Activity
From 12/30/2020 to 01/28/2021
01/28/2021
- 11:34 PM bug #9429: Taxon cache strategy handles sec details 2x in some cases
- please review
- 11:34 PM bug #9429 (Resolved): Taxon cache strategy handles sec details 2x in some cases
- Applied in changeset commit:cdmlib|b240a635d7826790ba39aed8c110edd1253a4d80.
- 11:32 PM bug #9429 (Closed): Taxon cache strategy handles sec details 2x in some cases
- If the secundum reference is atomized (no protected titleCache, authorships exists, datePublished exists) the sec det...
- 11:33 PM Revision b240a635 (cdmlib): fix #9429 fix duplicated sec-detail in taxon cachestrategy
- 11:33 PM Revision 3dd931cb (cdmlib): cleanup
- 10:07 PM Revision 76af2015 (taxeditor): ref #9351 fix cdmlib-print and -remote version in TaxEditor master
- 04:51 PM Revision 36c5a39d (taxeditor): remove duplicated result variable (from incorrect merge)
- 02:19 PM Revision 0e690fc1 (cdm-server): Merge branch 'release/5.19.0' into develop
- 02:18 PM Revision 84ac3ea0 (cdm-server): updating poms for branch'release/5.19.0' with non-snapshot versions
- 02:18 PM Revision 0f1d9fa9 (cdm-webapp): Merge branch 'release/5.19.0' into develop
- 02:17 PM Revision 5cad30aa (cdm-webapp): updating poms for branch'release/5.19.0' with non-snapshot versions
- 02:17 PM Revision f43b2c71 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.19.0
- 01:56 PM Revision b8d65652 (taxeditor): Merge branch 'release/5.19.0' into develop
- 01:56 PM Revision 0e8e733e (taxeditor): Merge branch 'release/5.19.0'
- 01:54 PM Revision b37d89b9 (cdm-vaadin): Merge branch 'release/5.19.0' into develop
- 01:54 PM Revision 11723a18 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 01:50 PM Revision 11aa3ae6 (cdm-vaadin): updating poms for branch'release/5.19.0' with non-snapshot versions
- 01:50 PM Revision eacc0936 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0
- 01:50 PM Revision 5ecb0d84 (cdm-dataportal): Merge branch 'release/5.19.0' into develop
- 01:50 PM Revision 9f68f082 (cdm-dataportal): updating poms for branch'release/5.19.0' with non-snapshot versions
- 01:49 PM Revision 6c6615a3 (cdm-dataportal): release-preparation: production level css
- 01:43 PM Revision af911bff (cdmlib): Updating develop poms back to pre merge state
- 01:43 PM Revision f504641d (cdmlib): Merge branch 'master' into develop
- 01:43 PM Revision 655339ef (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 01:43 PM Revision fcb1fc89 (cdmlib): Merge branch 'release/5.19.0'
- 01:22 PM Revision da6cb609 (cdmlib): updating poms for branch'release/5.19.0' with non-snapshot versions
- 01:14 PM Revision aca878a2 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.19.0-SNAPSHOT
- 01:14 PM Revision f2ec937e (cdm-webapp): updating poms for 5.20.0-SNAPSHOT development
- 01:14 PM Revision 001ffcb1 (cdm-webapp): updating poms for 5.19.0 branch with snapshot versions
- 01:14 PM Revision cac5e963 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.20.0-SNAPSHOT
- 01:12 PM Revision 08681bf7 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0-SNAPSHOT
- 01:12 PM Revision a8bc1677 (cdm-vaadin): updating poms for 5.20.0-SNAPSHOT development
- 01:12 PM Revision 1f3e51f7 (cdm-vaadin): updating poms for 5.19.0 branch with snapshot versions
- 01:12 PM Revision 969c79c4 (cdm-vaadin): jenkins bumping cdmlib.version to 5.20.0-SNAPSHOT
- 01:07 PM Revision 5c22df91 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0-SNAPSHOT
- 01:06 PM Revision 1fcc52c5 (cdm-vaadin): updating poms for 5.20.0-SNAPSHOT development
- 01:06 PM Revision 2b50690d (cdm-vaadin): updating poms for 5.19.0 branch with snapshot versions
- 01:06 PM Revision 329b8e35 (cdm-vaadin): jenkins bumping cdmlib.version to 5.20.0-SNAPSHOT
