Activity
From 02/08/2021 to 03/09/2021
03/09/2021
- 06:29 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- For default preference "Keep when same"
Synonym to accepted, keep
syn ref1, homotypic syn ref2, parent ref3 -> ... - 10:00 AM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Andreas Müller wrote:
> If an accepted taxon is converted to a synonym (for an accepted taxon with same sec) its hom... - 05:05 PM feature request #9509 (Closed): IIIF manifest includes media source information
- 02:09 PM bug #9491 (Feedback): Order of terms in not order relevant trees
- Functionality and new code looks looks ok beside this and ticket can be closed.
- 12:13 PM bug #9491: Order of terms in not order relevant trees
- Can we rename FeatureTreeViewerComparator to TermTreeViewerComparator? "FeatureTree" is deprecated. Maybe we can run ...
- 11:57 AM bug #9491: Order of terms in not order relevant trees
- Can we delete the commented text in CreateDefinedTermOperation?
- 09:49 AM bug #9491 (Resolved): Order of terms in not order relevant trees
- Andreas Müller wrote:
> There was still an NPE when editing the title of a tree. I fixed this with a501f1e0 .
>
>... - 10:42 AM bug #9522: Workflow for reuse name
- As the current workflow creates incorrect data we should implement this soon.
- 09:28 AM bug #9522 (New): Workflow for reuse name
- when an already existing name is reused for a taxon or synonym the following steps should be done:
* check whether... - 10:08 AM task #9451 (Closed): Cache strategy for classifications is missing
- seems to work as expected.
- 09:59 AM bug #5670 (Closed): Refresh of Taxon Navigator
- Andreas Müller wrote:
> Seems to work.
> Only thing I realized, when creating a new taxon via TaxonNode assistant t... - 09:58 AM bug #9512 (Closed): Descriptions being created for individual associations in matrix should have description status "Individual association"
03/07/2021
- 03:31 PM EDIT Platform Etablierung report #9378: Meeting EDIT Platform documentation 2021-02-22
- Sollten wir das nicht lieber auf eine WikiSeite schreiben als in ein Ticket?
- 12:47 PM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
- All issues not related to areas with direct multiple parents are fixed with #9521. Now deeper hierarchies with multip...
- 12:25 PM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
- ERS:
mir scheint, Du hast die Probleme nun richtig erfasst und dargestellt.
Zur Krim:
Eigentlich ist gewünsc... - 12:04 PM task #8671: Distribution in E+M (BM) on different levels
- ERS (2020-06-23):
die „Distribution Aggregation“ verhält sich in diesem Fall wie gewollt: ein Unterareal vorhanden... - 11:39 AM feature request #9500 (In Progress): Allow removing certain distribution status from distribution publication
- ERS:
Für mich hört es sich plausibel an, für die Behandlung von Subarealen mit dem Status undefined besondere Reg... - 11:36 AM bug #8297: Fix condensed distribution string for E+M
- This should be fixed. Only code cleanup is needed.
- 11:36 AM bug #8297: Fix condensed distribution string for E+M
- Andreas Müller wrote:
> ... noch ein kleiner Nachtrag: bei der derzeitigen Implementierung kann es auch dazu kommen,... - 11:30 AM bug #8297: Fix condensed distribution string for E+M
- Andreas Müller wrote:
> An open issue:
>
> ... sollen im CondensedDistributionString für die Überareale jeweils n...
03/06/2021
- 01:50 PM feature request #9521 (Resolved): Fallback areas in textual representation should always stand alone
- Not yet implemented: show fallback areas only if they have sources (currently they are shown if there is an explicit ...
- 12:57 PM feature request #9521 (Closed): Fallback areas in textual representation should always stand alone
03/05/2021
- 11:48 PM bug #9520 (Resolved): Taxonnode parent merge cascade leads to non-transactional behavior
- This needs intensive reviewing as I removed cascading taxon node to parent.
I tested already that the problem itse... - 06:20 PM bug #9520 (Closed): Taxonnode parent merge cascade leads to non-transactional behavior
- If a taxon node is changed and saved the update result also contains its parent and also grandparents up to the class...
- 06:36 PM feature request #9340 (Feedback): Workflow support for secundum handling when making synonym a new accepted taxon
- If an accepted taxon is converted to a synonym (for an accepted taxon with same sec) its homotypic synonym having the...
- 06:26 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- When testing I sometimes (often at the very beginning after I adapted the test data) got very strange results like pu...
- 03:21 PM feature request #9340 (Resolved): Workflow support for secundum handling when making synonym a new accepted taxon
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > I have not checked but I guess that th... - 04:26 PM bug #9506 (Closed): Rights can not be selected for reuse
- This works now. Maybe the server was not restarted when I checked last time.
- 04:21 PM bug #8767 (Closed): Workflow support for publish flag
- Yes this can be closed.
- 03:17 PM bug #8767: Workflow support for publish flag
- create follow up ticket for the publish check of the whole homotypic group
- 03:15 PM bug #8767 (Resolved): Workflow support for publish flag
- I think we can close this ticket, I checked all operations mentioned above.
- 09:39 AM bug #8767: Workflow support for publish flag
- Now also MAN -> Synonym works as expected:
acc 1, MAN 0 => Syn 0 (OK)
acc 1, MAN 1 => Syn 1 (OK)
acc 0, MAN 0 =>... - 12:37 AM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > Tested MA... - 04:04 PM bug #5670 (Feedback): Refresh of Taxon Navigator
- Seems to work.
Only thing I realized, when creating a new taxon via TaxonNode assistant the navigator collapses afte... - 03:41 PM bug #5670 (Resolved): Refresh of Taxon Navigator
- OK, I will review those which work already.
- 03:37 PM bug #5670: Refresh of Taxon Navigator
- Andreas Müller wrote:
> What is about the other open issues which you did not move to the new ticket yet:
>
> * N... - 03:27 PM bug #5670 (Feedback): Refresh of Taxon Navigator
- What is about the other open issues which you did not move to the new ticket yet:
* New Taxon Node / Update Taxon ... - 02:39 PM bug #5670 (Closed): Refresh of Taxon Navigator
- create open issues ticket #9514
- 01:59 PM bug #5670: Refresh of Taxon Navigator
- I tested NameEditor save and swap and both work well.
Only minor question I have is: can we easily avoid refresh c... - 12:55 PM bug #5670: Refresh of Taxon Navigator
- Andreas Müller wrote:
> Can you please check the lists in the description if they are correct and complete?
>
> (... - 12:43 PM bug #5670 (Feedback): Refresh of Taxon Navigator
- Can you please check the lists in the description if they are correct and complete?
(I still have to wait for the ... - 12:33 PM bug #5670: Refresh of Taxon Navigator
- open issues can be taken from callhierarchy of WorkbenchEventConstant.REFRESH_NAVIGATOR
- 12:08 PM bug #5670: Refresh of Taxon Navigator
- Andreas Müller wrote:
> Now, when changing the name in NameEditor the new taxon is not rearranged within the parent ... - 12:07 PM bug #5670 (Resolved): Refresh of Taxon Navigator
- Applied in changeset commit:taxeditor|9f2b6bf28cb2c5ee2cd57937cbde483e929761c0.
- 11:58 AM bug #5670 (Feedback): Refresh of Taxon Navigator
- Now, when changing the name in NameEditor the new taxon is not rearranged within the parent taxon yet.
I think you m... - 03:47 PM feature request #9519 (New): Add posibilty to add IndividualAssociation descriptions in Facts View
- Currently it is not yet possible to set the status of a description manually in the details view. Needs to be discuss...
