs
- the web service `occurrence/{uuid}/rootUnitDTOs` and service method `OccurrenceServiceImpl.findRootUnitDTOs()` are mi...
- 11:48 AM feature request #9544: In bulkeditor the strings should be copyable
- this is implemented, please review.
- 10:08 AM feature request #9545: Remove "External Link type" completely
- please review
- 10:08 AM feature request #9545 (Resolved): Remove "External Link type" completely
- Applied in changeset commit:taxeditor|3470949e9aa012a03d23c1b0e44603ed698ee056.
- 10:00 AM feature request #9328 (Resolved): Adapt Editor to switch to originalSource for taxon secundum
- this is implemented, please review.
- 09:59 AM feature request #9549 (Resolved): Reduce visible fields for nomenclatural source and secundum source in TaxEditor
- this is fixed, please review.
03/25/2021
- 11:32 PM task #9558 (Resolved): General tests for cdmlight export
- This is fixed. Please review.
- 11:31 PM task #9558 (Closed): General tests for cdmlight export
- all tests for cdmlight export should include an exception, error and warning test.
Also a fullDataSample (FullCove... - 05:54 PM bug #9557 (Closed): implement occurrence/{uuid}/rootUnitDTOs
- see http://int.e-taxonomy.eu/cdmserver/integration_reference/occurrence/8259122c-7140-44f3-980e-1a6506ce8f50/fieldUni...
- 05:52 PM bug #9556 (Closed): occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- see http://localhost:8080/occurrence/8585081c-b73b-440b-b349-582845cf3fb4/fieldUnitDTOs.json
the response data ma... - 05:22 PM bug #9555 (Closed): symbols for record basis (and kind of unit) in derivation tree
- show symbols with the units-header per record basis and kind of unit if needed
A quickly assembled list:
**reco... - 04:03 PM feature request #9554 (New): option to suppress type designations in portal
- in the http://portal.cybertaxonomy.org/flora-cuba/ typedesignations are just hidden per css. The related footnotes ar...
- 04:01 PM bug #9553: Synonymy is missing in table of content
- The same is true for Polyt. Keys
- 03:50 PM bug #9553 (New): Synonymy is missing in table of content
- Configuration:
* Tabless Taxon page
* Synonym as separate tab
==> the synonymy is missing in the TOC
htt... - 01:09 PM bug #9550 (Closed): Recognize PhytoKeys and PLoS ONE in name parser
- Test run as expected.
- 12:48 PM feature request #9552: Add e-article number to Reference
- ERS:
... und so etwas ist auch nicht parsable (fascicle > 4 Zeichen): Lepyrodiclis alinihatii Menemen & al. in Nor... - 09:38 AM feature request #9552 (New): Add e-article number to Reference
- Journals publishing online have started giving numbers for there electronically published articles which seem to have...
03/24/2021
- 09:58 PM task #9014 (In Progress): Unparsable name strings
- 04:45 PM bug #9551 (Resolved): Recognize "series" in article parsing
- Applied in changeset commit:cdmlib|d9aa603aade3ded73eedd57d346e478e820073a4.
- 04:16 PM bug #9551 (Resolved): Recognize "series" in article parsing
- ... maybe also books etc.
- 02:20 PM bug #9550 (Resolved): Recognize PhytoKeys and PLoS ONE in name parser
- Applied in changeset commit:cdmlib|a119dab72f372797dc5e8afd8f34c53baa3e7440.
- 02:19 PM bug #9550 (Closed): Recognize PhytoKeys and PLoS ONE in name parser
- e.g. Pseudopodospermum baeticum (DC.) Zaika & al. in PhytoKeys 137: 68. 2020
- 11:25 AM feature request #8920: Make reference URL available in details view
- WGB:
Erstmal zum Direktlink zur Literatur-URL aus dem Details-VIew – fände ich wirklich toll (siehe ganz unten), d... - 11:19 AM feature request #9549: Reduce visible fields for nomenclatural source and secundum source in TaxEditor
- WGB:
Wenn Ihr an dieser Stelle schon am Arbeiten seid: Nochmal zum neuen Dialog, mit dem ich gar nicht glücklich b... - 11:15 AM feature request #9549 (Closed): Reduce visible fields for nomenclatural source and secundum source in TaxEditor
- Currently it shows the fields "type" and "description" for links and "original information", "idNamespace" and "idInS...
- 11:03 AM feature request #9548 (New): Handle links to websites, webapps or similar in image galleries (simple and UV)
- Sometimes users use links to websites within an image gallery. These usually are identified by mime type "text/html",...
- 10:59 AM feature request #9547 (New): Show warning in TaxEditor if a MediaRepresentation can not be shown in a Viewer
- Sometimes users use links to websites within an image gallery. These usually are identified mime type "text/html" or ...
- 10:51 AM feature request #9067 (Closed): [DISCUSS] Allow media to support external links not being files
- Andreas Kohlbecker wrote:
> I actually see no benefit of the "solutions" 2 - 4 over 1.
>
> Adding additional fiel... - 10:43 AM feature request #9546 (New): [DISCUSS] Merge ExternalLink and MediaRepresentation
- ... once MediaRepresentation has been merged with MediaRepresentationPart
Both classes store common information li... - 10:24 AM feature request #9296: Preference to show/not show infrageneric epithet for species
- NK:
zufällig bin ich nun wieder auf den Hintergrund in der Botanik gestoßen:
Code, https://www.iapt-taxon.org/n... - 10:01 AM feature request #9545 (Closed): Remove "External Link type" completely
- There is no real need for the ExternalLink.type attribute as today browsers all know how to open e.g. pdf. This was a...
- 09:52 AM bug #9538 (Closed): Changing accepted to synonym closes name editor tab even if canceled
- I also can't reproduce anymore. So I close and reopen if it appears again.
- 08:36 AM bug #9538 (Resolved): Changing accepted to synonym closes name editor tab even if canceled
- I can't reproduce this exception, also on nightly version. Maybe there was a state where the exception appeared.
- 09:20 AM bug #9542 (Closed): Bulk Editor search does not work after opening a name out of the bulk editor
- Works as expected and code looks reasonable.
03/23/2021
- 01:43 PM feature request #9544: In bulkeditor the strings should be copyable
- I guess this is fast to implement. If not, remove the tag.
- 11:54 AM feature request #9544 (Closed): In bulkeditor the strings should be copyable
- The user should be able to copy out of all columns in bulkeditor.
03/22/2021
- 02:38 PM bug #9543 (New): Revise, harmonize media list in SpecimenOrObservationBaseDTO vs. DerivedUnitFacade.getMediaTextData()
- `DerivedUnitFacade.getMediaTextData()` is being used to provide the media lists for the `DerivedUnit` and `FieldUnit`...
