Activity
From 01/20/2021 to 02/18/2021
02/18/2021
- 03:06 PM Revision 7c11179c (taxeditor): add class information to exception -fix compilation error
- 03:03 PM Revision e6989719 (taxeditor): add class information to exception
- 12:52 PM bug #9466 (Resolved): Termselection preference pages do not check the elements
- This should be fixed, please review.
- 10:58 AM Revision 69d28708 (cdmlib): ref #8198: add possibility to delete a list of media
- 10:45 AM Revision ab7d0888 (taxeditor): ref #8198: l10n file adaptions
- 10:31 AM bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
- For the gallery the dialog explicitly say that the gallery still contains media data and ask how to handle them. Plea...
- 10:29 AM Revision 4da7c81b (taxeditor): ref #8198: show media delete config wizard only for galleries with media
02/17/2021
- 02:08 PM Revision 0c247ba9 (taxeditor): add additional debugging in AbstractPersistentCollection
- 12:42 PM Revision 628f1778 (taxeditor): cleanup
- 12:40 PM Revision 96576957 (taxeditor): remove svnignore from etc/jetty
- 12:36 PM Revision c2e26de3 (taxeditor): ref #9359 update spring version in remotingApplicationContext and testRemotingApplicationContext.xml
- 12:31 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- If this is in progress should we move it to current milestone?
- 12:31 PM bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
- For existing images we need the delete dialog that is true. I have not checked how the current dialog looks like but ...
- 12:25 PM bug #8198 (In Progress): Deleting an image gallery from image gallery view shows wrong configuration dialog
- 10:03 AM bug #8297: Fix condensed distribution string for E+M
- Diskussion mit AK über handling des CondensedDistributionString im Portal:
Derzeit werden Teile des Strings hardco... - 09:09 AM bug #8297 (In Progress): Fix condensed distribution string for E+M
- AM:
Wenn die Subareale beide z.B. indigenous sind, aber unterschiedliche Status haben, sollen die Hauptareale dann... - 09:08 AM bug #8297: Fix condensed distribution string for E+M
- AM:
Wenn es für ein Areal Unterareale gibt und diese haben einmal einen indigenous und einmal einen „foreign“ Sta...
02/16/2021
- 05:04 PM bug #9471 (Resolved): Widget is disposed exception when switching away from media before details view is completely loaded
- yes, this should be resolved. Please review.
- 04:48 PM bug #9471: Widget is disposed exception when switching away from media before details view is completely loaded
- is this resolved? (you mention it in #9374)
- 01:57 PM bug #9471 (Closed): Widget is disposed exception when switching away from media before details view is completely loaded
- When the media details view is not completely loaded and clicking on another element a "widget is disposed exception"...
- 04:49 PM Revision 32ca3eb7 (taxeditor): ref #9466: avoid NPE
- 02:28 PM bug #9374: ClassCastException when switching between media
- After fixing #9471 the problem seems to be fixed. Please have a look whether you still can reproduce the exception.
- 02:24 PM Revision 4e80230e (taxeditor): ref #6229: multilanguage support for media details view
- 02:02 PM Revision 2ab78f11 (taxeditor): ref #9471: avoid widget is disposed for media details view
- 10:17 AM task #9359 (In Progress): Update cdmlib, taxeditor, cdmserver etc. dependencies
- 08:02 AM bug #9468: specimen type of existing name cannot be saved
- this seems to be a problem which stems from incomplete solution of #9290
- 08:01 AM bug #9468 (In Progress): specimen type of existing name cannot be saved
- This sees to happen with newly created registrations only.
~~~~
07:50:46.162 [phycobank] [qtp599984672-30] ERROR ... - 07:38 AM bug #9470 (Resolved): CollectionDTO constructor prevent from circles
- Applied in changeset commit:cdmlib|85d748e1311f1b1045ea33d07ebf5f0beb55e359.
- 07:30 AM bug #9470 (Closed): CollectionDTO constructor prevent from circles
- The constructor of CollectionDTO is being called recursively, to initialize also super collections.
Prevent from end... - 07:38 AM Revision 85d748e1 (cdmlib): fix #9470 preventing circular calls of CollectionDTO constructor
02/15/2021
- 09:05 PM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
- Andreas Müller wrote:
> Have you also checked that no ROLE_PUBLISH with wrong UUID exists in existing production DBs... - 04:15 PM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
- Have you also checked that no ROLE_PUBLISH with wrong UUID exists in existing production DBs? (see ticket description)
- 05:12 PM Revision 0495b764 (taxeditor): ref #9359 remove taxeditor.local...config.properties
- 05:12 PM Revision 790c4cdf (taxeditor): ref #9359 remove taxeditor.cdmlib...localApplicationContext.xml / taxeditor.local...editorApplicationContext.xml and taxeditor.store...editorApplicationContext.xml
- 04:16 PM Revision a56689b9 (cdmlib-apps): cleanup
- 04:16 PM Revision e0f4dbe9 (cdmlib-apps): ref #7529 adapt new ROLE_PUBLISH constant name in cdmlib-app
- 03:52 PM bug #9469 (Closed): Searching for a UUID in bulkeditor which does not belong to a record throws an exception
- When searching for such a UUID a record is shown in the table but when clicking on the record the following exception...
- 03:36 PM bug #9468 (Worksforme): specimen type of existing name cannot be saved
- Test version:
existing name selected (ok)
specimen type entered including all mandatory fields (ok)
saving the rec... - 03:34 PM feature request #9296: Preference to show/not show infrageneric epithet for species
- WGB:
ist schon merkwürdig – ich bin mir eigentlich sicher, dass es das früher (bei botanischen Namen) nicht gab. E... - 02:22 PM Revision 4725da43 (cdm-vaadin): jenkins bumping cdmlib.version to 5.21.0-SNAPSHOT
- 02:22 PM Revision 10df87e2 (cdm-vaadin): jenkins bumping cdmlib.version to 5.22.0-SNAPSHOT
- 01:24 PM Revision ea7ae629 (taxeditor): cleanup editor code: remove DeleteHandlerE4 and keep RemotingDeletehandlerE4
- 09:05 AM Revision 0ac54bf4 (taxeditor): minor
02/12/2021
- 03:52 PM Revision 476ffd3e (taxeditor): ref #5670: when updating a taxon update only the corresponding node in navigator
- 03:51 PM bug #5670: Refresh of Taxon Navigator
- Refresh only the handled taxonnode for changes in taxa or names.
- 11:46 AM bug #8970 (Worksforme): Moving a taxon to another position often closes the parent nodes
- This seems to be fixed in the meanwhile, I can not reproduce it anymore.
- 11:38 AM bug #9467 (Resolved): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- This should be fixed, please review.
- 09:19 AM bug #9467 (Closed): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
- The label provider for DefaultFeatureTreePreferences implements IBaseLabelProvider but should ILabelProvider.
~~~ ... - 11:29 AM Revision 731536ea (taxeditor): fix #9465: correct handling for open in taxa from search view
- 11:28 AM bug #9465: Open in ... NameEditor for orphan taxa results in CCE
- This should be fixed. Please review.
- 11:27 AM bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE
- Applied in changeset commit:taxeditor|731536ea445abf9f0ef923b21913ef545c6305d4.
- 09:51 AM Revision 1acdebbf (cdmlib): new preference predicate for default sec handling
- 09:40 AM Revision 15647253 (cdmlib): add test for uuidAndTitleCache in TaxonNodedao and code cleau
- 09:32 AM Revision ac14d421 (cdm-dataportal): ref #9463 attempt to isolate jquery versions - not yet successful
- 09:31 AM Revision 793d6004 (cdm-dataportal): updating poms for 5.21.0-SNAPSHOT development
- 09:29 AM Revision d3ba2bcd (cdm-dataportal): ref #9463 improving documentation
- 09:29 AM Revision cc5d96f8 (cdm-dataportal): ref #9463 upgrading universalviewer to v3.1.1
- 09:29 AM bug #9463: UniversalViewer causes jQuery version conflict and breaks maps
- work in progress in branch #9463-universalviewer-jquery-conflict
- 09:28 AM Revision 4a2263a6 (taxeditor): ref #9467: TermTreeLabelProvider should implement ILabelProvider
- 09:13 AM Revision 5f7c9e3b (taxeditor): ref #9466: fix checking selected elements in term preference page
- 09:09 AM Revision b4b868f8 (cdm-dataportal): ref #9463 attempt to isolate jquery versions - not yet successful
- 09:06 AM Revision 1f23ce61 (cdm-dataportal): ref #9463 improving documentation
- 09:04 AM Revision b0b51399 (cdm-dataportal): ref #9463 upgrading universalviewer to v3.1.1
- 09:02 AM bug #9466 (Closed): Termselection preference pages do not check the elements
- The preference pages for term selection do not show the selected terms when opening. Saving of a new selection works ...
02/10/2021
- 10:51 PM Revision 6eee71ca (cdm-vaadin): cleanup
- 04:58 PM bug #9465 (Closed): Open in ... NameEditor for orphan taxa results in CCE
- For orphan taxa "open in... " presents the possibility NameEditor but this results in a ClassCastException:
~~~ te... - 11:57 AM bug #9461: Filter in vaadin distribution editor does not work
- Andreas Müller wrote:
> The last commit seems to fix this issue. Can you please review.
Code changes look good. A... - 10:21 AM bug #6383 (In Progress): fatal error on git push: The remote end hung up unexpectedly
- bothered and thus "motivated" by the severe problems during the last two releases I returned to this issue.
For th... - 10:07 AM Revision c3aec859 (taxeditor): removing .classpath file from merge strategy configuration - file is no longer in git
- 10:04 AM Revision 266a4ad3 (taxeditor): configuring eu.etaxonomy.taxeditor.printpublisher/build.properties with merge=ours
- 09:58 AM feature request #9464 (Duplicate): Show all team members in agent selection dialog
- This is very much related to #9326. Generelly we should store all authors in titleCache, not only the first3 or 4. On...
- 09:05 AM feature request #9464 (Duplicate): Show all team members in agent selection dialog
- TitleCache of teams does not contain all team members therefore it is difficult to differ teams with same first team ...
- 09:58 AM feature request #9326: Show all authors in bibliographic references
- Generally all authors should be stored in Agent.titleCache as mentioned in #9464. So we need to implement it there fi...
- 09:56 AM Revision e7ac6a0e (taxeditor): fixing wrongly merged version numbers (AK)
- 09:50 AM Revision 12749d66 (taxeditor): Merge branch 'release/5.20.0' into develop
- Conflicts:
eu.etaxonomy.taxeditor.printpublisher/build.properties - 09:40 AM Revision 13277946 (cdm-server): Merge branch 'release/5.20.0' into develop
- 09:39 AM Revision 2b90c630 (cdm-server): updating poms for branch'release/5.20.0' with non-snapshot versions
- 09:38 AM Revision 8431c272 (cdm-webapp): Merge branch 'release/5.20.0' into develop
- 09:38 AM Revision 6ab62982 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 09:38 AM Revision f1fdc36e (cdm-webapp): updating poms for branch'release/5.20.0' with non-snapshot versions
- 09:38 AM Revision 9970e989 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.20.0
- 09:38 AM Revision 91002240 (cdm-vaadin): Merge branch 'release/5.20.0' into develop
- 09:38 AM Revision f3bbf62c (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 09:36 AM Revision 02724e26 (taxeditor): Merge branch 'release/5.20.0'
- 09:34 AM Revision eacbd577 (cdm-dataportal): updating poms for branch'release/5.20.0' with non-snapshot versions
- 09:34 AM Revision 090aecb0 (cdm-vaadin): updating poms for branch'release/5.20.0' with non-snapshot versions
- 09:34 AM Revision a85f6615 (cdm-dataportal): release-preparation: production level css
- 09:34 AM Revision f7a2f252 (cdm-vaadin): jenkins bumping cdmlib.version to 5.20.0
- 09:34 AM Revision f1f7cac5 (cdmlib): Updating develop poms back to pre merge state
- 09:34 AM Revision c717d03a (cdmlib): Merge branch 'master' into develop
- 09:34 AM Revision a6cd7091 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 09:33 AM Revision 1afea7af (cdmlib): Merge branch 'release/5.20.0'
- 09:18 AM Revision 61eb8f33 (cdmlib): updating poms for branch'release/5.20.0' with non-snapshot versions
- 09:14 AM Revision 5d6e7996 (taxeditor): Updated version in pom / project files to taxeditor version : 5.21.0-SNAPSHOT and cdmlib version : 5.21.0-SNAPSHOT
- 09:14 AM Revision 3ff4bb64 (taxeditor): Updated version in pom / project files to taxeditor version : 5.20.0 and cdmlib version : 5.20.0
- 08:58 AM Revision d5cbb74e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.20.0-SNAPSHOT
- 08:58 AM Revision ce822a40 (cdm-webapp): updating poms for 5.21.0-SNAPSHOT development
- 08:58 AM Revision b31071bc (cdm-webapp): updating poms for 5.20.0 branch with snapshot versions
- 08:58 AM Revision 3d3ae548 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.21.0-SNAPSHOT
- 08:56 AM Revision 2345a6b8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.20.0-SNAPSHOT
- 08:56 AM Revision 3f36a33a (cdm-vaadin): updating poms for 5.21.0-SNAPSHOT development
- 08:56 AM Revision bcb95b6c (cdm-vaadin): updating poms for 5.20.0 branch with snapshot versions
- 08:56 AM Revision a2533843 (cdm-vaadin): jenkins bumping cdmlib.version to 5.21.0-SNAPSHOT
02/09/2021
- 04:18 PM bug #9461 (Resolved): Filter in vaadin distribution editor does not work
- The last commit seems to fix this issue. Can you please review.
