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From 01/28/2021 to 02/26/2021

02/26/2021

07:03 PM feature request #9484 (Rejected): Distinguish default hidden/fallback area handling from empty list of hidden/fallback area markers
The current default CondensedDistributionConfiguration uses the euro+med marker types for hidden and fallback areas a... Andreas Müller
06:23 PM bug #9475: NameTypeDesignations for existing names in other nom acts can not be created
existing genus name selected, fine.
Name type designation editor opened, fine.
Type selected, fine.
Species name ...
Wolf-Henning Kusber
03:42 PM bug #9475: NameTypeDesignations for existing names in other nom acts can not be created
please review Andreas Kohlbecker
06:17 PM bug #5206 (Closed): Status symbols in condensed distribution string repeated for subareas
This should be fixed and can be reviewed together with #8297. It is more or less a duplicate and therefore I close it. Andreas Müller
06:14 PM bug #9476: SpecimenTypeDesignations for existing names in other nom acts can not be created
works as expected, ticket can be closed. Wolf-Henning Kusber
03:44 PM bug #9476 (Resolved): SpecimenTypeDesignations for existing names in other nom acts can not be created
Andreas Kohlbecker
03:43 PM bug #9476 (In Progress): SpecimenTypeDesignations for existing names in other nom acts can not be created
please review Andreas Kohlbecker
06:06 PM bug #9480: SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
function as expected, ticket can be closed. Wolf-Henning Kusber
03:41 PM bug #9480: SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
please review Andreas Kohlbecker
01:53 PM bug #9480 (Resolved): SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
Applied in changeset commit:cdm-vaadin|8195658eef52a7189fd6c622d34b020516db9ed5. Andreas Kohlbecker
05:57 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
Review: Internal error when selecting variety of form, instead of opening a third field for the last epithet. Wolf-Henning Kusber
03:40 PM bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
please review Andreas Kohlbecker
02:38 PM bug #9483 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
Applied in changeset commit:cdmlib|e20135dca8ba5443b97814e31ad18cdc93036865. Andreas Kohlbecker
02:27 PM bug #9483 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
The LIE occurs in `public String rankSpecificNamePart()` at `rank.isHigher(Rank.GENUS())` which internally calls `Or... Andreas Kohlbecker
04:36 PM bug #9482 (Closed): NameTypeDesignationEditor: designationReference --> new causes LIE
Andreas Kohlbecker
04:00 PM bug #9482: NameTypeDesignationEditor: designationReference --> new causes LIE
limitation works already, only the LIE is a problem Andreas Kohlbecker
01:55 PM bug #9482: NameTypeDesignationEditor: designationReference --> new causes LIE
Currently creating new reference is blockes by a
~~~
org.hibernate.LazyInitializationException: could not initia...
Andreas Kohlbecker
01:53 PM bug #9482 (Closed): NameTypeDesignationEditor: designationReference --> new causes LIE
in some cases creating new reference is blocked by a
~~~
org.hibernate.LazyInitializationException: could not in...
Andreas Kohlbecker
12:08 PM bug #8297: Fix condensed distribution string for E+M
ERS:
für native: reported in error gilt das gleiche wie für introduced: reported in error, ein Minus - vor dem Kür...
Andreas Müller
12:07 PM bug #9481 (Closed): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
While swapping synonym to taxon, the descriptions are cloned but cannot be deleted with the old accepted taxon becaus... Katja Luther
11:35 AM bug #5670 (Resolved): Refresh of Taxon Navigator
I put this to resolved so I have it on the review list.
Before closing the ticket we should create a new ticket for ...
Andreas Müller
10:28 AM bug #5670: Refresh of Taxon Navigator
in #note-7 the steps already solved are described, if there are other issues we should create a new ticket or keep th... Katja Luther
11:32 AM feature request #9340 (Resolved): Workflow support for secundum handling when making synonym a new accepted taxon
I put this ticket to resolved so I have it in the review list. Before closing the ticket we should move open issues t... Andreas Müller
11:31 AM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Can you add a list to the description, which other operations are planned to have this workflow support? Andreas Müller
10:19 AM feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
please review the already implemented workflows Katja Luther
10:26 AM bug #7521 (Resolved): refresh of taxonnavigator sometimes does not work for moving taxonnodes
this should also be fixed while working on #5670 Katja Luther
10:09 AM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
works now Andreas Müller
10:08 AM bug #8198 (Closed): Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller
08:05 AM bug #8767 (Resolved): Workflow support for publish flag
implemented the publish check also for accepted to syn. Katja Luther
07:55 AM bug #9467 (Closed): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Andreas Müller wrote:
> Andreas Müller wrote:
> > Multi-select is still possible:
> > ![](picture658-1.png)
>
...
Katja Luther