- 11:31 AM bug #9504: Changing term tree title is not persisted
- Not sure if this is fast but I could imagine that it is.
- 10:46 AM bug #9542: Bulk Editor search does not work after opening a name out of the bulk editor
- I guess this is for reveiew
- 10:40 AM bug #9542 (Resolved): Bulk Editor search does not work after opening a name out of the bulk editor
- Applied in changeset commit:taxeditor|e2d8b4196539aeb0c3e1a587026ca46ce1f1034a.
- 08:19 AM bug #9542 (Closed): Bulk Editor search does not work after opening a name out of the bulk editor
- mail WHB:
Noch eine Auffälligkeit. Neoporteria planiceps ist (als Name) vorhanden.
Im Bulk Editor wird er abe... - 10:40 AM feature request #8968 (Resolved): filter Bulk editor for created by
- Applied in changeset commit:taxeditor|3767457b3f1509b425d264ef930d384d9126a0d8.
03/19/2021
- 09:02 PM feature request #9541 (Closed): Improve referencing objects handling
- * DescriptionElementSource, SecundumSource and NomenclaturalStatus do now have a backlink to their referencing main o...
- 06:15 PM feature request #9331: Distinguish DescriptionElementSource and NamedSource
- This is generally solved and update script works now. The new class structure is now
~~~
OriginalSorceBase
|- Na... - 06:10 PM feature request #8761 (Closed): Remove TaxonName_NomenclaturalStatus MN table
- This works. The MN table is not touched anymore when data is edited.
- 04:13 PM feature request #9211 (Closed): Handle source(s) for Classification
- Update script worked correctly. I close this ticket. Followup ticket for TaxEditor exists. For dataportal probably no...
- 04:07 PM feature request #9540 (New): Handle classification source as source in TaxEditor
- WIth #9211 the reference for classification became a single source. The classification wizard should be adapted accor...
- 04:02 PM task #9315 (Closed): Remove old single source citation and microCitation columns
- All columns were correctly removed on test
- 03:55 PM feature request #9327 (Closed): Make taxon secundum reference an original source
- Closing this ticket as update script worked successfully on test server. Followup tickets for dataportal and taxedito...
- 03:46 PM feature request #9332 (Closed): Rename TypeDesignationBase.source to .designationSource
- 03:39 PM feature request #9507: Add ratioTo structure to Character
- AM:
ratioTo ist modellseitig jetzt implementiert und muss nur noch im TaxEditor zur Verfügung gestellt werden.
... - 03:32 PM feature request #9507 (Closed): Add ratioTo structure to Character
- 03:25 PM task #9330 (Closed): Remove "NomenclaturalSource" from OriginalSourceType
- 03:20 PM feature request #8876 (Rejected): nom. & gen. cons.
- AM:
Allerdings frage ich mich gerade, ob der neue Status wirklich „nom. & gen. cons.“ oder nur „gen. cons.“ heißen... - 02:21 PM bug #9538 (Feedback): Changing accepted to synonym closes name editor tab even if canceled
- I do now get:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/classification... - 12:23 PM bug #9538: Changing accepted to synonym closes name editor tab even if canceled
- Moved the close right before the creation of the operation, so also cancel of sec handling wizard does not close the ...
- 12:21 PM bug #9538 (Resolved): Changing accepted to synonym closes name editor tab even if canceled
- Applied in changeset commit:taxeditor|1103c727e0bcd2b58e88cfb536340490655d1429.
- 11:27 AM bug #9538 (Closed): Changing accepted to synonym closes name editor tab even if canceled
- When calling accepted to synonym on a taxon opened in name editor the tab is closed before the dialogue to select the...
- 01:07 PM feature request #8968 (Feedback): filter Bulk editor for created by
- Works as expected. I suggest to move the column before ID and UUID. But I am not sure. Generally the ticket can be cl...
- 01:02 PM feature request #9515: Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- I have renamed the method to set the description to the import state to get/setIndividualsAssociationDescriptionPerTa...
- 12:56 PM feature request #9515 (Feedback): Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- Have you tested with a real import that it works?
- 12:42 PM feature request #9518 (Closed): Add symbol to descriptions having status individual association in facts view
- Works as expected
- 12:23 PM feature request #9079: Move supported and available for parts of feature detail element to sections
- A similar availableFor section we will also have for Types like ExtensionType, AnnotationType, MarkerType and Identif...
- 12:22 PM feature request #9539 (In Progress): Implement availableFor for ExtensionType, MarkerType, AnnotationType and IdentifierType
- Similar to Features #9027
We may need to decide for all existing Types what they should support by default. Also w... - 12:09 PM bug #6182 (Rejected): Emptying protolog URI does not work
- As protologues are now handled as nomenclatural source external links this problem does not exist anymore. For extern...
- 12:05 PM bug #6686: Correct handling for chromatograms in dataportal
- This is somehow related to specimen handling and to media handling
- 12:02 PM feature request #8920: Make reference URL available in details view
- So I guess the button should be at one of the following positions:
Whenever there is a DO... - 11:44 AM bug #8837 (Worksforme): Name editor is not updated after change accepted to synonym
- For me this seems to be fixed. The name editor of the old accepted taxon is closed and the new synonym appears in the...
- 11:17 AM bug #8831 (Worksforme): saving name editor throws NPE
- This appeared before parsing and deduplication was handled serverside (#9078). Since then it was not observed anymore...
- 09:18 AM bug #8955: After saving a taxon the taxon navigator scrolls the taxon to the bottom
- AM:
ist eigentlich schon implementiert, dass der Navigator bei NameEditor-Save nur aktualisieren muss, wenn der Kn... - 07:55 AM bug #8421 (Rejected): icons in compose_specimen_table_top_down() are not visible
- with the new implementation of the derivation tree view this has become obsolete, see #7599 & #6866
- 07:26 AM feature request #8463: Make DeterminationEvent.references sources
- Currently this is not yet available in TaxEditor at all and it is questionable if we need multiple sources at all. I ...
03/18/2021
- 11:51 PM feature request #9211 (Resolved): Handle source(s) for Classification
- 09:56 PM feature request #8761 (Resolved): Remove TaxonName_NomenclaturalStatus MN table
- 06:46 PM feature request #9114: Handle malformed URIs in user type
- This ticket seems to be done or needs to be splitted into an open issues ticket. It can be moved back to 5.19(?) afte...
- 06:41 PM bug #8233: [Follow up] Creating type duplicates
- I add the "fast" tag for the last issue ("Add "Preferred Stable Identifier" to the list of available identifiers"). I...