- 10:53 AM bug #9461 (Resolved): Filter in vaadin distribution editor does not work
- Previously the filter in the distribution editor did throw an exception (see #7254 and #9457). This is not the case a...
- 04:16 PM bug #9457 (Closed): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- I created a new ticket for the non-working filter: #9461 . So I think we can close this ticket.
- 03:43 PM Revision 8716ab07 (cdm-vaadin): updating poms for 5.21.0-SNAPSHOT development
- 03:43 PM Revision 8bdb22c3 (cdm-vaadin): updating poms for 5.20.0 branch with snapshot versions
- 03:42 PM Revision 5d7f85d9 (cdm-vaadin): jenkins bumping cdmlib.version to 5.21.0-SNAPSHOT
- 03:42 PM Revision 2a7584b5 (cdm-dataportal): updating poms for 5.21.0-SNAPSHOT development
- 03:42 PM Revision 22c02b72 (cdm-server): updating poms for 5.21.0-SNAPSHOT development
- 03:39 PM Revision 1e333422 (cdmlib): updating poms for 5.21.0-SNAPSHOT development
- 02:12 PM Revision 4672fa5f (cdm-vaadin): ref #9461 try to fix not working filter by using dto not dtos
- 02:12 PM Revision 4ad518e4 (cdm-vaadin): cleanup
- 01:43 PM bug #9463 (In Progress): UniversalViewer causes jQuery version conflict and breaks maps
- 11:46 AM bug #9463 (In Progress): UniversalViewer causes jQuery version conflict and breaks maps
- When taxon pages are configured tab-less the image-viwer (Universalviewer - UV) is shown together with maps on the sa...
- 12:01 PM Revision 5027d200 (cdmlib): Revert "ref #7529 adding PUBLISH group to FirstDataInserter - handing case when group with same name exists"
- This reverts commit 5b133131725616c83c01e16e8bb5acca008ed33e.
- 12:01 PM Revision e74a407f (cdmlib): Revert "ref #7529 adding PUBLISH group to FirstDataInserter - handing case when group with same name exists"
- This reverts commit c5893c96fc9ee990944ec5f5f75bf0ba29bce428.
- 11:36 AM bug #9462 (New): polytomous key generated from structured descriptions supported
- Example:
https://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/polytomousKey/f36b96a1-92... - 11:19 AM bug #7254 (Worksforme): Filter in vaadin distribution editor throws exception
- An exception is not thrown anymore. However, the filter still does not work, therefore a new ticket was opened: #9461.
- 11:07 AM Revision e6d5c3e2 (cdmlib): ref #9457 , ref #9461 fix incorrect handling of AND/OR logic in doubtfulPattern handling in TaxonNodeDaoHibernateImpl.getUuidAndTitleCache
- 11:00 AM Revision c5893c96 (cdmlib): ref #7529 adding PUBLISH group to FirstDataInserter - handing case when group with same name exists
- 10:55 AM bug #9143: Distribution data sources are missing if multiple distributions exist
- ERS: Hi, this looks good now on the test portal for the mentioned areas.
- 10:02 AM bug #9143 (Closed): Distribution data sources are missing if multiple distributions exist
- I tested on test https://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/taxon/229a548c-fec8-4f15-9058-8...
- 10:37 AM Revision 5b133131 (cdmlib): ref #7529 adding PUBLISH group to FirstDataInserter - handing case when group with same name exists
- 09:57 AM bug #7529 (Closed): Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
- verified at some test databases: works as expected.
- 09:39 AM bug #6324 (Closed): fix dozer mapping after removal of synonym relations and after using TaxonNode
- 09:29 AM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
- Andreas Müller wrote:
> No there is no custom converter in use yet for field taxonNodes. But ofcourse we use it else... - 08:36 AM task #9460 (New): REST API tests
- see #9459 for general considerations which also apply to this task, at least to a significant extend.
- 08:17 AM task #9459 (New): REST API tests for UTIS
- There is already a test suite http://int.e-taxonomy.eu/jenkins/job/utis-jmeter-tests/ which could be repaired.
Oth... - 12:50 AM Revision 7ceaa4ea (cdmlib): cleanup
- 12:48 AM Revision 99cb169f (cdmlib): unignore FloraCubaCondensedDistributionComposerTest
02/08/2021
- 11:14 PM Revision 9697d9fc (cdmlib): add missing cultivated presence questionable term to test terms (to fix failing CubaCondensedDistributionTest)
- 10:48 PM Revision f6e4b1b3 (cdmlib): fix duplicated uuid and remove all created information from test terms
- 10:18 PM Revision 53b5dc9b (cdmlib): add missing reported in error term to test terms (to fix failing CubaCondensedDistributionTest
- 09:13 PM Revision 262288e1 (cdmlib): revert removing UTF-8 from EuroPlusMedCondensedDistributionComposer
- 07:07 PM bug #9443 (Closed): Improve handling of TissueSamples and others in SpecimenTreeEditor
- looks fine and works as expected.
- 10:57 AM bug #9443: Improve handling of TissueSamples and others in SpecimenTreeEditor
- Katja, can you check the commits of this ticket again if they look ok? Generally this ticket was reverted, however th...
- 10:55 AM bug #9443: Improve handling of TissueSamples and others in SpecimenTreeEditor
- The commit message of the last commit "handling tissue samples as DerivedUnit" was incorrect. Should be "**revert** h...
- 07:01 PM bug #5670 (In Progress): Refresh of Taxon Navigator
- First issues:
- add a parameter whether the navigator should be updated or not.
- do not refresh the navigator ... - 05:04 PM Revision a76f9136 (cdmlib): simplify grouping in EuroPlusMedCondensedDistributionComposer
- 05:03 PM Revision 20e0055b (cdmlib): cleanup
- 04:54 PM Revision 6b579e4a (cdmlib): ref #7287 unignore tests on CondensedDistributionComposerBase subclasses
- 04:54 PM Revision 2dae2fcc (cdmlib): cleanup
- 04:49 PM bug #7287: Unit tests using the DefaultTermInitializer break subsequent integration tests in the suite
- Andreas Kohlbecker wrote:
> After using the new unit test base class TermTest for all test which need the terms to b... - 04:27 PM bug #9457 (Feedback): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- I aimed in testing the fix in the vaadin distribution editor itself ... the exception no longer occurs but no taxon r...
- 11:15 AM bug #9457: Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- By the way, please do not use the "cdmlib - Next Major Release" anymore. It is deprecated and will be closed soon, af...
- 11:13 AM bug #9457: Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- Can you please review. I only fixed in theory, did not test.
- 10:47 AM bug #9457 (Resolved): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- Applied in changeset commit:cdmlib|e0e956a86c917a9f70f0acbbd03eaebc2a7535cc.
- 10:29 AM bug #9457 (Closed): Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache()
- to reproduce:
* http://api.cybertaxonomy.org/flora-cuba/app/distribution
* Enter any string into the Taxon filter... - 03:22 PM bug #7529 (Resolved): Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
- Applied in changeset commit:cdmlib|b8dd2aa39122e68351a1591e11a4dc12751fdc2e.
- 03:21 PM Revision b8dd2aa3 (cdmlib): fix #7529 adding PUBLISH group to FirstDataInserter
- 02:59 PM bug #9351 (Closed): Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
- fixed in server-scripts:
~~~
svn ci -m "ref #9351 support for setting version in multiple projects & fixing some... - 12:04 PM task #9448 (In Progress): Remove all not e4 classes and rename "Remoting..." classes
- KL:
soweit ich es sehe, betraf das vor allem das io package, ich habe das aufgeräumt. An anderer Stelle habe ich n... - 11:48 AM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
- No there is no custom converter in use yet for field taxonNodes. But ofcourse we use it elsewhere e.g. here
~~~
... - 10:14 AM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
- I could not inspect all code changes in depth as this would require more time to dive into the whole topic of relatio...
- 11:15 AM bug #6450 (Resolved): New reference with only the protected titleCache set is not found in reference select dialog
- The problem was that if no abbrevTitle exists the titleCache was used, now the abbrevTitleCache.
- 11:15 AM Revision 9c32f328 (taxeditor): ref #6450: show abbrev titlecache in nomenclatural ref selection dialog for new reference
- 11:11 AM Revision 6ca6c48f (cdmlib): cleanup
- 11:11 AM Revision 1606ebde (cdmlib): ref #9457 fix missing space in HQL (cont.)
- 10:47 AM Revision e0e956a8 (cdmlib): fix #9457 fix missing space in HQL
- 10:45 AM task #9458 (Closed): Consider lower zoom level as default
- currently the default zoom level for maps is `15`
This causes two problems with occurrence maps
* some maps onl... - 09:02 AM bug #9456: Sources of Descriptive Datasets visible
- This is more or less a duplicate for #7716. We should think about closing it as a duplicate. This is not true if we r...
- 08:54 AM bug #9456 (New): Sources of Descriptive Datasets visible
- Sources of Descriptive Datasets are not yet shown in the Dataportal.
"Derzeit werden alle Datasets gemerged und di...
02/06/2021
- 10:10 PM feature request #9427: Code cleaning in CdmPreferenceCache
- I did some further reduncancy removal. Please check the code and test once if loading still works as expected. Then w...
- 10:09 PM Revision 543d3926 (taxeditor): ref #9427 further remove redundant code by parameterized method call
- 10:07 PM Revision 3395c0c6 (taxeditor): cleanup
- 09:54 PM bug #9143 (Resolved): Distribution data sources are missing if multiple distributions exist
- 09:33 PM Revision 4681378d (cdmlib): rename method
- 09:32 PM Revision 8b352348 (cdmlib): fix compilation issue in SetMap
- 09:11 PM Revision 6c6272d1 (cdmlib): cleanup
- 09:03 PM Revision a8de3c3c (cdmlib): ref #9143 rename variable name for preferComputed->preferAggregated and update javadocs
- 08:45 PM Revision f20e21fb (cdmlib): ref #9143 remove preferComputed rule as default from calling DefilterDistributions.filterDistributions(...) methods
- 08:38 PM Revision 990da774 (cdmlib): use SetMap in DescriptionUtility
- 06:44 PM feature request #5575 (Resolved): DNA Sample requires CacheStrategy
02/05/2021
- 06:47 PM feature request #9434 (Closed): Add pollen, leaf and trichomes to tissue sample kind-of-unit vocabulary
- New terms are available on test server instances. So it sees to work and I close the ticket.
- 06:45 PM bug #9426 (Closed): Set publish flag for Synonyms in accordance with accepted taxon publish flag
- Works as expected
- 06:39 PM bug #5095 (Closed): Fix failing dozer related tests
- I fixed the variable name.
http://memory.loc.gov testing is not part of this ticket therefore I close this ticket.... - 10:35 AM bug #5095: Fix failing dozer related tests
- code changes look good, test are all successful so the ticket is solved and can be closed.
I am a bit concerned th... - 06:36 PM Revision ded02d5b (cdmlib): ref #5095 fixing variable name for oahServerURI
- 06:04 PM feature request #5575: DNA Sample requires CacheStrategy
- As TissueSample are currently still handled as DnaSample modellwise (to allow adding of sequences directly without Dn...
- 06:02 PM task #9455 (New): Merge DnaSample and DerivedUnit
- In general we do not want to have too many classes to avoid transformation problems and for other reasons (see TaxonN...
- 05:56 PM bug #9443: Improve handling of TissueSamples and others in SpecimenTreeEditor
- Still need to check if AddXXX handlers now work as expected and as before.
- 05:55 PM bug #9443 (Resolved): Improve handling of TissueSamples and others in SpecimenTreeEditor
- Saving as DerivedUnit needs to be reverted as we want to allow also TissueSample to have DNA Sequences attached direc...
- 05:51 PM Revision 4fc7f502 (taxeditor): ref #9443 handling tissue samples as DerivedUnit
- 05:50 PM task #9451 (Resolved): Cache strategy for classifications is missing
- Please review
- 05:49 PM task #9451 (New): Cache strategy for classifications is missing
- 05:24 PM task #9454 (New): [DISCUSS] Decide on using dozer or similar frameworks for mapping DTOs
- Dozer or similar frameworks (https://stackoverflow.com/questions/1432764/any-tool-for-java-object-to-object-mapping) ...
- 05:13 PM Revision e141acff (cdmlib): fix #6324 fix taxon node dozer mapping for TDWG Ontology (cont.) - add missing mappings-deep.xml changes
- 04:57 PM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
- The mapping was not only corrupt for synonyms but also for TaxonNodes as they were not mapped as taxon relations yet....
- 01:26 PM bug #6324 (Resolved): fix dozer mapping after removal of synonym relations and after using TaxonNode
- Applied in changeset commit:cdmlib|f278f0365262de31e73b9f4bf7e442e60e3a60db.