- 03:34 PM bug #9516: Check publish flag of all homotypic synonyms when moving
- As this is a follow up ticket we should implement it soon as it is strongly related to the original ticket.
- 03:18 PM bug #9516 (New): Check publish flag of all homotypic synonyms when moving
- see #8767
- 03:30 PM feature request #9514: Open issues for taxon navigator refresh
- We should try to handle this in the near future to finish this task which we started in 5.21.
- 02:38 PM feature request #9514 (New): Open issues for taxon navigator refresh
- * refresh of navigator only if titleCache of the name is changed.
* open the tree for the new position after move ta... - 03:22 PM feature request #9518 (Closed): Add symbol to descriptions having status individual association in facts view
- Similar to literatur descriptions.
Symbol as a first step can be taken from any symbol used in the specimen tree edi... - 03:18 PM feature request #9517 (New): Descriptions with status "IndividualsAssociation" should only support adding of features supporting IndividualAssociations
- Currently all allowed features can be added.
The problem exists in Facts View. - 03:10 PM feature request #9515 (Closed): Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- copied from #9512:
Probably more such descriptions are created by the ABCD import. Katja, can you please check if ... - 03:02 PM bug #9512 (Feedback): Descriptions being created for individual associations in matrix should have description status "Individual association"
- This works, though I just realized that the matrix creates such indAss very seldom as it is only relevant for specime...
- 11:19 AM bug #9512 (Resolved): Descriptions being created for individual associations in matrix should have description status "Individual association"
- Applied in changeset commit:cdmlib|8fea24a9b642e10a89b545ac04352bd582c9835c.
- 10:49 AM bug #9512 (Closed): Descriptions being created for individual associations in matrix should have description status "Individual association"
- 11:44 AM bug #7521 (Closed): refresh of taxonnavigator sometimes does not work for moving taxonnodes
- Seems to work now
- 11:07 AM task #9513: "table to div regression": replace scriptler + dynamic parameter plugins
- downgrading to v2.263 is not easily possible as this will require to downgrade a couple of plugins also
- 10:55 AM task #9513 (Closed): "table to div regression": replace scriptler + dynamic parameter plugins
- Due to the "table to div regression" the [Configure UI is completely broken after upgrade to 2.264](https://issues.je...
- 10:13 AM bug #9481 (Closed): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- Andreas Müller wrote:
> Works as expected. I did a minor code cleanup. Please check if you think it is correct and c... - 10:11 AM bug #9481 (Feedback): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- Works as expected. I did a minor code cleanup. Please check if you think it is correct and close ticket if yes.
03/04/2021
- 08:47 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Katja Luther wrote:
> Andreas Müller wrote:
> > I have not checked but I guess that the secundum of other synonyms ... - 08:36 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Andreas Müller wrote:
> I have not checked but I guess that the secundum of other synonyms in the homotypic group is... - 08:13 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- I have not checked but I guess that the secundum of other synonyms in the homotypic group is probably not checked yet...
- 07:59 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Andreas Müller wrote:
> I test all other preferences (except for default preference) for change "synonym to accepted... - 07:46 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- I test all other preferences (except for default preference) for change "synonym to accepted taxon" and "change taxon...
- 07:39 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Andreas Müller wrote:
> The preference says
>
> ![](picture937-1.png)
>
> Is it true that it is only for thes... - 07:36 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- The preference says
![](picture937-1.png)
Is it true that it is only for these 2 operations or should we adapt... - 07:33 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Katja, can you please run the same type of tests for
* move synonym to another taxon
* move accepted to new pare... - 07:32 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Further tested change accepted to synonym (with default preference)
Old parent sec2, oldAcc null, newAcc sec1 => w... - 07:25 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Tested change synonym to accepted taxon (with default preference)
OldAcc sec1, oldSyn sec1, newParent sec1 => newA... - 06:46 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Tested change accepted to synonym (with default preference)
Old parent sec1, oldAcc sec1, newAcc sec1 => warning (... - 04:09 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Also the message seems to mention the old accepted taxon but I think finally we decided that here the old accepted ta...
- 04:07 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Tested: Syn => Acc
![](picture023-1.png)
The dialogue title and the message seem to be mixed up, they should be... - 03:59 PM feature request #9340 (Feedback): Workflow support for secundum handling when making synonym a new accepted taxon
- Generally use se**c**undum not sekundum in German dialogues (and elsewhere) as secundum is Latin. I don't think there...
- 03:49 PM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Tested: Syn => MAN and back
In step 1 sec was deleted (OK)
In step 2 sec was added (taken from accepted) - (OK, ... - 08:45 PM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Tested MAN/ppSyn => Syn
> > >
> > >... - 08:40 PM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Tested change accepted to synonym
> >... - 08:37 PM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> Andreas Müller wrote:
> > Tested MAN/ppSyn => Syn
> >
> > acc 1, MAN 0 => Syn 0 (OK)
> > ... - 07:10 PM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> Andreas Müller wrote:
>
> > Katja, can you do the same check for "move accepted to new pare... - 07:04 PM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Katja, can you do the same check for "move accepted to new parent". I don't if this is alr... - 06:17 PM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Tested change accepted to synonym
> >
> > Old parent 1, old ac... - 06:06 PM bug #8767: Workflow support for publish flag
- Katja, can you do the same check for "move accepted to new parent". I don't if this is already fully fixed, committed...
- 06:04 PM bug #8767: Workflow support for publish flag
- Tested move synonym/homotypic group to another taxon
Old acc 1, old syn 1, new acc 1 => new syn 1 w/o warning (OK)... - 05:48 PM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Tested MAN/ppSyn => Syn
>
> acc 1, MAN 0 => Syn 0 (OK)
> acc 1, MAN 1 => Syn 0 (FALSE)
... - 05:44 PM bug #8767: Workflow support for publish flag
- change synonym to accepted taxon
Old acc 1, old syn 1, new parent 1 => new acc 1 w/o warning (OK)
Old acc 1, old ... - 05:35 PM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Tested change accepted to synonym
>
> Old parent 1, old acc 1, new acc 1 => new syn 0, w/... - 05:33 PM bug #8767: Workflow support for publish flag
- Tested change accepted to synonym
Old parent 1, old acc 1, new acc 1 => new syn 0, w/o warning (FALSE, should be 1... - 05:10 PM bug #8767: Workflow support for publish flag
- Tested MAN/ppSyn => Syn
acc 1, MAN 0 => Syn 0 (OK)
acc 1, MAN 1 => Syn 0 (FALSE)
acc 0, MAN 0 => Syn 0 (OK)
acc... - 05:00 PM bug #8767: Workflow support for publish flag
- Tested Syn => MAN/ppSyn
acc 1, syn 0 => MAN 0 (OK)
acc 0, syn 1 => MAN 1 (OK)
acc 0, syn 0 => MAN 0 (OK) - 04:17 PM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> For operations like swap I do not see the need to test for the parent if the old and the new a... - 04:10 PM bug #8767: Workflow support for publish flag
- For operations like swap I do not see the need to test for the parent if the old and the new accepted have the same p...
- 03:37 PM bug #8767: Workflow support for publish flag
- Katja, can you please test correct functionality for each of the above operations and leave a message in this ticket ...
- 03:35 PM bug #8767 (Feedback): Workflow support for publish flag
- Testing swap:
* if parent taxon has state 1 and old+new taxon state 2 no warning appears
* if warning appears it ... - 03:51 PM bug #9481: ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- fixed.