- 06:37 PM bug #8421: icons in compose_specimen_table_top_down() are not visible
- I think this should be assigned to AK
- 06:36 PM bug #8659: Taxon navigator: not refreshed after ABCD file import
- Is this still an open issue? I think refresh now runs after all imports.
If fixed please close as duplicate or wor... - 06:24 PM feature request #8922: Make setting of sec-Reference configurable when moving synonyms.
- I flag this as fast as it is problably fixed already.
- 06:22 PM feature request #8930: Publishable objects should show icon if they are unpublished
- Katja Luther wrote:
> mail WB:
>
> In diesem Zusammenhang wollte ich auch anregen, die als doubtful markierten Ta... - 05:54 PM bug #8971: Long running tasks in taxon navigator should disable the navigator
- Andreas Müller wrote:
> WGB:
>
> hier nur nochmal die Bestätigung, dass das ein an verschiedenen Stellen auftrete... - 05:40 PM feature request #9089: Show descriptive datasets in description details view
- The read only version maybe is fast to implement?
- 05:37 PM feature request #9139: When deleting a taxon with images the configuration should also handle the image
- is this fast?
- 05:32 PM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
- I guess this is fast?
- 05:31 PM feature request #9321: Make availability of pro-parte synonyms configurable
- I guess this is fast to implement?
- 05:30 PM feature request #9328 (In Progress): Adapt Editor to switch to originalSource for taxon secundum
- This needs to be implemented as soon as the model changes are committed.
- 05:29 PM feature request #9333: Preference for display of protologue section in nomenclatural source section
- I think the second part of the description "Additionally we should ..." is already implemented. Is that true? If yes,...
- 05:28 PM feature request #9333: Preference for display of protologue section in nomenclatural source section
- Hi Katja, what do you think should we reuse the preference? Is it difficult to hide the external link part in the nom...
- 05:21 PM feature request #9370: Search in media bulk editor should include search on URI
- Maybe a like search is not possible here as it is a CLOB field. We had something similar for Rights search recently (...
- 05:00 PM bug #9532 (In Progress): Check whether all data are loaded for NameEditor
- 03:21 PM feature request #9332 (Resolved): Rename TypeDesignationBase.source to .designationSource
- This is solved in cdmlib but we need to check if it works in TaxEditor and vaadin
- 12:40 PM task #9330 (Resolved): Remove "NomenclaturalSource" from OriginalSourceType
- NomenclaturalSource does not make sense as source type anymore (same as potential new source type secundum source). T...
- 11:47 AM feature request #9331 (Resolved): Distinguish DescriptionElementSource and NamedSource
- 10:53 AM bug #8723 (Worksforme): Distribution detailsview: changing the area removes the state
- This seems to be fixed in the meanwhile. The status is only removed if the status selection does not match to the pos...
- 10:21 AM feature request #8968 (Resolved): filter Bulk editor for created by
- please review
- 10:20 AM feature request #8968 (New): filter Bulk editor for created by
- Added a new column 'created by' which is sortable.
- 10:20 AM feature request #8968 (Resolved): filter Bulk editor for created by
- Applied in changeset commit:taxeditor|57fd518bd253736b63310ea0fde64d96df21569d.
- 10:14 AM feature request #9518: Add symbol to descriptions having status individual association in facts view
- I guess this is for review
- 10:12 AM feature request #9518 (Resolved): Add symbol to descriptions having status individual association in facts view
- Applied in changeset commit:taxeditor|76156fc08bc63b480d62d46c945be2897bd65f98.
- 10:04 AM feature request #9515: Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- please review
- 10:02 AM feature request #9515 (Resolved): Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- Applied in changeset commit:cdmlib|25935ad5dc1e7e1ef297198e5ca0148e36f25230.
- 10:00 AM feature request #9515: Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- Now a description with type IndivialsAssociation is created or if already existing used to add the individual associa...
03/17/2021
- 11:08 PM feature request #9331 (In Progress): Distinguish DescriptionElementSource and NamedSource
- 10:15 PM feature request #9537 (Feedback): Implement ratioToStructure in TaxEditor
- for details see #9507.
We also need an according default formatting for the new character. - 10:14 PM feature request #9507 (Resolved): Add ratioTo structure to Character
- ratioToStructure added.
If ratioTo modifier is also needed open new ticket. - 10:04 PM feature request #9327 (Resolved): Make taxon secundum reference an original source
- 07:28 PM task #9536 (Closed): Remove old single source citation and microCitation columns for secundum and DescriptionElementBase_OriginalSourceBase and TaxonName_NomenclaturalStatus
- and Classification.source (#9211)
Secundum: #9327
follow up for #9315
~~~
//#9536
... - 07:24 PM task #9315 (Resolved): Remove old single source citation and microCitation columns
- 07:16 PM bug #9007: Enable i18n support for media description UI
- This seems to be partly fixed. I18n support exists for media description and for media title.
@Katja, can you please... - 06:58 PM feature request #8922: Make setting of sec-Reference configurable when moving synonyms.
- Katja, can you have a look if this is a real duplicate for #9340 and, if it is, close it as duplicate?
- 05:48 PM bug #9535 (Closed): harmonize DefinedTermBase and KeyTerm serializations
- 05:41 PM bug #9535 (Closed): harmonize DefinedTermBase and KeyTerm serializations
- DefinedTermBase and KeyTerms are serialized differently:
DefinedTermBase:
~~~json
{
'representation_L10n': ... - 02:19 PM feature request #9329: Implement sec reference as original source in dataportal
- AK:
diese Werte stehen werden an eu.etaxonomy.cdm.remote.json.util.CardinalityPropertyFilter.setExceptions() überg... - 01:35 PM bug #9533: NPE when reusing name for new taxon
- Andreas Müller wrote:
> When deleting the selected name again I now get another NPE:
Also the free text name is n... - 01:32 PM bug #9533 (Feedback): NPE when reusing name for new taxon
- When deleting the selected name again I now get another NPE:
~~~
last remote method : http://api.cybertaxonomy.or... - 09:18 AM bug #9533 (Resolved): NPE when reusing name for new taxon
- This is fixed, but should be released with an hotifx release.
Please review. - 08:00 AM bug #9533 (Closed): NPE when reusing name for new taxon
- Using an existing name for a new taxon results in a NPE because of a missing text in textfield for the name.
- 09:22 AM bug #9534 (New): Filtering of reference type does not work correctly
- When enter an 'a' into the drop down for the referencetype and clicking on 'Article' does not work.
- 12:20 AM bug #8857: NonUniqueObjectException when creating new taxon
- I fully removed saveNewTaxonNode now as it is not in use and is not really save. The createTaxonNode method can be us...