- 04:54 PM Revision 0f6bc0c7 (cdmlib): fix #6324 fix taxon node dozer mapping for TDWG Ontology
- 02:03 PM Revision 3a519edd (taxeditor): fix compile error
- 01:26 PM Revision f278f036 (cdmlib): fix #6324 fix synonym dozer mapping for TDWG Ontology
- 01:22 PM Revision 8ed8ec11 (cdmlib): ref #6324 add toString() methods to TDWG classes for debugging
- 01:21 PM Revision bed99e76 (cdmlib): cleanup
- 11:36 AM feature request #8975 (Closed): Name Status filtered in UI
- 11:31 AM feature request #8975: Name Status filtered in UI
- Yes
- 11:20 AM feature request #8975 (Feedback): Name Status filtered in UI
- Order changed to
~~~
NomenclaturalStatusType.CONSERVED(),
NomenclaturalStatusType.CON... - 11:19 AM Revision 0e53752c (cdm-vaadin): ref #8975 changing order of name status
- 11:11 AM bug #9452: Name Type Editor: allowed combination of fields
- put in version:"Phycobank ready for submitters" when not solved in version:"Release 5.20"
- 11:06 AM bug #9452: Name Type Editor: allowed combination of fields
- solution:
1. radiobuttons for "rejected", "conserved", "Not typified"
2. hide TypeName field when "Not typified" ... - 11:00 AM feature request #9324 (Closed): Enable designation reference editing in name type designation
- > Note 3: proposed types for rejection/conservation with references are missing.
we (Henning & Andreas) decided t... - 10:45 AM feature request #9324: Enable designation reference editing in name type designation
- example for Note 3: proposed types for rejection/conservation with references are missing.
species
Achnanthes... - 10:14 AM feature request #9324 (Feedback): Enable designation reference editing in name type designation
- Wolf-Henning Kusber wrote:
> Allowing null selection for type status in name type designation editor implemented.
>... - 10:00 AM bug #9453 (New): Implement NameDesignationBase.hasDesignationSource() which takes isRejected and isConserved into account
- `TypeDesignationBase.hasDesignationSource()`currently directly delegates to TypeDesignationStatusBase.hasDesignationS...
- 09:47 AM Revision 752dcdec (cdmlib): ref #6714 remove commented hibernate3-maven-plugin from pom
- 08:54 AM bug #8522 (Closed): Make type status mandatory in Name type designation editor
- 08:52 AM feature request #8981 (Feedback): Improve NameStatus in UI
- I see that there are remaining requests like "Reference is restricted to a given list of Codes
Code edition was adde... - 08:45 AM bug #8140 (Feedback): Update list of type designation status which allow an explicit source
- in #9301 Henning
pointed out that: "paralectotype (enabled)-> reference should be disabled like the other paraty... - 08:43 AM feature request #9301 (Closed): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- Wolf-Henning Kusber wrote:
> Works as expected.
>
>
> paralectotype (enabled)-> reference should be disabled li... - 08:13 AM bug #9290 (Closed): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
02/04/2021
- 11:56 PM Revision 432b5684 (taxeditor): cleanup
- 11:55 PM Revision 88ff4560 (taxeditor): ref #9359 remove objenesis from TaxEditor
- 11:23 PM Revision af8e4aa7 (cdmlib): ref #9359 remove test scope from objenesis
- 11:05 PM Revision 658ad631 (taxeditor): ref #9359 try to fix compile error in TaxEditor due to missing objenesis class (cont.) - move objenesis from printpublisher to cdmlib
- 10:46 PM Revision 9e42bfa8 (taxeditor): ref #9359 try to fix compile error in TaxEditor due to missing objenesis class
- 10:18 PM feature request #4716 (Closed): Other dependencies to be updated
- 08:51 PM Revision 5db155c8 (cdmlib): ref #9359, ref #5095 upgrade dozer form 5.5.1 to 6.5.0 and use dozer-spring
- 08:46 PM Revision 5b2db12a (cdmlib): cleanup
- 07:36 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- Reference is now selectable in relevant cases, but not anymore a default.
- 07:32 PM feature request #9301: SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
Works as expected.
paralectotype (enabled)-> reference should be disabled like the other paratypes (see above)- 07:15 PM feature request #8981: Improve NameStatus in UI
- The functionality shown in the second screen is implemented and works.
- 07:05 PM feature request #8975: Name Status filtered in UI
- The filtering is fine.
I could live with this order of the filtered terms.
But I would like also:
First the b... - 06:53 PM bug #9452 (Closed): Name Type Editor: allowed combination of fields
- The Name type editor needs some fine tuning:
"not typified" (only) must not combined with a scientific name for lo... - 06:46 PM bug #8522: Make type status mandatory in Name type designation editor
- works as expected, ticket can be closed
- 06:38 PM Revision 45e5e41d (cdmlib): ref #3403 , ref #4716, ref #3332, ref #9359 update dozer to version 5.5.1
- 06:32 PM feature request #9324: Enable designation reference editing in name type designation
- Allowing null selection for type status in name type designation editor implemented.
Is functioning as expected.
... - 06:32 PM bug #5095: Fix failing dozer related tests
- please review
- 06:30 PM bug #5095 (Resolved): Fix failing dozer related tests
- Applied in changeset commit:cdmlib|523a6c95979f449c49f9723f7d080d3cf6013cf8.
- 06:29 PM Revision 3355e574 (cdmlib): cleanup
- 06:29 PM Revision 523a6c95 (cdmlib): fix #5095 unignore tests (remaining 2 tests in AssemblerTest are caused by changes in #6324)
- 06:26 PM Revision 0b5641a3 (cdmlib): ref #5095 avoid running dozer tests when dozer.sourceforge.net is not available
- 06:22 PM Revision ffc8547f (cdmlib): fixing incorrect test
- 06:21 PM Revision da9e578e (cdmlib): cleanup
- 05:56 PM Revision ad89c499 (cdmlib): ref #5095 change dozer mapping from .dtd to .xsd
- 05:30 PM Revision a2bbcf8a (cdmlib): cleanup
- 05:28 PM Revision 9e63c4cf (taxeditor): ref #9448: cleanup io package - continue
- 05:16 PM Revision b172c7ce (taxeditor): translate specimen correctly
- 05:08 PM Revision 87baedee (taxeditor): ref #9448: cleanup io package
- 04:53 PM Revision ac58825c (cdmlib): ref #9114 fix dozer mapping by reverting URI mappings to java.net.URI
- 04:51 PM Revision fc70bf22 (cdmlib): cleanup
- 04:24 PM Revision ca097629 (taxeditor): do not refresh navigator if it is not needed - continue
- 02:59 PM bug #9247 (Duplicate): Link with taxon does not work correctly
- this is an exact duplicate of #9264 (even the same description text)
- 02:22 PM bug #9247 (Worksforme): Link with taxon does not work correctly
- This works now. Also if synonyms are selected.
- 01:43 PM bug #8767 (Feedback): Workflow support for publish flag
- Katja Luther wrote:
> I also adapted the changeSynonymToAcceptedTaxon, the newly created taxon has the same publish ... - 09:10 AM bug #8767 (Resolved): Workflow support for publish flag
- 08:47 AM bug #8767: Workflow support for publish flag
- This is fixed, also for pp synonyms.
I also adapted the changeSynonymToAcceptedTaxon, the newly created taxon has ... - 12:31 PM bug #8824 (Worksforme): No dirty flag when adding new factual data set
- Seems to be fixed in the meanwhile.
- 11:58 AM Revision 1eeaa942 (taxeditor): do not refresh navigator if it is not needed - continue
- 11:29 AM Revision 12cdcf1f (taxeditor): do not refresh navigator if it is not needed
- 11:09 AM Revision 66c95313 (taxeditor): do not refresh navigator when node wizard was canceled
- 10:54 AM Revision a5c094d3 (taxeditor): fix #9427: code cleaning
- 10:54 AM feature request #9427: Code cleaning in CdmPreferenceCache
- Please have a look.
- 10:53 AM feature request #9427 (Resolved): Code cleaning in CdmPreferenceCache
- Applied in changeset commit:taxeditor|a5c094d3aeed06649e96b33d5779d86c3e92b5a3.
- 10:47 AM Revision 61cc290b (taxeditor): save should not open navigator subtree if linkWithTaxon is disabled
- 10:12 AM Revision 1f7f3f09 (cdmlib): missed to add the new enum
- 09:58 AM Revision 8b233e12 (cdmlib): revert setting publish in clone
- 09:39 AM Revision 0f6a011b (cdmlib): add tests for different sec handling
- 09:31 AM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor
- I moved it to 5.11
- 08:55 AM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor
- this ticket should still be in Release 5.11 but this MS has been closed, so it will be without until closed
Review i... - 09:10 AM Revision db73ee9a (cdmlib): publish also should be cloned in TaxonBase.clone
- 09:03 AM bug #9426 (Resolved): Set publish flag for Synonyms in accordance with accepted taxon publish flag
- please review
- 08:32 AM Revision 2005ad49 (taxeditor): adapt changeSynonymToAcceptedTaxonOperation to new method parameters
- 08:28 AM Revision 037a20f8 (cdmlib): fix publish handling for synonyms and misapplied names and add sec handling for switch syn to accepted
02/03/2021
- 04:48 PM feature request #8611: [DISCUSS] how to handle editor teams
- This is a model issue therefore I did change category and target version.
- 03:44 PM bug #9386: orthographic variants should not be symmetrical
- AM:
nein, nur die bisherige Beziehung umdeuten ist natürlich nicht geplant.
Eher sollte es so aussehen:
• Es... - 03:39 PM bug #9386: orthographic variants should not be symmetrical
- WGB:
ich bin nur nicht damit einverstanden, dass man das existierende Label einfach asymmetrisch macht. Das klang ... - 01:13 PM task #9451 (Resolved): Cache strategy for classifications is missing
- Applied in changeset commit:cdmlib|1d67f2ce2878bb557d58827fa3d7f4047715c54c.
- 01:12 PM task #9451 (Closed): Cache strategy for classifications is missing
- Currently generateTitle() is implemented within the Classification class itself.
- 01:13 PM Revision 1d67f2ce (cdmlib): fix #9451 add ClassificationDefaultCacheStrategy
- 01:10 PM Revision 05f06f64 (cdmlib): ref #9443, ref #5575 tissue sample as DnaSample generation and initialization of DNA sample cache strategies
- 01:02 PM Revision 493cdee0 (cdmlib): ref #5575 refactor initialization of cache strategy (initialize when needed, not in constructor)
- 10:54 AM Revision 48b8ebbb (cdmlib): cleanup
- 10:36 AM Revision 35a741a0 (taxeditor): minor update variable name -continue
- 10:09 AM bug #9450: Save reverts previous changes in NameEditor
- Could not reproduce this problem.
I tried it started the editor out of my workspace but could not reproduce this is... - 09:54 AM bug #9450 (New): Save reverts previous changes in NameEditor
- mail WGB:
Hallo, wir haben bei Polygala leptocuaulis erst die Secundum Referenz des Taxon geändert, dann den Autor... - 10:01 AM Revision 025f40a8 (taxeditor): minor update variable name
- 08:45 AM Revision f349859b (taxeditor): avoid NPE
- 08:40 AM bug #7633: MySQLIntegrityConstraintViolationException - Duplicate entry during fact editing
- same exception for changing err. sec and sensu (sec.) reference:
~~~ text
last remote method : http://api.cyber... - 07:59 AM feature request #6016 (Rejected): ICN rules in cdm validation framework implemented
- rejecting this ticket since #6015 has also been rejected, see comments there
- 07:37 AM bug #9449 (New): Classes handling Dtos should not enherit from ICdmEntitySessionEnabled
- mail AM:
beim Ticketreview bin ich gerade darauf gestoßen, dass ICdmEntitySessionEnabled die Methode
public Co... - 07:33 AM task #9448 (In Progress): Remove all not e4 classes and rename "Remoting..." classes
- For a lot of classes there are e4 and not e4 versions, the not e4 versions are not needed anymore therefore we can re...
- 12:36 AM Revision af086d52 (cdmlib): cleanup
02/02/2021
- 10:40 PM Revision 828441bf (cdmlib): cleanup
- 06:50 PM feature request #9447 (New): Allow editing derivation events with multiple originals in specimen tree editor
- Currently the specimen tree editor only allows derivation hierarchies with derivation events having only 1 "original"...
- 06:27 PM feature request #9446 (New): Define possible derivation paths in SpecimenOrObservationType
- Even in theory, not all specimenOrObservation types can be derived from all specimenOrObservation types.
We may wa... - 06:06 PM task #9445 (New): [DISCUSS] Should GatheringEvent have descriptive data
- Currently descriptive data on the gathering site such as ecology data, site images or water quality parameters for wa...
- 05:54 PM feature request #9444 (New): Allow showing, editing and reusing GatheringEvent in specimen tree editor
- Currently the highes level of units in the derivative tree editor is the field unit. However, in the model and in rea...