- 01:04 PM Revision 0cb31f28 (taxeditor): Updated version in pom / project files to taxeditor version : 5.20.0-SNAPSHOT and cdmlib version : 5.20.0-SNAPSHOT
- 01:04 PM Revision c5eccbb4 (taxeditor): Updated version in pom / project files to taxeditor version : 5.19.0 and cdmlib version : 5.19.0
- 12:59 PM Revision c5df7948 (cdmlib): updating poms for 5.20.0-SNAPSHOT development
- 12:16 PM feature request #9428 (New): Asynchronous loading of terms
- copied from #9422, see there for more details:
An even better solution (maybe for the future/another ticket) could... - 12:11 PM feature request #9427 (Closed): Code cleaning in CdmPreferenceCache
- copied from #9422:
for CdmPreferenceCache.getAllTaxEditorDBPreferences() the code
~~~ java
PrefKey k... - 11:55 AM bug #9422 (Closed): Improve performance during Preferences startup
- yes, the first fix (term loading at start) is fixed for 5.19. So I create a new ticket for the remaining issues and c...
- 11:51 AM bug #9422 (Feedback): Improve performance during Preferences startup
- The first fix went into 5.19, correct?
So I think we should split the ticket and set this one to resolved? - 11:40 AM bug #9426 (Closed): Set publish flag for Synonyms in accordance with accepted taxon publish flag
- If a new synonym is added to an accepted taxon the publish flag should get the same value as the accepted taxon to av...
- 11:26 AM bug #9425: Common Names handling in CdmLight
- By the way the same should be done for distributions.
- 11:25 AM bug #9425: Common Names handling in CdmLight
- As I guess that this is a no brainer I put it to the current milestone.
- 11:06 AM bug #9425 (New): Common Names handling in CdmLight
- The feature CommonName allows descriptionElements of type TextData this is not handled in cdmLight.
We need to di...
01/27/2021
- 04:52 PM feature request #9338 (Closed): Restructure term menus
- I did not check again but I guess we can close this ticket.
- 04:51 PM bug #5710 (In Progress): Changing the database connection must reset all caches
- 03:25 PM Revision 05d3d1a8 (cdmlib): Updating develop poms back to pre merge state
- 03:25 PM Revision 6c128ca6 (cdmlib): Merge branch 'master' into develop
- 03:25 PM Revision e18bdb59 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 03:25 PM Revision c9a0ff54 (cdmlib): Merge branch 'release/5.18.0'
- 03:21 PM feature request #7704 (Closed): Dataportal specimen table should be able to show DerivedUnits without a FieldUnit
- 03:21 PM bug #9397 (Closed): Derivate tree view must show DerivedUnits even if the FieldUnit is missing
- 03:04 PM Revision 5f9032c7 (cdmlib): updating poms for branch'release/5.18.0' with non-snapshot versions
- 02:44 PM Revision 4e6fc4ae (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.20.0-SNAPSHOT
- 02:40 PM Revision 4abafde1 (taxeditor): Updated version in pom / project files to taxeditor version : 5.18.0 and cdmlib version : 5.18.0
- 02:40 PM Revision 4d3c9273 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0-SNAPSHOT
- 02:40 PM Revision 0d5ac911 (cdm-vaadin): jenkins bumping cdmlib.version to 5.20.0-SNAPSHOT
- 02:34 PM Revision de4be7b3 (cdm-dataportal): updating poms for 5.20.0-SNAPSHOT development
- 02:34 PM Revision 0d05d17e (cdm-server): updating poms for 5.20.0-SNAPSHOT development
- 01:10 PM bug #9360: Parsed hybrids can not be persisted
- Katja Luther wrote:
> Concepts with hybrid names are already handled correctly, because the list toSaveNewConcepts c... - 12:12 PM bug #9360: Parsed hybrids can not be persisted
- Concepts with hybrid names are already handled correctly, because the list toSaveNewConcepts contains all concepts, I...