03/16/2021
- 01:51 PM bug #9527: Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]
- the regex is now complete according to the notation found on https://en.wikipedia.org/wiki/Consensus_sequence
- 12:14 PM bug #9531 (Resolved): Add Names in OriginalSpelling to the delete configuration
- this should be fixed, please review.
- 09:40 AM bug #9532 (In Progress): Check whether all data are loaded for NameEditor
- The loading of a taxon takes a lot of time, especially the supplemental data view needs several database calls. The p...
03/15/2021
- 02:22 PM bug #9527: Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]
- With the given uncertainties on additional information like brackets I suggest to use only soft validation (warning b...
- 02:19 PM bug #9527: Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]
- The given regex is not valid anymore for the extended findings we have now on the usage of brackets and Y (and maybe ...
- 12:58 PM bug #9527: Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]
- there was a related ticket already, I add it for discussion informations: #5057
- 10:48 AM bug #9527: Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]
- Andreas Müller wrote:
> Is there a reason for this requirment or is it only because we expect sequences to be like t... - 08:27 AM bug #9531 (Closed): Add Names in OriginalSpelling to the delete configuration
- mail AM:
Es ist so: Arenaria cespitosa Ehrh. hat nicht nur eine Nom. Source sondern ist auch original spelling für...
03/13/2021
- 05:37 AM bug #9529: Correct formatting for bibliographic in-reference separation
- It looks like we need to update the titleCaches after having this installed.
- 05:37 AM bug #9529: Correct formatting for bibliographic in-reference separation
- The abbrevCache seems to be missing the dot (in some cases?). See Cichorium endivia - Canary islands (Hansen ref with...
- 05:21 AM bug #9529: Correct formatting for bibliographic in-reference separation
- NadjaK:
ich bin auch für n-dash, und bei Büchern für die Variante mit Seitenzahlen, das ja auch der Willdenowia-St... - 04:34 AM bug #9529 (Resolved): Correct formatting for bibliographic in-reference separation
- Applied in changeset commit:cdmlib|a7601e2a3c182cbadfed17a9b33ac7c58417c01e.
- 04:15 AM bug #9529 (In Progress): Correct formatting for bibliographic in-reference separation
- 02:23 AM bug #9529 (Closed): Correct formatting for bibliographic in-reference separation
- AM:
Vorgeschlagen wurden von Norbert zumindest für Zeitschriften:
* Trennung nur per Punkt
Chenopodiastrum (... - 05:12 AM bug #8297 (Closed): Fix condensed distribution string for E+M
- 05:11 AM bug #8297: Fix condensed distribution string for E+M
- Code cleaned-up as far as time for this existed. A followup ticket with an open issue was created: #9526
- 05:09 AM bug #9525 (Closed): Namerelationship source label is missing sometimes
- Looks ok.
- 04:37 AM feature request #9530 (Closed): Add pages to bibliographic book sections
- for details see #9529
- 04:16 AM bug #6960 (In Progress): Improve reference cachestrategy
03/12/2021
- 04:32 PM task #9528 (Worksforme): synonymy: missplied names sensu with short authorship string
- Bei Misapplikationen werden im "sensu"-Teil sämtliche Autoren ohne Initialen aufgeführt. An dieser Stelle würde ein "...
- 03:45 PM bug #9526 (Resolved): Sort order in E+M distribution string should be strictly alphabetic
- This should be fixed. Eckhard, can you please review on test server (see link above) it it is ok
- 12:05 PM bug #9526 (Closed): Sort order in E+M distribution string should be strictly alphabetic
- Currently it is according to vocabulary (which is ordered alphabetically on same levels but ofcourse not for subareas...
- 03:32 PM bug #9527: Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]
- Is there a reason for this requirment or is it only because we expect sequences to be like this.
And why is it a Tax... - 02:59 PM bug #9527 (New): Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]
- for data to be entered or modified into the "Consensus Sequence 5' -> 3'" text-area the allowed characters, to be typ...
- 01:36 PM feature request #7599: treeView for specimen data in dataportal
- Open issues:
* the identifications should be clickable with link to name --> link url broken
* sequence data sh... - 01:27 PM feature request #9216: Derivate tree view should merge branches to multiple root elements into one branch
- This feature has only lower priority since we currently don't have any data with multiple originals
- 10:48 AM task #9458 (Closed): Consider lower zoom level as default
- 10:48 AM task #9458 (Resolved): Consider lower zoom level as default
- Applied in changeset commit:cdm-dataportal|7931750e5703e7ae42fc8fd9e24de10f98866d90.
- 10:20 AM bug #9213 (Closed): specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists
- this is already solved, see http://cichorieae.e-taxonomy.net/portal/cdm_dataportal/taxon/85176c77-e4b6-4899-a08b-e257...
03/11/2021
- 02:29 PM feature request #5682 (Closed): Implement condensed distribution string for Cuba
- I think this is fixed or requirements are not clear anymore. Therefore I close it.
- 12:56 PM bug #9525 (Resolved): Namerelationship source label is missing sometimes
- 12:55 PM bug #9525 (Closed): Namerelationship source label is missing sometimes
- For Namerelationships the label for the source is missing sometimes.
- 10:46 AM task #9524 (In Progress): Use non-model objects in database queries for getDistributionInfoFor
- The webservice for distribution infos is slow for larger distributions sets. This could be much improved if retrievin...
03/10/2021
- 05:22 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
- WGB:
dazu die Ergänzung, dass dies erst dann angegangen werden sollte, wenn die mit dem Placement vs. Secundum ver... - 02:34 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
- no further hung up incidents on the laptop of andreas kohlbecker.
Still frequent problems on other systems.
Here ... - 02:29 PM feature request #9521 (Closed): Fallback areas in textual representation should always stand alone
- I close this we can reopen if something does not work.
- 12:52 PM task #9513: "table to div regression": replace scriptler + dynamic parameter plugins
- last **TODO**
remove
* Dynamic Parameter Plug-in
* Scriptler Plug-in ---> see #9950 - 12:50 PM task #9513 (Resolved): "table to div regression": replace scriptler + dynamic parameter plugins
- 12:33 PM bug #9491 (Closed): Order of terms in not order relevant trees
- 12:31 PM feature request #9340 (Closed): Workflow support for secundum handling when making synonym a new accepted taxon
- The check of homotypic synonym secs is moved to a new ticket (#9523), this ticket can be closed.
- 12:25 PM bug #9520 (Closed): Taxonnode parent merge cascade leads to non-transactional behavior
- Seems to work as expected.
- 10:42 AM feature request #9523 (New): Check secundum of homotypic synonyms when changing accepted taxon to synonym
- When changing an accepted taxon to a synonym of another accepted taxon, actually only the secundum of the old accepte...