- 04:12 PM Revision 7a03ad62 (taxeditor): ref #9443 broaden the usecases when dnasample can be added to field or derived unit
- 04:11 PM Revision b350a37e (taxeditor): cleanup
- 03:29 PM Revision aaf285ef (taxeditor): ref #9443 broaden the usecases when media can be added to field or derived unit
- 03:15 PM Revision bf23ce59 (taxeditor): ref #9443 fix tissue sample handling in DerivateLabelProvider
- 03:15 PM Revision ee4252e0 (taxeditor): ref #9443 fix tissue sample handling in SampleDesignationDetailElement
- 03:14 PM Revision 57cb15dd (taxeditor): cleanup
- 02:50 PM bug #9443 (In Progress): Improve handling of TissueSamples and others in SpecimenTreeEditor
- The saving as Derived unit has been implemented in 5.19 already (a3b7c1e7f7b79) so it is now high priority to also re...
- 02:48 PM bug #9443 (Closed): Improve handling of TissueSamples and others in SpecimenTreeEditor
- Tissue Samples are handled stored as DnaSample in specimen tree editor which is not correct as they never can have an...
- 02:26 PM feature request #9442 (New): Show warning for non conformant letter case in scientific names
- Rule:
First letter in a mononomial starts with a capital letter
Exceptions: none
First letter of an epithet sta... - 01:26 PM Revision 298f5d6d (taxeditor): cleanup
- 01:26 PM Revision 381249d5 (taxeditor): fix CCE for TissueSample in TissueSampleGeneralDetailElement
- 01:26 PM Revision a37746cc (taxeditor): cleanup
- 11:02 AM Revision 96983561 (cdmlib): remove System.exit(-1) from CdmPersistentDataSource
- 11:01 AM Revision 095aad96 (cdmlib): cleanup
- 10:23 AM bug #9386: orthographic variants should not be symmetrical
- So I think we can summerize that we agree that according to the code orthographic variants are a cluster of "names" w...
02/01/2021
- 10:46 PM feature request #9272 (Closed): Add missing nomenclatural status
- The above terms were added. A new framework for handling the status/nomenclatural standing was added in #9282. Some i...
- 10:22 PM feature request #5794 (Closed): Move other invalid names to the end
- Open issues moved to new tickets.
- 10:20 PM feature request #5794: Move other invalid names to the end
- missing handling of invalid designation name relationships moved to #9441
- 10:13 PM feature request #5794: Move other invalid names to the end
- missing invalid designation sign (dash) in data portal moved to #9440
- 08:05 PM feature request #5794: Move other invalid names to the end
- AM:
derzeit versuchen wir (also v.a. Walter und ich) die nomenklatorischen Status und v.a. die Namen, die lediglic... - 10:19 PM bug #9441 (Closed): Move names with invalid designation name relationships to the end in taxon comparator
- copied from #5794 and #9272
Names with relationship
* is later isonym of
* is later citation of
are not ye... - 09:42 PM bug #9440 (New): Invalid designation sign missing for some invalid designations in data portal
- The following status are missing the invalid designation symbol (dash)
* op. utique oppr.
* pro syn.
* nom. rej.... - 05:43 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
- Andreas Müller wrote:
> This to me seems to be fixed. Katja can you check, and if true add commit and correct target... - 04:06 PM feature request #7345 (Closed): [E+M] Common name references selectable in TaxEditor
- I think this works and can be closed.
- 04:05 PM feature request #7440 (Closed): E+M mark common name reference with according marker
- I checked the final import result and it looks ok.
~~~
SELECT r.id, r.uuid, r.titleCache, m.flag, mt.titleCache,... - 03:44 PM bug #7849 (Closed): Improve DB Preferences handling and saving in TaxEditor
- 03:43 PM feature request #7902 (Closed): Allow default values for PreferencePredicates
- As open issues are handled in separate tickets now, we can close this one.
- 03:42 PM feature request #7902: Allow default values for PreferencePredicates
- Andreas Müller wrote:
> For boolean and/or UUIDs /UUID Lists and maybe others we may think about separate enums to e... - 03:42 PM feature request #7902: Allow default values for PreferencePredicates
- Andreas Müller wrote:
> Generally implemented but for existing predicates we still need to define default values.
... - 03:37 PM feature request #9439 (New): Split PreferencePredicates depending on their type
- copied from #7902
"For boolean and/or UUIDs /UUID Lists and maybe others we may think about separate enums to expl... - 03:09 PM feature request #6016: ICN rules in cdm validation framework implemented
- To me it is very unclear if we will ever work on this ticket. So for there is only one rule in a sub-issue of yet in ...
- 02:45 PM feature request #6016: ICN rules in cdm validation framework implemented
- Can you add some more information on what is required here?
And also we should set assignee, category and target ver... - 02:37 PM feature request #6238 (Closed): add name of sec reference to display of concept relations in portal and a little header
- I think we can close this ticket. If there is still an open issue, please reopen a new ticket.
- 02:35 PM feature request #6043: Name export for JACQ
- Is this still required? If yes, can we add a milestone? Can we close otherwise?
- 10:53 AM bug #9290 (Resolved): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- this ticket is fully solved now, please review
- 10:51 AM feature request #9324 (Resolved): Enable designation reference editing in name type designation
- allowing null selection for type status in name type designation editor implemented.
so this ticket can be reviewed - 10:39 AM feature request #9324: Enable designation reference editing in name type designation
- **7: no idea if we need the editon of references here (I would say: no).**
editing of references is enabled be def... - 10:50 AM Revision 10f4a16e (cdm-vaadin): ref #9324 allowing null selection for type status in name type designation editor
- 10:34 AM feature request #9301 (Resolved): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- can be reviewed
- 10:33 AM feature request #9325 (Duplicate): Enable section in specimen type designation
- closing as duplicate of #9301
- 10:22 AM Revision f756340a (cdm-vaadin): ref #9290 limiting available designation status types for nom acts without a name - NameTypeDesignationEditor & improving previous code
- 09:52 AM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
- I seem to remember that I created this ticket in turn to an email conversation that the both of us had.
However, I d... - 09:36 AM bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
- AK, do you still remember the context for this ticket. What did not work, what did you test, which DB was involved?
- 09:22 AM bug #9390 (In Progress): Remaining issues for set secundum dialog
- the space between the checkbox area and the text is reduced, the line break in the description part I was not able to...
- 09:07 AM Revision f85472ea (taxeditor): ref #9390: reduce the space between checkboxes and text
- 08:15 AM Revision cb9686b7 (taxeditor): ref #9483: check publish flag permission for subtree operation
- 08:12 AM Revision 92745e3b (taxeditor): ref #9483: check publish flag permission for synonyms
- 08:05 AM bug #9438 (New): User without rights on publish flag can update publish flag of synonyms and subtree operations
- In the details view of a taxon the publish flag is disabled for users with unsufficent rights but in the details view...
- 07:18 AM feature request #9437 (New): Show user friendly text for permission denied exception
- If a user has not sufficient rights a permission denied exception is thrwon, this needs to be catched and a user frie...
- 07:13 AM bug #6273 (Duplicate): Drag&Drop a classification on the rights editing form throws NPE
- 07:10 AM feature request #9436 (New): Save dialog should have three options
- The Dialog inidcating saving is necessary should have three options:
1. Continue with saving
2. Continue without ... - 07:02 AM bug #9435 (New): Error when deleting without saving
- mail WGB:
Hallo,
beim Löschen ist u.a. Fehler aufgetreten (ich hatte nicht vorher gespeichert, das funktionierte ...
01/30/2021
- 12:15 AM feature request #9434 (Resolved): Add pollen, leaf and trichomes to tissue sample kind-of-unit vocabulary
- Applied in changeset commit:cdmlib|6acdd1e48e6eb255265fb139ba69310ef33f9f0c.
- 12:03 AM feature request #9434 (Closed): Add pollen, leaf and trichomes to tissue sample kind-of-unit vocabulary
- NK:
Erweiterung des Vokabulars über Kind-of-Unit finde ich erstmal eine gute Idee: ja, pollen, leaf, trichomes fal... - 12:13 AM Revision 6acdd1e4 (cdmlib): fix #9434 add pollen, leaf and trichomes to the PlantKindOfUnit.csv
01/29/2021
- 01:08 PM feature request #9433 (Closed): Improve titleCache generation for misapplications
- AM: "Eine andere Alternative, die evtl. auch Sinn macht, wäre, den titleCache in Abhängigkeit davon zu berechnen, ob ...
- 01:05 PM feature request #9432 (New): Add context menu "Add additional source" to misapplied names in TaxEditor
- This will be a shortcut for creating a new misapplication using the same name as for the given misapplication.
Not... - 12:43 PM bug #9351: Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
- the following lines in `server-scripts/jenkins-ci/taxeditor/repo-update-git.sh` need to be adapted, so that the "Mani...
- 12:22 PM bug #9351: Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
- Änderung ist: cdmlib-remote und cdmlib-print waren bislang dependencies von taxeditor.cdmlib. Jetzt sind es nur noch ...
- 11:47 AM bug #9351 (In Progress): Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
- Please refer to my commits above. This changing of the version in eu.etaxonomy.taxeditor.printpublisher/META-INF/MANI...
- 11:43 AM bug #9351 (Feedback): Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
- This ticket is unclear to me what is meant with "jenkins release script"?
I checked `server-scripts/jenkins-ci/tax... - 12:12 PM Revision 8822b122 (cdm-vaadin): ref #9290 limiting available designation status types for nom acts without a name - SpecimenTypeDesignationEditor
- 11:22 AM bug #8751 (Duplicate): Replace saveOrUpdate() in AbstractTermTreeEditor
- For me this is a duplicate for #8774. The main reason for switching to dtos was that save did not really work. So thi...
- 11:21 AM task #9389 (Closed): further improvement and revision of derivative filtering by type and DerivedUnitDTO
- 11:21 AM Revision bedede0b (cdmlib): ref #9389 removing TODO comment as the situation is clarified now
- 11:10 AM bug #9395 (Closed): DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
- 11:09 AM task #9253 (Closed): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- 11:07 AM task #9430 (New): revise OccurrenceServiceImpl._findRootUnitDTO(..) supports multiple origin paths
- 11:03 AM task #9430 (New): revise OccurrenceServiceImpl._findRootUnitDTO(..) supports multiple origin paths
- copied from #9253
* allow for walking multiple origin paths (second FIXME in code)
- 11:07 AM task #9431 (New): OccurrenceServiceImpl._findRootUnitDTO(..)
- copied from #9253
* The methods `OccurrenceServiceImpl._findRootUnitDTO` and `OccurrenceServiceImpl.findRootUnitDT... - 11:06 AM Revision bb3bba46 (taxeditor): ref #9351 fix cdmlib-print and -remote version in TaxEditor develop
- 11:05 AM Revision aa1fe054 (cdmlib): ref #9253 removing useless init strategy from within @Transactional method
- 10:02 AM feature request #3030: Jenkins php jobs: setup for code analysis, mess detection etc..
- Andreas Müller wrote:
> Assigned and prioritized issues go to "Reviewed Next Major Release" according to out ticket ... - 09:55 AM feature request #3030: Jenkins php jobs: setup for code analysis, mess detection etc..
- Assigned and prioritized issues go to "Reviewed Next Major Release" according to out ticket strategy.
- 09:30 AM feature request #3030: Jenkins php jobs: setup for code analysis, mess detection etc..
- this has not yet been sovled, so it is still open.
Target Version? Unassigned? Since it is assigned and since it has... - 09:35 AM bug #7579: Set up pipelines in Jenkins to replace the build pipelines
- Due to the repeated problems during the last relases it has become more important to switch to the "[Jenkins Pipeline...
- 08:52 AM bug #9429 (Closed): Taxon cache strategy handles sec details 2x in some cases
- looks fine and works as expected.
01/28/2021
- 11:34 PM bug #9429: Taxon cache strategy handles sec details 2x in some cases
- please review
- 11:34 PM bug #9429 (Resolved): Taxon cache strategy handles sec details 2x in some cases
- Applied in changeset commit:cdmlib|b240a635d7826790ba39aed8c110edd1253a4d80.
- 11:32 PM bug #9429 (Closed): Taxon cache strategy handles sec details 2x in some cases
- If the secundum reference is atomized (no protected titleCache, authorships exists, datePublished exists) the sec det...