02/25/2021

05:20 PM bug #9480 (Closed): SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
Andreas Kohlbecker
04:58 PM bug #9479 (Closed): ToOneRelatedEntityCombobox misses sending ValueChanged events to MBeanFieldGroup
Andreas Kohlbecker
03:05 PM bug #9479 (Resolved): ToOneRelatedEntityCombobox misses sending ValueChanged events to MBeanFieldGroup
Applied in changeset commit:cdm-vaadin|f2a3bcfd9db13c5182ad648cf848d50df85a78d1. Andreas Kohlbecker
03:03 PM bug #9479 (Closed): ToOneRelatedEntityCombobox misses sending ValueChanged events to MBeanFieldGroup
the SpecimenTypeDesignationDTORow contains the `ToOneRelatedEntityCombobox<Reference> designationReference`
The fie...
Andreas Kohlbecker
04:25 PM bug #8767: Workflow support for publish flag
Katja Luther wrote:
> Changing an unpublished accepted to a synonym of an published accepted taxon, how should we ha...
Andreas Müller
11:35 AM bug #8767: Workflow support for publish flag
Changing an unpublished accepted to a synonym of an published accepted taxon, how should we handle this? Keep the pub... Katja Luther
09:55 AM bug #8767: Workflow support for publish flag
By the way, currently this is handled as an info (i) but I think a warning would be better. Andreas Müller
09:54 AM bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> Accordingly we should check ALL operations to handle the publish flag correctly.
E.g. als...
Andreas Müller
09:49 AM bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> The message pops up 2x now
I can not reproduce this anymore.
Andreas Müller
09:45 AM bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> The message pops up 2x now
With the actual nightly build I can not reproduce this.
Katja Luther
09:42 AM bug #8767: Workflow support for publish flag
Accordingly we should check ALL operations to handle the publish flag correctly. Andreas Müller
09:42 AM bug #8767: Workflow support for publish flag
Also swapping synonym with accepted has strange behavior: only the names swap but the publish flag stays. E.g. if old... Andreas Müller
09:26 AM bug #8767 (Feedback): Workflow support for publish flag
The message pops up 2x now Andreas Müller
04:23 PM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Andreas Müller wrote:
> Multi-select is still possible:
> ![](picture658-1.png)
If this is fixed, yes.
Andreas Müller
11:30 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
so we can close this ticket? Katja Luther
10:01 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Katja Luther wrote:
> Andreas Müller wrote:
> > Wir sollten auch das Label noch anpassen für beide Fenster.
> >
...
Andreas Müller
10:00 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Im Deutschen: Default Merkmalsbaum => ...
Katja Luther
09:59 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Katja Luther wrote:
> Andreas Müller wrote:
> > Im Deutschen: Default Merkmalsbaum => Standard Merkmalsbaum
Is t...
Andreas Müller
09:24 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Andreas Müller wrote:
> Wir sollten auch das Label noch anpassen für beide Fenster.
>
> Im Deutschen: Default Mer...
Katja Luther
09:11 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Außerdem sollten wir die Reihenfolge ändern, die nat. lang. descriptions sind unwichtig, und sollten daher nach unten Andreas Müller
09:10 AM bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Wir sollten auch das Label noch anpassen für beide Fenster.
Im Deutschen: Default Merkmalsbaum => Standard Merkmal...
Andreas Müller
08:56 AM bug #9467 (Feedback): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Multi-select is still possible:
![](picture658-1.png)
Andreas Müller
02:48 PM bug #9478 (Resolved): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
Applied in changeset commit:cdm-vaadin|36c60299426da3a4ae7f9c90ba0568d8e9e64402. Andreas Kohlbecker
02:41 PM bug #9478 (In Progress): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
Andreas Kohlbecker
02:38 PM bug #9478 (Closed): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
the SpecimenTypeDesignationDTORow contains the `ToOneRelatedEntityCombobox<Reference> designationReference`
When se...
Andreas Kohlbecker
11:28 AM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
Katja Luther
10:24 AM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller wrote:
> Katja Luther wrote:
> > The configuration wizard is only shown for persisted media now and ...
Katja Luther
10:12 AM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > The exception is fixed now. However, t...
Andreas Müller
10:08 AM bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller
10:06 AM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
Katja Luther wrote:
> The configuration wizard is only shown for persisted media now and only if media exist.
it ...
Andreas Müller
10:27 AM bug #9477 (Closed): New ordered terms do not have correct order index
If a new term is added to a new ordered term vocabulary the term is not put to the correct position. Instead it is mo... Andreas Müller

02/24/2021

11:15 PM bug #8297: Fix condensed distribution string for E+M
AM:
für folgende Status bräuchte ich noch die korrekten Symbole:
• native: reported in error => „-“ ? Genaus...
Andreas Müller
04:07 PM bug #8297: Fix condensed distribution string for E+M
ERS (2020-06-23):
Unterareale sollten ja eigentlich in Klammern nach dem Hauptareal zusammengefasst werden, also d...
Andreas Müller
03:27 PM bug #8297: Fix condensed distribution string for E+M
Bellis perennis on test: http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/taxon/0eb6ca37-3365-4af5... Andreas Müller
10:03 PM feature request #3816 (Resolved): Create "Undefined" status and choose it for NULL status
I added the term. We should split the update script to another ticket. Andreas Müller
05:39 PM feature request #3816: Create "Undefined" status and choose it for NULL status
The new status should be last in vocabulary as discussed for ordering in E+M Andreas Müller
05:37 PM feature request #3816: Create "Undefined" status and choose it for NULL status
use uuid from E+M undefined status and move E+M term to existing vocabulary Andreas Müller
06:08 PM bug #9476 (Closed): SpecimenTypeDesignations for existing names in other nom acts can not be created
this is a regression caused by the changes made for #9324
To reproduce
* in registration workingset editor: ...
Andreas Kohlbecker
06:07 PM bug #9475 (Resolved): NameTypeDesignations for existing names in other nom acts can not be created
Andreas Kohlbecker
05:51 PM bug #9475 (Closed): NameTypeDesignations for existing names in other nom acts can not be created
this is a regression caused by the changes made for #9324
To reproduce
* in registration workingset editor: ...
Andreas Kohlbecker
05:38 PM bug #8858: Ordering of distribution status 'undefined' is not correct in E+M
Another solution is implementing #3816 Andreas Müller
05:20 PM bug #8858 (Resolved): Ordering of distribution status 'undefined' is not correct in E+M
Fixed by adding ordering by vocabulary uuid to term ordering. This is a preliminary solution until ordering via order... Andreas Müller
04:57 PM feature request #5779 (Closed): Update EuroPlusMedCondensedDistributionComposer to use new symbol field
This should be fixed by fixing #8297 . E+M condensed distribution uses symbol2 now by default. Andreas Müller
04:01 PM feature request #3907 (Closed): EuroMed: implement condensed "status" string of distribution information
This is generally implemented. Open issues (and full refactoring) will be done in #8297 Andreas Müller
03:35 PM feature request #9474 (New): Creating a new Specimen/FieldUnit in Specimen Tree Editor with taxon association
When a taxon is selected in specimen tree editor and a new fieldunit/specimen is created, the specimen should have an... Katja Luther
03:26 PM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller wrote:
> Andreas Müller wrote:
> > The exception is fixed now. However, the "delete the media data c...
Katja Luther
03:24 PM bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller
03:23 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller wrote:
> The exception is fixed now. However, the "delete the media data completely, even if ..." doe...
Andreas Müller
03:14 PM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
The configuration wizard is only shown for persisted media now and only if media exist.
The exception should not c...
Katja Luther
12:41 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
Also the configuration sould only show up if the image gallery is not empty. This is currently not the case.
And f...
Andreas Müller
12:38 PM bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
The exception is fixed now. However, the "delete the media data completely, even if ..." does not work. The media is ... Andreas Müller
11:49 AM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
this should be fixed. Katja Luther
12:57 PM bug #9467 (Resolved): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Andreas Müller wrote:
> This is fixed and can be closed.
>
> By the way the default feature tree preference page ...
Katja Luther
12:33 PM bug #8767 (Resolved): Workflow support for publish flag
Andreas Müller wrote:
> Katja Luther wrote:
> > I also adapted the changeSynonymToAcceptedTaxon, the newly created ...
Katja Luther
12:27 PM bug #9465 (Closed): Open in ... NameEditor for orphan taxa results in CCE
Looks ok now Andreas Müller
11:43 AM bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE
Andreas Müller wrote:
> I can't see that any exception is thrown now ...
missed to commit DefaultOpenTaxonEditorF...
Katja Luther
10:51 AM bug #9465 (Feedback): Open in ... NameEditor for orphan taxa results in CCE
I can't see that any exception is thrown now ... Andreas Müller
10:14 AM bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE
Andreas Müller wrote:
> Is fixed.
> Maybe we should think about an interface IHasUuid to avoid having generics like...
Katja Luther
11:47 AM bug #9472 (Closed): Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
looks fine and works as expected (tested on turkish os) Katja Luther
10:32 AM bug #5670: Refresh of Taxon Navigator
is this fixed/for review? If not can you leave a note on open issues? Andreas Müller
10:16 AM feature request #9427 (Closed): Code cleaning in CdmPreferenceCache
looks fine Katja Luther