03/09/2021
- 06:29 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- For default preference "Keep when same"
Synonym to accepted, keep
syn ref1, homotypic syn ref2, parent ref3 -> ... - 10:00 AM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Andreas Müller wrote:
> If an accepted taxon is converted to a synonym (for an accepted taxon with same sec) its hom... - 05:05 PM feature request #9509 (Closed): IIIF manifest includes media source information
- 02:09 PM bug #9491 (Feedback): Order of terms in not order relevant trees
- Functionality and new code looks looks ok beside this and ticket can be closed.
- 12:13 PM bug #9491: Order of terms in not order relevant trees
- Can we rename FeatureTreeViewerComparator to TermTreeViewerComparator? "FeatureTree" is deprecated. Maybe we can run ...
- 11:57 AM bug #9491: Order of terms in not order relevant trees
- Can we delete the commented text in CreateDefinedTermOperation?
- 09:49 AM bug #9491 (Resolved): Order of terms in not order relevant trees
- Andreas Müller wrote:
> There was still an NPE when editing the title of a tree. I fixed this with a501f1e0 .
>
>... - 10:42 AM bug #9522: Workflow for reuse name
- As the current workflow creates incorrect data we should implement this soon.
- 09:28 AM bug #9522 (New): Workflow for reuse name
- when an already existing name is reused for a taxon or synonym the following steps should be done:
* check whether... - 10:08 AM task #9451 (Closed): Cache strategy for classifications is missing
- seems to work as expected.
- 09:59 AM bug #5670 (Closed): Refresh of Taxon Navigator
- Andreas Müller wrote:
> Seems to work.
> Only thing I realized, when creating a new taxon via TaxonNode assistant t... - 09:58 AM bug #9512 (Closed): Descriptions being created for individual associations in matrix should have description status "Individual association"
03/07/2021
- 03:31 PM EDIT Platform Etablierung report #9378: Meeting EDIT Platform documentation 2021-02-22
- Sollten wir das nicht lieber auf eine WikiSeite schreiben als in ein Ticket?
- 12:47 PM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
- All issues not related to areas with direct multiple parents are fixed with #9521. Now deeper hierarchies with multip...
- 12:25 PM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
- ERS:
mir scheint, Du hast die Probleme nun richtig erfasst und dargestellt.
Zur Krim:
Eigentlich ist gewünsc... - 12:04 PM task #8671: Distribution in E+M (BM) on different levels
- ERS (2020-06-23):
die „Distribution Aggregation“ verhält sich in diesem Fall wie gewollt: ein Unterareal vorhanden... - 11:39 AM feature request #9500 (In Progress): Allow removing certain distribution status from distribution publication
- ERS:
Für mich hört es sich plausibel an, für die Behandlung von Subarealen mit dem Status undefined besondere Reg... - 11:36 AM bug #8297: Fix condensed distribution string for E+M
- This should be fixed. Only code cleanup is needed.
- 11:36 AM bug #8297: Fix condensed distribution string for E+M
- Andreas Müller wrote:
> ... noch ein kleiner Nachtrag: bei der derzeitigen Implementierung kann es auch dazu kommen,... - 11:30 AM bug #8297: Fix condensed distribution string for E+M
- Andreas Müller wrote:
> An open issue:
>
> ... sollen im CondensedDistributionString für die Überareale jeweils n...
03/06/2021
- 01:50 PM feature request #9521 (Resolved): Fallback areas in textual representation should always stand alone
- Not yet implemented: show fallback areas only if they have sources (currently they are shown if there is an explicit ...
- 12:57 PM feature request #9521 (Closed): Fallback areas in textual representation should always stand alone
03/05/2021
- 11:48 PM bug #9520 (Resolved): Taxonnode parent merge cascade leads to non-transactional behavior
- This needs intensive reviewing as I removed cascading taxon node to parent.
I tested already that the problem itse... - 06:20 PM bug #9520 (Closed): Taxonnode parent merge cascade leads to non-transactional behavior
- If a taxon node is changed and saved the update result also contains its parent and also grandparents up to the class...
- 06:36 PM feature request #9340 (Feedback): Workflow support for secundum handling when making synonym a new accepted taxon
- If an accepted taxon is converted to a synonym (for an accepted taxon with same sec) its homotypic synonym having the...
- 06:26 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- When testing I sometimes (often at the very beginning after I adapted the test data) got very strange results like pu...
- 03:21 PM feature request #9340 (Resolved): Workflow support for secundum handling when making synonym a new accepted taxon
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > I have not checked but I guess that th... - 04:26 PM bug #9506 (Closed): Rights can not be selected for reuse
- This works now. Maybe the server was not restarted when I checked last time.
- 04:21 PM bug #8767 (Closed): Workflow support for publish flag
- Yes this can be closed.
- 03:17 PM bug #8767: Workflow support for publish flag
- create follow up ticket for the publish check of the whole homotypic group
- 03:15 PM bug #8767 (Resolved): Workflow support for publish flag
- I think we can close this ticket, I checked all operations mentioned above.
- 09:39 AM bug #8767: Workflow support for publish flag
- Now also MAN -> Synonym works as expected:
acc 1, MAN 0 => Syn 0 (OK)
acc 1, MAN 1 => Syn 1 (OK)
acc 0, MAN 0 =>... - 12:37 AM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > Tested MA... - 04:04 PM bug #5670 (Feedback): Refresh of Taxon Navigator
- Seems to work.
Only thing I realized, when creating a new taxon via TaxonNode assistant the navigator collapses afte... - 03:41 PM bug #5670 (Resolved): Refresh of Taxon Navigator
- OK, I will review those which work already.
- 03:37 PM bug #5670: Refresh of Taxon Navigator
- Andreas Müller wrote:
> What is about the other open issues which you did not move to the new ticket yet:
>
> * N... - 03:27 PM bug #5670 (Feedback): Refresh of Taxon Navigator
- What is about the other open issues which you did not move to the new ticket yet:
* New Taxon Node / Update Taxon ... - 02:39 PM bug #5670 (Closed): Refresh of Taxon Navigator
- create open issues ticket #9514
- 01:59 PM bug #5670: Refresh of Taxon Navigator
- I tested NameEditor save and swap and both work well.
Only minor question I have is: can we easily avoid refresh c... - 12:55 PM bug #5670: Refresh of Taxon Navigator
- Andreas Müller wrote:
> Can you please check the lists in the description if they are correct and complete?
>
> (... - 12:43 PM bug #5670 (Feedback): Refresh of Taxon Navigator
- Can you please check the lists in the description if they are correct and complete?