- 03:50 PM bug #9481 (Resolved): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- Applied in changeset commit:cdmlib|64c76cb2c3937cf979045741195fae0ade7013a6.
- 03:08 PM bug #9481 (Feedback): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- No exception anymore, but it looks like the descriptions are duplicated now.
I ran on Arenaria serpyllifolia Bourg... - 02:28 PM bug #7091 (Closed): Add uri field and abbreviatedText to Righs in supplemental data
- seems to work as expected.
- 11:36 AM bug #7091 (Resolved): Add uri field and abbreviatedText to Righs in supplemental data
- this should be fixed.
- 10:05 AM bug #7091: Add uri field and abbreviatedText to Righs in supplemental data
- Licences become more important in future (Chichorieae has such data) so we should try to implement it soon
- 02:25 PM bug #9506 (Feedback): Rights can not be selected for reuse
- Katja Luther wrote:
> Andreas Müller wrote:
> > We should also include abbrev and uri if data is not empty (see #70... - 02:20 PM bug #9506: Rights can not be selected for reuse
- Katja Luther wrote:
> Andreas Müller wrote:
> > Empty values are not handled correctly:
> >
> > ![](picture205-1... - 11:20 AM bug #9506 (Resolved): Rights can not be selected for reuse
- Andreas Müller wrote:
> We should also include abbrev and uri if data is not empty (see #7091)
this is fixed. - 11:08 AM bug #9506 (In Progress): Rights can not be selected for reuse
- Andreas Müller wrote:
> Empty values are not handled correctly:
>
> ![](picture205-1.png)
>
> I think empty or... - 10:12 AM bug #9506: Rights can not be selected for reuse
- Finally we could add a filter to search only on certain rights types. But this might be another ticket.
- 10:11 AM bug #9506: Rights can not be selected for reuse
- We should also include abbrev and uri if data is not empty (see #7091)
- 10:09 AM bug #9506 (Feedback): Rights can not be selected for reuse
- Empty values are not handled correctly:
![](picture205-1.png)
I think empty or null values should not show up i... - 01:07 PM bug #9510: Improve label for descriptions created via DDS matrix
- ... ich sehe gerade, dass die obige Labeldiskussion v.a. fürs Portal gedacht war, dennoch vielleicht auch passend für...
- 01:03 PM bug #9510: Improve label for descriptions created via DDS matrix
- Auch das Label der Specimen description selber entspricht noch nicht ganz dem, wie wir es mal besprochen haben:
... - 10:51 AM bug #9510: Improve label for descriptions created via DDS matrix
- The above suggestion are only meant as first ideas. Please feel free to suggest/find better labels.
- 10:50 AM bug #9510 (In Progress): Improve label for descriptions created via DDS matrix
- The automatically created label for a new "literature" description is something like {name of DDS}: Factual data set ...
- 11:38 AM bug #8760: Presentation and linking of molecular data in specimen table too unclear
- A current working link: http://campanula.e-taxonomy.net/cdm_dataportal/taxon/2e3aa801-7307-409c-bd39-d825f5f1e031/spe...
- 11:01 AM feature request #9511 (New): Move specimens/individual associations for matrix into same description
- If one adds a new specimen description in the matrix for a specimen that is not yet attached as individuals associati...
- 10:35 AM bug #9488 (Closed): Show details of description in character matrix
- This works now.
- 10:01 AM bug #6688 (Duplicate): Rights do not show up in rights search if no text is given
- duplicates #9506
03/03/2021
- 06:51 PM feature request #9509: IIIF manifest includes media source information
- implemented, formatting of the output my need further improvement
- 06:49 PM feature request #9509 (Resolved): IIIF manifest includes media source information
- Applied in changeset commit:cdmlib|5a1bde2d875ebc302cae81e09f994cae51877b67.
- 06:23 PM feature request #9509 (Closed): IIIF manifest includes media source information
- source data of media entities need to be added to the IIIF manifests.
This need to be implemented into the `Manife... - 05:54 PM feature request #9508 (New): OpenID Connect 1.0 authentication with ORCID
- ORCID offers an OpenID Connect 1.0 (a simple identity layer on top of the OAuth 2.0 protocol) service which allows to...
- 02:24 PM bug #9488 (Resolved): Show details of description in character matrix
- Andreas Müller wrote:
> Adding a source was possible but I could not persist the change. After reopening the changes... - 02:01 PM bug #9506: Rights can not be selected for reuse
- is this already for review?
- 12:22 PM bug #9506: Rights can not be selected for reuse
- now the search is on text and agent.titlecache and the label contains {text} - {agent.titleCache} - {type.titleCache}
- 12:20 PM bug #9506 (Resolved): Rights can not be selected for reuse
- Applied in changeset commit:cdmlib|90f0f3376dce0188f40dad490274d666ad82c2c5.
- 11:30 AM bug #9481 (Resolved): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- yes please review
- 11:29 AM bug #9481: ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- is this for review?
- 10:38 AM feature request #9507: Add ratioTo structure to Character
- NK:
Es gibt eine Reihe von Properties, die für Relationen zwischen Strukturen genutzt werden und zu denen in unser... - 10:36 AM feature request #9507 (Closed): Add ratioTo structure to Character
- Some characters handle the ratio between two structures, e.g. length ratio between corolla and calyx.
For this we ... - 08:27 AM feature request #9473: Support moving images to new taxa similar to facts
- This is critical as we need it for the new media handling strategy
03/02/2021
- 11:10 PM bug #9506: Rights can not be selected for reuse
- The problem is probably that for copyrights usually only an agent and the rights type is given, but no text.
So the ... - 10:35 PM bug #9506 (Closed): Rights can not be selected for reuse
- The selection dialog for rights does not show any existing data even if "*" is entered.
This happened in the cypru... - 10:09 PM bug #9488 (Feedback): Show details of description in character matrix
- Adding a source was possible but I could not persist the change. After reopening the changes were missing.
This is... - 09:40 PM feature request #3816 (Closed): Create "Undefined" status and choose it for NULL status
- Fixed. The update script is handled in separat ticket #9505.
- 09:39 PM feature request #9505 (New): Set missing distribution status to "undefined"
- copied from #3816
Before, check which data are affected and think about if it is really necessary.
- 09:33 PM bug #9491 (Feedback): Order of terms in not order relevant trees
- There was still an NPE when editing the title of a tree. I fixed this with a501f1e0 .
It generally works. Only I d... - 09:21 PM bug #9504 (Closed): Changing term tree title is not persisted
- If I create a new term tree and change the title before saving the title is reset to the default title after saving
- 09:15 PM feature request #9499 (Closed): Make isAbsent editable in DetailsView
- This is fixed though "should be disabled for mangaged terms" is not yet implemented. But it seems that this is not ye...
- 03:18 PM feature request #9499 (Resolved): Make isAbsent editable in DetailsView
- Applied in changeset commit:taxeditor|a524e7d8a97c00b9274b767e73f75d0a47627da0.
- 02:11 PM feature request #9499 (Closed): Make isAbsent editable in DetailsView
- For PresenceAbsenceTerm the isAbsent attribute is not yet editable and visible.
As idInVoc (and others) editing sh... - 08:38 PM bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
- AM:
ich sehe gerade auf http://www.europlusmed.org/cdm_dataportal/taxon/6a8e85bd-5e52-4ae2-9444-99128c87a672, dass... - 08:19 PM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
- AM:
Problematisch sind derzeit ja noch die Fallback-Areale, die viele Hierarchiestufen haben oder überlappen. Also... - 07:31 PM feature request #9502 (Resolved): Implement subarea preference rule and fallback areas for areas with complex hierarchy
- #5050 defines the subarea preference rule and also describes implements it for areas Ju, Cz, IJ and LS which are rela...