02/23/2021

03:57 PM feature request #9340 (In Progress): Workflow support for secundum handling when making synonym a new accepted taxon
the workflow for change synonym to accepted and accepted to synonym is adapted. Katja Luther
01:50 PM EDIT Platform Etablierung report #9378 (Closed): Meeting EDIT Platform documentation 2021-02-22
**Ergebnisprotokoll** des Meetings: https://wiki.bgbm.org/bdinotes/index.php/BDI_299 Andreas Kohlbecker

02/22/2021

05:33 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
please call pull before fixing as I did code cleaning Andreas Müller
05:32 PM bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
If deleting even if media is linked a concurrent modification is thrown due to this code:
~~~
...
Andreas Müller
04:47 PM bug #9467 (Feedback): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
This is fixed and can be closed.
By the way the default feature tree preference page allows multi-select (but stor...
Andreas Müller
04:29 PM bug #9465 (Feedback): Open in ... NameEditor for orphan taxa results in CCE
Is fixed.
Maybe we should think about an interface IHasUuid to avoid having generics like "extends DefaultOpenHandle...
Andreas Müller
04:22 PM bug #9374 (Closed): ClassCastException when switching between media
Difficult to test as it appears from time to time. So I think we can close this and reopen if it appears again. Andreas Müller
04:21 PM bug #9471 (Closed): Widget is disposed exception when switching away from media before details view is completely loaded
I couldn't reproduce it anymore by testing a few images I guess it is fixed. Reopen if it appears again. Andreas Müller
04:17 PM bug #9466 (Closed): Termselection preference pages do not check the elements
Seems to work. Andreas Müller
10:38 AM feature request #9473 (New): Support moving images to new taxa similar to facts
For a long time it is possible to move single facts or full description from one taxon to another taxon. This is curr... Andreas Müller

02/19/2021

11:41 AM bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
Andreas Kohlbecker wrote:
> Hallo Andreas, ich denke das ist auch für Euro+Med releveant, oder?
>
> Wenn ja, soll...
Andreas Müller
11:11 AM bug #9472: Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
Please review. Andreas Müller
11:08 AM bug #9472 (Resolved): Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
Applied in changeset commit:cdmlib|707e14fada836b1ff3fe6e83d0de6508baeb2bc6. Andreas Müller
11:07 AM bug #9472 (Closed): Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
The method
~~~
return this.name().toLowerCase();
~~~
seems to be encoding dependend, leading e.g. in Turkisc...
Andreas Müller

02/18/2021

12:52 PM bug #9466 (Resolved): Termselection preference pages do not check the elements
This should be fixed, please review. Katja Luther
10:31 AM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
For the gallery the dialog explicitly say that the gallery still contains media data and ask how to handle them. Plea... Katja Luther

02/17/2021

12:31 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
If this is in progress should we move it to current milestone? Andreas Müller
12:31 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
For existing images we need the delete dialog that is true. I have not checked how the current dialog looks like but ... Andreas Müller
12:25 PM bug #8198 (In Progress): Deleting an image gallery from image gallery view shows wrong configuration dialog
Katja Luther
10:03 AM bug #8297: Fix condensed distribution string for E+M
Diskussion mit AK über handling des CondensedDistributionString im Portal:
Derzeit werden Teile des Strings hardco...
Andreas Müller
09:09 AM bug #8297 (In Progress): Fix condensed distribution string for E+M
AM:
Wenn die Subareale beide z.B. indigenous sind, aber unterschiedliche Status haben, sollen die Hauptareale dann...
Andreas Müller
09:08 AM bug #8297: Fix condensed distribution string for E+M
AM:
Wenn es für ein Areal Unterareale gibt und diese haben einmal einen indigenous und einmal einen „foreign“ Sta...
Andreas Müller

02/16/2021

05:04 PM bug #9471 (Resolved): Widget is disposed exception when switching away from media before details view is completely loaded
yes, this should be resolved. Please review. Katja Luther
04:48 PM bug #9471: Widget is disposed exception when switching away from media before details view is completely loaded
is this resolved? (you mention it in #9374) Andreas Müller
01:57 PM bug #9471 (Closed): Widget is disposed exception when switching away from media before details view is completely loaded
When the media details view is not completely loaded and clicking on another element a "widget is disposed exception"... Katja Luther
02:28 PM bug #9374: ClassCastException when switching between media
After fixing #9471 the problem seems to be fixed. Please have a look whether you still can reproduce the exception. Katja Luther
10:17 AM task #9359 (In Progress): Update cdmlib, taxeditor, cdmserver etc. dependencies
Andreas Müller
08:02 AM bug #9468: specimen type of existing name cannot be saved
this seems to be a problem which stems from incomplete solution of #9290 Andreas Kohlbecker
08:01 AM bug #9468 (In Progress): specimen type of existing name cannot be saved
This sees to happen with newly created registrations only.
~~~~
07:50:46.162 [phycobank] [qtp599984672-30] ERROR ...
Andreas Kohlbecker
07:38 AM bug #9470 (Resolved): CollectionDTO constructor prevent from circles
Applied in changeset commit:cdmlib|85d748e1311f1b1045ea33d07ebf5f0beb55e359. Andreas Kohlbecker
07:30 AM bug #9470 (Closed): CollectionDTO constructor prevent from circles
The constructor of CollectionDTO is being called recursively, to initialize also super collections.
Prevent from end...
Andreas Kohlbecker