(I still have to wait for the ... - 12:33 PM bug #5670: Refresh of Taxon Navigator
- open issues can be taken from callhierarchy of WorkbenchEventConstant.REFRESH_NAVIGATOR
- 12:08 PM bug #5670: Refresh of Taxon Navigator
- Andreas Müller wrote:
> Now, when changing the name in NameEditor the new taxon is not rearranged within the parent ... - 12:07 PM bug #5670 (Resolved): Refresh of Taxon Navigator
- Applied in changeset commit:taxeditor|9f2b6bf28cb2c5ee2cd57937cbde483e929761c0.
- 11:58 AM bug #5670 (Feedback): Refresh of Taxon Navigator
- Now, when changing the name in NameEditor the new taxon is not rearranged within the parent taxon yet.
I think you m... - 03:47 PM feature request #9519 (New): Add posibilty to add IndividualAssociation descriptions in Facts View
- Currently it is not yet possible to set the status of a description manually in the details view. Needs to be discuss...
- 03:34 PM bug #9516: Check publish flag of all homotypic synonyms when moving
- As this is a follow up ticket we should implement it soon as it is strongly related to the original ticket.
- 03:18 PM bug #9516 (New): Check publish flag of all homotypic synonyms when moving
- see #8767
- 03:30 PM feature request #9514: Open issues for taxon navigator refresh
- We should try to handle this in the near future to finish this task which we started in 5.21.
- 02:38 PM feature request #9514 (New): Open issues for taxon navigator refresh
- * refresh of navigator only if titleCache of the name is changed.
* open the tree for the new position after move ta... - 03:22 PM feature request #9518 (Closed): Add symbol to descriptions having status individual association in facts view
- Similar to literatur descriptions.
Symbol as a first step can be taken from any symbol used in the specimen tree edi... - 03:18 PM feature request #9517 (New): Descriptions with status "IndividualsAssociation" should only support adding of features supporting IndividualAssociations
- Currently all allowed features can be added.
The problem exists in Facts View. - 03:10 PM feature request #9515 (Closed): Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- copied from #9512:
Probably more such descriptions are created by the ABCD import. Katja, can you please check if ... - 03:02 PM bug #9512 (Feedback): Descriptions being created for individual associations in matrix should have description status "Individual association"
- This works, though I just realized that the matrix creates such indAss very seldom as it is only relevant for specime...
- 11:19 AM bug #9512 (Resolved): Descriptions being created for individual associations in matrix should have description status "Individual association"
- Applied in changeset commit:cdmlib|8fea24a9b642e10a89b545ac04352bd582c9835c.
- 10:49 AM bug #9512 (Closed): Descriptions being created for individual associations in matrix should have description status "Individual association"
- 11:44 AM bug #7521 (Closed): refresh of taxonnavigator sometimes does not work for moving taxonnodes
- Seems to work now
- 11:07 AM task #9513: "table to div regression": replace scriptler + dynamic parameter plugins
- downgrading to v2.263 is not easily possible as this will require to downgrade a couple of plugins also
- 10:55 AM task #9513 (Closed): "table to div regression": replace scriptler + dynamic parameter plugins
- Due to the "table to div regression" the [Configure UI is completely broken after upgrade to 2.264](https://issues.je...
- 10:13 AM bug #9481 (Closed): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- Andreas Müller wrote:
> Works as expected. I did a minor code cleanup. Please check if you think it is correct and c... - 10:11 AM bug #9481 (Feedback): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- Works as expected. I did a minor code cleanup. Please check if you think it is correct and close ticket if yes.
03/04/2021
- 08:47 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Katja Luther wrote:
> Andreas Müller wrote:
> > I have not checked but I guess that the secundum of other synonyms ... - 08:36 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Andreas Müller wrote:
> I have not checked but I guess that the secundum of other synonyms in the homotypic group is... - 08:13 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- I have not checked but I guess that the secundum of other synonyms in the homotypic group is probably not checked yet...
- 07:59 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Andreas Müller wrote:
> I test all other preferences (except for default preference) for change "synonym to accepted... - 07:46 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- I test all other preferences (except for default preference) for change "synonym to accepted taxon" and "change taxon...
- 07:39 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Andreas Müller wrote:
> The preference says
>
> 
>
> Is it true that it is only for thes... - 07:36 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- The preference says
Is it true that it is only for these 2 operations or should we adapt... - 07:33 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Katja, can you please run the same type of tests for
* move synonym to another taxon
* move accepted to new pare... - 07:32 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Further tested change accepted to synonym (with default preference)
Old parent sec2, oldAcc null, newAcc sec1 => w... - 07:25 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Tested change synonym to accepted taxon (with default preference)
OldAcc sec1, oldSyn sec1, newParent sec1 => newA... - 06:46 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Tested change accepted to synonym (with default preference)
Old parent sec1, oldAcc sec1, newAcc sec1 => warning (... - 04:09 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Also the message seems to mention the old accepted taxon but I think finally we decided that here the old accepted ta...
- 04:07 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Tested: Syn => Acc
The dialogue title and the message seem to be mixed up, they should be... - 03:59 PM feature request #9340 (Feedback): Workflow support for secundum handling when making synonym a new accepted taxon
- Generally use se**c**undum not sekundum in German dialogues (and elsewhere) as secundum is Latin. I don't think there...
- 03:49 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Tested: Syn => MAN and back
In step 1 sec was deleted (OK)
In step 2 sec was added (taken from accepted) - (OK, ... - 08:45 PM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Tested MAN/ppSyn => Syn
> > >
> > >... - 08:40 PM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Tested change accepted to synonym
> >... - 08:37 PM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> Andreas Müller wrote:
> > Tested MAN/ppSyn => Syn
> >
> > acc 1, MAN 0 => Syn 0 (OK)
> > ... - 07:10 PM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> Andreas Müller wrote:
>
> > Katja, can you do the same check for "move accepted to new pare... - 07:04 PM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Katja, can you do the same check for "move accepted to new parent". I don't if this is alr... - 06:17 PM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Tested change accepted to synonym
> >
> > Old parent 1, old ac... - 06:06 PM bug #8767: Workflow support for publish flag
- Katja, can you do the same check for "move accepted to new parent". I don't if this is already fully fixed, committed...