- 08:17 PM feature request #9500: Allow removing certain distribution status from distribution publication
- AM:
Und noch etwas bezüglich undefined:
Im alten Portal werden diese Status ja auch grundsätzlich nicht mitbrüc... - 08:15 PM feature request #9500: Allow removing certain distribution status from distribution publication
- AM:
In einigen Fällen, und insbesondere in den Fällen, bei denen die Unterareale nur eine undefined Verbreitung ha... - 03:40 PM feature request #9500 (Feedback): Allow removing certain distribution status from distribution publication
- from #8858#note-14
An even better solution might be to use a term tree for filtering and ordering the distribution... - 08:14 PM bug #8297: Fix condensed distribution string for E+M
- An open issue:
... sollen im CondensedDistributionString für die Überareale jeweils nur die Unterarealstatus ausge... - 08:12 PM task #9501: Find inconsistent higher area distribution status data in E+M
- AM:
Ein ähnlicher Fall, der mir nicht ganz klar ist, ist der, wenn es für das Überareal einen Status mit höherer P... - 07:03 PM task #9501: Find inconsistent higher area distribution status data in E+M
- The results of the query were sent to ERS today.
- 07:03 PM task #9501 (New): Find inconsistent higher area distribution status data in E+M
- The distribution status of a higher area (area with subareas) should usually not have a higher status then the highes...
- 07:59 PM feature request #9484 (Rejected): Distinguish default hidden/fallback area handling from empty list of hidden/fallback area markers
- In #9502 it was decided that hidden and fallback areas should better be handled by term trees so the current ticket i...
- 07:58 PM feature request #9503 (Closed): Handle term tree of areas and distribution status for distributionInfo in dataportal
- This is blocked by #9500 and/or #9502.
See the description there for further information. - 07:51 PM bug #9486 (Duplicate): Fallback areas not handled in area hierarchy are not showing up correctly if subarea data exists
- This is more or less a duplicate for #9502.
- 07:45 PM feature request #3904 (Closed): EuroMed: Implement filtering rules for distributions
- All subtasks and related are closed. Open issues are handled in follow up tickets #9500 (for status) and #9502 (for a...
- 07:42 PM feature request #5050 (Closed): revise the subAreaPreference rule for filtering Distributions
- Generally this is fixed. The subarea preference is implemented for map creation. Some open issues with fallback areas...
- 07:33 PM task #8671 (Rejected): Distribution in E+M (BM) on different levels
- As the rule is clear that supra-area information should not be shown on maps as long as subarea information is avail...
- 07:10 PM bug #8670 (Closed): Unwanted distribution aggregation/display on 2 levels
- As there were no complaints about this issue anymore since the ticket was resolved I close it. Open new ticket for an...
- 03:41 PM bug #8858 (Closed): Ordering of distribution status 'undefined' is not correct in E+M
- The new implementation works as expected. The result is for Talinum paniculatum on test is "-● -Md(??M) [aAu(A) pAz(a...
- 01:36 PM bug #8858: Ordering of distribution status 'undefined' is not correct in E+M
- Applied in changeset commit:cdmlib|4dccf2d61ae938ff7638aa262de483068859fd3b.
- 01:34 PM bug #8858 (Resolved): Ordering of distribution status 'undefined' is not correct in E+M
- The reason why the first fix didn't work is that PresenceAbsenceTerm had it's own compareTo method, including an isPr...
- 02:15 PM bug #9475 (Closed): NameTypeDesignations for existing names in other nom acts can not be created
- 12:15 PM feature request #9494 (Closed): Improve UI: Selection of ranks in Name Editor
- closing as duplicate
- 09:36 AM bug #9483 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
- 09:36 AM feature request #8981 (Closed): Improve NameStatus in UI
- 09:33 AM feature request #9498 (Closed): Password Recovery, Registration and Login Dialog Tab fully functional
- this is needed for the cdm-vaadin login dialog tab "Password Recovery "
- 09:32 AM feature request #9497 (Closed): User self registration service
- this is needed for the cdm-vaadin login dialog tab "Register"
03/01/2021
- 10:10 PM feature request #9496 (New): Handling fossil taxa
- unsure how to do this.
PhycoBank need a "fossil" flag.
Where to place this?
In databases, a name is flaged as f... - 10:06 PM feature request #9495 (New): Add eISSN and eISBN fields if a publication is hard copy and electronic
- ISSN should be supplemented by a eISSN field
ISBN should be supplemented by a eISBN field
Field name to be discus... - 10:01 PM feature request #9494 (Closed): Improve UI: Selection of ranks in Name Editor
- The normal usecase is that 95% of name registrations are using just 5 ranks.
Some ranks in the selection are irrelev... - 09:46 PM bug #9493 (New): Duplicate of species epithet when an existing species name is used for typification
- After selection of an existing species name for typification, the selection of species epithets in the Name editor sh...
- 07:50 PM feature request #9492: Improve NameStatus in UI - new
- "Icn Shenzhen 2017" is not needed for PhycoBank
ICN is not the title
the year of publication is 2018
This is a... - 07:19 PM feature request #9492 (New): Improve NameStatus in UI - new
- Follow up zu #8981
Currently the fields are shown:
Status type // Reference // Reference detail // Rule considere... - 07:21 PM feature request #8981: Improve NameStatus in UI
- This ticket can be closed.
new ticket: #9492 - 06:40 PM bug #9491 (Resolved): Order of terms in not order relevant trees
- Changed to client side ordering because the server does not know about the preference "Show Id in Vocabulary" for the...
- 05:01 PM bug #9491 (Closed): Order of terms in not order relevant trees
- The order of not order relevant trees in term tree editors should be alphabetic.
- 06:20 PM bug #9475: NameTypeDesignations for existing names in other nom acts can not be created
- The name type section works for new genera names as well as for expisting names as expected.
The recorded error was ... - 04:06 PM bug #9475: NameTypeDesignations for existing names in other nom acts can not be created
- I cant see any problem.
Here you can see me choosing the section (non sense data) of the typifying authors:
![]... - 05:58 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
- Trinominals can be created and stored. If this is due to #9483 this ticket can be closed.
- 04:50 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
- new ticket for possibly better solution #9490
- 03:11 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
- Hi Henning, this issue can be reviewed again.
- 03:08 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
- Usually we are passing initStrategies to the service methods in order to initialize associated entities. In this case...
- 05:50 PM bug #9485 (Closed): TaxonNamePopupEditor: StackOverflow on selecting ICN reference
- 05:43 PM bug #9485: TaxonNamePopupEditor: StackOverflow on selecting ICN reference
- works as expected, ticket can be closed.
- 10:38 AM bug #9485 (Resolved): TaxonNamePopupEditor: StackOverflow on selecting ICN reference
- Applied in changeset commit:cdm-vaadin|3035e8761cb98d17cd8c2874305069953d656310.
- 08:23 AM bug #9485 (Closed): TaxonNamePopupEditor: StackOverflow on selecting ICN reference
- Selection of a ICN reference causes an error
Name editor, new name goto nom.inval., select nom.inval.
Sele... - 05:04 PM bug #9488 (Resolved): Show details of description in character matrix
- this should be fixed, please review
- 04:09 PM bug #9488 (Closed): Show details of description in character matrix
- mail NK:
wenn ich in der Matrix mit dem Kontext-Menu zu einem Taxon "Create literature description" hinzufüge, bek... - 04:51 PM bug #8312 (Closed): Test, fix, improve and run Transmission engine for E+M
- This should be fixed with the implementation of transmission engine and following unified description aggregation as ...