02/15/2021

09:05 PM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
Andreas Müller wrote:
> Have you also checked that no ROLE_PUBLISH with wrong UUID exists in existing production DBs...
Andreas Kohlbecker
04:15 PM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
Have you also checked that no ROLE_PUBLISH with wrong UUID exists in existing production DBs? (see ticket description) Andreas Müller
03:52 PM bug #9469 (Closed): Searching for a UUID in bulkeditor which does not belong to a record throws an exception
When searching for such a UUID a record is shown in the table but when clicking on the record the following exception... Andreas Müller
03:36 PM bug #9468 (Worksforme): specimen type of existing name cannot be saved
Test version:
existing name selected (ok)
specimen type entered including all mandatory fields (ok)
saving the rec...
Wolf-Henning Kusber
03:34 PM feature request #9296: Preference to show/not show infrageneric epithet for species
WGB:
ist schon merkwürdig – ich bin mir eigentlich sicher, dass es das früher (bei botanischen Namen) nicht gab. E...
Andreas Müller

02/12/2021

03:51 PM bug #5670: Refresh of Taxon Navigator
Refresh only the handled taxonnode for changes in taxa or names. Katja Luther
11:46 AM bug #8970 (Worksforme): Moving a taxon to another position often closes the parent nodes
This seems to be fixed in the meanwhile, I can not reproduce it anymore. Katja Luther
11:38 AM bug #9467 (Resolved): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
This should be fixed, please review. Katja Luther
09:19 AM bug #9467 (Closed): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
The label provider for DefaultFeatureTreePreferences implements IBaseLabelProvider but should ILabelProvider.
~~~ ...
Katja Luther
11:28 AM bug #9465: Open in ... NameEditor for orphan taxa results in CCE
This should be fixed. Please review. Katja Luther
11:27 AM bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE
Applied in changeset commit:taxeditor|731536ea445abf9f0ef923b21913ef545c6305d4. Katja Luther
09:29 AM bug #9463: UniversalViewer causes jQuery version conflict and breaks maps
work in progress in branch #9463-universalviewer-jquery-conflict Andreas Kohlbecker
09:02 AM bug #9466 (Closed): Termselection preference pages do not check the elements
The preference pages for term selection do not show the selected terms when opening. Saving of a new selection works ... Katja Luther

02/10/2021

04:58 PM bug #9465 (Closed): Open in ... NameEditor for orphan taxa results in CCE
For orphan taxa "open in... " presents the possibility NameEditor but this results in a ClassCastException:
~~~ te...
Katja Luther
11:57 AM bug #9461: Filter in vaadin distribution editor does not work
Andreas Müller wrote:
> The last commit seems to fix this issue. Can you please review.
Code changes look good. A...
Andreas Kohlbecker
10:21 AM bug #6383 (In Progress): fatal error on git push: The remote end hung up unexpectedly
bothered and thus "motivated" by the severe problems during the last two releases I returned to this issue.
For th...
Andreas Kohlbecker
09:58 AM feature request #9464 (Duplicate): Show all team members in agent selection dialog
This is very much related to #9326. Generelly we should store all authors in titleCache, not only the first3 or 4. On... Andreas Müller
09:05 AM feature request #9464 (Duplicate): Show all team members in agent selection dialog
TitleCache of teams does not contain all team members therefore it is difficult to differ teams with same first team ... Katja Luther
09:58 AM feature request #9326: Show all authors in bibliographic references
Generally all authors should be stored in Agent.titleCache as mentioned in #9464. So we need to implement it there fi... Andreas Müller

02/09/2021

04:18 PM bug #9461 (Resolved): Filter in vaadin distribution editor does not work
The last commit seems to fix this issue. Can you please review. Andreas Müller
10:53 AM bug #9461 (Resolved): Filter in vaadin distribution editor does not work
Previously the filter in the distribution editor did throw an exception (see #7254 and #9457). This is not the case a... Andreas Müller
04:16 PM bug #9457 (Closed): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
I created a new ticket for the non-working filter: #9461 . So I think we can close this ticket. Andreas Müller
01:43 PM bug #9463 (In Progress): UniversalViewer causes jQuery version conflict and breaks maps
Andreas Kohlbecker
11:46 AM bug #9463 (In Progress): UniversalViewer causes jQuery version conflict and breaks maps
When taxon pages are configured tab-less the image-viwer (Universalviewer - UV) is shown together with maps on the sa... Andreas Kohlbecker
11:36 AM bug #9462 (New): polytomous key generated from structured descriptions supported
Example:
https://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/polytomousKey/f36b96a1-92...
Andreas Kohlbecker
11:19 AM bug #7254 (Worksforme): Filter in vaadin distribution editor throws exception
An exception is not thrown anymore. However, the filter still does not work, therefore a new ticket was opened: #9461. Andreas Müller
10:55 AM bug #9143: Distribution data sources are missing if multiple distributions exist
ERS: Hi, this looks good now on the test portal for the mentioned areas. Andreas Müller
10:02 AM bug #9143 (Closed): Distribution data sources are missing if multiple distributions exist
I tested on test https://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/taxon/229a548c-fec8-4f15-9058-8... Andreas Müller
09:57 AM bug #7529 (Closed): Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
verified at some test databases: works as expected. Andreas Kohlbecker
09:39 AM bug #6324 (Closed): fix dozer mapping after removal of synonym relations and after using TaxonNode
Andreas Müller
09:29 AM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
Andreas Müller wrote:
> No there is no custom converter in use yet for field taxonNodes. But ofcourse we use it else...
Andreas Kohlbecker
08:36 AM task #9460 (New): REST API tests
see #9459 for general considerations which also apply to this task, at least to a significant extend. Andreas Kohlbecker
08:17 AM task #9459 (New): REST API tests for UTIS
There is already a test suite http://int.e-taxonomy.eu/jenkins/job/utis-jmeter-tests/ which could be repaired.
Oth...
Andreas Kohlbecker

