Activity

From 02/11/2021 to 03/12/2021

03/12/2021

04:32 PM task #9528 (Worksforme): synonymy: missplied names sensu with short authorship string: Bei Misapplikationen werden im "sensu"-Teil sämtliche Autoren ohne Initialen aufgeführt. An dieser Stelle würde ein "... Andreas Kohlbecker
03:45 PM bug #9526 (Resolved): Sort order in E+M distribution string should be strictly alphabetic: This should be fixed. Eckhard, can you please review on test server (see link above) it it is ok Andreas Müller
12:05 PM bug #9526 (Closed): Sort order in E+M distribution string should be strictly alphabetic: Currently it is according to vocabulary (which is ordered alphabetically on same levels but ofcourse not for subareas... Andreas Müller
03:32 PM bug #9527: Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]: Is there a reason for this requirment or is it only because we expect sequences to be like this.
And why is it a Tax... Andreas Müller
02:59 PM bug #9527 (New): Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]: for data to be entered or modified into the "Consensus Sequence 5' -> 3'" text-area the allowed characters, to be typ... Andreas Kohlbecker
01:36 PM feature request #7599: treeView for specimen data in dataportal: Open issues:
* the identifications should be clickable with link to name --> link url broken
* sequence data sh... Andreas Kohlbecker
01:27 PM feature request #9216: Derivate tree view should merge branches to multiple root elements into one branch: This feature has only lower priority since we currently don't have any data with multiple originals Andreas Kohlbecker
10:48 AM task #9458 (Closed): Consider lower zoom level as default: Andreas Kohlbecker
10:48 AM task #9458 (Resolved): Consider lower zoom level as default: Applied in changeset commit:cdm-dataportal|7931750e5703e7ae42fc8fd9e24de10f98866d90. Andreas Kohlbecker
10:20 AM bug #9213 (Closed): specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists: this is already solved, see http://cichorieae.e-taxonomy.net/portal/cdm_dataportal/taxon/85176c77-e4b6-4899-a08b-e257... Andreas Kohlbecker

03/11/2021

02:29 PM feature request #5682 (Closed): Implement condensed distribution string for Cuba: I think this is fixed or requirements are not clear anymore. Therefore I close it. Andreas Müller
12:56 PM bug #9525 (Resolved): Namerelationship source label is missing sometimes: Katja Luther
12:55 PM bug #9525 (Closed): Namerelationship source label is missing sometimes: For Namerelationships the label for the source is missing sometimes. Katja Luther
10:46 AM task #9524 (In Progress): Use non-model objects in database queries for getDistributionInfoFor: The webservice for distribution infos is slow for larger distributions sets. This could be much improved if retrievin... Andreas Müller

03/10/2021

05:22 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful: WGB:
dazu die Ergänzung, dass dies erst dann angegangen werden sollte, wenn die mit dem Placement vs. Secundum ver... Andreas Müller
02:34 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly: no further hung up incidents on the laptop of andreas kohlbecker.
Still frequent problems on other systems.
Here ... Andreas Kohlbecker
02:29 PM feature request #9521 (Closed): Fallback areas in textual representation should always stand alone: I close this we can reopen if something does not work. Andreas Müller
12:52 PM task #9513: "table to div regression": replace scriptler + dynamic parameter plugins: last **TODO**
remove
* Dynamic Parameter Plug-in
* Scriptler Plug-in ---> see #9950 Andreas Kohlbecker
12:50 PM task #9513 (Resolved): "table to div regression": replace scriptler + dynamic parameter plugins: Andreas Kohlbecker
12:33 PM bug #9491 (Closed): Order of terms in not order relevant trees: Katja Luther
12:31 PM feature request #9340 (Closed): Workflow support for secundum handling when making synonym a new accepted taxon: The check of homotypic synonym secs is moved to a new ticket (#9523), this ticket can be closed. Katja Luther
12:25 PM bug #9520 (Closed): Taxonnode parent merge cascade leads to non-transactional behavior: Seems to work as expected. Katja Luther
10:42 AM feature request #9523 (New): Check secundum of homotypic synonyms when changing accepted taxon to synonym: When changing an accepted taxon to a synonym of another accepted taxon, actually only the secundum of the old accepte... Katja Luther

03/09/2021

06:29 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: For default preference "Keep when same"
Synonym to accepted, keep
syn ref1, homotypic syn ref2, parent ref3 -> ... Katja Luther
10:00 AM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Andreas Müller wrote:
> If an accepted taxon is converted to a synonym (for an accepted taxon with same sec) its hom... Katja Luther
05:05 PM feature request #9509 (Closed): IIIF manifest includes media source information: Andreas Kohlbecker
02:09 PM bug #9491 (Feedback): Order of terms in not order relevant trees: Functionality and new code looks looks ok beside this and ticket can be closed. Andreas Müller
12:13 PM bug #9491: Order of terms in not order relevant trees: Can we rename FeatureTreeViewerComparator to TermTreeViewerComparator? "FeatureTree" is deprecated. Maybe we can run ... Andreas Müller
11:57 AM bug #9491: Order of terms in not order relevant trees: Can we delete the commented text in CreateDefinedTermOperation? Andreas Müller
09:49 AM bug #9491 (Resolved): Order of terms in not order relevant trees: Andreas Müller wrote:
> There was still an NPE when editing the title of a tree. I fixed this with a501f1e0 .
>
>... Katja Luther
10:42 AM bug #9522: Workflow for reuse name: As the current workflow creates incorrect data we should implement this soon. Andreas Müller
09:28 AM bug #9522 (New): Workflow for reuse name: when an already existing name is reused for a taxon or synonym the following steps should be done:
* check whether... Katja Luther
10:08 AM task #9451 (Closed): Cache strategy for classifications is missing: seems to work as expected. Katja Luther
09:59 AM bug #5670 (Closed): Refresh of Taxon Navigator: Andreas Müller wrote:
> Seems to work.
> Only thing I realized, when creating a new taxon via TaxonNode assistant t... Katja Luther
09:58 AM bug #9512 (Closed): Descriptions being created for individual associations in matrix should have description status "Individual association": Katja Luther