- 06:04 PM bug #8767: Workflow support for publish flag
- Tested move synonym/homotypic group to another taxon
Old acc 1, old syn 1, new acc 1 => new syn 1 w/o warning (OK)... - 05:48 PM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Tested MAN/ppSyn => Syn
>
> acc 1, MAN 0 => Syn 0 (OK)
> acc 1, MAN 1 => Syn 0 (FALSE)
... - 05:44 PM bug #8767: Workflow support for publish flag
- change synonym to accepted taxon
Old acc 1, old syn 1, new parent 1 => new acc 1 w/o warning (OK)
Old acc 1, old ... - 05:35 PM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Tested change accepted to synonym
>
> Old parent 1, old acc 1, new acc 1 => new syn 0, w/... - 05:33 PM bug #8767: Workflow support for publish flag
- Tested change accepted to synonym
Old parent 1, old acc 1, new acc 1 => new syn 0, w/o warning (FALSE, should be 1... - 05:10 PM bug #8767: Workflow support for publish flag
- Tested MAN/ppSyn => Syn
acc 1, MAN 0 => Syn 0 (OK)
acc 1, MAN 1 => Syn 0 (FALSE)
acc 0, MAN 0 => Syn 0 (OK)
acc... - 05:00 PM bug #8767: Workflow support for publish flag
- Tested Syn => MAN/ppSyn
acc 1, syn 0 => MAN 0 (OK)
acc 0, syn 1 => MAN 1 (OK)
acc 0, syn 0 => MAN 0 (OK) - 04:17 PM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> For operations like swap I do not see the need to test for the parent if the old and the new a... - 04:10 PM bug #8767: Workflow support for publish flag
- For operations like swap I do not see the need to test for the parent if the old and the new accepted have the same p...
- 03:37 PM bug #8767: Workflow support for publish flag
- Katja, can you please test correct functionality for each of the above operations and leave a message in this ticket ...
- 03:35 PM bug #8767 (Feedback): Workflow support for publish flag
- Testing swap:
* if parent taxon has state 1 and old+new taxon state 2 no warning appears
* if warning appears it ... - 03:51 PM bug #9481: ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- fixed.
- 03:50 PM bug #9481 (Resolved): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- Applied in changeset commit:cdmlib|64c76cb2c3937cf979045741195fae0ade7013a6.
- 03:08 PM bug #9481 (Feedback): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- No exception anymore, but it looks like the descriptions are duplicated now.
I ran on Arenaria serpyllifolia Bourg... - 02:28 PM bug #7091 (Closed): Add uri field and abbreviatedText to Righs in supplemental data
- seems to work as expected.
- 11:36 AM bug #7091 (Resolved): Add uri field and abbreviatedText to Righs in supplemental data
- this should be fixed.
- 10:05 AM bug #7091: Add uri field and abbreviatedText to Righs in supplemental data
- Licences become more important in future (Chichorieae has such data) so we should try to implement it soon
- 02:25 PM bug #9506 (Feedback): Rights can not be selected for reuse
- Katja Luther wrote:
> Andreas Müller wrote:
> > We should also include abbrev and uri if data is not empty (see #70... - 02:20 PM bug #9506: Rights can not be selected for reuse
- Katja Luther wrote:
> Andreas Müller wrote:
> > Empty values are not handled correctly:
> >
> > : Rights can not be selected for reuse
- Andreas Müller wrote:
> We should also include abbrev and uri if data is not empty (see #7091)
this is fixed. - 11:08 AM bug #9506 (In Progress): Rights can not be selected for reuse
- Andreas Müller wrote:
> Empty values are not handled correctly:
>
> 
>
> I think empty or... - 10:12 AM bug #9506: Rights can not be selected for reuse
- Finally we could add a filter to search only on certain rights types. But this might be another ticket.
- 10:11 AM bug #9506: Rights can not be selected for reuse
- We should also include abbrev and uri if data is not empty (see #7091)
- 10:09 AM bug #9506 (Feedback): Rights can not be selected for reuse
- Empty values are not handled correctly:
I think empty or null values should not show up i... - 01:07 PM bug #9510: Improve label for descriptions created via DDS matrix
- ... ich sehe gerade, dass die obige Labeldiskussion v.a. fürs Portal gedacht war, dennoch vielleicht auch passend für...
- 01:03 PM bug #9510: Improve label for descriptions created via DDS matrix
- Auch das Label der Specimen description selber entspricht noch nicht ganz dem, wie wir es mal besprochen haben:
... - 10:51 AM bug #9510: Improve label for descriptions created via DDS matrix
- The above suggestion are only meant as first ideas. Please feel free to suggest/find better labels.
- 10:50 AM bug #9510 (In Progress): Improve label for descriptions created via DDS matrix
- The automatically created label for a new "literature" description is something like {name of DDS}: Factual data set ...
- 11:38 AM bug #8760: Presentation and linking of molecular data in specimen table too unclear
- A current working link: http://campanula.e-taxonomy.net/cdm_dataportal/taxon/2e3aa801-7307-409c-bd39-d825f5f1e031/spe...
- 11:01 AM feature request #9511 (New): Move specimens/individual associations for matrix into same description
- If one adds a new specimen description in the matrix for a specimen that is not yet attached as individuals associati...
- 10:35 AM bug #9488 (Closed): Show details of description in character matrix
- This works now.
- 10:01 AM bug #6688 (Duplicate): Rights do not show up in rights search if no text is given
- duplicates #9506
03/03/2021
- 06:51 PM feature request #9509: IIIF manifest includes media source information
- implemented, formatting of the output my need further improvement
- 06:49 PM feature request #9509 (Resolved): IIIF manifest includes media source information
- Applied in changeset commit:cdmlib|5a1bde2d875ebc302cae81e09f994cae51877b67.
- 06:23 PM feature request #9509 (Closed): IIIF manifest includes media source information
- source data of media entities need to be added to the IIIF manifests.
This need to be implemented into the `Manife... - 05:54 PM feature request #9508 (New): OpenID Connect 1.0 authentication with ORCID
- ORCID offers an OpenID Connect 1.0 (a simple identity layer on top of the OAuth 2.0 protocol) service which allows to...
- 02:24 PM bug #9488 (Resolved): Show details of description in character matrix
- Andreas Müller wrote:
> Adding a source was possible but I could not persist the change. After reopening the changes... - 02:01 PM bug #9506: Rights can not be selected for reuse
- is this already for review?
- 12:22 PM bug #9506: Rights can not be selected for reuse
- now the search is on text and agent.titlecache and the label contains {text} - {agent.titleCache} - {type.titleCache}
- 12:20 PM bug #9506 (Resolved): Rights can not be selected for reuse
- Applied in changeset commit:cdmlib|90f0f3376dce0188f40dad490274d666ad82c2c5.
- 11:30 AM bug #9481 (Resolved): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- yes please review
- 11:29 AM bug #9481: ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- is this for review?
- 10:38 AM feature request #9507: Add ratioTo structure to Character
- NK:
Es gibt eine Reihe von Properties, die für Relationen zwischen Strukturen genutzt werden und zu denen in unser... - 10:36 AM feature request #9507 (Closed): Add ratioTo structure to Character
- Some characters handle the ratio between two structures, e.g. length ratio between corolla and calyx.