02/08/2021

07:07 PM bug #9443 (Closed): Improve handling of TissueSamples and others in SpecimenTreeEditor
looks fine and works as expected. Katja Luther
10:57 AM bug #9443: Improve handling of TissueSamples and others in SpecimenTreeEditor
Katja, can you check the commits of this ticket again if they look ok? Generally this ticket was reverted, however th... Andreas Müller
10:55 AM bug #9443: Improve handling of TissueSamples and others in SpecimenTreeEditor
The commit message of the last commit "handling tissue samples as DerivedUnit" was incorrect. Should be "**revert** h... Andreas Müller
07:01 PM bug #5670 (In Progress): Refresh of Taxon Navigator
First issues:
- add a parameter whether the navigator should be updated or not.
- do not refresh the navigator ...
Katja Luther
04:49 PM bug #7287: Unit tests using the DefaultTermInitializer break subsequent integration tests in the suite
Andreas Kohlbecker wrote:
> After using the new unit test base class TermTest for all test which need the terms to b...
Andreas Müller
04:27 PM bug #9457 (Feedback): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
I aimed in testing the fix in the vaadin distribution editor itself ... the exception no longer occurs but no taxon r... Andreas Kohlbecker
11:15 AM bug #9457: Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
By the way, please do not use the "cdmlib - Next Major Release" anymore. It is deprecated and will be closed soon, af... Andreas Müller
11:13 AM bug #9457: Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
Can you please review. I only fixed in theory, did not test. Andreas Müller
10:47 AM bug #9457 (Resolved): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
Applied in changeset commit:cdmlib|e0e956a86c917a9f70f0acbbd03eaebc2a7535cc. Andreas Müller
10:29 AM bug #9457 (Closed): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
to reproduce:
* http://api.cybertaxonomy.org/flora-cuba/app/distribution
* Enter any string into the Taxon filter...
Andreas Kohlbecker
03:22 PM bug #7529 (Resolved): Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
Applied in changeset commit:cdmlib|b8dd2aa39122e68351a1591e11a4dc12751fdc2e. Andreas Kohlbecker
02:59 PM bug #9351 (Closed): Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
fixed in server-scripts:
~~~
svn ci -m "ref #9351 support for setting version in multiple projects & fixing some...
Andreas Kohlbecker
12:04 PM task #9448 (In Progress): Remove all not e4 classes and rename "Remoting..." classes
KL:
soweit ich es sehe, betraf das vor allem das io package, ich habe das aufgeräumt. An anderer Stelle habe ich n...
Andreas Müller
11:48 AM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
No there is no custom converter in use yet for field taxonNodes. But ofcourse we use it elsewhere e.g. here
~~~
...
Andreas Müller
10:14 AM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
I could not inspect all code changes in depth as this would require more time to dive into the whole topic of relatio... Andreas Kohlbecker
11:15 AM bug #6450 (Resolved): New reference with only the protected titleCache set is not found in reference select dialog
The problem was that if no abbrevTitle exists the titleCache was used, now the abbrevTitleCache. Katja Luther
10:45 AM task #9458 (Closed): Consider lower zoom level as default
currently the default zoom level for maps is `15`
This causes two problems with occurrence maps
* some maps onl...
Andreas Kohlbecker
09:02 AM bug #9456: Sources of Descriptive Datasets visible
This is more or less a duplicate for #7716. We should think about closing it as a duplicate. This is not true if we r... Andreas Müller
08:54 AM bug #9456 (New): Sources of Descriptive Datasets visible
Sources of Descriptive Datasets are not yet shown in the Dataportal.
"Derzeit werden alle Datasets gemerged und di...
Andreas Kohlbecker

02/06/2021

10:10 PM feature request #9427: Code cleaning in CdmPreferenceCache
I did some further reduncancy removal. Please check the code and test once if loading still works as expected. Then w... Andreas Müller
09:54 PM bug #9143 (Resolved): Distribution data sources are missing if multiple distributions exist
Andreas Müller
06:44 PM feature request #5575 (Resolved): DNA Sample requires CacheStrategy
Andreas Müller