- 04:50 PM task #9490 (Closed): avoid rank entity in TaxonNameParts
- ... vielleicht kann man den auch loswerden .... rankSpecificNamePart
kann man auch sofort bei der Bildung des DTO a... - 04:43 PM feature request #2625 (Closed): [E+M Overview] Data aggregation functionalities for E+M (TransmissionEngine)
- This should be fixed with the transmission engine implementations (see subtasks) and with the implementation of descr...
- 04:12 PM bug #9489 (New): Fix header of character matrix for hierarchical characters
- mail NK:
Matrix header: für den Matrix header in der obersten Hierarchie-Ebene, also 1. Spaltenüberschiriftenzeile... - 04:09 PM bug #9470 (Closed): CollectionDTO constructor prevent from circles
- 03:24 PM feature request #9487 (New): Split state (and/or other big) vocabularies
- mail NK:
Das Handling großer Vokabulare (States!) ist immer noch recht mühselig, wegen langer Lade- und Speicherzeit... - 03:18 PM bug #9476 (Closed): SpecimenTypeDesignations for existing names in other nom acts can not be created
- 02:19 PM bug #8310 (Closed): Issues to solve in E+M shapefile
- I think generally we can close this ticket. Open and new issues can be handled in separate tickets like #9367. Open i...
- 12:51 PM bug #8310: Issues to solve in E+M shapefile
- There is another open issue reported in #9367
- 02:08 PM bug #4409: fallback areas are not adressable in the shape file
- Andreas Müller wrote:
> This seems to be fully fixed except for the Baltic states issue handled in #9367. TCS is now... - 01:25 PM bug #4409 (Closed): fallback areas are not adressable in the shape file
- This seems to be fully fixed except for the Baltic states issue handled in #9367. TCS is now shown as 1 area if no su...
- 11:05 AM bug #4409 (Resolved): fallback areas are not adressable in the shape file
- Andreas Müller wrote:
> This should be fixed now. Either with #8858 or already before. Open issues are otherwise han... - 10:59 AM bug #4409 (Closed): fallback areas are not adressable in the shape file
- This should be fixed now. Either with #8858 or already before. Open issues are otherwise handled in #8297 and related...
- 02:05 PM bug #9486 (Duplicate): Fallback areas not handled in area hierarchy are not showing up correctly if subarea data exists
- followup from #4409
In #4409 correct handling of fallback areas like Ju, Cz, IJ and LS in maps have been fixed. Un... - 01:53 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
- log from a hangup:
~~~
Mar 01 13:40:35 edit-community systemd[1]: Starting user-0.slice.
Mar 01 13:40:35 edit-co... - 01:49 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
- hung up still happen
attempt to find the cause by more loggin by logging the post-receive script execution with sy... - 01:13 PM bug #9478 (Closed): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
- no regression occurs in the case described in #7245
no duplicate of #8249
and fully solved - 11:33 AM bug #9480 (Closed): SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
- 09:50 AM bug #8297: Fix condensed distribution string for E+M
- AM:
auf introduced: doubtfully introduced (perhaps cultivated only) bist du noch nicht explizit eingegangen in de...
02/27/2021
- 08:27 AM bug #8297 (Resolved): Fix condensed distribution string for E+M
- This should be fixed now and can be reviewed on test or on production after the next release
- 08:25 AM bug #8858 (Closed): Ordering of distribution status 'undefined' is not correct in E+M
- Andreas Müller wrote:
> Another solution is implementing #3816
This solution finally has been implemented. The st...
02/26/2021
- 07:03 PM feature request #9484 (Rejected): Distinguish default hidden/fallback area handling from empty list of hidden/fallback area markers
- The current default CondensedDistributionConfiguration uses the euro+med marker types for hidden and fallback areas a...
- 06:23 PM bug #9475: NameTypeDesignations for existing names in other nom acts can not be created
- existing genus name selected, fine.
Name type designation editor opened, fine.
Type selected, fine.
Species name ... - 03:42 PM bug #9475: NameTypeDesignations for existing names in other nom acts can not be created
- please review
- 06:17 PM bug #5206 (Closed): Status symbols in condensed distribution string repeated for subareas
- This should be fixed and can be reviewed together with #8297. It is more or less a duplicate and therefore I close it.
- 06:14 PM bug #9476: SpecimenTypeDesignations for existing names in other nom acts can not be created
- works as expected, ticket can be closed.
- 03:44 PM bug #9476 (Resolved): SpecimenTypeDesignations for existing names in other nom acts can not be created
- 03:43 PM bug #9476 (In Progress): SpecimenTypeDesignations for existing names in other nom acts can not be created
- please review
- 06:06 PM bug #9480: SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
- function as expected, ticket can be closed.
- 03:41 PM bug #9480: SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
- please review
- 01:53 PM bug #9480 (Resolved): SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
- Applied in changeset commit:cdm-vaadin|8195658eef52a7189fd6c622d34b020516db9ed5.
- 05:57 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
- Review: Internal error when selecting variety of form, instead of opening a third field for the last epithet.
- 03:40 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
- please review
- 02:38 PM bug #9483 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
- Applied in changeset commit:cdmlib|e20135dca8ba5443b97814e31ad18cdc93036865.
- 02:27 PM bug #9483 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
- The LIE occurs in `public String rankSpecificNamePart()` at `rank.isHigher(Rank.GENUS())` which internally calls `Or...
- 04:36 PM bug #9482 (Closed): NameTypeDesignationEditor: designationReference --> new causes LIE
- 04:00 PM bug #9482: NameTypeDesignationEditor: designationReference --> new causes LIE
- limitation works already, only the LIE is a problem
- 01:55 PM bug #9482: NameTypeDesignationEditor: designationReference --> new causes LIE
- Currently creating new reference is blockes by a
~~~
org.hibernate.LazyInitializationException: could not initia... - 01:53 PM bug #9482 (Closed): NameTypeDesignationEditor: designationReference --> new causes LIE
- in some cases creating new reference is blocked by a
~~~
org.hibernate.LazyInitializationException: could not in... - 12:08 PM bug #8297: Fix condensed distribution string for E+M
- ERS:
für native: reported in error gilt das gleiche wie für introduced: reported in error, ein Minus - vor dem Kür... - 12:07 PM bug #9481 (Closed): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
- While swapping synonym to taxon, the descriptions are cloned but cannot be deleted with the old accepted taxon becaus...
- 11:35 AM bug #5670 (Resolved): Refresh of Taxon Navigator
- I put this to resolved so I have it on the review list.
Before closing the ticket we should create a new ticket for ... - 10:28 AM bug #5670: Refresh of Taxon Navigator
- in #note-7 the steps already solved are described, if there are other issues we should create a new ticket or keep th...
- 11:32 AM feature request #9340 (Resolved): Workflow support for secundum handling when making synonym a new accepted taxon
- I put this ticket to resolved so I have it in the review list. Before closing the ticket we should move open issues t...
- 11:31 AM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- Can you add a list to the description, which other operations are planned to have this workflow support?
- 10:19 AM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
- please review the already implemented workflows
- 10:26 AM bug #7521 (Resolved): refresh of taxonnavigator sometimes does not work for moving taxonnodes
- this should also be fixed while working on #5670
- 10:09 AM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- works now
- 10:08 AM bug #8198 (Closed): Deleting an image gallery from image gallery view shows wrong configuration dialog
- 08:05 AM bug #8767 (Resolved): Workflow support for publish flag
- implemented the publish check also for accepted to syn.