- 11:33 PM Revision b240a635 (cdmlib): fix #9429 fix duplicated sec-detail in taxon cachestrategy
- 11:33 PM Revision 3dd931cb (cdmlib): cleanup
- 10:07 PM Revision 76af2015 (taxeditor): ref #9351 fix cdmlib-print and -remote version in TaxEditor master
- 04:51 PM Revision 36c5a39d (taxeditor): remove duplicated result variable (from incorrect merge)
- 02:19 PM Revision 0e690fc1 (cdm-server): Merge branch 'release/5.19.0' into develop
- 02:18 PM Revision 84ac3ea0 (cdm-server): updating poms for branch'release/5.19.0' with non-snapshot versions
- 02:18 PM Revision 0f1d9fa9 (cdm-webapp): Merge branch 'release/5.19.0' into develop
- 02:17 PM Revision 5cad30aa (cdm-webapp): updating poms for branch'release/5.19.0' with non-snapshot versions
- 02:17 PM Revision f43b2c71 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.19.0
- 01:56 PM Revision b8d65652 (taxeditor): Merge branch 'release/5.19.0' into develop
- 01:56 PM Revision 0e8e733e (taxeditor): Merge branch 'release/5.19.0'
- 01:54 PM Revision b37d89b9 (cdm-vaadin): Merge branch 'release/5.19.0' into develop
- 01:54 PM Revision 11723a18 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 01:50 PM Revision 11aa3ae6 (cdm-vaadin): updating poms for branch'release/5.19.0' with non-snapshot versions
- 01:50 PM Revision eacc0936 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0
- 01:50 PM Revision 5ecb0d84 (cdm-dataportal): Merge branch 'release/5.19.0' into develop
- 01:50 PM Revision 9f68f082 (cdm-dataportal): updating poms for branch'release/5.19.0' with non-snapshot versions
- 01:49 PM Revision 6c6615a3 (cdm-dataportal): release-preparation: production level css
- 01:43 PM Revision af911bff (cdmlib): Updating develop poms back to pre merge state
- 01:43 PM Revision f504641d (cdmlib): Merge branch 'master' into develop
- 01:43 PM Revision 655339ef (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 01:43 PM Revision fcb1fc89 (cdmlib): Merge branch 'release/5.19.0'
- 01:22 PM Revision da6cb609 (cdmlib): updating poms for branch'release/5.19.0' with non-snapshot versions
- 01:14 PM Revision aca878a2 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.19.0-SNAPSHOT
- 01:14 PM Revision f2ec937e (cdm-webapp): updating poms for 5.20.0-SNAPSHOT development
- 01:14 PM Revision 001ffcb1 (cdm-webapp): updating poms for 5.19.0 branch with snapshot versions
- 01:14 PM Revision cac5e963 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.20.0-SNAPSHOT
- 01:12 PM Revision 08681bf7 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0-SNAPSHOT
- 01:12 PM Revision a8bc1677 (cdm-vaadin): updating poms for 5.20.0-SNAPSHOT development
- 01:12 PM Revision 1f3e51f7 (cdm-vaadin): updating poms for 5.19.0 branch with snapshot versions
- 01:12 PM Revision 969c79c4 (cdm-vaadin): jenkins bumping cdmlib.version to 5.20.0-SNAPSHOT
- 01:07 PM Revision 5c22df91 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0-SNAPSHOT
- 01:06 PM Revision 1fcc52c5 (cdm-vaadin): updating poms for 5.20.0-SNAPSHOT development
- 01:06 PM Revision 2b50690d (cdm-vaadin): updating poms for 5.19.0 branch with snapshot versions
- 01:06 PM Revision 329b8e35 (cdm-vaadin): jenkins bumping cdmlib.version to 5.20.0-SNAPSHOT
- 01:04 PM Revision 0cb31f28 (taxeditor): Updated version in pom / project files to taxeditor version : 5.20.0-SNAPSHOT and cdmlib version : 5.20.0-SNAPSHOT
- 01:04 PM Revision c5eccbb4 (taxeditor): Updated version in pom / project files to taxeditor version : 5.19.0 and cdmlib version : 5.19.0
- 12:59 PM Revision c5df7948 (cdmlib): updating poms for 5.20.0-SNAPSHOT development
- 12:16 PM feature request #9428 (New): Asynchronous loading of terms
- copied from #9422, see there for more details:
An even better solution (maybe for the future/another ticket) could... - 12:11 PM feature request #9427 (Closed): Code cleaning in CdmPreferenceCache
- copied from #9422:
for CdmPreferenceCache.getAllTaxEditorDBPreferences() the code
~~~ java
PrefKey k... - 11:55 AM bug #9422 (Closed): Improve performance during Preferences startup
- yes, the first fix (term loading at start) is fixed for 5.19. So I create a new ticket for the remaining issues and c...
- 11:51 AM bug #9422 (Feedback): Improve performance during Preferences startup
- The first fix went into 5.19, correct?
So I think we should split the ticket and set this one to resolved? - 11:40 AM bug #9426 (Closed): Set publish flag for Synonyms in accordance with accepted taxon publish flag
- If a new synonym is added to an accepted taxon the publish flag should get the same value as the accepted taxon to av...
- 11:26 AM bug #9425: Common Names handling in CdmLight
- By the way the same should be done for distributions.
- 11:25 AM bug #9425: Common Names handling in CdmLight
- As I guess that this is a no brainer I put it to the current milestone.
- 11:06 AM bug #9425 (New): Common Names handling in CdmLight
- The feature CommonName allows descriptionElements of type TextData this is not handled in cdmLight.
We need to di...
01/27/2021
- 04:52 PM feature request #9338 (Closed): Restructure term menus
- I did not check again but I guess we can close this ticket.
- 04:51 PM bug #5710 (In Progress): Changing the database connection must reset all caches
- 03:25 PM Revision 05d3d1a8 (cdmlib): Updating develop poms back to pre merge state
- 03:25 PM Revision 6c128ca6 (cdmlib): Merge branch 'master' into develop
- 03:25 PM Revision e18bdb59 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 03:25 PM Revision c9a0ff54 (cdmlib): Merge branch 'release/5.18.0'
- 03:21 PM feature request #7704 (Closed): Dataportal specimen table should be able to show DerivedUnits without a FieldUnit
- 03:21 PM bug #9397 (Closed): Derivate tree view must show DerivedUnits even if the FieldUnit is missing
- 03:04 PM Revision 5f9032c7 (cdmlib): updating poms for branch'release/5.18.0' with non-snapshot versions
- 02:44 PM Revision 4e6fc4ae (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.20.0-SNAPSHOT
- 02:40 PM Revision 4abafde1 (taxeditor): Updated version in pom / project files to taxeditor version : 5.18.0 and cdmlib version : 5.18.0
- 02:40 PM Revision 4d3c9273 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0-SNAPSHOT
- 02:40 PM Revision 0d5ac911 (cdm-vaadin): jenkins bumping cdmlib.version to 5.20.0-SNAPSHOT
- 02:34 PM Revision de4be7b3 (cdm-dataportal): updating poms for 5.20.0-SNAPSHOT development
- 02:34 PM Revision 0d05d17e (cdm-server): updating poms for 5.20.0-SNAPSHOT development
- 01:10 PM bug #9360: Parsed hybrids can not be persisted
- Katja Luther wrote:
> Concepts with hybrid names are already handled correctly, because the list toSaveNewConcepts c... - 12:12 PM bug #9360: Parsed hybrids can not be persisted
- Concepts with hybrid names are already handled correctly, because the list toSaveNewConcepts contains all concepts, I...
- 01:03 PM Revision b2217f44 (cdm-dataportal): ref #9395 adapting test to modified service method
- 01:02 PM Revision 021cc0fe (cdmlib): ref #9395 solving problem in derivation-dto-graph assembly (replaced field units)
- 11:52 AM bug #7141 (Worksforme): Navigator does not update after swap synonym and accepted
- This is fixed in the meantime.
- 11:31 AM bug #9140 (Resolved): Deleting an image forgets moving operation
- this seems to be fixed with #7711
- 11:28 AM bug #9012 (Worksforme): Taxon Navigator does not refresh after moving a taxon between classifications
- This seems to be fixed in the meantime, therefore set to works for me.
- 11:20 AM Revision 5e0162fb (cdmlib): ref #7599 ref #9395 documenting requirements
- 09:28 AM bug #9346 (Resolved): Adding specimen to character matrix fails sometimes
- This is fixed.
- 09:16 AM Revision 7361927a (taxeditor): ref #9360: code cleaning
- 09:15 AM feature request #7975 (Closed): Implement a block to display name relations
- 09:14 AM task #9165: Eroneous registrations, published
- Wolf-Henning Kusber wrote:
> Das grundsätzliche Problem bleibt, dass sich registrierte Namen und Typen nach Publikat... - 12:04 AM Revision c1f1372f (taxeditor): fix #9360: fix saving of synonyms being hybrid formulas, some potential NPEs and some cleanup of commented code
01/26/2021
- 11:08 PM Revision 2085813d (taxeditor): cleanup
- 04:36 PM Revision f8decba5 (taxeditor): fix #9360: add parsed hybrid names to newly created names while merge taxonnameEditorInput
- 04:35 PM bug #9360 (Resolved): Parsed hybrids can not be persisted
- Applied in changeset commit:taxeditor|f8decba5d7a4bc8ec562b380190b1534a31c069a.
- 12:24 PM bug #9360: Parsed hybrids can not be persisted
- Probably the reason is that in TaxEditorInputE4.merge() only the hybrid parents for *new* parents are pre-saved. But ...
- 09:10 AM bug #9360: Parsed hybrids can not be persisted
- A similar issue in test DB
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/t... - 02:51 PM Revision 303a8ebc (cdm-vaadin): ref #9290 limiting designation sources to the publication unit and sub sections in NameTypeDesignationEditor
- 02:51 PM bug #9290 (In Progress): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- 02:25 PM bug #9405 (Closed): Fields set to irrelevant for cache should be set by state only
- This seems to work correctly (also for references), I only added the colouring of the date field for references to #9...
- 02:16 PM Revision 7e1a46e1 (cdm-vaadin): ref #9301 limiting designation sources to the publication unit and sub sections
- 02:15 PM Revision ff00d7e8 (cdmlib): ref #9301 static helper method to find the nom. act of a registration
- 02:13 PM feature request #9301 (In Progress): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- 01:58 PM feature request #9338 (Resolved): Restructure term menus
- Andreas Müller wrote:
> I found some further issues:
>
> * Namerelationshiptype tree editor opens taxon relations... - 01:12 PM feature request #9338: Restructure term menus
- translation works now as expected
- 12:57 PM feature request #9338 (Feedback): Restructure term menus
- I found some further issues:
* Namerelationshiptype tree editor opens taxon relationship trees and the other way r... - 01:58 PM Revision da31b745 (taxeditor): check all termeditors and termtree editors to be connected to the correct term type
- 01:22 PM bug #9369 (Closed): Reference Detail is missing in MediaSpecimen details view
- 01:05 PM Revision b8182374 (cdm-dataportal): ref #9397 supressing derivationTreeSummary in derivate tree
- 12:48 PM bug #7711: Bugs in media gallery
- This should be finally closed only when #9360 is also fixed as the code seems to be related and it needs to be tested...
- 11:12 AM bug #7711 (Resolved): Bugs in media gallery
- 11:09 AM bug #7711: Bugs in media gallery
- Andreas Müller wrote:
> The image issue seems to be fixed.
>
> There is still one new commented line:
>
> // ... - 10:08 AM bug #7711 (Feedback): Bugs in media gallery
- The image issue seems to be fixed.
There is still one new commented line:
// descriptio... - 12:43 PM bug #9149 (Duplicate): NPE when saving hybrid formula
- 12:40 PM bug #9422 (In Progress): Improve performance during Preferences startup
- Now the method to get dtos from serverside is used instead of getting the terms and create dtos on editor side.
- 12:39 PM Revision f8326308 (taxeditor): ref #9422: get termDtos from server
- 12:38 PM Revision c5c00803 (cdmlib): ref #9395 simplifying findByGeneticAccessionNumber() as extra code has no imact on performance
- 12:34 PM Revision 8195f008 (cdmlib): ref #9395 findByAccessionNumber() -> findByGeneticAccessionNumber(), preserving old method as deprecated
- 12:33 PM Revision e793ebfb (cdmlib): cleanup
- 12:31 PM task #9165: Eroneous registrations, published
- Das grundsätzliche Problem bleibt, dass sich registrierte Namen und Typen nach Publikation online/in Print Medien und...
- 12:18 PM bug #9395 (Resolved): DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
- 12:12 PM bug #9395 (In Progress): DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
- 12:16 PM Revision 2edb5aa1 (cdmlib): ref #9395 fully implementing maxDepth for derivative assembly and fixing OccurrenceServiceImpl._findRootUnitDTO()
- 11:52 AM feature request #7975 (Worksforme): Implement a block to display name relations
- can be closed
- 11:43 AM Revision f5792d50 (cdmlib): cleanup
- 11:30 AM Revision 39816367 (taxeditor): add taxon relations to propertypath of taxonbase
- 11:28 AM bug #9419: Typespecimen display in Vaadin when two designations having different field units are related to one name in one publication
- display in the dataportal is correct:
* http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name... - 11:13 AM Revision d5b342dc (taxeditor): ref #7711: adapt merge in TaxonEditorInputE4 to avoid exceptions for namerelations
- 10:54 AM Revision 2d263962 (taxeditor): avoid widgetIsDisposed exception
- 10:30 AM Revision a3b7c1e7 (taxeditor): create DerivedUnit of type TissueSample for tissueSamples instead of DNASample
- 09:59 AM Revision 13754873 (cdmlib): ref #9360 preliminary exception for debugging NPE
- 09:16 AM Revision ec8279f2 (taxeditor): cleanup
- 08:18 AM Revision f047dbf9 (cdm-dataportal): ref #9397 supressing summaryLabel in derivate tree
- 06:02 AM bug #9424: CdmImageInfo connection timeout implemented
- the missing timeout currently causes problems that let the dataportal tests fail
- 06:01 AM bug #9424 (New): CdmImageInfo connection timeout implemented
- the time out passed to the method `.CdmImageInfo.readMetaData(Integer timeOut) ` is never being used.
the timeout ...