02/05/2021

06:47 PM feature request #9434 (Closed): Add pollen, leaf and trichomes to tissue sample kind-of-unit vocabulary
New terms are available on test server instances. So it sees to work and I close the ticket. Andreas Müller
06:45 PM bug #9426 (Closed): Set publish flag for Synonyms in accordance with accepted taxon publish flag
Works as expected Andreas Müller
06:39 PM bug #5095 (Closed): Fix failing dozer related tests
I fixed the variable name.
http://memory.loc.gov testing is not part of this ticket therefore I close this ticket....
Andreas Müller
10:35 AM bug #5095: Fix failing dozer related tests
code changes look good, test are all successful so the ticket is solved and can be closed.
I am a bit concerned th...
Andreas Kohlbecker
06:04 PM feature request #5575: DNA Sample requires CacheStrategy
As TissueSample are currently still handled as DnaSample modellwise (to allow adding of sequences directly without Dn... Andreas Müller
06:02 PM task #9455 (New): Merge DnaSample and DerivedUnit
In general we do not want to have too many classes to avoid transformation problems and for other reasons (see TaxonN... Andreas Müller
05:56 PM bug #9443: Improve handling of TissueSamples and others in SpecimenTreeEditor
Still need to check if AddXXX handlers now work as expected and as before. Andreas Müller
05:55 PM bug #9443 (Resolved): Improve handling of TissueSamples and others in SpecimenTreeEditor
Saving as DerivedUnit needs to be reverted as we want to allow also TissueSample to have DNA Sequences attached direc... Andreas Müller
05:50 PM task #9451 (Resolved): Cache strategy for classifications is missing
Please review Andreas Müller
05:49 PM task #9451 (New): Cache strategy for classifications is missing
Andreas Müller
05:24 PM task #9454 (New): [DISCUSS] Decide on using dozer or similar frameworks for mapping DTOs
Dozer or similar frameworks (https://stackoverflow.com/questions/1432764/any-tool-for-java-object-to-object-mapping) ... Andreas Müller
04:57 PM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
The mapping was not only corrupt for synonyms but also for TaxonNodes as they were not mapped as taxon relations yet.... Andreas Müller
01:26 PM bug #6324 (Resolved): fix dozer mapping after removal of synonym relations and after using TaxonNode
Applied in changeset commit:cdmlib|f278f0365262de31e73b9f4bf7e442e60e3a60db. Andreas Müller
11:36 AM feature request #8975 (Closed): Name Status filtered in UI
Andreas Kohlbecker
11:31 AM feature request #8975: Name Status filtered in UI
Yes Wolf-Henning Kusber
11:20 AM feature request #8975 (Feedback): Name Status filtered in UI
Order changed to
~~~
NomenclaturalStatusType.CONSERVED(),
NomenclaturalStatusType.CON...
Andreas Kohlbecker
11:11 AM bug #9452: Name Type Editor: allowed combination of fields
put in version:"Phycobank ready for submitters" when not solved in version:"Release 5.20" Andreas Kohlbecker
11:06 AM bug #9452: Name Type Editor: allowed combination of fields
solution:
1. radiobuttons for "rejected", "conserved", "Not typified"
2. hide TypeName field when "Not typified" ...
Andreas Kohlbecker
11:00 AM feature request #9324 (Closed): Enable designation reference editing in name type designation
> Note 3: proposed types for rejection/conservation with references are missing.
we (Henning & Andreas) decided t...
Andreas Kohlbecker
10:45 AM feature request #9324: Enable designation reference editing in name type designation
example for Note 3: proposed types for rejection/conservation with references are missing.
species
Achnanthes...
Wolf-Henning Kusber
10:14 AM feature request #9324 (Feedback): Enable designation reference editing in name type designation
Wolf-Henning Kusber wrote:
> Allowing null selection for type status in name type designation editor implemented.
>...
Andreas Kohlbecker
10:00 AM bug #9453 (New): Implement NameDesignationBase.hasDesignationSource() which takes isRejected and isConserved into account
`TypeDesignationBase.hasDesignationSource()`currently directly delegates to TypeDesignationStatusBase.hasDesignationS... Andreas Kohlbecker
08:54 AM bug #8522 (Closed): Make type status mandatory in Name type designation editor
Andreas Kohlbecker
08:52 AM feature request #8981 (Feedback): Improve NameStatus in UI
I see that there are remaining requests like "Reference is restricted to a given list of Codes
Code edition was adde...
Andreas Kohlbecker
08:45 AM bug #8140 (Feedback): Update list of type designation status which allow an explicit source
in #9301 Henning
pointed out that: "paralectotype (enabled)-> reference should be disabled like the other paraty...
Andreas Kohlbecker
08:43 AM feature request #9301 (Closed): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
Wolf-Henning Kusber wrote:
> Works as expected.
>
>
> paralectotype (enabled)-> reference should be disabled li...
Andreas Kohlbecker
08:13 AM bug #9290 (Closed): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
Andreas Kohlbecker

02/04/2021

10:18 PM feature request #4716 (Closed): Other dependencies to be updated
Andreas Müller
07:36 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
Reference is now selectable in relevant cases, but not anymore a default. Wolf-Henning Kusber
07:32 PM feature request #9301: SpecimenTypeDesignationEditor: Add fields for citation and citationDetail

Works as expected.
paralectotype (enabled)-> reference should be disabled like the other paratypes (see above)
Wolf-Henning Kusber
07:15 PM feature request #8981: Improve NameStatus in UI
The functionality shown in the second screen is implemented and works. Wolf-Henning Kusber
07:05 PM feature request #8975: Name Status filtered in UI
The filtering is fine.
I could live with this order of the filtered terms.
But I would like also:
First the b...
Wolf-Henning Kusber
06:53 PM bug #9452 (Closed): Name Type Editor: allowed combination of fields
The Name type editor needs some fine tuning:
"not typified" (only) must not combined with a scientific name for lo...
Wolf-Henning Kusber
06:46 PM bug #8522: Make type status mandatory in Name type designation editor
works as expected, ticket can be closed Wolf-Henning Kusber
06:32 PM feature request #9324: Enable designation reference editing in name type designation
Allowing null selection for type status in name type designation editor implemented.
Is functioning as expected.
...
Wolf-Henning Kusber
06:32 PM bug #5095: Fix failing dozer related tests
please review Andreas Müller
06:30 PM bug #5095 (Resolved): Fix failing dozer related tests
Applied in changeset commit:cdmlib|523a6c95979f449c49f9723f7d080d3cf6013cf8. Andreas Müller
02:59 PM bug #9247 (Duplicate): Link with taxon does not work correctly
this is an exact duplicate of #9264 (even the same description text) Andreas Müller
02:22 PM bug #9247 (Worksforme): Link with taxon does not work correctly
This works now. Also if synonyms are selected. Katja Luther
01:43 PM bug #8767 (Feedback): Workflow support for publish flag
Katja Luther wrote:
> I also adapted the changeSynonymToAcceptedTaxon, the newly created taxon has the same publish ...
Andreas Müller
09:10 AM bug #8767 (Resolved): Workflow support for publish flag
Katja Luther
08:47 AM bug #8767: Workflow support for publish flag
This is fixed, also for pp synonyms.
I also adapted the changeSynonymToAcceptedTaxon, the newly created taxon has ...
Katja Luther
12:31 PM bug #8824 (Worksforme): No dirty flag when adding new factual data set
Seems to be fixed in the meanwhile. Katja Luther
10:54 AM feature request #9427: Code cleaning in CdmPreferenceCache
Please have a look. Katja Luther
10:53 AM feature request #9427 (Resolved): Code cleaning in CdmPreferenceCache
Applied in changeset commit:taxeditor|a5c094d3aeed06649e96b33d5779d86c3e92b5a3. Katja Luther
09:31 AM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor
I moved it to 5.11 Andreas Müller
08:55 AM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor
this ticket should still be in Release 5.11 but this MS has been closed, so it will be without until closed
Review i...
Andreas Kohlbecker
09:03 AM bug #9426 (Resolved): Set publish flag for Synonyms in accordance with accepted taxon publish flag
please review Katja Luther

02/03/2021

04:48 PM feature request #8611: [DISCUSS] how to handle editor teams
This is a model issue therefore I did change category and target version. Andreas Müller
03:44 PM bug #9386: orthographic variants should not be symmetrical
AM:
nein, nur die bisherige Beziehung umdeuten ist natürlich nicht geplant.
Eher sollte es so aussehen:
• Es...
Andreas Müller
03:39 PM bug #9386: orthographic variants should not be symmetrical
WGB:
ich bin nur nicht damit einverstanden, dass man das existierende Label einfach asymmetrisch macht. Das klang ...
Andreas Müller
01:13 PM task #9451 (Resolved): Cache strategy for classifications is missing
Applied in changeset commit:cdmlib|1d67f2ce2878bb557d58827fa3d7f4047715c54c. Andreas Müller
01:12 PM task #9451 (Closed): Cache strategy for classifications is missing
Currently generateTitle() is implemented within the Classification class itself. Andreas Müller
10:09 AM bug #9450: Save reverts previous changes in NameEditor
Could not reproduce this problem.
I tried it started the editor out of my workspace but could not reproduce this is...
Katja Luther
09:54 AM bug #9450 (New): Save reverts previous changes in NameEditor
mail WGB:
Hallo, wir haben bei Polygala leptocuaulis erst die Secundum Referenz des Taxon geändert, dann den Autor...
Katja Luther
08:40 AM bug #7633: MySQLIntegrityConstraintViolationException - Duplicate entry during fact editing
same exception for changing err. sec and sensu (sec.) reference:
~~~ text
last remote method : http://api.cyber...
Katja Luther
07:59 AM feature request #6016 (Rejected): ICN rules in cdm validation framework implemented
rejecting this ticket since #6015 has also been rejected, see comments there Andreas Kohlbecker
07:37 AM bug #9449 (New): Classes handling Dtos should not enherit from ICdmEntitySessionEnabled
mail AM:
beim Ticketreview bin ich gerade darauf gestoßen, dass ICdmEntitySessionEnabled die Methode
public Co...
Katja Luther
07:33 AM task #9448 (In Progress): Remove all not e4 classes and rename "Remoting..." classes
For a lot of classes there are e4 and not e4 versions, the not e4 versions are not needed anymore therefore we can re... Katja Luther