03/07/2021

03:31 PM EDIT Platform Etablierung report #9378: Meeting EDIT Platform documentation 2021-02-22: Sollten wir das nicht lieber auf eine WikiSeite schreiben als in ein Ticket? Andreas Müller
12:47 PM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy: All issues not related to areas with direct multiple parents are fixed with #9521. Now deeper hierarchies with multip... Andreas Müller
12:25 PM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy: ERS:
mir scheint, Du hast die Probleme nun richtig erfasst und dargestellt.
Zur Krim:
Eigentlich ist gewünsc... Andreas Müller
12:04 PM task #8671: Distribution in E+M (BM) on different levels: ERS (2020-06-23):
die „Distribution Aggregation“ verhält sich in diesem Fall wie gewollt: ein Unterareal vorhanden... Andreas Müller
11:39 AM feature request #9500 (In Progress): Allow removing certain distribution status from distribution publication: ERS:
Für mich hört es sich plausibel an, für die Behandlung von Subarealen mit dem Status undefined besondere Reg... Andreas Müller
11:36 AM bug #8297: Fix condensed distribution string for E+M: This should be fixed. Only code cleanup is needed. Andreas Müller
11:36 AM bug #8297: Fix condensed distribution string for E+M: Andreas Müller wrote:
> ... noch ein kleiner Nachtrag: bei der derzeitigen Implementierung kann es auch dazu kommen,... Andreas Müller
11:30 AM bug #8297: Fix condensed distribution string for E+M: Andreas Müller wrote:
> An open issue:
>
> ... sollen im CondensedDistributionString für die Überareale jeweils n... Andreas Müller

03/06/2021

01:50 PM feature request #9521 (Resolved): Fallback areas in textual representation should always stand alone: Not yet implemented: show fallback areas only if they have sources (currently they are shown if there is an explicit ... Andreas Müller
12:57 PM feature request #9521 (Closed): Fallback areas in textual representation should always stand alone: Andreas Müller

03/05/2021

11:48 PM bug #9520 (Resolved): Taxonnode parent merge cascade leads to non-transactional behavior: This needs intensive reviewing as I removed cascading taxon node to parent.
I tested already that the problem itse... Andreas Müller
06:20 PM bug #9520 (Closed): Taxonnode parent merge cascade leads to non-transactional behavior: If a taxon node is changed and saved the update result also contains its parent and also grandparents up to the class... Andreas Müller
06:36 PM feature request #9340 (Feedback): Workflow support for secundum handling when making synonym a new accepted taxon: If an accepted taxon is converted to a synonym (for an accepted taxon with same sec) its homotypic synonym having the... Andreas Müller
06:26 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: When testing I sometimes (often at the very beginning after I adapted the test data) got very strange results like pu... Andreas Müller
03:21 PM feature request #9340 (Resolved): Workflow support for secundum handling when making synonym a new accepted taxon: Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > I have not checked but I guess that th... Katja Luther
04:26 PM bug #9506 (Closed): Rights can not be selected for reuse: This works now. Maybe the server was not restarted when I checked last time. Andreas Müller
04:21 PM bug #8767 (Closed): Workflow support for publish flag: Yes this can be closed. Andreas Müller
03:17 PM bug #8767: Workflow support for publish flag: create follow up ticket for the publish check of the whole homotypic group Katja Luther
03:15 PM bug #8767 (Resolved): Workflow support for publish flag: I think we can close this ticket, I checked all operations mentioned above. Katja Luther
09:39 AM bug #8767: Workflow support for publish flag: Now also MAN -> Synonym works as expected:
acc 1, MAN 0 => Syn 0 (OK)
acc 1, MAN 1 => Syn 1 (OK)
acc 0, MAN 0 =>... Katja Luther
12:37 AM bug #8767: Workflow support for publish flag: Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > Tested MA... Katja Luther
04:04 PM bug #5670 (Feedback): Refresh of Taxon Navigator: Seems to work.
Only thing I realized, when creating a new taxon via TaxonNode assistant the navigator collapses afte... Andreas Müller
03:41 PM bug #5670 (Resolved): Refresh of Taxon Navigator: OK, I will review those which work already. Andreas Müller
03:37 PM bug #5670: Refresh of Taxon Navigator: Andreas Müller wrote:
> What is about the other open issues which you did not move to the new ticket yet:
>
> * N... Katja Luther
03:27 PM bug #5670 (Feedback): Refresh of Taxon Navigator: What is about the other open issues which you did not move to the new ticket yet:
* New Taxon Node / Update Taxon ... Andreas Müller
02:39 PM bug #5670 (Closed): Refresh of Taxon Navigator: create open issues ticket #9514 Katja Luther
01:59 PM bug #5670: Refresh of Taxon Navigator: I tested NameEditor save and swap and both work well.
Only minor question I have is: can we easily avoid refresh c... Andreas Müller
12:55 PM bug #5670: Refresh of Taxon Navigator: Andreas Müller wrote:
> Can you please check the lists in the description if they are correct and complete?
>
> (... Katja Luther
12:43 PM bug #5670 (Feedback): Refresh of Taxon Navigator: Can you please check the lists in the description if they are correct and complete?
(I still have to wait for the ... Andreas Müller
12:33 PM bug #5670: Refresh of Taxon Navigator: open issues can be taken from callhierarchy of WorkbenchEventConstant.REFRESH_NAVIGATOR Andreas Müller
12:08 PM bug #5670: Refresh of Taxon Navigator: Andreas Müller wrote:
> Now, when changing the name in NameEditor the new taxon is not rearranged within the parent ... Katja Luther
12:07 PM bug #5670 (Resolved): Refresh of Taxon Navigator: Applied in changeset commit:taxeditor|9f2b6bf28cb2c5ee2cd57937cbde483e929761c0. Katja Luther
11:58 AM bug #5670 (Feedback): Refresh of Taxon Navigator: Now, when changing the name in NameEditor the new taxon is not rearranged within the parent taxon yet.
I think you m... Andreas Müller
03:47 PM feature request #9519 (New): Add posibilty to add IndividualAssociation descriptions in Facts View: Currently it is not yet possible to set the status of a description manually in the details view. Needs to be discuss... Andreas Müller
03:34 PM bug #9516: Check publish flag of all homotypic synonyms when moving: As this is a follow up ticket we should implement it soon as it is strongly related to the original ticket. Andreas Müller
03:18 PM bug #9516 (New): Check publish flag of all homotypic synonyms when moving: see #8767 Katja Luther
03:30 PM feature request #9514: Open issues for taxon navigator refresh: We should try to handle this in the near future to finish this task which we started in 5.21. Andreas Müller
02:38 PM feature request #9514 (New): Open issues for taxon navigator refresh: * refresh of navigator only if titleCache of the name is changed.
* open the tree for the new position after move ta... Katja Luther
03:22 PM feature request #9518 (Closed): Add symbol to descriptions having status individual association in facts view: Similar to literatur descriptions.
Symbol as a first step can be taken from any symbol used in the specimen tree edi... Andreas Müller
03:18 PM feature request #9517 (New): Descriptions with status "IndividualsAssociation" should only support adding of features supporting IndividualAssociations: Currently all allowed features can be added.
The problem exists in Facts View. Andreas Müller
03:10 PM feature request #9515 (Closed): Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import: copied from #9512:
Probably more such descriptions are created by the ABCD import. Katja, can you please check if ... Katja Luther
03:02 PM bug #9512 (Feedback): Descriptions being created for individual associations in matrix should have description status "Individual association": This works, though I just realized that the matrix creates such indAss very seldom as it is only relevant for specime... Andreas Müller
11:19 AM bug #9512 (Resolved): Descriptions being created for individual associations in matrix should have description status "Individual association": Applied in changeset commit:cdmlib|8fea24a9b642e10a89b545ac04352bd582c9835c. Katja Luther
10:49 AM bug #9512 (Closed): Descriptions being created for individual associations in matrix should have description status "Individual association": Andreas Müller
11:44 AM bug #7521 (Closed): refresh of taxonnavigator sometimes does not work for moving taxonnodes: Seems to work now Andreas Müller
11:07 AM task #9513: "table to div regression": replace scriptler + dynamic parameter plugins: downgrading to v2.263 is not easily possible as this will require to downgrade a couple of plugins also Andreas Kohlbecker
10:55 AM task #9513 (Closed): "table to div regression": replace scriptler + dynamic parameter plugins: Due to the "table to div regression" the [Configure UI is completely broken after upgrade to 2.264](https://issues.je... Andreas Kohlbecker
10:13 AM bug #9481 (Closed): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset: Andreas Müller wrote:
> Works as expected. I did a minor code cleanup. Please check if you think it is correct and c... Katja Luther
10:11 AM bug #9481 (Feedback): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset: Works as expected. I did a minor code cleanup. Please check if you think it is correct and close ticket if yes. Andreas Müller