01/25/2021
- 08:44 PM Revision 9280750d (taxeditor): cleaning up eclipse editor mess
- 08:32 PM Revision 18d0f149 (taxeditor): adapting editor to modified DTO property
- 08:17 PM Revision 2c559f97 (cdm-dataportal): fix #7704 fix #9397 adapting specimen tree and table view to cdmlib improvements for complete root unit display - adapting tests
- 07:49 PM Revision f6740b16 (cdmlib): ref #9389 ref #9415 improving information assembly in derivation bouquet by recursion - adapting test
- 07:26 PM bug #9397 (Resolved): Derivate tree view must show DerivedUnits even if the FieldUnit is missing
- Applied in changeset commit:cdm-dataportal|9783f0849a4b549f3b1513211011f4eb16c01eac.
- 07:26 PM feature request #7704 (Resolved): Dataportal specimen table should be able to show DerivedUnits without a FieldUnit
- Applied in changeset commit:cdm-dataportal|9783f0849a4b549f3b1513211011f4eb16c01eac.
- 07:26 PM Revision 9783f084 (cdm-dataportal): fix #7704 fix #9397 adapting specimen tree and table view to cdmlib improvements for complete root unit display
- 07:23 PM task #9253 (Resolved): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- possibly solved now
- 07:22 PM bug #8423 (Closed): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- works as expected
- 07:15 PM bug #9415 (Closed): DNA and other Derivatives missing in DerivedUnitDTO
- 07:12 PM bug #9415 (Resolved): DNA and other Derivatives missing in DerivedUnitDTO
- 07:15 PM bug #9395 (Closed): DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
- completed
- 07:13 PM task #9389 (In Progress): further improvement and revision of derivative filtering by type and DerivedUnitDTO
- problem 2.) solved
- 07:12 PM Revision 1d8a4f7e (cdmlib): ref #9389 ref #9415 improving information assembly in derivation bouquet by recursion, fixing multiple problems
- 06:00 PM bug #9423 (New): Improve language handling for TermType.getMessage() and others
- TermType.getMessage() is often used when creating menus but also in other context. It internally calls TermType.getMe...
- 05:26 PM bug #9422 (Closed): Improve performance during Preferences startup
- During startup the following function is called
CdmPreferenceCache.getAllTaxEditorDBPreferences by PreferenceUtil... - 04:48 PM Revision 4e1d9174 (taxeditor): ref #9369: add space between several fields in mediaspecimen details
- 04:47 PM bug #9369 (Resolved): Reference Detail is missing in MediaSpecimen details view
- Spaces are added, please have a look
- 04:20 PM bug #9369 (Feedback): Reference Detail is missing in MediaSpecimen details view
- Katja Luther wrote:
> move this ticket to 5.20 because moving the uri needs some more implementation.
Moving URI ... - 04:10 PM bug #9369 (In Progress): Reference Detail is missing in MediaSpecimen details view
- move this ticket to 5.20 because moving the uri needs some more implementation.
- 04:19 PM bug #9350 (Closed): Create new taxonnode ignores the publish flag
- 04:18 PM bug #9350: Create new taxonnode ignores the publish flag
- Andreas Müller wrote:
> Works as expeccted.
>
> Should we check after the release that the code merge worked corr... - 04:17 PM task #9421 (New): [Discuss] Move URI to top in MediaSpecimen
- copied from #9369
- 04:03 PM feature request #9420 (New): Harmonize Update- and ImportResult
- Actually the import result only contains counts of imported and updated objects, for better updating mechanisms it wo...
- 04:03 PM bug #8874 (Resolved): move taxon is reverted when taxon is edited afterwards
- I want to check again what I meant therefore I put it back to review to remind myself to do so.
- 04:01 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- Andreas Müller wrote:
> Katja Luther wrote:
> > Maybe we should think about a more detailed ImportResult, but there... - 03:59 PM bug #8874 (Closed): move taxon is reverted when taxon is edited afterwards
- 03:47 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- Andreas Müller wrote:
> It seems to work. However, I do not fully understand, why. Don't the changes try to guarante... - 10:29 AM bug #8874: move taxon is reverted when taxon is edited afterwards
- Katja Luther wrote:
> Maybe we should think about a more detailed ImportResult, but therefore we need to implement i... - 10:28 AM bug #8874: move taxon is reverted when taxon is edited afterwards
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > I also wonder, why in the code only th... - 10:22 AM bug #8874: move taxon is reverted when taxon is edited afterwards
- Katja Luther wrote:
> Andreas Müller wrote:
> > I also wonder, why in the code only the UpdateResult part was adapt... - 09:43 AM bug #8874: move taxon is reverted when taxon is edited afterwards
- Andreas Müller wrote:
> I also wonder, why in the code only the UpdateResult part was adapted, but not the ImportRes... - 09:39 AM bug #8874: move taxon is reverted when taxon is edited afterwards
- Andreas Müller wrote:
> Another more critical issue related to the code reviewed:
>
> The following code:
>
> ... - 03:40 PM Revision d9837e21 (taxeditor): fix #7711: fix delete of media if another not persisted media exist
- 03:39 PM bug #7711: Bugs in media gallery
- Andreas Müller wrote:
> >if a transient (id>0) media is removed all volatile (id=0) media are also removed automatic... - 03:39 PM bug #7711 (Resolved): Bugs in media gallery
- Applied in changeset commit:taxeditor|d9837e213c6caef559688ebaaac5a86f3fe31cb0.
- 02:25 PM Revision c3b6d097 (taxeditor): ref #9405 , ref #4944 fix NPE in CacheRelevanceHelper
- 01:23 PM Revision 6fd05c62 (taxeditor): ref #9338: adapt translations in term menues - Status -> Kategorie
- 11:31 AM Revision 3c8dd48a (taxeditor): ref #9338: adapt translations in term menues - fix typo
- 11:28 AM feature request #9338 (Resolved): Restructure term menus
- The german labels are adapted, please have a look whether everything is ok now.
- 11:26 AM Revision c83d1ee7 (cdmlib): avoid NotSerializableException for SourceDto
- 11:22 AM Revision 2c763ca6 (taxeditor): ref #9338: adapt translations in term menues
- 11:19 AM Revision b1a9da41 (taxeditor): code cleaning
- 11:18 AM bug #9419 (New): Typespecimen display in Vaadin when two designations having different field units are related to one name in one publication
- Test System as of 25 JAn 2021:
Typespecimen display in Vaadin is not correct when two designations are related to on... - 11:03 AM Revision fa5e785a (taxeditor): avoid NPE for newly created TermTree
- 09:29 AM bug #9353: Copy & Paste creates dirty data in term trees
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Paste requires save first. Is this really needed? Most task are n... - 09:28 AM bug #9353 (Closed): Copy & Paste creates dirty data in term trees
- 09:27 AM bug #9354 (Closed): Sorting in distribution editor is broken
- The code looks fine. Close the ticket.
- 09:25 AM bug #9365 (Closed): Reuse taxon does not work in new Taxon dialogue
- the looks fine, close the ticket.
- 09:11 AM feature request #9418 (New): Improve entering of date published
- Normally the date element is collapsed in the editor and the users forget to enter the publishing date of a reference...
- 08:20 AM feature request #8756: Refresh button for structure tree and property tree in Character Editor
- is it planned that the refresh also can be triggered by pressing the `F5` key?
01/24/2021
- 03:42 PM feature request #9404: Open issues for Tropicos Import
- Chuck;
Here’s the answer from Paul. We don’t plan to change the output. Web service will come later on after we ha...
01/23/2021
- 02:46 AM bug #9360: Parsed hybrids can not be persisted
- maybe a duplicate for #9149
- 02:45 AM bug #9360 (In Progress): Parsed hybrids can not be persisted
- 02:39 AM bug #9405: Fields set to irrelevant for cache should be set by state only
- The general idea of the refactoring is:
* in a first step all elements which are relevant for a cache get do regis... - 02:23 AM bug #9405 (Resolved): Fields set to irrelevant for cache should be set by state only
- This should be fixed. I moved advanced issues to new ticket #9417. Please review.
This is also related to #4944. P... - 02:19 AM bug #9405: Fields set to irrelevant for cache should be set by state only
- This is mostly fixed. Some advanced features stay:
* trigger updateCacheRelevance() with ToggledText state change ... - 02:29 AM bug #4915: Abbrev title for person should never be orange
- This should also be fully fixed with #9405 being implemented. Please review again as the frameworks has been fully re...
- 02:25 AM bug #4944: "Protected" indication for references needs to be improved
- with implementation of #9405 this should be fully fixed now. Please review with new implementation.
>The following... - 02:21 AM feature request #9417 (New): Advanced issues for cache relevance handling
- This is mostly fixed. Some advanced features stay:
* trigger updateCacheRelevance() with ToggledText state change ... - 02:08 AM Revision 202edbff (taxeditor): ref #9405 , ref #4944 refactor the cache protection indication handling in TaxEditor details view elements
- 02:00 AM Revision 2a4c2da5 (taxeditor): handle inReferences genericly with ReferenceType.inReferenceContraints
- 01:55 AM Revision aeb80bf1 (taxeditor): cleanup
01/22/2021
- 08:24 PM Revision afb8223a (taxeditor): cleanup
- 07:38 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- Published Specimen Types which are holotypes are displayed as "designated by" in Vaadin. For new names this is now im...
- 07:23 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- Selection disabled/enabled in SpecimenTypeDesignationEditor see #9301
Selection disabled/enabled in NameTypeDesignat... - 07:10 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- re-labeled to "Designation reference": perfect
function is there but not user-friendly
Only the references in u... - 07:18 PM feature request #9301: SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- The fields are shown, if needed.
The selection of type status (all checked) in SpecimenTypDesignationEditor is fin... - 05:07 PM Revision d09b9168 (taxeditor): ref #9338: adapt term menu
- 04:32 PM Revision 6fa29b1d (cdmlib): cleanup
- 04:32 PM Revision 0b2155a2 (cdmlib): ref #9365 update code for reuse taxon (change order for check name and check taxon and throw exceptions if not exists)
- 04:31 PM feature request #8554 (Duplicate): Allow drag&drop from character into FeatureTrees
- 04:26 PM bug #9365 (Feedback): Reuse taxon does not work in new Taxon dialogue
- I changed it a bit the way that first it is checked if a taxon is reused, if not a new taxon is created (with accordi...
- 09:12 AM bug #9365 (Resolved): Reuse taxon does not work in new Taxon dialogue
- Andreas Müller wrote:
> Andreas Müller wrote:
> > As you are now using a different method for createNewTaxonNode al... - 04:08 PM Revision fb33c0e3 (cdmlib): cleanup
- 03:52 PM bug #9372 (Closed): in media details view unprotected title cache is not updated when underlying data is changed
- 11:25 AM bug #9372: in media details view unprotected title cache is not updated when underlying data is changed
- this is fixed now, please review.
- 03:47 PM bug #9412 (Closed): Fix reuse existing name in NewTaxonWizard
- 09:40 AM bug #9412 (Resolved): Fix reuse existing name in NewTaxonWizard
- please review.
- 09:33 AM bug #9412 (Closed): Fix reuse existing name in NewTaxonWizard
- I got a very similar NPE when deleting the "reuse existing name":
~~~
last remote method : http://test.e-taxono... - 03:45 PM bug #9353 (Feedback): Copy & Paste creates dirty data in term trees
- Andreas Müller wrote:
> Paste requires save first. Is this really needed? Most task are now handled without save-req... - 09:50 AM bug #9353 (Resolved): Copy & Paste creates dirty data in term trees
- Duplicates can be copied now (for trees allowing duplicates)
The problem of two error dialogs I could not reproduce. - 03:35 PM feature request #9338: Restructure term menus
- Some translations are missing.
Easy: Language, Extension-Type
Maybe also possible: Stage, Nametypedesignation S... - 03:28 PM feature request #9338 (Feedback): Restructure term menus
- There is another issue for trees:
![](picture753-1.png)
Dna Marker is duplicated, the first is wrong. At the s... - 11:59 AM feature request #9338 (Resolved): Restructure term menus
- Adapted the menues, please have a look.
- 03:10 PM bug #9354 (Feedback): Sorting in distribution editor is broken
- Works as expected. We only could do some further improvements which I put in a new ticket #9416.
Please review my ... - 02:10 PM bug #9354: Sorting in distribution editor is broken
- I unified the 2 TaxonNodeDao.listChildrenOf(...) methods as I don't think it is good to have recursion input paramete...
- 11:37 AM bug #9354: Sorting in distribution editor is broken
- Andreas Müller wrote:
> There is an NPE issue in TaxonNodeByRankAndNameComparator if name or rank does not exist in ... - 11:36 AM bug #9354: Sorting in distribution editor is broken
- There is an NPE issue in TaxonNodeByRankAndNameComparator if name or rank does not exist in taxon. I fixed it.
- 03:10 PM feature request #4298 (New): refresh views after changing rights
- As the description is hopefully clear now we can put this back to "New" to avoid having it in the feedback tickets al...
- 03:03 PM task #9416 (New): Improve distribution editor sort methods
- Currently in TaxonNode.listChildrenOfRecursive 2 different implementations are used to compute the result (first is u...