02/02/2021

06:50 PM feature request #9447 (New): Allow editing derivation events with multiple originals in specimen tree editor
Currently the specimen tree editor only allows derivation hierarchies with derivation events having only 1 "original"... Andreas Müller
06:27 PM feature request #9446 (New): Define possible derivation paths in SpecimenOrObservationType
Even in theory, not all specimenOrObservation types can be derived from all specimenOrObservation types.
We may wa...
Andreas Müller
06:06 PM task #9445 (New): [DISCUSS] Should GatheringEvent have descriptive data
Currently descriptive data on the gathering site such as ecology data, site images or water quality parameters for wa... Andreas Müller
05:54 PM feature request #9444 (New): Allow showing, editing and reusing GatheringEvent in specimen tree editor
Currently the highes level of units in the derivative tree editor is the field unit. However, in the model and in rea... Andreas Müller
02:50 PM bug #9443 (In Progress): Improve handling of TissueSamples and others in SpecimenTreeEditor
The saving as Derived unit has been implemented in 5.19 already (a3b7c1e7f7b79) so it is now high priority to also re... Andreas Müller
02:48 PM bug #9443 (Closed): Improve handling of TissueSamples and others in SpecimenTreeEditor
Tissue Samples are handled stored as DnaSample in specimen tree editor which is not correct as they never can have an... Andreas Müller
02:26 PM feature request #9442 (New): Show warning for non conformant letter case in scientific names
Rule:
First letter in a mononomial starts with a capital letter
Exceptions: none
First letter of an epithet sta...
Wolf-Henning Kusber
10:23 AM bug #9386: orthographic variants should not be symmetrical
So I think we can summerize that we agree that according to the code orthographic variants are a cluster of "names" w... Andreas Müller