- 01:03 PM Revision b2217f44 (cdm-dataportal): ref #9395 adapting test to modified service method
- 01:02 PM Revision 021cc0fe (cdmlib): ref #9395 solving problem in derivation-dto-graph assembly (replaced field units)
- 11:52 AM bug #7141 (Worksforme): Navigator does not update after swap synonym and accepted
- This is fixed in the meantime.
- 11:31 AM bug #9140 (Resolved): Deleting an image forgets moving operation
- this seems to be fixed with #7711
- 11:28 AM bug #9012 (Worksforme): Taxon Navigator does not refresh after moving a taxon between classifications
- This seems to be fixed in the meantime, therefore set to works for me.
- 11:20 AM Revision 5e0162fb (cdmlib): ref #7599 ref #9395 documenting requirements
- 09:28 AM bug #9346 (Resolved): Adding specimen to character matrix fails sometimes
- This is fixed.
- 09:16 AM Revision 7361927a (taxeditor): ref #9360: code cleaning
- 09:15 AM feature request #7975 (Closed): Implement a block to display name relations
- 09:14 AM task #9165: Eroneous registrations, published
- Wolf-Henning Kusber wrote:
> Das grundsätzliche Problem bleibt, dass sich registrierte Namen und Typen nach Publikat... - 12:04 AM Revision c1f1372f (taxeditor): fix #9360: fix saving of synonyms being hybrid formulas, some potential NPEs and some cleanup of commented code
01/26/2021
- 11:08 PM Revision 2085813d (taxeditor): cleanup
- 04:36 PM Revision f8decba5 (taxeditor): fix #9360: add parsed hybrid names to newly created names while merge taxonnameEditorInput
- 04:35 PM bug #9360 (Resolved): Parsed hybrids can not be persisted
- Applied in changeset commit:taxeditor|f8decba5d7a4bc8ec562b380190b1534a31c069a.
- 12:24 PM bug #9360: Parsed hybrids can not be persisted
- Probably the reason is that in TaxEditorInputE4.merge() only the hybrid parents for *new* parents are pre-saved. But ...
- 09:10 AM bug #9360: Parsed hybrids can not be persisted
- A similar issue in test DB
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/t... - 02:51 PM Revision 303a8ebc (cdm-vaadin): ref #9290 limiting designation sources to the publication unit and sub sections in NameTypeDesignationEditor
- 02:51 PM bug #9290 (In Progress): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- 02:25 PM bug #9405 (Closed): Fields set to irrelevant for cache should be set by state only
- This seems to work correctly (also for references), I only added the colouring of the date field for references to #9...
- 02:16 PM Revision 7e1a46e1 (cdm-vaadin): ref #9301 limiting designation sources to the publication unit and sub sections
- 02:15 PM Revision ff00d7e8 (cdmlib): ref #9301 static helper method to find the nom. act of a registration
- 02:13 PM feature request #9301 (In Progress): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- 01:58 PM feature request #9338 (Resolved): Restructure term menus
- Andreas Müller wrote:
> I found some further issues:
>
> * Namerelationshiptype tree editor opens taxon relations... - 01:12 PM feature request #9338: Restructure term menus
- translation works now as expected
- 12:57 PM feature request #9338 (Feedback): Restructure term menus
- I found some further issues:
* Namerelationshiptype tree editor opens taxon relationship trees and the other way r... - 01:58 PM Revision da31b745 (taxeditor): check all termeditors and termtree editors to be connected to the correct term type
- 01:22 PM bug #9369 (Closed): Reference Detail is missing in MediaSpecimen details view
- 01:05 PM Revision b8182374 (cdm-dataportal): ref #9397 supressing derivationTreeSummary in derivate tree
- 12:48 PM bug #7711: Bugs in media gallery
- This should be finally closed only when #9360 is also fixed as the code seems to be related and it needs to be tested...
- 11:12 AM bug #7711 (Resolved): Bugs in media gallery
- 11:09 AM bug #7711: Bugs in media gallery
- Andreas Müller wrote:
> The image issue seems to be fixed.
>
> There is still one new commented line:
>
> // ... - 10:08 AM bug #7711 (Feedback): Bugs in media gallery
- The image issue seems to be fixed.