- 07:55 AM bug #9467 (Closed): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Multi-select is still possible:
> > ![](picture658-1.png)
>
...
02/25/2021
- 05:20 PM bug #9480 (Closed): SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
- 04:58 PM bug #9479 (Closed): ToOneRelatedEntityCombobox misses sending ValueChanged events to MBeanFieldGroup
- 03:05 PM bug #9479 (Resolved): ToOneRelatedEntityCombobox misses sending ValueChanged events to MBeanFieldGroup
- Applied in changeset commit:cdm-vaadin|f2a3bcfd9db13c5182ad648cf848d50df85a78d1.
- 03:03 PM bug #9479 (Closed): ToOneRelatedEntityCombobox misses sending ValueChanged events to MBeanFieldGroup
- the SpecimenTypeDesignationDTORow contains the `ToOneRelatedEntityCombobox<Reference> designationReference`
The fie... - 04:25 PM bug #8767: Workflow support for publish flag
- Katja Luther wrote:
> Changing an unpublished accepted to a synonym of an published accepted taxon, how should we ha... - 11:35 AM bug #8767: Workflow support for publish flag
- Changing an unpublished accepted to a synonym of an published accepted taxon, how should we handle this? Keep the pub...
- 09:55 AM bug #8767: Workflow support for publish flag
- By the way, currently this is handled as an info (i) but I think a warning would be better.
- 09:54 AM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> Accordingly we should check ALL operations to handle the publish flag correctly.
E.g. als... - 09:49 AM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> The message pops up 2x now
I can not reproduce this anymore. - 09:45 AM bug #8767: Workflow support for publish flag
- Andreas Müller wrote:
> The message pops up 2x now
With the actual nightly build I can not reproduce this. - 09:42 AM bug #8767: Workflow support for publish flag
- Accordingly we should check ALL operations to handle the publish flag correctly.
- 09:42 AM bug #8767: Workflow support for publish flag
- Also swapping synonym with accepted has strange behavior: only the names swap but the publish flag stays. E.g. if old...
- 09:26 AM bug #8767 (Feedback): Workflow support for publish flag
- The message pops up 2x now
- 04:23 PM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- Andreas Müller wrote:
> Multi-select is still possible:
> ![](picture658-1.png)
If this is fixed, yes. - 11:30 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- so we can close this ticket?
- 10:01 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- Katja Luther wrote:
> Andreas Müller wrote:
> > Wir sollten auch das Label noch anpassen für beide Fenster.
> >
... - 10:00 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Im Deutschen: Default Merkmalsbaum => ... - 09:59 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- Katja Luther wrote:
> Andreas Müller wrote:
> > Im Deutschen: Default Merkmalsbaum => Standard Merkmalsbaum
Is t... - 09:24 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- Andreas Müller wrote:
> Wir sollten auch das Label noch anpassen für beide Fenster.
>
> Im Deutschen: Default Mer... - 09:11 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- Außerdem sollten wir die Reihenfolge ändern, die nat. lang. descriptions sind unwichtig, und sollten daher nach unten
- 09:10 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- Wir sollten auch das Label noch anpassen für beide Fenster.
Im Deutschen: Default Merkmalsbaum => Standard Merkmal... - 08:56 AM bug #9467 (Feedback): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- Multi-select is still possible:
![](picture658-1.png) - 02:48 PM bug #9478 (Resolved): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
- Applied in changeset commit:cdm-vaadin|36c60299426da3a4ae7f9c90ba0568d8e9e64402.
- 02:41 PM bug #9478 (In Progress): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
- 02:38 PM bug #9478 (Closed): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
- the SpecimenTypeDesignationDTORow contains the `ToOneRelatedEntityCombobox<Reference> designationReference`
When se... - 11:28 AM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
- 10:24 AM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- Andreas Müller wrote:
> Katja Luther wrote:
> > The configuration wizard is only shown for persisted media now and ... - 10:12 AM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > The exception is fixed now. However, t... - 10:08 AM bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
- 10:06 AM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- Katja Luther wrote:
> The configuration wizard is only shown for persisted media now and only if media exist.
it ... - 10:27 AM bug #9477 (Closed): New ordered terms do not have correct order index
- If a new term is added to a new ordered term vocabulary the term is not put to the correct position. Instead it is mo...
02/24/2021
- 11:15 PM bug #8297: Fix condensed distribution string for E+M
- AM:
für folgende Status bräuchte ich noch die korrekten Symbole:
• native: reported in error => „-“ ? Genaus... - 04:07 PM bug #8297: Fix condensed distribution string for E+M
- ERS (2020-06-23):
Unterareale sollten ja eigentlich in Klammern nach dem Hauptareal zusammengefasst werden, also d... - 03:27 PM bug #8297: Fix condensed distribution string for E+M
- Bellis perennis on test: http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/taxon/0eb6ca37-3365-4af5...
- 10:03 PM feature request #3816 (Resolved): Create "Undefined" status and choose it for NULL status
- I added the term. We should split the update script to another ticket.
- 05:39 PM feature request #3816: Create "Undefined" status and choose it for NULL status
- The new status should be last in vocabulary as discussed for ordering in E+M
- 05:37 PM feature request #3816: Create "Undefined" status and choose it for NULL status
- use uuid from E+M undefined status and move E+M term to existing vocabulary
- 06:08 PM bug #9476 (Closed): SpecimenTypeDesignations for existing names in other nom acts can not be created
- this is a regression caused by the changes made for #9324
To reproduce
* in registration workingset editor: ... - 06:07 PM bug #9475 (Resolved): NameTypeDesignations for existing names in other nom acts can not be created
- 05:51 PM bug #9475 (Closed): NameTypeDesignations for existing names in other nom acts can not be created
- this is a regression caused by the changes made for #9324
To reproduce
* in registration workingset editor: ... - 05:38 PM bug #8858: Ordering of distribution status 'undefined' is not correct in E+M
- Another solution is implementing #3816
- 05:20 PM bug #8858 (Resolved): Ordering of distribution status 'undefined' is not correct in E+M
- Fixed by adding ordering by vocabulary uuid to term ordering. This is a preliminary solution until ordering via order...
- 04:57 PM feature request #5779 (Closed): Update EuroPlusMedCondensedDistributionComposer to use new symbol field
- This should be fixed by fixing #8297 . E+M condensed distribution uses symbol2 now by default.
- 04:01 PM feature request #3907 (Closed): EuroMed: implement condensed "status" string of distribution information
- This is generally implemented. Open issues (and full refactoring) will be done in #8297
- 03:35 PM feature request #9474 (New): Creating a new Specimen/FieldUnit in Specimen Tree Editor with taxon association
- When a taxon is selected in specimen tree editor and a new fieldunit/specimen is created, the specimen should have an...
- 03:26 PM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
- Andreas Müller wrote:
> Andreas Müller wrote:
> > The exception is fixed now. However, the "delete the media data c... - 03:24 PM bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
- 03:23 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- Andreas Müller wrote:
> The exception is fixed now. However, the "delete the media data completely, even if ..." doe... - 03:14 PM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
- The configuration wizard is only shown for persisted media now and only if media exist.
The exception should not c... - 12:41 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- Also the configuration sould only show up if the image gallery is not empty. This is currently not the case.
And f... - 12:38 PM bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
- The exception is fixed now. However, the "delete the media data completely, even if ..." does not work. The media is ...