03/04/2021

08:47 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Katja Luther wrote:
> Andreas Müller wrote:
> > I have not checked but I guess that the secundum of other synonyms ... Andreas Müller
08:36 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Andreas Müller wrote:
> I have not checked but I guess that the secundum of other synonyms in the homotypic group is... Katja Luther
08:13 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: I have not checked but I guess that the secundum of other synonyms in the homotypic group is probably not checked yet... Andreas Müller
07:59 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Andreas Müller wrote:
> I test all other preferences (except for default preference) for change "synonym to accepted... Andreas Müller
07:46 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: I test all other preferences (except for default preference) for change "synonym to accepted taxon" and "change taxon... Andreas Müller
07:39 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Andreas Müller wrote:
> The preference says
>
> ![](picture937-1.png)
>
> Is it true that it is only for thes... Katja Luther
07:36 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: The preference says
![](picture937-1.png)
Is it true that it is only for these 2 operations or should we adapt... Andreas Müller
07:33 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Katja, can you please run the same type of tests for
* move synonym to another taxon
* move accepted to new pare... Andreas Müller
07:32 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Further tested change accepted to synonym (with default preference)
Old parent sec2, oldAcc null, newAcc sec1 => w... Andreas Müller
07:25 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Tested change synonym to accepted taxon (with default preference)
OldAcc sec1, oldSyn sec1, newParent sec1 => newA... Andreas Müller
06:46 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Tested change accepted to synonym (with default preference)
Old parent sec1, oldAcc sec1, newAcc sec1 => warning (... Andreas Müller
04:09 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Also the message seems to mention the old accepted taxon but I think finally we decided that here the old accepted ta... Andreas Müller
04:07 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Tested: Syn => Acc
![](picture023-1.png)
The dialogue title and the message seem to be mixed up, they should be... Andreas Müller
03:59 PM feature request #9340 (Feedback): Workflow support for secundum handling when making synonym a new accepted taxon: Generally use se**c**undum not sekundum in German dialogues (and elsewhere) as secundum is Latin. I don't think there... Andreas Müller
03:49 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon: Tested: Syn => MAN and back
In step 1 sec was deleted (OK)
In step 2 sec was added (taken from accepted) - (OK, ... Andreas Müller
08:45 PM bug #8767: Workflow support for publish flag: Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Tested MAN/ppSyn => Syn
> > >
> > >... Katja Luther
08:40 PM bug #8767: Workflow support for publish flag: Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Tested change accepted to synonym
> >... Andreas Müller
08:37 PM bug #8767: Workflow support for publish flag: Katja Luther wrote:
> Andreas Müller wrote:
> > Tested MAN/ppSyn => Syn
> >
> > acc 1, MAN 0 => Syn 0 (OK)
> > ... Andreas Müller
07:10 PM bug #8767: Workflow support for publish flag: Katja Luther wrote:
> Andreas Müller wrote:
>
> > Katja, can you do the same check for "move accepted to new pare... Katja Luther
07:04 PM bug #8767: Workflow support for publish flag: Andreas Müller wrote:
> Katja, can you do the same check for "move accepted to new parent". I don't if this is alr... Katja Luther
06:17 PM bug #8767: Workflow support for publish flag: Andreas Müller wrote:
> Andreas Müller wrote:
> > Tested change accepted to synonym
> >
> > Old parent 1, old ac... Katja Luther
06:06 PM bug #8767: Workflow support for publish flag: Katja, can you do the same check for "move accepted to new parent". I don't if this is already fully fixed, committed... Andreas Müller
06:04 PM bug #8767: Workflow support for publish flag: Tested move synonym/homotypic group to another taxon
Old acc 1, old syn 1, new acc 1 => new syn 1 w/o warning (OK)... Andreas Müller
05:48 PM bug #8767: Workflow support for publish flag: Andreas Müller wrote:
> Tested MAN/ppSyn => Syn
>
> acc 1, MAN 0 => Syn 0 (OK)
> acc 1, MAN 1 => Syn 0 (FALSE)
... Katja Luther
05:44 PM bug #8767: Workflow support for publish flag: change synonym to accepted taxon
Old acc 1, old syn 1, new parent 1 => new acc 1 w/o warning (OK)
Old acc 1, old ... Andreas Müller
05:35 PM bug #8767: Workflow support for publish flag: Andreas Müller wrote:
> Tested change accepted to synonym
>
> Old parent 1, old acc 1, new acc 1 => new syn 0, w/... Andreas Müller
05:33 PM bug #8767: Workflow support for publish flag: Tested change accepted to synonym
Old parent 1, old acc 1, new acc 1 => new syn 0, w/o warning (FALSE, should be 1... Andreas Müller
05:10 PM bug #8767: Workflow support for publish flag: Tested MAN/ppSyn => Syn
acc 1, MAN 0 => Syn 0 (OK)
acc 1, MAN 1 => Syn 0 (FALSE)
acc 0, MAN 0 => Syn 0 (OK)
acc... Andreas Müller
05:00 PM bug #8767: Workflow support for publish flag: Tested Syn => MAN/ppSyn
acc 1, syn 0 => MAN 0 (OK)
acc 0, syn 1 => MAN 1 (OK)
acc 0, syn 0 => MAN 0 (OK) Andreas Müller
04:17 PM bug #8767: Workflow support for publish flag: Katja Luther wrote:
> For operations like swap I do not see the need to test for the parent if the old and the new a... Andreas Müller
04:10 PM bug #8767: Workflow support for publish flag: For operations like swap I do not see the need to test for the parent if the old and the new accepted have the same p... Katja Luther
03:37 PM bug #8767: Workflow support for publish flag: Katja, can you please test correct functionality for each of the above operations and leave a message in this ticket ... Andreas Müller
03:35 PM bug #8767 (Feedback): Workflow support for publish flag: Testing swap:
* if parent taxon has state 1 and old+new taxon state 2 no warning appears
* if warning appears it ... Andreas Müller
03:51 PM bug #9481: ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset: fixed. Katja Luther
03:50 PM bug #9481 (Resolved): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset: Applied in changeset commit:cdmlib|64c76cb2c3937cf979045741195fae0ade7013a6. Katja Luther
03:08 PM bug #9481 (Feedback): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset: No exception anymore, but it looks like the descriptions are duplicated now.
I ran on Arenaria serpyllifolia Bourg... Andreas Müller
02:28 PM bug #7091 (Closed): Add uri field and abbreviatedText to Righs in supplemental data: seems to work as expected. Andreas Müller
11:36 AM bug #7091 (Resolved): Add uri field and abbreviatedText to Righs in supplemental data: this should be fixed. Katja Luther
10:05 AM bug #7091: Add uri field and abbreviatedText to Righs in supplemental data: Licences become more important in future (Chichorieae has such data) so we should try to implement it soon Andreas Müller
02:25 PM bug #9506 (Feedback): Rights can not be selected for reuse: Katja Luther wrote:
> Andreas Müller wrote:
> > We should also include abbrev and uri if data is not empty (see #70... Andreas Müller
02:20 PM bug #9506: Rights can not be selected for reuse: Katja Luther wrote:
> Andreas Müller wrote:
> > Empty values are not handled correctly:
> >
> > ![](picture205-1... Andreas Müller
11:20 AM bug #9506 (Resolved): Rights can not be selected for reuse: Andreas Müller wrote:
> We should also include abbrev and uri if data is not empty (see #7091)
this is fixed. Katja Luther
11:08 AM bug #9506 (In Progress): Rights can not be selected for reuse: Andreas Müller wrote:
> Empty values are not handled correctly:
>
> ![](picture205-1.png)
>
> I think empty or... Katja Luther
10:12 AM bug #9506: Rights can not be selected for reuse: Finally we could add a filter to search only on certain rights types. But this might be another ticket. Andreas Müller
10:11 AM bug #9506: Rights can not be selected for reuse: We should also include abbrev and uri if data is not empty (see #7091) Andreas Müller
10:09 AM bug #9506 (Feedback): Rights can not be selected for reuse: Empty values are not handled correctly:
![](picture205-1.png)
I think empty or null values should not show up i... Andreas Müller
01:07 PM bug #9510: Improve label for descriptions created via DDS matrix: ... ich sehe gerade, dass die obige Labeldiskussion v.a. fürs Portal gedacht war, dennoch vielleicht auch passend für... Andreas Müller
01:03 PM bug #9510: Improve label for descriptions created via DDS matrix: Auch das Label der Specimen description selber entspricht noch nicht ganz dem, wie wir es mal besprochen haben:
... Andreas Müller
10:51 AM bug #9510: Improve label for descriptions created via DDS matrix: The above suggestion are only meant as first ideas. Please feel free to suggest/find better labels. Andreas Müller
10:50 AM bug #9510 (In Progress): Improve label for descriptions created via DDS matrix: The automatically created label for a new "literature" description is something like {name of DDS}: Factual data set ... Andreas Müller
11:38 AM bug #8760: Presentation and linking of molecular data in specimen table too unclear: A current working link: http://campanula.e-taxonomy.net/cdm_dataportal/taxon/2e3aa801-7307-409c-bd39-d825f5f1e031/spe... Andreas Müller
11:01 AM feature request #9511 (New): Move specimens/individual associations for matrix into same description: If one adds a new specimen description in the matrix for a specimen that is not yet attached as individuals associati... Andreas Müller
10:35 AM bug #9488 (Closed): Show details of description in character matrix: This works now. Andreas Müller
10:01 AM bug #6688 (Duplicate): Rights do not show up in rights search if no text is given: duplicates #9506 Andreas Müller