02/01/2021

10:46 PM feature request #9272 (Closed): Add missing nomenclatural status
The above terms were added. A new framework for handling the status/nomenclatural standing was added in #9282. Some i... Andreas Müller
10:22 PM feature request #5794 (Closed): Move other invalid names to the end
Open issues moved to new tickets. Andreas Müller
10:20 PM feature request #5794: Move other invalid names to the end
missing handling of invalid designation name relationships moved to #9441 Andreas Müller
10:13 PM feature request #5794: Move other invalid names to the end
missing invalid designation sign (dash) in data portal moved to #9440 Andreas Müller
08:05 PM feature request #5794: Move other invalid names to the end
AM:
derzeit versuchen wir (also v.a. Walter und ich) die nomenklatorischen Status und v.a. die Namen, die lediglic...
Andreas Müller
10:19 PM bug #9441 (Closed): Move names with invalid designation name relationships to the end in taxon comparator
copied from #5794 and #9272
Names with relationship
* is later isonym of
* is later citation of
are not ye...
Andreas Müller
09:42 PM bug #9440 (New): Invalid designation sign missing for some invalid designations in data portal
The following status are missing the invalid designation symbol (dash)
* op. utique oppr.
* pro syn.
* nom. rej....
Andreas Müller
05:43 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
Andreas Müller wrote:
> This to me seems to be fixed. Katja can you check, and if true add commit and correct target...
Andreas Müller
04:06 PM feature request #7345 (Closed): [E+M] Common name references selectable in TaxEditor
I think this works and can be closed. Andreas Müller
04:05 PM feature request #7440 (Closed): E+M mark common name reference with according marker
I checked the final import result and it looks ok.
~~~
SELECT r.id, r.uuid, r.titleCache, m.flag, mt.titleCache,...
Andreas Müller
03:44 PM bug #7849 (Closed): Improve DB Preferences handling and saving in TaxEditor
Andreas Müller
03:43 PM feature request #7902 (Closed): Allow default values for PreferencePredicates
As open issues are handled in separate tickets now, we can close this one. Andreas Müller
03:42 PM feature request #7902: Allow default values for PreferencePredicates
Andreas Müller wrote:
> For boolean and/or UUIDs /UUID Lists and maybe others we may think about separate enums to e...
Andreas Müller
03:42 PM feature request #7902: Allow default values for PreferencePredicates
Andreas Müller wrote:
> Generally implemented but for existing predicates we still need to define default values.
...
Andreas Müller
03:37 PM feature request #9439 (New): Split PreferencePredicates depending on their type
copied from #7902
"For boolean and/or UUIDs /UUID Lists and maybe others we may think about separate enums to expl...
Andreas Müller
03:09 PM feature request #6016: ICN rules in cdm validation framework implemented
To me it is very unclear if we will ever work on this ticket. So for there is only one rule in a sub-issue of yet in ... Andreas Kohlbecker
02:45 PM feature request #6016: ICN rules in cdm validation framework implemented
Can you add some more information on what is required here?
And also we should set assignee, category and target ver...
Andreas Müller
02:37 PM feature request #6238 (Closed): add name of sec reference to display of concept relations in portal and a little header
I think we can close this ticket. If there is still an open issue, please reopen a new ticket. Andreas Müller
02:35 PM feature request #6043: Name export for JACQ
Is this still required? If yes, can we add a milestone? Can we close otherwise? Andreas Müller
10:53 AM bug #9290 (Resolved): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
this ticket is fully solved now, please review Andreas Kohlbecker
10:51 AM feature request #9324 (Resolved): Enable designation reference editing in name type designation
allowing null selection for type status in name type designation editor implemented.
so this ticket can be reviewed
Andreas Kohlbecker
10:39 AM feature request #9324: Enable designation reference editing in name type designation
**7: no idea if we need the editon of references here (I would say: no).**
editing of references is enabled be def...
Andreas Kohlbecker
10:34 AM feature request #9301 (Resolved): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
can be reviewed Andreas Kohlbecker
10:33 AM feature request #9325 (Duplicate): Enable section in specimen type designation
closing as duplicate of #9301 Andreas Kohlbecker
09:52 AM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
I seem to remember that I created this ticket in turn to an email conversation that the both of us had.
However, I d...
Andreas Kohlbecker
09:36 AM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
AK, do you still remember the context for this ticket. What did not work, what did you test, which DB was involved? Andreas Müller
09:22 AM bug #9390 (In Progress): Remaining issues for set secundum dialog
the space between the checkbox area and the text is reduced, the line break in the description part I was not able to... Katja Luther
08:05 AM bug #9438 (New): User without rights on publish flag can update publish flag of synonyms and subtree operations
In the details view of a taxon the publish flag is disabled for users with unsufficent rights but in the details view... Katja Luther
07:18 AM feature request #9437 (New): Show user friendly text for permission denied exception
If a user has not sufficient rights a permission denied exception is thrwon, this needs to be catched and a user frie... Katja Luther
07:13 AM bug #6273 (Duplicate): Drag&Drop a classification on the rights editing form throws NPE
Katja Luther
07:10 AM feature request #9436 (New): Save dialog should have three options
The Dialog inidcating saving is necessary should have three options:
1. Continue with saving
2. Continue without ...
Katja Luther
07:02 AM bug #9435 (New): Error when deleting without saving
mail WGB:
Hallo,
beim Löschen ist u.a. Fehler aufgetreten (ich hatte nicht vorher gespeichert, das funktionierte ...
Katja Luther

01/30/2021

12:15 AM feature request #9434 (Resolved): Add pollen, leaf and trichomes to tissue sample kind-of-unit vocabulary
Applied in changeset commit:cdmlib|6acdd1e48e6eb255265fb139ba69310ef33f9f0c. Andreas Müller
12:03 AM feature request #9434 (Closed): Add pollen, leaf and trichomes to tissue sample kind-of-unit vocabulary
NK:
Erweiterung des Vokabulars über Kind-of-Unit finde ich erstmal eine gute Idee: ja, pollen, leaf, trichomes fal...
Andreas Müller

01/29/2021

01:08 PM feature request #9433 (Closed): Improve titleCache generation for misapplications
AM: "Eine andere Alternative, die evtl. auch Sinn macht, wäre, den titleCache in Abhängigkeit davon zu berechnen, ob ... Andreas Müller
01:05 PM feature request #9432 (New): Add context menu "Add additional source" to misapplied names in TaxEditor
This will be a shortcut for creating a new misapplication using the same name as for the given misapplication.
Not...
Andreas Müller
12:43 PM bug #9351: Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
the following lines in `server-scripts/jenkins-ci/taxeditor/repo-update-git.sh` need to be adapted, so that the "Mani... Andreas Kohlbecker
12:22 PM bug #9351: Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
Änderung ist: cdmlib-remote und cdmlib-print waren bislang dependencies von taxeditor.cdmlib. Jetzt sind es nur noch ... Andreas Müller
11:47 AM bug #9351 (In Progress): Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
Please refer to my commits above. This changing of the version in eu.etaxonomy.taxeditor.printpublisher/META-INF/MANI... Andreas Müller
11:43 AM bug #9351 (Feedback): Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
This ticket is unclear to me what is meant with "jenkins release script"?
I checked `server-scripts/jenkins-ci/tax...
Andreas Kohlbecker
11:22 AM bug #8751 (Duplicate): Replace saveOrUpdate() in AbstractTermTreeEditor
For me this is a duplicate for #8774. The main reason for switching to dtos was that save did not really work. So thi... Andreas Müller
11:21 AM task #9389 (Closed): further improvement and revision of derivative filtering by type and DerivedUnitDTO
Andreas Kohlbecker
11:10 AM bug #9395 (Closed): DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
Andreas Kohlbecker
11:09 AM task #9253 (Closed): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
Andreas Kohlbecker
11:07 AM task #9430 (New): revise OccurrenceServiceImpl._findRootUnitDTO(..) supports multiple origin paths
Andreas Kohlbecker
11:03 AM task #9430 (New): revise OccurrenceServiceImpl._findRootUnitDTO(..) supports multiple origin paths
copied from #9253
* allow for walking multiple origin paths (second FIXME in code)
Andreas Kohlbecker
11:07 AM task #9431 (New): OccurrenceServiceImpl._findRootUnitDTO(..)
copied from #9253
* The methods `OccurrenceServiceImpl._findRootUnitDTO` and `OccurrenceServiceImpl.findRootUnitDT...
Andreas Kohlbecker
10:02 AM feature request #3030: Jenkins php jobs: setup for code analysis, mess detection etc..
Andreas Müller wrote:
> Assigned and prioritized issues go to "Reviewed Next Major Release" according to out ticket ...
Andreas Kohlbecker
09:55 AM feature request #3030: Jenkins php jobs: setup for code analysis, mess detection etc..
Assigned and prioritized issues go to "Reviewed Next Major Release" according to out ticket strategy. Andreas Müller
09:30 AM feature request #3030: Jenkins php jobs: setup for code analysis, mess detection etc..
this has not yet been sovled, so it is still open.
Target Version? Unassigned? Since it is assigned and since it has...
Andreas Kohlbecker
09:35 AM bug #7579: Set up pipelines in Jenkins to replace the build pipelines
Due to the repeated problems during the last relases it has become more important to switch to the "[Jenkins Pipeline... Andreas Kohlbecker
08:52 AM bug #9429 (Closed): Taxon cache strategy handles sec details 2x in some cases
looks fine and works as expected. Katja Luther

01/28/2021

11:34 PM bug #9429: Taxon cache strategy handles sec details 2x in some cases
please review Andreas Müller
11:34 PM bug #9429 (Resolved): Taxon cache strategy handles sec details 2x in some cases
Applied in changeset commit:cdmlib|b240a635d7826790ba39aed8c110edd1253a4d80. Andreas Müller
11:32 PM bug #9429 (Closed): Taxon cache strategy handles sec details 2x in some cases
If the secundum reference is atomized (no protected titleCache, authorships exists, datePublished exists) the sec det... Andreas Müller
12:16 PM feature request #9428 (New): Asynchronous loading of terms
copied from #9422, see there for more details:
An even better solution (maybe for the future/another ticket) could...
Katja Luther
12:11 PM feature request #9427 (Closed): Code cleaning in CdmPreferenceCache
copied from #9422:
for CdmPreferenceCache.getAllTaxEditorDBPreferences() the code
~~~ java
PrefKey k...
Katja Luther
11:55 AM bug #9422 (Closed): Improve performance during Preferences startup
yes, the first fix (term loading at start) is fixed for 5.19. So I create a new ticket for the remaining issues and c... Katja Luther
11:51 AM bug #9422 (Feedback): Improve performance during Preferences startup
The first fix went into 5.19, correct?
So I think we should split the ticket and set this one to resolved?
Andreas Müller
11:40 AM bug #9426 (Closed): Set publish flag for Synonyms in accordance with accepted taxon publish flag
If a new synonym is added to an accepted taxon the publish flag should get the same value as the accepted taxon to av... Andreas Müller
11:26 AM bug #9425: Common Names handling in CdmLight
By the way the same should be done for distributions. Andreas Müller
11:25 AM bug #9425: Common Names handling in CdmLight
As I guess that this is a no brainer I put it to the current milestone. Andreas Müller
11:06 AM bug #9425 (New): Common Names handling in CdmLight
The feature CommonName allows descriptionElements of type TextData this is not handled in cdmLight.
We need to di...
Katja Luther
 

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