- 11:49 AM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
- this should be fixed.
- 12:57 PM bug #9467 (Resolved): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- Andreas Müller wrote:
> This is fixed and can be closed.
>
> By the way the default feature tree preference page ... - 12:33 PM bug #8767 (Resolved): Workflow support for publish flag
- Andreas Müller wrote:
> Katja Luther wrote:
> > I also adapted the changeSynonymToAcceptedTaxon, the newly created ... - 12:27 PM bug #9465 (Closed): Open in ... NameEditor for orphan taxa results in CCE
- Looks ok now
- 11:43 AM bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE
- Andreas Müller wrote:
> I can't see that any exception is thrown now ...
missed to commit DefaultOpenTaxonEditorF... - 10:51 AM bug #9465 (Feedback): Open in ... NameEditor for orphan taxa results in CCE
- I can't see that any exception is thrown now ...
- 10:14 AM bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE
- Andreas Müller wrote:
> Is fixed.
> Maybe we should think about an interface IHasUuid to avoid having generics like... - 11:47 AM bug #9472 (Closed): Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
- looks fine and works as expected (tested on turkish os)
- 10:32 AM bug #5670: Refresh of Taxon Navigator
- is this fixed/for review? If not can you leave a note on open issues?
- 10:16 AM feature request #9427 (Closed): Code cleaning in CdmPreferenceCache
- looks fine
02/23/2021
- 03:57 PM feature request #9340 (In Progress): Workflow support for secundum handling when making synonym a new accepted taxon
- the workflow for change synonym to accepted and accepted to synonym is adapted.
- 01:50 PM EDIT Platform Etablierung report #9378 (Closed): Meeting EDIT Platform documentation 2021-02-22
- **Ergebnisprotokoll** des Meetings: https://wiki.bgbm.org/bdinotes/index.php/BDI_299
02/22/2021
- 05:33 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- please call pull before fixing as I did code cleaning
- 05:32 PM bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
- If deleting even if media is linked a concurrent modification is thrown due to this code:
~~~
... - 04:47 PM bug #9467 (Feedback): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- This is fixed and can be closed.
By the way the default feature tree preference page allows multi-select (but stor... - 04:29 PM bug #9465 (Feedback): Open in ... NameEditor for orphan taxa results in CCE
- Is fixed.
Maybe we should think about an interface IHasUuid to avoid having generics like "extends DefaultOpenHandle... - 04:22 PM bug #9374 (Closed): ClassCastException when switching between media
- Difficult to test as it appears from time to time. So I think we can close this and reopen if it appears again.
- 04:21 PM bug #9471 (Closed): Widget is disposed exception when switching away from media before details view is completely loaded
- I couldn't reproduce it anymore by testing a few images I guess it is fixed. Reopen if it appears again.
- 04:17 PM bug #9466 (Closed): Termselection preference pages do not check the elements
- Seems to work.
- 10:38 AM feature request #9473 (New): Support moving images to new taxa similar to facts
- For a long time it is possible to move single facts or full description from one taxon to another taxon. This is curr...
02/19/2021
- 11:41 AM bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
- Andreas Kohlbecker wrote:
> Hallo Andreas, ich denke das ist auch für Euro+Med releveant, oder?
>
> Wenn ja, soll... - 11:11 AM bug #9472: Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
- Please review.
- 11:08 AM bug #9472 (Resolved): Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
- Applied in changeset commit:cdmlib|707e14fada836b1ff3fe6e83d0de6508baeb2bc6.
- 11:07 AM bug #9472 (Closed): Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
- The method
~~~
return this.name().toLowerCase();
~~~
seems to be encoding dependend, leading e.g. in Turkisc...
02/18/2021
- 12:52 PM bug #9466 (Resolved): Termselection preference pages do not check the elements
- This should be fixed, please review.
- 10:31 AM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
- For the gallery the dialog explicitly say that the gallery still contains media data and ask how to handle them. Plea...
02/17/2021
- 12:31 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- If this is in progress should we move it to current milestone?
- 12:31 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- For existing images we need the delete dialog that is true. I have not checked how the current dialog looks like but ...
- 12:25 PM bug #8198 (In Progress): Deleting an image gallery from image gallery view shows wrong configuration dialog
- 10:03 AM bug #8297: Fix condensed distribution string for E+M
- Diskussion mit AK über handling des CondensedDistributionString im Portal:
Derzeit werden Teile des Strings hardco... - 09:09 AM bug #8297 (In Progress): Fix condensed distribution string for E+M
- AM:
Wenn die Subareale beide z.B. indigenous sind, aber unterschiedliche Status haben, sollen die Hauptareale dann... - 09:08 AM bug #8297: Fix condensed distribution string for E+M
- AM:
Wenn es für ein Areal Unterareale gibt und diese haben einmal einen indigenous und einmal einen „foreign“ Sta...
02/16/2021
- 05:04 PM bug #9471 (Resolved): Widget is disposed exception when switching away from media before details view is completely loaded
- yes, this should be resolved. Please review.
- 04:48 PM bug #9471: Widget is disposed exception when switching away from media before details view is completely loaded
- is this resolved? (you mention it in #9374)
- 01:57 PM bug #9471 (Closed): Widget is disposed exception when switching away from media before details view is completely loaded
- When the media details view is not completely loaded and clicking on another element a "widget is disposed exception"...
- 02:28 PM bug #9374: ClassCastException when switching between media
- After fixing #9471 the problem seems to be fixed. Please have a look whether you still can reproduce the exception.
- 10:17 AM task #9359 (In Progress): Update cdmlib, taxeditor, cdmserver etc. dependencies
- 08:02 AM bug #9468: specimen type of existing name cannot be saved
- this seems to be a problem which stems from incomplete solution of #9290
- 08:01 AM bug #9468 (In Progress): specimen type of existing name cannot be saved
- This sees to happen with newly created registrations only.
~~~~
07:50:46.162 [phycobank] [qtp599984672-30] ERROR ... - 07:38 AM bug #9470 (Resolved): CollectionDTO constructor prevent from circles
- Applied in changeset commit:cdmlib|85d748e1311f1b1045ea33d07ebf5f0beb55e359.
- 07:30 AM bug #9470 (Closed): CollectionDTO constructor prevent from circles
- The constructor of CollectionDTO is being called recursively, to initialize also super collections.
Prevent from end...
02/15/2021
- 09:05 PM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
- Andreas Müller wrote:
> Have you also checked that no ROLE_PUBLISH with wrong UUID exists in existing production DBs... - 04:15 PM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
- Have you also checked that no ROLE_PUBLISH with wrong UUID exists in existing production DBs? (see ticket description)
- 03:52 PM bug #9469 (Closed): Searching for a UUID in bulkeditor which does not belong to a record throws an exception
- When searching for such a UUID a record is shown in the table but when clicking on the record the following exception...
- 03:36 PM bug #9468 (Worksforme): specimen type of existing name cannot be saved
- Test version:
existing name selected (ok)
specimen type entered including all mandatory fields (ok)
saving the rec... - 03:34 PM feature request #9296: Preference to show/not show infrageneric epithet for species
- WGB:
ist schon merkwürdig – ich bin mir eigentlich sicher, dass es das früher (bei botanischen Namen) nicht gab. E...
02/12/2021
- 03:51 PM bug #5670: Refresh of Taxon Navigator
- Refresh only the handled taxonnode for changes in taxa or names.
- 11:46 AM bug #8970 (Worksforme): Moving a taxon to another position often closes the parent nodes
- This seems to be fixed in the meanwhile, I can not reproduce it anymore.