For this we ... - 08:27 AM feature request #9473: Support moving images to new taxa similar to facts
- This is critical as we need it for the new media handling strategy
03/02/2021
- 11:10 PM bug #9506: Rights can not be selected for reuse
- The problem is probably that for copyrights usually only an agent and the rights type is given, but no text.
So the ... - 10:35 PM bug #9506 (Closed): Rights can not be selected for reuse
- The selection dialog for rights does not show any existing data even if "*" is entered.
This happened in the cypru... - 10:09 PM bug #9488 (Feedback): Show details of description in character matrix
- Adding a source was possible but I could not persist the change. After reopening the changes were missing.
This is... - 09:40 PM feature request #3816 (Closed): Create "Undefined" status and choose it for NULL status
- Fixed. The update script is handled in separat ticket #9505.
- 09:39 PM feature request #9505 (New): Set missing distribution status to "undefined"
- copied from #3816
Before, check which data are affected and think about if it is really necessary.
- 09:33 PM bug #9491 (Feedback): Order of terms in not order relevant trees
- There was still an NPE when editing the title of a tree. I fixed this with a501f1e0 .
It generally works. Only I d... - 09:21 PM bug #9504 (Closed): Changing term tree title is not persisted
- If I create a new term tree and change the title before saving the title is reset to the default title after saving
- 09:15 PM feature request #9499 (Closed): Make isAbsent editable in DetailsView
- This is fixed though "should be disabled for mangaged terms" is not yet implemented. But it seems that this is not ye...
- 03:18 PM feature request #9499 (Resolved): Make isAbsent editable in DetailsView
- Applied in changeset commit:taxeditor|a524e7d8a97c00b9274b767e73f75d0a47627da0.
- 02:11 PM feature request #9499 (Closed): Make isAbsent editable in DetailsView
- For PresenceAbsenceTerm the isAbsent attribute is not yet editable and visible.
As idInVoc (and others) editing sh... - 08:38 PM bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
- AM:
ich sehe gerade auf http://www.europlusmed.org/cdm_dataportal/taxon/6a8e85bd-5e52-4ae2-9444-99128c87a672, dass... - 08:19 PM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
- AM:
Problematisch sind derzeit ja noch die Fallback-Areale, die viele Hierarchiestufen haben oder überlappen. Also... - 07:31 PM feature request #9502 (Resolved): Implement subarea preference rule and fallback areas for areas with complex hierarchy
- #5050 defines the subarea preference rule and also describes implements it for areas Ju, Cz, IJ and LS which are rela...
- 08:17 PM feature request #9500: Allow removing certain distribution status from distribution publication
- AM:
Und noch etwas bezüglich undefined:
Im alten Portal werden diese Status ja auch grundsätzlich nicht mitbrüc... - 08:15 PM feature request #9500: Allow removing certain distribution status from distribution publication
- AM:
In einigen Fällen, und insbesondere in den Fällen, bei denen die Unterareale nur eine undefined Verbreitung ha... - 03:40 PM feature request #9500 (Feedback): Allow removing certain distribution status from distribution publication
- from #8858#note-14
An even better solution might be to use a term tree for filtering and ordering the distribution... - 08:14 PM bug #8297: Fix condensed distribution string for E+M
- An open issue:
... sollen im CondensedDistributionString für die Überareale jeweils nur die Unterarealstatus ausge... - 08:12 PM task #9501: Find inconsistent higher area distribution status data in E+M
- AM:
Ein ähnlicher Fall, der mir nicht ganz klar ist, ist der, wenn es für das Überareal einen Status mit höherer P... - 07:03 PM task #9501: Find inconsistent higher area distribution status data in E+M
- The results of the query were sent to ERS today.
- 07:03 PM task #9501 (New): Find inconsistent higher area distribution status data in E+M
- The distribution status of a higher area (area with subareas) should usually not have a higher status then the highes...
- 07:59 PM feature request #9484 (Rejected): Distinguish default hidden/fallback area handling from empty list of hidden/fallback area markers
- In #9502 it was decided that hidden and fallback areas should better be handled by term trees so the current ticket i...
- 07:58 PM feature request #9503 (Closed): Handle term tree of areas and distribution status for distributionInfo in dataportal
- This is blocked by #9500 and/or #9502.
See the description there for further information. - 07:51 PM bug #9486 (Duplicate): Fallback areas not handled in area hierarchy are not showing up correctly if subarea data exists
- This is more or less a duplicate for #9502.
- 07:45 PM feature request #3904 (Closed): EuroMed: Implement filtering rules for distributions
- All subtasks and related are closed. Open issues are handled in follow up tickets #9500 (for status) and #9502 (for a...
- 07:42 PM feature request #5050 (Closed): revise the subAreaPreference rule for filtering Distributions
- Generally this is fixed. The subarea preference is implemented for map creation. Some open issues with fallback areas...
- 07:33 PM task #8671 (Rejected): Distribution in E+M (BM) on different levels
- As the rule is clear that supra-area information should not be shown on maps as long as subarea information is avail...
- 07:10 PM bug #8670 (Closed): Unwanted distribution aggregation/display on 2 levels
- As there were no complaints about this issue anymore since the ticket was resolved I close it. Open new ticket for an...
- 03:41 PM bug #8858 (Closed): Ordering of distribution status 'undefined' is not correct in E+M
- The new implementation works as expected. The result is for Talinum paniculatum on test is "-● -Md(??M) [aAu(A) pAz(a...
- 01:36 PM bug #8858: Ordering of distribution status 'undefined' is not correct in E+M
- Applied in changeset commit:cdmlib|4dccf2d61ae938ff7638aa262de483068859fd3b.
- 01:34 PM bug #8858 (Resolved): Ordering of distribution status 'undefined' is not correct in E+M
- The reason why the first fix didn't work is that PresenceAbsenceTerm had it's own compareTo method, including an isPr...
- 02:15 PM bug #9475 (Closed): NameTypeDesignations for existing names in other nom acts can not be created
- 12:15 PM feature request #9494 (Closed): Improve UI: Selection of ranks in Name Editor
- closing as duplicate
- 09:36 AM bug #9483 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
- 09:36 AM feature request #8981 (Closed): Improve NameStatus in UI
- 09:33 AM feature request #9498 (Closed): Password Recovery, Registration and Login Dialog Tab fully functional
- this is needed for the cdm-vaadin login dialog tab "Password Recovery "
- 09:32 AM feature request #9497 (Closed): User self registration service
- this is needed for the cdm-vaadin login dialog tab "Register"
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