There is still one new commented line:
// descriptio... - 12:43 PM bug #9149 (Duplicate): NPE when saving hybrid formula
- 12:40 PM bug #9422 (In Progress): Improve performance during Preferences startup
- Now the method to get dtos from serverside is used instead of getting the terms and create dtos on editor side.
- 12:39 PM Revision f8326308 (taxeditor): ref #9422: get termDtos from server
- 12:38 PM Revision c5c00803 (cdmlib): ref #9395 simplifying findByGeneticAccessionNumber() as extra code has no imact on performance
- 12:34 PM Revision 8195f008 (cdmlib): ref #9395 findByAccessionNumber() -> findByGeneticAccessionNumber(), preserving old method as deprecated
- 12:33 PM Revision e793ebfb (cdmlib): cleanup
- 12:31 PM task #9165: Eroneous registrations, published
- Das grundsätzliche Problem bleibt, dass sich registrierte Namen und Typen nach Publikation online/in Print Medien und...
- 12:18 PM bug #9395 (Resolved): DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
- 12:12 PM bug #9395 (In Progress): DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
- 12:16 PM Revision 2edb5aa1 (cdmlib): ref #9395 fully implementing maxDepth for derivative assembly and fixing OccurrenceServiceImpl._findRootUnitDTO()
- 11:52 AM feature request #7975 (Worksforme): Implement a block to display name relations
- can be closed
- 11:43 AM Revision f5792d50 (cdmlib): cleanup
- 11:30 AM Revision 39816367 (taxeditor): add taxon relations to propertypath of taxonbase
- 11:28 AM bug #9419: Typespecimen display in Vaadin when two designations having different field units are related to one name in one publication
- display in the dataportal is correct:
* http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name... - 11:13 AM Revision d5b342dc (taxeditor): ref #7711: adapt merge in TaxonEditorInputE4 to avoid exceptions for namerelations
- 10:54 AM Revision 2d263962 (taxeditor): avoid widgetIsDisposed exception
- 10:30 AM Revision a3b7c1e7 (taxeditor): create DerivedUnit of type TissueSample for tissueSamples instead of DNASample
- 09:59 AM Revision 13754873 (cdmlib): ref #9360 preliminary exception for debugging NPE
- 09:16 AM Revision ec8279f2 (taxeditor): cleanup
- 08:18 AM Revision f047dbf9 (cdm-dataportal): ref #9397 supressing summaryLabel in derivate tree
- 06:02 AM bug #9424: CdmImageInfo connection timeout implemented
- the missing timeout currently causes problems that let the dataportal tests fail
- 06:01 AM bug #9424 (New): CdmImageInfo connection timeout implemented
- the time out passed to the method `.CdmImageInfo.readMetaData(Integer timeOut) ` is never being used.
the timeout ...
01/25/2021
- 08:44 PM Revision 9280750d (taxeditor): cleaning up eclipse editor mess
- 08:32 PM Revision 18d0f149 (taxeditor): adapting editor to modified DTO property
- 08:17 PM Revision 2c559f97 (cdm-dataportal): fix #7704 fix #9397 adapting specimen tree and table view to cdmlib improvements for complete root unit display - adapting tests
- 07:49 PM Revision f6740b16 (cdmlib): ref #9389 ref #9415 improving information assembly in derivation bouquet by recursion - adapting test
- 07:26 PM bug #9397 (Resolved): Derivate tree view must show DerivedUnits even if the FieldUnit is missing
- Applied in changeset commit:cdm-dataportal|9783f0849a4b549f3b1513211011f4eb16c01eac.
- 07:26 PM feature request #7704 (Resolved): Dataportal specimen table should be able to show DerivedUnits without a FieldUnit
- Applied in changeset commit:cdm-dataportal|9783f0849a4b549f3b1513211011f4eb16c01eac.