03/03/2021

06:51 PM feature request #9509: IIIF manifest includes media source information: implemented, formatting of the output my need further improvement Andreas Kohlbecker
06:49 PM feature request #9509 (Resolved): IIIF manifest includes media source information: Applied in changeset commit:cdmlib|5a1bde2d875ebc302cae81e09f994cae51877b67. Andreas Kohlbecker
06:23 PM feature request #9509 (Closed): IIIF manifest includes media source information: source data of media entities need to be added to the IIIF manifests.
This need to be implemented into the `Manife... Andreas Kohlbecker
05:54 PM feature request #9508 (New): OpenID Connect 1.0 authentication with ORCID: ORCID offers an OpenID Connect 1.0 (a simple identity layer on top of the OAuth 2.0 protocol) service which allows to... Andreas Kohlbecker
02:24 PM bug #9488 (Resolved): Show details of description in character matrix: Andreas Müller wrote:
> Adding a source was possible but I could not persist the change. After reopening the changes... Katja Luther
02:01 PM bug #9506: Rights can not be selected for reuse: is this already for review? Andreas Müller
12:22 PM bug #9506: Rights can not be selected for reuse: now the search is on text and agent.titlecache and the label contains {text} - {agent.titleCache} - {type.titleCache} Katja Luther
12:20 PM bug #9506 (Resolved): Rights can not be selected for reuse: Applied in changeset commit:cdmlib|90f0f3376dce0188f40dad490274d666ad82c2c5. Katja Luther
11:30 AM bug #9481 (Resolved): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset: yes please review Katja Luther
11:29 AM bug #9481: ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset: is this for review? Andreas Müller
10:38 AM feature request #9507: Add ratioTo structure to Character: NK:
Es gibt eine Reihe von Properties, die für Relationen zwischen Strukturen genutzt werden und zu denen in unser... Andreas Müller
10:36 AM feature request #9507 (Closed): Add ratioTo structure to Character: Some characters handle the ratio between two structures, e.g. length ratio between corolla and calyx.
For this we ... Andreas Müller
08:27 AM feature request #9473: Support moving images to new taxa similar to facts: This is critical as we need it for the new media handling strategy Andreas Müller