- 11:38 AM bug #9467 (Resolved): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- This should be fixed, please review.
- 09:19 AM bug #9467 (Closed): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- The label provider for DefaultFeatureTreePreferences implements IBaseLabelProvider but should ILabelProvider.
~~~ ... - 11:28 AM bug #9465: Open in ... NameEditor for orphan taxa results in CCE
- This should be fixed. Please review.
- 11:27 AM bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE
- Applied in changeset commit:taxeditor|731536ea445abf9f0ef923b21913ef545c6305d4.
- 09:29 AM bug #9463: UniversalViewer causes jQuery version conflict and breaks maps
- work in progress in branch #9463-universalviewer-jquery-conflict
- 09:02 AM bug #9466 (Closed): Termselection preference pages do not check the elements
- The preference pages for term selection do not show the selected terms when opening. Saving of a new selection works ...
02/10/2021
- 04:58 PM bug #9465 (Closed): Open in ... NameEditor for orphan taxa results in CCE
- For orphan taxa "open in... " presents the possibility NameEditor but this results in a ClassCastException:
~~~ te... - 11:57 AM bug #9461: Filter in vaadin distribution editor does not work
- Andreas Müller wrote:
> The last commit seems to fix this issue. Can you please review.
Code changes look good. A... - 10:21 AM bug #6383 (In Progress): fatal error on git push: The remote end hung up unexpectedly
- bothered and thus "motivated" by the severe problems during the last two releases I returned to this issue.
For th... - 09:58 AM feature request #9464 (Duplicate): Show all team members in agent selection dialog
- This is very much related to #9326. Generelly we should store all authors in titleCache, not only the first3 or 4. On...
- 09:05 AM feature request #9464 (Duplicate): Show all team members in agent selection dialog
- TitleCache of teams does not contain all team members therefore it is difficult to differ teams with same first team ...
- 09:58 AM feature request #9326: Show all authors in bibliographic references
- Generally all authors should be stored in Agent.titleCache as mentioned in #9464. So we need to implement it there fi...
02/09/2021
- 04:18 PM bug #9461 (Resolved): Filter in vaadin distribution editor does not work
- The last commit seems to fix this issue. Can you please review.
- 10:53 AM bug #9461 (Resolved): Filter in vaadin distribution editor does not work
- Previously the filter in the distribution editor did throw an exception (see #7254 and #9457). This is not the case a...
- 04:16 PM bug #9457 (Closed): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- I created a new ticket for the non-working filter: #9461 . So I think we can close this ticket.
- 01:43 PM bug #9463 (In Progress): UniversalViewer causes jQuery version conflict and breaks maps
- 11:46 AM bug #9463 (In Progress): UniversalViewer causes jQuery version conflict and breaks maps
- When taxon pages are configured tab-less the image-viwer (Universalviewer - UV) is shown together with maps on the sa...
- 11:36 AM bug #9462 (New): polytomous key generated from structured descriptions supported
- Example:
https://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/polytomousKey/f36b96a1-92... - 11:19 AM bug #7254 (Worksforme): Filter in vaadin distribution editor throws exception
- An exception is not thrown anymore. However, the filter still does not work, therefore a new ticket was opened: #9461.
- 10:55 AM bug #9143: Distribution data sources are missing if multiple distributions exist
- ERS: Hi, this looks good now on the test portal for the mentioned areas.
- 10:02 AM bug #9143 (Closed): Distribution data sources are missing if multiple distributions exist
- I tested on test https://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/taxon/229a548c-fec8-4f15-9058-8...
- 09:57 AM bug #7529 (Closed): Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
- verified at some test databases: works as expected.
- 09:39 AM bug #6324 (Closed): fix dozer mapping after removal of synonym relations and after using TaxonNode
- 09:29 AM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
- Andreas Müller wrote:
> No there is no custom converter in use yet for field taxonNodes. But ofcourse we use it else... - 08:36 AM task #9460 (New): REST API tests
- see #9459 for general considerations which also apply to this task, at least to a significant extend.
- 08:17 AM task #9459 (New): REST API tests for UTIS
- There is already a test suite http://int.e-taxonomy.eu/jenkins/job/utis-jmeter-tests/ which could be repaired.
Oth...
02/08/2021
- 07:07 PM bug #9443 (Closed): Improve handling of TissueSamples and others in SpecimenTreeEditor
- looks fine and works as expected.
- 10:57 AM bug #9443: Improve handling of TissueSamples and others in SpecimenTreeEditor
- Katja, can you check the commits of this ticket again if they look ok? Generally this ticket was reverted, however th...
- 10:55 AM bug #9443: Improve handling of TissueSamples and others in SpecimenTreeEditor
- The commit message of the last commit "handling tissue samples as DerivedUnit" was incorrect. Should be "**revert** h...
- 07:01 PM bug #5670 (In Progress): Refresh of Taxon Navigator
- First issues:
- add a parameter whether the navigator should be updated or not.
- do not refresh the navigator ... - 04:49 PM bug #7287: Unit tests using the DefaultTermInitializer break subsequent integration tests in the suite
- Andreas Kohlbecker wrote:
> After using the new unit test base class TermTest for all test which need the terms to b... - 04:27 PM bug #9457 (Feedback): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- I aimed in testing the fix in the vaadin distribution editor itself ... the exception no longer occurs but no taxon r...
- 11:15 AM bug #9457: Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- By the way, please do not use the "cdmlib - Next Major Release" anymore. It is deprecated and will be closed soon, af...
- 11:13 AM bug #9457: Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- Can you please review. I only fixed in theory, did not test.
- 10:47 AM bug #9457 (Resolved): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- Applied in changeset commit:cdmlib|e0e956a86c917a9f70f0acbbd03eaebc2a7535cc.
- 10:29 AM bug #9457 (Closed): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- to reproduce:
* http://api.cybertaxonomy.org/flora-cuba/app/distribution
* Enter any string into the Taxon filter... - 03:22 PM bug #7529 (Resolved): Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
- Applied in changeset commit:cdmlib|b8dd2aa39122e68351a1591e11a4dc12751fdc2e.
- 02:59 PM bug #9351 (Closed): Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
- fixed in server-scripts:
~~~
svn ci -m "ref #9351 support for setting version in multiple projects & fixing some... - 12:04 PM task #9448 (In Progress): Remove all not e4 classes and rename "Remoting..." classes
- KL:
soweit ich es sehe, betraf das vor allem das io package, ich habe das aufgeräumt. An anderer Stelle habe ich n... - 11:48 AM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
- No there is no custom converter in use yet for field taxonNodes. But ofcourse we use it elsewhere e.g. here
~~~
... - 10:14 AM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
- I could not inspect all code changes in depth as this would require more time to dive into the whole topic of relatio...
- 11:15 AM bug #6450 (Resolved): New reference with only the protected titleCache set is not found in reference select dialog
- The problem was that if no abbrevTitle exists the titleCache was used, now the abbrevTitleCache.
- 10:45 AM task #9458 (Closed): Consider lower zoom level as default
- currently the default zoom level for maps is `15`
This causes two problems with occurrence maps
* some maps onl... - 09:02 AM bug #9456: Sources of Descriptive Datasets visible
- This is more or less a duplicate for #7716. We should think about closing it as a duplicate. This is not true if we r...
- 08:54 AM bug #9456 (New): Sources of Descriptive Datasets visible
- Sources of Descriptive Datasets are not yet shown in the Dataportal.
"Derzeit werden alle Datasets gemerged und di...
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