- 02:53 PM Revision 89ce56b3 (cdmlib): make comparators of TaxonNodeXxxSortMode singletons
- 02:47 PM Revision 1ed16f10 (cdmlib): cleanup
- 02:15 PM Revision aa8a8f74 (taxeditor): adapt Editor to moved TaxonNodeSortMode
- 01:52 PM Revision 49e5a25a (cdmlib): ref #9354 unify TaxonNodeDao.listChildrenOf(...) methods (fix test)
- 01:27 PM Revision 1c63b6c5 (cdmlib): ref #9354 unify TaxonNodeDao.listChildrenOf(...) methods
- 01:27 PM Revision 65112c51 (cdmlib): move TaxonNodeSortMode to model.compare
- 01:27 PM Revision 97118446 (cdmlib): cleanup
- 12:20 PM bug #9413 (Closed): DNA details lable "Ratio of absorbance ..." corrected
- Fixed.
By the way, such label adaptations should always go into the current milestone (as they are extremely easy ... - 12:17 PM bug #9413 (Resolved): DNA details lable "Ratio of absorbance ..." corrected
- Applied in changeset commit:taxeditor|ad2d549777a2629b3ff79f663792dcc644df9f55.
- 09:38 AM bug #9413 (Closed): DNA details lable "Ratio of absorbance ..." corrected
- these two labels denote the ratio of two wavelengths therefore the numbers must be concatenated with a slash
* "R... - 12:19 PM feature request #4867 (In Progress): Add menu item for subtree cloning
- 12:17 PM Revision ad2d5497 (taxeditor): fix #9413 fix separator for absorbance ratio
- 12:16 PM Revision c955d553 (taxeditor): ref #9142: code cleaning
- 12:16 PM bug #9142 (Closed): The Agent search dialog shows duplicated entries
- cleaned the code and close ticket.
- 12:00 PM Revision 0b1cfd87 (taxeditor): ref #9338: some adaptions in menues
- 12:00 PM feature request #9192 (Closed): Layout issues for source in taxonnode details
- 11:58 AM Revision f5d64be9 (taxeditor): ref #9264: rename linkWithTaxon parameter
- 11:56 AM bug #9264 (Closed): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- Renamed parameter and close this ticket.
- 11:56 AM Revision d7a609e3 (cdmlib): ref #9276 renaming DerivationTreeSummaryDTO fields in SpecimenOrObservationBaseDTO
- 11:56 AM Revision 1e436a0b (cdmlib): ref #9276 documenting DerivateDataDTO and renaming to DerivationTreeSummaryDTO
- 11:56 AM Revision 408979d3 (taxeditor): ref #9395 adapting services and web-services to return all root units - adapting taxeditor - generic type fix
- 11:53 AM Revision a7dcea2c (cdm-dataportal): ref #9276 adapting portal to renamed DerivationTreeSummaryDTO fields in SpecimenOrObservationBaseDTO
- 11:46 AM Revision 25b933c4 (cdm-dataportal): ref #7704, ref #9395 using web-services now returning all root units
- 11:33 AM Revision 3f7808ea (cdmlib): try to fix TaxoNodeByNameComparator issue in application context files.
- 11:25 AM Revision cf3b8a2b (taxeditor): adapt comparators to new model.compare structure (cont.)
- 11:25 AM Revision 5dbff5a2 (taxeditor): ref #9372: adapt title after changing uri of media
- 11:16 AM Revision b26f84c2 (cdmlib): fix compile error and rename TaxonNodeNaturalComparator
- 11:07 AM Revision eb1471a5 (cdmlib): moving further Comparators to model.compare
- 11:07 AM Revision 9bae7299 (cdmlib): cleanup
- 11:07 AM Revision 6502eaa6 (cdmlib): ref #9354 fix NPE in TaxonNodeByRankAndNameComparator
- 10:53 AM Revision 70e9fc0d (taxeditor): ref #9395 adapting services and web-services to return all root units - adapting taxeditor
- 10:52 AM Revision 9fcfd180 (cdmlib): ref #9395 adapting services and web-services to return all root units
- 10:27 AM Revision 35fb70b7 (taxeditor): fix compile error and cleanup
- 10:19 AM Revision 5330bd70 (cdm-vaadin): adapt comparators to new model.compare structure
- 10:05 AM Revision af95d1c1 (taxeditor): adapt comparators to new model.compare structure and some cleanup
- 10:02 AM Revision bc39bc21 (cdmlib): move some comparators to model.compare package, add subpackages to model.compare and some cleanup
- 10:00 AM bug #9415 (Closed): DNA and other Derivatives missing in DerivedUnitDTO
- example:
http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/occurrence/8259122c-7140-44f3-980e-1a65... - 09:47 AM Revision e12ba935 (taxeditor): ref #9353: fix check for duplicates when duplicates allowed
- 09:42 AM bug #9414 (New): DNA details lable "Concentration" with unit
- these labels "Concentration" should include the unit:
"Concentration [ng/μl]"
- 09:37 AM bug #9393: NPE when removing parent from TaxonNode editor
- splitted the ticket: ticket #9412 handles the exception when reusing a name and this ticket the NPE when removing a p...
- 09:14 AM bug #9356 (Closed): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- Andreas Müller wrote:
> For TypeDesignationComparator the line
>
> ~~~
> return o1.getUuid().compareTo(o2.getUui... - 08:39 AM Revision fc69fc31 (cdmlib): implement Comparator contract for TypedEntityComparator.java correctly
01/21/2021
- 08:42 PM Revision a3fe9a5a (taxeditor): cleanup
- 08:35 PM Revision 56613858 (taxeditor): ref #9356 clean up SourceComparator
- 08:35 PM Revision 35fb8b4d (taxeditor): cleanup
- 08:16 PM bug #9356: Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- The SourceComparator looks fine. I only cleaned it up a bit.
- 07:34 PM bug #9356 (Feedback): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- For TypeDesignationComparator the line
~~~
return o1.getUuid().compareTo(o2.getUuid());
~~~
will never be rea... - 07:41 PM Revision 0287cfe2 (cdmlib): fix compile error
- 07:26 PM Revision a407a44c (cdmlib): improve generics for AgentService.getUuidAndAbbrevTitleCache
- 07:25 PM Revision a5502a9b (cdmlib): cleanup
- 07:23 PM Revision 9c187406 (cdmlib): ref #9356 adapt TypeDesignationComparator to fix case when both type status are null ; and cleanup null compare part above
- 06:44 PM bug #9353: Copy & Paste creates dirty data in term trees
- In general the copy&past works now.
- 06:43 PM bug #9353 (Feedback): Copy & Paste creates dirty data in term trees
- Paste requires save first. Is this really needed? Most task are now handled without save-requirement so it breaks a b...
- 06:36 PM bug #9353: Copy & Paste creates dirty data in term trees
- Andreas Müller wrote:
> There is a duplicate error message when c%p a duplicate term to a non-duplicate allowing tre... - 06:35 PM bug #9353: Copy & Paste creates dirty data in term trees
- The error message on duplicate also appears if the tree allows duplicates:
![](picture752-1.png) - 06:31 PM bug #9353: Copy & Paste creates dirty data in term trees
- There is a duplicate error message when c%p a duplicate term to a non-duplicate allowing tree.
![](picture135-1.pn... - 06:06 PM feature request #8756: Refresh button for structure tree and property tree in Character Editor
- sorry, I forgot to re-assign this to you
- 06:04 PM bug #9142: The Agent search dialog shows duplicated entries
- Andreas Müller wrote:
> By the way can't we remove the commented line?
I deleted the line and also cleaned up the... - 04:37 PM bug #9142: The Agent search dialog shows duplicated entries
- Katja Luther wrote:
> Andreas Müller wrote:
> > Thats what I thought. It is actually not really a wrong implementat... - 05:53 PM Revision 23210238 (taxeditor): call merged createTaxon method
- 05:40 PM Revision b09fb3b9 (cdmlib): cleanup and improve generics
- 05:33 PM Revision 94241b1b (taxeditor): fix create taxon with reused taxon
- 05:31 PM Revision ca23ea19 (cdmlib): fix delete taxon/name and merge createTaxon methods - continue
- 04:13 PM Revision 29d1e817 (cdmlib): cleanup
- 04:13 PM Revision 3133b77d (cdmlib): ref #9142 code simplification
- 04:02 PM feature request #8289 (Closed): Add "Open in RefObj view" to term editor context menu
- Looks good now.
- 02:34 PM feature request #8289 (Resolved): Add "Open in RefObj view" to term editor context menu
- Applied in changeset commit:taxeditor|9d09fe70f4a9159120f70754988dad2cf500365e.
- 02:04 PM feature request #8289 (Feedback): Add "Open in RefObj view" to term editor context menu
- Works as expected. Only issue: in other places we have the open in menu just below the New menu and also it is separa...
- 04:00 PM bug #8874 (Feedback): move taxon is reverted when taxon is edited afterwards
- Another more critical issue related to the code reviewed:
The following code:
~~~
for (Map.Entry<String, Integ... - 03:58 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- I also wonder, why in the code only the UpdateResult part was adapted, but not the ImportResult. Is this specific to ...
- 03:55 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- It seems to work. However, I do not fully understand, why. Don't the changes try to guarantee that all open taxa rela...
- 03:35 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- I think I remember the mail discussion about this issue. There, we discussed that this happens only if the taxon was ...
- 03:48 PM Revision 3e89c139 (taxeditor): cleanup
- 03:31 PM Revision 5f44e659 (cdmlib): ref #9301 extending init-strategy to include typeDesignation.source.*
- 03:28 PM task #9411 (New): use termtrees for user defined limited term lists
- this accounts for:
* nomenclatural status type terms
* ...
see `RegistrationTermLists` & an attempt to rep... - 03:22 PM bug #9344 (Closed): Datasets in Descriptive Dataset Navigator should be ordered
- looks fine
- 03:20 PM bug #7711: Bugs in media gallery
- >if a transient (id>0) media is removed all volatile (id=0) media are also removed automatically
this still happen... - 03:16 PM bug #7711 (Feedback): Bugs in media gallery
- When removing the last image of the image gallery I got:
~~~
last remote method : http://test.e-taxonomy.eu:80/cd... - 03:14 PM feature request #8981: Improve NameStatus in UI
- please review
- 03:14 PM feature request #8981 (Resolved): Improve NameStatus in UI
- Applied in changeset commit:cdm-vaadin|86550c96c1fc9e574e8dc8a9c4ae6289a47f2bd5.
- 03:14 PM Revision 86550c96 (cdm-vaadin): fix #8981 checkbox to toggle the name status tabel in-/visible
- 02:40 PM Revision c113bc55 (cdmlib): merge the two create taxon methods
- 02:39 PM Revision 6730fb60 (cdmlib): fix isDeletable for taxon with name used only once
- 02:34 PM Revision 9d09fe70 (taxeditor): fix #8289: add sep and move command
- 02:29 PM feature request #8975: Name Status filtered in UI
- ready for review
- 02:27 PM feature request #8975 (Resolved): Name Status filtered in UI
- Applied in changeset commit:cdm-vaadin|d8791ff266ee1c66cdb6a0d20a57844107435294.
- 02:27 PM Revision d8791ff2 (cdm-vaadin): fix #8975 limiting available nom status types
- 02:05 PM bug #8522: Make type status mandatory in Name type designation editor
- please review
- 02:04 PM bug #8522 (Resolved): Make type status mandatory in Name type designation editor
- Applied in changeset commit:cdm-vaadin|b892b7623a4a49d8a4e7669405b3dbe6e2dcca11.
- 02:04 PM Revision b892b762 (cdm-vaadin): fix #8522 type status mandatory in Name type designation editor
- 01:58 PM bug #9372: in media details view unprotected title cache is not updated when underlying data is changed
- It still does not seem to work. Now, even the title in the bulk editor table does not change anymore.
Do we talk a... - 01:43 PM bug #9264 (Feedback): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- seems to work.
Is the parameter boolean isLinkWithTaxon really needed? it is not used. Is it only to have any para... - 01:07 PM bug #9410 (New): DNA Marker is not shown correctly on specimen page
- instead it shows only "Object":
![](picture342-1.png)
Example: http://portal.cybertaxonomy.org/algaterra-new/cd... - 01:02 PM bug #9365 (Feedback): Reuse taxon does not work in new Taxon dialogue
- Andreas Müller wrote:
> As you are now using a different method for createNewTaxonNode all the TaxonNode data like s... - 12:22 PM bug #9365 (Resolved): Reuse taxon does not work in new Taxon dialogue
- please review.
- 11:53 AM bug #9365: Reuse taxon does not work in new Taxon dialogue
- This is fixed with the last commit for #9393
- 11:49 AM bug #9365: Reuse taxon does not work in new Taxon dialogue
- As you are now using a different method for createNewTaxonNode all the TaxonNode data like source and status are not ...
- 11:38 AM bug #9365 (Feedback): Reuse taxon does not work in new Taxon dialogue
- The disabling of the secundum is still missing.
- 12:58 PM feature request #9338: Restructure term menus
- I moved questions on unhandled term types to new ticket #9409
- 12:52 PM feature request #9338 (Feedback): Restructure term menus
- 12:51 PM feature request #9338: Restructure term menus
- The new menu looks much better now (also mentioned by AK recently). Good we changed this.