03/02/2021

11:10 PM bug #9506: Rights can not be selected for reuse: The problem is probably that for copyrights usually only an agent and the rights type is given, but no text.
So the ... Andreas Müller
10:35 PM bug #9506 (Closed): Rights can not be selected for reuse: The selection dialog for rights does not show any existing data even if "*" is entered.
This happened in the cypru... Andreas Müller
10:09 PM bug #9488 (Feedback): Show details of description in character matrix: Adding a source was possible but I could not persist the change. After reopening the changes were missing.
This is... Andreas Müller
09:40 PM feature request #3816 (Closed): Create "Undefined" status and choose it for NULL status: Fixed. The update script is handled in separat ticket #9505. Andreas Müller
09:39 PM feature request #9505 (New): Set missing distribution status to "undefined": copied from #3816
Before, check which data are affected and think about if it is really necessary.
Andreas Müller
09:33 PM bug #9491 (Feedback): Order of terms in not order relevant trees: There was still an NPE when editing the title of a tree. I fixed this with a501f1e0 .
It generally works. Only I d... Andreas Müller
09:21 PM bug #9504 (Closed): Changing term tree title is not persisted: If I create a new term tree and change the title before saving the title is reset to the default title after saving Andreas Müller
09:15 PM feature request #9499 (Closed): Make isAbsent editable in DetailsView: This is fixed though "should be disabled for mangaged terms" is not yet implemented. But it seems that this is not ye... Andreas Müller
03:18 PM feature request #9499 (Resolved): Make isAbsent editable in DetailsView: Applied in changeset commit:taxeditor|a524e7d8a97c00b9274b767e73f75d0a47627da0. Katja Luther
02:11 PM feature request #9499 (Closed): Make isAbsent editable in DetailsView: For PresenceAbsenceTerm the isAbsent attribute is not yet editable and visible.
As idInVoc (and others) editing sh... Andreas Müller
08:38 PM bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference: AM:
ich sehe gerade auf http://www.europlusmed.org/cdm_dataportal/taxon/6a8e85bd-5e52-4ae2-9444-99128c87a672, dass... Andreas Müller
08:19 PM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy: AM:
Problematisch sind derzeit ja noch die Fallback-Areale, die viele Hierarchiestufen haben oder überlappen. Also... Andreas Müller
07:31 PM feature request #9502 (Resolved): Implement subarea preference rule and fallback areas for areas with complex hierarchy: #5050 defines the subarea preference rule and also describes implements it for areas Ju, Cz, IJ and LS which are rela... Andreas Müller
08:17 PM feature request #9500: Allow removing certain distribution status from distribution publication: AM:
Und noch etwas bezüglich undefined:
Im alten Portal werden diese Status ja auch grundsätzlich nicht mitbrüc... Andreas Müller
08:15 PM feature request #9500: Allow removing certain distribution status from distribution publication: AM:
In einigen Fällen, und insbesondere in den Fällen, bei denen die Unterareale nur eine undefined Verbreitung ha... Andreas Müller
03:40 PM feature request #9500 (Feedback): Allow removing certain distribution status from distribution publication: from #8858#note-14
An even better solution might be to use a term tree for filtering and ordering the distribution... Andreas Müller
08:14 PM bug #8297: Fix condensed distribution string for E+M: An open issue:
... sollen im CondensedDistributionString für die Überareale jeweils nur die Unterarealstatus ausge... Andreas Müller
08:12 PM task #9501: Find inconsistent higher area distribution status data in E+M: AM:
Ein ähnlicher Fall, der mir nicht ganz klar ist, ist der, wenn es für das Überareal einen Status mit höherer P... Andreas Müller
07:03 PM task #9501: Find inconsistent higher area distribution status data in E+M: The results of the query were sent to ERS today. Andreas Müller
07:03 PM task #9501 (New): Find inconsistent higher area distribution status data in E+M: The distribution status of a higher area (area with subareas) should usually not have a higher status then the highes... Andreas Müller
07:59 PM feature request #9484 (Rejected): Distinguish default hidden/fallback area handling from empty list of hidden/fallback area markers: In #9502 it was decided that hidden and fallback areas should better be handled by term trees so the current ticket i... Andreas Müller
07:58 PM feature request #9503 (Closed): Handle term tree of areas and distribution status for distributionInfo in dataportal: This is blocked by #9500 and/or #9502.
See the description there for further information. Andreas Müller
07:51 PM bug #9486 (Duplicate): Fallback areas not handled in area hierarchy are not showing up correctly if subarea data exists: This is more or less a duplicate for #9502. Andreas Müller
07:45 PM feature request #3904 (Closed): EuroMed: Implement filtering rules for distributions: All subtasks and related are closed. Open issues are handled in follow up tickets #9500 (for status) and #9502 (for a... Andreas Müller
07:42 PM feature request #5050 (Closed): revise the subAreaPreference rule for filtering Distributions: Generally this is fixed. The subarea preference is implemented for map creation. Some open issues with fallback areas... Andreas Müller
07:33 PM task #8671 (Rejected): Distribution in E+M (BM) on different levels: As the rule is clear that supra-area information should not be shown on maps as long as subarea information is avail... Andreas Müller
07:10 PM bug #8670 (Closed): Unwanted distribution aggregation/display on 2 levels: As there were no complaints about this issue anymore since the ticket was resolved I close it. Open new ticket for an... Andreas Müller
03:41 PM bug #8858 (Closed): Ordering of distribution status 'undefined' is not correct in E+M: The new implementation works as expected. The result is for Talinum paniculatum on test is "-● -Md(??M) [aAu(A) pAz(a... Andreas Müller
01:36 PM bug #8858: Ordering of distribution status 'undefined' is not correct in E+M: Applied in changeset commit:cdmlib|4dccf2d61ae938ff7638aa262de483068859fd3b. Andreas Müller
01:34 PM bug #8858 (Resolved): Ordering of distribution status 'undefined' is not correct in E+M: The reason why the first fix didn't work is that PresenceAbsenceTerm had it's own compareTo method, including an isPr... Andreas Müller
02:15 PM bug #9475 (Closed): NameTypeDesignations for existing names in other nom acts can not be created: Andreas Kohlbecker
12:15 PM feature request #9494 (Closed): Improve UI: Selection of ranks in Name Editor: closing as duplicate Andreas Kohlbecker
09:36 AM bug #9483 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank: Andreas Kohlbecker
09:36 AM feature request #8981 (Closed): Improve NameStatus in UI: Andreas Kohlbecker
09:33 AM feature request #9498 (Closed): Password Recovery, Registration and Login Dialog Tab fully functional: this is needed for the cdm-vaadin login dialog tab "Password Recovery " Andreas Kohlbecker
09:32 AM feature request #9497 (Closed): User self registration service: this is needed for the cdm-vaadin login dialog tab "Register" Andreas Kohlbecker

03/01/2021

10:10 PM feature request #9496 (New): Handling fossil taxa: unsure how to do this.
PhycoBank need a "fossil" flag.
Where to place this?
In databases, a name is flaged as f... Wolf-Henning Kusber
10:06 PM feature request #9495 (New): Add eISSN and eISBN fields if a publication is hard copy and electronic: ISSN should be supplemented by a eISSN field
ISBN should be supplemented by a eISBN field
Field name to be discus... Wolf-Henning Kusber
10:01 PM feature request #9494 (Closed): Improve UI: Selection of ranks in Name Editor: The normal usecase is that 95% of name registrations are using just 5 ranks.
Some ranks in the selection are irrelev... Wolf-Henning Kusber
09:46 PM bug #9493 (New): Duplicate of species epithet when an existing species name is used for typification: After selection of an existing species name for typification, the selection of species epithets in the Name editor sh... Wolf-Henning Kusber
07:50 PM feature request #9492: Improve NameStatus in UI - new: "Icn Shenzhen 2017" is not needed for PhycoBank
ICN is not the title
the year of publication is 2018
This is a... Wolf-Henning Kusber
07:19 PM feature request #9492 (New): Improve NameStatus in UI - new: Follow up zu #8981
Currently the fields are shown:
Status type // Reference // Reference detail // Rule considere... Wolf-Henning Kusber
07:21 PM feature request #8981: Improve NameStatus in UI: This ticket can be closed.
new ticket: #9492 Wolf-Henning Kusber
06:40 PM bug #9491 (Resolved): Order of terms in not order relevant trees: Changed to client side ordering because the server does not know about the preference "Show Id in Vocabulary" for the... Katja Luther
05:01 PM bug #9491 (Closed): Order of terms in not order relevant trees: The order of not order relevant trees in term tree editors should be alphabetic. Katja Luther
06:20 PM bug #9475: NameTypeDesignations for existing names in other nom acts can not be created: The name type section works for new genera names as well as for expisting names as expected.
The recorded error was ... Wolf-Henning Kusber
04:06 PM bug #9475: NameTypeDesignations for existing names in other nom acts can not be created: I cant see any problem.
Here you can see me choosing the section (non sense data) of the typifying authors:
![]... Andreas Kohlbecker
05:58 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank: Trinominals can be created and stored. If this is due to #9483 this ticket can be closed. Wolf-Henning Kusber
04:50 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank: new ticket for possibly better solution #9490 Andreas Kohlbecker
03:11 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank: Hi Henning, this issue can be reviewed again. Andreas Kohlbecker
03:08 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank: Usually we are passing initStrategies to the service methods in order to initialize associated entities. In this case... Andreas Kohlbecker
05:50 PM bug #9485 (Closed): TaxonNamePopupEditor: StackOverflow on selecting ICN reference: Andreas Kohlbecker
05:43 PM bug #9485: TaxonNamePopupEditor: StackOverflow on selecting ICN reference: works as expected, ticket can be closed. Wolf-Henning Kusber
10:38 AM bug #9485 (Resolved): TaxonNamePopupEditor: StackOverflow on selecting ICN reference: Applied in changeset commit:cdm-vaadin|3035e8761cb98d17cd8c2874305069953d656310. Andreas Kohlbecker
08:23 AM bug #9485 (Closed): TaxonNamePopupEditor: StackOverflow on selecting ICN reference: Selection of a ICN reference causes an error

Name editor, new name goto nom.inval., select nom.inval.
Sele... Andreas Kohlbecker
05:04 PM bug #9488 (Resolved): Show details of description in character matrix: this should be fixed, please review Katja Luther
04:09 PM bug #9488 (Closed): Show details of description in character matrix: mail NK:
wenn ich in der Matrix mit dem Kontext-Menu zu einem Taxon "Create literature description" hinzufüge, bek... Katja Luther
04:51 PM bug #8312 (Closed): Test, fix, improve and run Transmission engine for E+M: This should be fixed with the implementation of transmission engine and following unified description aggregation as ... Andreas Müller
04:50 PM task #9490 (Closed): avoid rank entity in TaxonNameParts: ... vielleicht kann man den auch loswerden .... rankSpecificNamePart
kann man auch sofort bei der Bildung des DTO a... Andreas Kohlbecker
04:43 PM feature request #2625 (Closed): [E+M Overview] Data aggregation functionalities for E+M (TransmissionEngine): This should be fixed with the transmission engine implementations (see subtasks) and with the implementation of descr... Andreas Müller
04:12 PM bug #9489 (New): Fix header of character matrix for hierarchical characters: mail NK:
Matrix header: für den Matrix header in der obersten Hierarchie-Ebene, also 1. Spaltenüberschiriftenzeile... Katja Luther
04:09 PM bug #9470 (Closed): CollectionDTO constructor prevent from circles: Andreas Kohlbecker
03:24 PM feature request #9487 (New): Split state (and/or other big) vocabularies: mail NK:
Das Handling großer Vokabulare (States!) ist immer noch recht mühselig, wegen langer Lade- und Speicherzeit... Katja Luther
03:18 PM bug #9476 (Closed): SpecimenTypeDesignations for existing names in other nom acts can not be created: Andreas Kohlbecker
02:19 PM bug #8310 (Closed): Issues to solve in E+M shapefile: I think generally we can close this ticket. Open and new issues can be handled in separate tickets like #9367. Open i... Andreas Müller