- 12:49 PM feature request #9338: Restructure term menus
- And a small change to my above description: can we put Modifier and Scope into 1 section followed by another section ...
- 12:47 PM feature request #9338: Restructure term menus
- TaxonNodeAgentRelationType should be also editable for vocabularies (sorry, my comment was maybe not clear)
Langua... - 12:57 PM feature request #9409 (New): [Decision] Which terms should be editable in term tree editor (and vocabulary editor)
- copied from #9338
Open term types:
DerivationEventType (not in use yet?) => if to use last section
DnaQualityT... - 12:52 PM feature request #9301: SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- improvements to the layout will be done in #9408
The requested fields are now added and can be tested. - 12:45 PM feature request #9301 (Resolved): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- Applied in changeset commit:cdm-vaadin|06db1b37a7f659fb7e18079700103f41b16bfd10.
- 12:51 PM feature request #9408 (New): SpecimenTypeDesignation collection editor with grid-form per item instead of looong rows
- The SpecimenTypeDesignation collection editor the SpecimenTypeDesgnationEditor shows all fields in a very long row.
... - 12:45 PM Revision 06db1b37 (cdm-vaadin): fix #9301 adding designationReference and detail to specimen type designation editor
- 12:30 PM bug #9393: NPE when removing parent from TaxonNode editor
- Shouldn't we split the ticket? This ticket is mostly on NPEs not on general problems with parent handling.
- 12:20 PM bug #9393 (In Progress): NPE when removing parent from TaxonNode editor
- The NPE when removing reused name is fixed. The problem when removing parent is a little more difficult, therefore th...
- 10:23 AM bug #9393: NPE when removing parent from TaxonNode editor
- These are different issues but very related to the given issue therefore I mention it here. If difficult to fix feel ...
- 10:17 AM bug #9393: NPE when removing parent from TaxonNode editor
- When opening the NodeEditor from classification the parent field is still empty. When selecting a parent the Labels a...
- 10:15 AM bug #9393 (Feedback): NPE when removing parent from TaxonNode editor
- I got a very similar NPE when deleting the "reuse existing name":
~~~
last remote method : http://test.e-taxono... - 12:24 PM bug #9350 (Feedback): Create new taxonnode ignores the publish flag
- Works as expeccted.
Should we check after the release that the code merge worked correctly? Or should we close tic... - 12:03 PM task #9407 (New): Reuse taxon should check classification before save
- Reusing a taxon is not allowed in the same classification. If doing so anyway in the taxon node dialogue an error is ...
- 12:03 PM Revision f82805a7 (taxeditor): ref #9393: avoid NPE
- 11:56 AM Revision 39973b73 (taxeditor): ref #9393: disable sec selection if reused taxon is used
- 11:37 AM bug #9369: Reference Detail is missing in MediaSpecimen details view
- Andreas Müller wrote:
> The missing reference detail is fixed.
>
> The spaces between some fields are still missi... - 11:06 AM bug #9369 (Feedback): Reference Detail is missing in MediaSpecimen details view
- The missing reference detail is fixed.
The spaces between some fields are still missing.
Moving the URI to top ... - 11:05 AM Revision 46f38420 (taxeditor): ref #9393: fix problems when removing reused name - code cleaning
- 11:05 AM Revision 6d284e79 (taxeditor): ref #9393: fix problems when removing reused name
- 10:53 AM bug #9371 (Closed): Media bulk does not persist data anymore
- No it saves as expected
- 10:50 AM bug #9382 (Closed): For nomenclatural source show taxonname in referencing objects view
- Looks fine.
- 10:38 AM bug #9382: For nomenclatural source show taxonname in referencing objects view
- I dis some further changes and NPE prevention. Please have a look and close if you think it is ok.
- 10:37 AM bug #9382: For nomenclatural source show taxonname in referencing objects view
- Applied in changeset commit:taxeditor|db226011dbf5f1c7de1060d15dce17f7faaed67f.
- 10:48 AM feature request #9375 (Closed): Alphabetical order for reference type drop down
- Works as expected.
- 10:43 AM bug #9391 (Closed): If named area level does not exist remove the level information
- Looks fine
- 10:37 AM Revision db226011 (taxeditor): fix #9382 handle potential NPE and adapt label to make clear that it is not the name itself but the source that is referencing
- 10:26 AM Revision 36fdf767 (taxeditor): cleanup
- 09:43 AM feature request #9404: Open issues for Tropicos Import
- Maybe the format will change in future:
WGB to Chuck Miller:
I see that the Tropicos Name Matching is working aga... - 09:06 AM bug #9403 (Closed): cleanup function cdm_related_taxon() from used paramerters and css class attributes
- 09:06 AM bug #9403 (Resolved): cleanup function cdm_related_taxon() from used paramerters and css class attributes
- Applied in changeset commit:cdm-dataportal|846f21e18654a33f2027824599149834c0aff88a.
- 09:05 AM Revision 846f21e1 (cdm-dataportal): fix #9403 cleanup function cdm_related_taxon() from used paramerters
01/20/2021
- 08:06 PM bug #6164: cyprus: invalid data causing crash in modifier editor
- test if this is still an open issue.
- 07:55 PM feature request #3502: extensions not yet handled in compose_cdm_specimenOrObservation()
- target version is missing! Put on current milestone like other specimen related issues?
- 07:49 PM task #3485: object graph returned by REST services can be specified by initstrategy
- target version is missing! Is this still an open issue?
- 07:48 PM bug #3480: tagged text with square bracket confuses json
- target version is missing. I put it to same milestone as related ticket. Please change if this is wrong.
- 07:40 PM feature request #3030: Jenkins php jobs: setup for code analysis, mess detection etc..
- target version is missing! Is it still an open issue?
- 07:37 PM feature request #6016: ICN rules in cdm validation framework implemented
- target version is missing! Is it still an open issue?
- 07:35 PM feature request #6598: Migrate commands and handlers
- target version is missing!
Can we assess in current milestone what still needs to be done to close this ticket. Th... - 07:30 PM task #9377: Update of other platform user documentation
- target version is missing!
- 07:27 PM feature request #8182: show blast search result
- is this still an open issue? Should it be reviewed? Should open issues be moved to new ticket?
Is there an example... - 07:25 PM bug #7829 (Closed): Improve deduplication of parsed names and references
- This has been finished (with few exceptions) in #9085.
- 07:10 PM feature request #6133 (Closed): Improve Rank Webservice
- Created follow up #9406 for open issue, close this ticket
- 07:09 PM feature request #9406: Open issue for Edaphobase rank web service
- put to low priority as edaphobase is currently not active
- 07:08 PM feature request #9406 (Rejected): Open issue for Edaphobase rank web service
- follow up for #6133
Open issue:
* representations are not mapped to a language
- 06:49 PM task #5085: Aggregate Distributions
- This is a duplicate for some other tickets: #5176, #8679, #8677 and maybe someother.
Should be tested on FauEu Data ... - 06:33 PM bug #7665 (Closed): ConcurrentModificationException when closing Editor
- If at all it happens very seldom. We should open a new ticket with a new stacktrace if it happens again.
- 06:23 PM bug #1119 (Duplicate): [PARSER] Duplicate inreferences created during parsing are NOT merged when data gets saved
- This has been fully fixed in #9085 so close this ticket as duplicate
- 06:04 PM bug #3737 (Closed): Protected caches for taxa and names behave inconsistent
- The first issue is solved. The second was improved, however, it still sometimes works inconsistent meaning that the s...
- 06:04 PM bug #9405 (In Progress): Fields set to irrelevant for cache should be set by state only
- 06:02 PM bug #9405 (Closed): Fields set to irrelevant for cache should be set by state only
- follow up from #3737
Currently this is not yet the case as they are set during UI update by calling refresh only o... - 05:52 PM feature request #6965 (Closed): Tropicos Import
- open issues copied to #9404, close this
- 05:51 PM feature request #9404 (New): Open issues for Tropicos Import
- copied from #6965
* Tests genauer
* Progressmonitor
* "Analyse" vor Import
* Klären, welche Funktionen von ... - 04:25 PM Revision d016b62b (cdmlib): ref 6308: result should be ok, if taxon can be deleted but not the name
- 04:16 PM Revision 931ee538 (taxeditor): typo
- 03:13 PM bug #7223 (Closed): ReferenceEditor: disable fields depending on the Reference type
- Andreas Müller wrote:
> Personal Communication has no DOI neither in the interfaces nor in TaxEditor. If this is ava... - 03:12 PM Revision 46f7b66d (cdmlib): ref #7223 proper definition of IPersonalCommunication in ReferencePropertyDefinitions
- 02:53 PM bug #7764 (Closed): Fix classification and synonym bug in taxon name freetext search
- works as expected, see for example the http://caucasusflora.org/ where subtree limitation, classification and `doSyno...
- 02:46 PM bug #7108 (Closed): supress unwanted sourcetypes in handle_annotations_and_sources()
- Andreas Müller wrote:
> Works fine now and ticket can be closed.
>
> I only wonder if only a citation micro refer... - 02:40 PM feature request #7720 (Closed): use new taxonRelationshipsDTO webservice for all taxon relations
- cleanup TODO copied to #9403 and now closing this ticket
- 02:38 PM bug #9403 (Closed): cleanup function cdm_related_taxon() from used paramerters and css class attributes
- 1.) remove unused parameters:
`$relsign = NULL, $reltype_representation = NULL, $doubtful=false, $doLinkTaxon = FA... - 02:11 PM Revision c27b3a19 (cdmlib): ref #9290 castTo method for TypedEntityReference
- 02:03 PM feature request #7417 (Closed): Make pro parte and partial synonym relationships always visible in data portals
- this is fully implemented and also covered by the tests on the synonymy of *Miconia cubacinerea* in the reference dat...
- 01:53 PM bug #7745 (Closed): Subtree filter for dataportal services
- 01:51 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> For the polytomous keys the following webservices need to be filtered by the subTree to ... - 01:51 PM task #9402 (New): Subtree filter for polytomousKey and polytomousKeyNode services
- For the polytomous keys the following webservices need to be filtered by the subTree to avoid unpublished taxa showin...
- 01:49 PM bug #7386 (Closed): TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a basionym
- 01:44 PM bug #9401 (New): Name bulk editor: focus gets lost when list loading is going on
- Allerdings habe ich ein Problem damit den Fokus im Bulkeditor dauerhaft auf einen Namen zu setzten. Solange der Bulke...
- 01:39 PM Revision d7d6bc83 (cdm-vaadin): ref #9290 making TypeDesignationWorkingsetEditorIdSet --> TypeDesignationWorkingsetIds more clear
- 01:38 PM bug #9290 (Resolved): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- Hi Henning, could you please make some tests in the test-server to make sure the changes are not causing problems wit...
- 01:32 PM Revision 0b71a670 (cdm-vaadin): ref #9290 making TypeDesignationWorkingsetEditorIdSet --> TypeDesignationWorkingsetIds more clear
- 12:43 PM Revision c63cad99 (cdmlib): fix #9391: fix test
- 12:39 PM bug #9373: In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- I can't reproduce this. When the titlecache is protected, the field is enabled and the button shows the open lock.
!... - 11:55 AM Revision eb2005b8 (cdmlib): ref 6308: check for namedeletion in taxonbase isDeletable and add warning if not deletable
- 11:54 AM feature request #6308 (Closed): Add configuration dialog for the deletion of synonyms in name editor
- Andreas Müller wrote:
> The 2 warnings do not show up anymore so we can close this ticket.
> However, I am a bit as... - 11:34 AM bug #9398 (In Progress): ObjectNotFoundException when removing a synonym that is used as NameInSource
- 11:33 AM bug #9398: ObjectNotFoundException when removing a synonym that is used as NameInSource
- I think the problem is that the name used as "name used in source" still have the information to be the name of the d...
- 11:03 AM Revision 4f7744bd (cdmlib): fix #9391: fix test
- 10:46 AM Revision c530ad2e (taxeditor): ref #9393: remove possibility to delete parent in newTaxon wizard
- 10:41 AM bug #9393 (Resolved): NPE when removing parent from TaxonNode editor
- The newTaxon wizard does not allow deleting the parent taxon anymore. To create a orphan taxon the user should use th...
- 10:25 AM Revision cc9c04a4 (cdm-vaadin): ref #9290 cleaning up
- 09:43 AM Revision 91e53109 (cdm-vaadin): ref #9290 SpecimenTypeDesignationEditor now using designation reference correctly
- 09:38 AM bug #9391: If named area level does not exist remove the level information
- please review
- 09:38 AM bug #9391 (Resolved): If named area level does not exist remove the level information
- Applied in changeset commit:cdmlib|6d7fe5d574d1264196441524f674c24732b248a0.
- 09:38 AM Revision 6d7fe5d5 (cdmlib): fix #9391: if no level exist remove class name in label with level in namedArea
- 08:39 AM task #9400 (New): Check whether it is possible to set rights to reduce the work to descriptive datasets
- mail NK:
Deshalb schon mal die Frage: Gibt es separate Rechte ausschließlich für Arbeit mit Descriptive Data Sets,...
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