12:51 PM bug #8310: Issues to solve in E+M shapefile: There is another open issue reported in #9367 Andreas Müller
02:08 PM bug #4409: fallback areas are not adressable in the shape file: Andreas Müller wrote:
> This seems to be fully fixed except for the Baltic states issue handled in #9367. TCS is now... Andreas Müller
01:25 PM bug #4409 (Closed): fallback areas are not adressable in the shape file: This seems to be fully fixed except for the Baltic states issue handled in #9367. TCS is now shown as 1 area if no su... Andreas Müller
11:05 AM bug #4409 (Resolved): fallback areas are not adressable in the shape file: Andreas Müller wrote:
> This should be fixed now. Either with #8858 or already before. Open issues are otherwise han... Andreas Müller
10:59 AM bug #4409 (Closed): fallback areas are not adressable in the shape file: This should be fixed now. Either with #8858 or already before. Open issues are otherwise handled in #8297 and related... Andreas Müller
02:05 PM bug #9486 (Duplicate): Fallback areas not handled in area hierarchy are not showing up correctly if subarea data exists: followup from #4409
In #4409 correct handling of fallback areas like Ju, Cz, IJ and LS in maps have been fixed. Un... Andreas Müller
01:53 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly: log from a hangup:
~~~
Mar 01 13:40:35 edit-community systemd[1]: Starting user-0.slice.
Mar 01 13:40:35 edit-co... Andreas Kohlbecker
01:49 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly: hung up still happen
attempt to find the cause by more loggin by logging the post-receive script execution with sy... Andreas Kohlbecker
01:13 PM bug #9478 (Closed): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation: no regression occurs in the case described in #7245
no duplicate of #8249
and fully solved Andreas Kohlbecker
11:33 AM bug #9480 (Closed): SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit: Andreas Kohlbecker
09:50 AM bug #8297: Fix condensed distribution string for E+M: AM:
auf introduced: doubtfully introduced (perhaps cultivated only) bist du noch nicht explizit eingegangen in de... Andreas Müller

02/27/2021

08:27 AM bug #8297 (Resolved): Fix condensed distribution string for E+M: This should be fixed now and can be reviewed on test or on production after the next release Andreas Müller
08:25 AM bug #8858 (Closed): Ordering of distribution status 'undefined' is not correct in E+M: Andreas Müller wrote:
> Another solution is implementing #3816
This solution finally has been implemented. The st... Andreas Müller

02/17/2021

12:31 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog: If this is in progress should we move it to current milestone? Andreas Müller
12:31 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog: For existing images we need the delete dialog that is true. I have not checked how the current dialog looks like but ... Andreas Müller
12:25 PM bug #8198 (In Progress): Deleting an image gallery from image gallery view shows wrong configuration dialog: Katja Luther
10:03 AM bug #8297: Fix condensed distribution string for E+M: Diskussion mit AK über handling des CondensedDistributionString im Portal:
Derzeit werden Teile des Strings hardco... Andreas Müller
09:09 AM bug #8297 (In Progress): Fix condensed distribution string for E+M: AM:
Wenn die Subareale beide z.B. indigenous sind, aber unterschiedliche Status haben, sollen die Hauptareale dann... Andreas Müller
09:08 AM bug #8297: Fix condensed distribution string for E+M: AM:
Wenn es für ein Areal Unterareale gibt und diese haben einmal einen indigenous und einmal einen „foreign“ Sta... Andreas Müller

02/16/2021

05:04 PM bug #9471 (Resolved): Widget is disposed exception when switching away from media before details view is completely loaded: yes, this should be resolved. Please review. Katja Luther
04:48 PM bug #9471: Widget is disposed exception when switching away from media before details view is completely loaded: is this resolved? (you mention it in #9374) Andreas Müller
01:57 PM bug #9471 (Closed): Widget is disposed exception when switching away from media before details view is completely loaded: When the media details view is not completely loaded and clicking on another element a "widget is disposed exception"... Katja Luther
02:28 PM bug #9374: ClassCastException when switching between media: After fixing #9471 the problem seems to be fixed. Please have a look whether you still can reproduce the exception. Katja Luther
10:17 AM task #9359 (In Progress): Update cdmlib, taxeditor, cdmserver etc. dependencies: Andreas Müller
08:02 AM bug #9468: specimen type of existing name cannot be saved: this seems to be a problem which stems from incomplete solution of #9290 Andreas Kohlbecker
08:01 AM bug #9468 (In Progress): specimen type of existing name cannot be saved: This sees to happen with newly created registrations only.
~~~~
07:50:46.162 [phycobank] [qtp599984672-30] ERROR ... Andreas Kohlbecker
07:38 AM bug #9470 (Resolved): CollectionDTO constructor prevent from circles: Applied in changeset commit:cdmlib|85d748e1311f1b1045ea33d07ebf5f0beb55e359. Andreas Kohlbecker
07:30 AM bug #9470 (Closed): CollectionDTO constructor prevent from circles: The constructor of CollectionDTO is being called recursively, to initialize also super collections.
Prevent from end... Andreas Kohlbecker

02/15/2021

09:05 PM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH: Andreas Müller wrote:
> Have you also checked that no ROLE_PUBLISH with wrong UUID exists in existing production DBs... Andreas Kohlbecker
04:15 PM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH: Have you also checked that no ROLE_PUBLISH with wrong UUID exists in existing production DBs? (see ticket description) Andreas Müller
03:52 PM bug #9469 (Closed): Searching for a UUID in bulkeditor which does not belong to a record throws an exception: When searching for such a UUID a record is shown in the table but when clicking on the record the following exception... Andreas Müller
03:36 PM bug #9468 (Worksforme): specimen type of existing name cannot be saved: Test version:
existing name selected (ok)
specimen type entered including all mandatory fields (ok)
saving the rec... Wolf-Henning Kusber
03:34 PM feature request #9296: Preference to show/not show infrageneric epithet for species: WGB:
ist schon merkwürdig – ich bin mir eigentlich sicher, dass es das früher (bei botanischen Namen) nicht gab. E... Andreas Müller

02/12/2021

03:51 PM bug #5670: Refresh of Taxon Navigator: Refresh only the handled taxonnode for changes in taxa or names. Katja Luther
11:46 AM bug #8970 (Worksforme): Moving a taxon to another position often closes the parent nodes: This seems to be fixed in the meanwhile, I can not reproduce it anymore. Katja Luther
11:38 AM bug #9467 (Resolved): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select: This should be fixed, please review. Katja Luther
09:19 AM bug #9467 (Closed): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select: The label provider for DefaultFeatureTreePreferences implements IBaseLabelProvider but should ILabelProvider.
~~~ ... Katja Luther
11:28 AM bug #9465: Open in ... NameEditor for orphan taxa results in CCE: This should be fixed. Please review. Katja Luther
11:27 AM bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE: Applied in changeset commit:taxeditor|731536ea445abf9f0ef923b21913ef545c6305d4. Katja Luther
09:29 AM bug #9463: UniversalViewer causes jQuery version conflict and breaks maps: work in progress in branch #9463-universalviewer-jquery-conflict Andreas Kohlbecker
09:02 AM bug #9466 (Closed): Termselection preference pages do not check the elements: The preference pages for term selection do not show the selected terms when opening. Saving of a new selection works ... Katja Luther

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