- 07:26 PM Revision 9783f084 (cdm-dataportal): fix #7704 fix #9397 adapting specimen tree and table view to cdmlib improvements for complete root unit display
- 07:23 PM task #9253 (Resolved): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- possibly solved now
- 07:22 PM bug #8423 (Closed): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- works as expected
- 07:15 PM bug #9415 (Closed): DNA and other Derivatives missing in DerivedUnitDTO
- 07:12 PM bug #9415 (Resolved): DNA and other Derivatives missing in DerivedUnitDTO
- 07:15 PM bug #9395 (Closed): DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
- completed
- 07:13 PM task #9389 (In Progress): further improvement and revision of derivative filtering by type and DerivedUnitDTO
- problem 2.) solved
- 07:12 PM Revision 1d8a4f7e (cdmlib): ref #9389 ref #9415 improving information assembly in derivation bouquet by recursion, fixing multiple problems
- 06:00 PM bug #9423 (New): Improve language handling for TermType.getMessage() and others
- TermType.getMessage() is often used when creating menus but also in other context. It internally calls TermType.getMe...
- 05:26 PM bug #9422 (Closed): Improve performance during Preferences startup
- During startup the following function is called
CdmPreferenceCache.getAllTaxEditorDBPreferences by PreferenceUtil... - 04:48 PM Revision 4e1d9174 (taxeditor): ref #9369: add space between several fields in mediaspecimen details
- 04:47 PM bug #9369 (Resolved): Reference Detail is missing in MediaSpecimen details view
- Spaces are added, please have a look
- 04:20 PM bug #9369 (Feedback): Reference Detail is missing in MediaSpecimen details view
- Katja Luther wrote:
> move this ticket to 5.20 because moving the uri needs some more implementation.
Moving URI ... - 04:10 PM bug #9369 (In Progress): Reference Detail is missing in MediaSpecimen details view
- move this ticket to 5.20 because moving the uri needs some more implementation.
- 04:19 PM bug #9350 (Closed): Create new taxonnode ignores the publish flag
- 04:18 PM bug #9350: Create new taxonnode ignores the publish flag
- Andreas Müller wrote:
> Works as expeccted.
>
> Should we check after the release that the code merge worked corr... - 04:17 PM task #9421 (New): [Discuss] Move URI to top in MediaSpecimen
- copied from #9369
- 04:03 PM feature request #9420 (New): Harmonize Update- and ImportResult
- Actually the import result only contains counts of imported and updated objects, for better updating mechanisms it wo...
- 04:03 PM bug #8874 (Resolved): move taxon is reverted when taxon is edited afterwards
- I want to check again what I meant therefore I put it back to review to remind myself to do so.
- 04:01 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- Andreas Müller wrote:
> Katja Luther wrote:
> > Maybe we should think about a more detailed ImportResult, but there... - 03:59 PM bug #8874 (Closed): move taxon is reverted when taxon is edited afterwards
- 03:47 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- Andreas Müller wrote:
> It seems to work. However, I do not fully understand, why. Don't the changes try to guarante... - 10:29 AM bug #8874: move taxon is reverted when taxon is edited afterwards
- Katja Luther wrote:
> Maybe we should think about a more detailed ImportResult, but therefore we need to implement i... - 10:28 AM bug #8874: move taxon is reverted when taxon is edited afterwards
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > I also wonder, why in the code only th... - 10:22 AM bug #8874: move taxon is reverted when taxon is edited afterwards
- Katja Luther wrote:
> Andreas Müller wrote:
> > I also wonder, why in the code only the UpdateResult part was adapt... - 09:43 AM bug #8874: move taxon is reverted when taxon is edited afterwards
- Andreas Müller wrote:
> I also wonder, why in the code only the UpdateResult part was adapted, but not the ImportRes... - 09:39 AM bug #8874: move taxon is reverted when taxon is edited afterwards
- Andreas Müller wrote:
> Another more critical issue related to the code reviewed:
>
> The following code:
>
> ... - 03:40 PM Revision d9837e21 (taxeditor): fix #7711: fix delete of media if another not persisted media exist
- 03:39 PM bug #7711: Bugs in media gallery
- Andreas Müller wrote:
> >if a transient (id>0) media is removed all volatile (id=0) media are also removed automatic... - 03:39 PM bug #7711 (Resolved): Bugs in media gallery
- Applied in changeset commit:taxeditor|d9837e213c6caef559688ebaaac5a86f3fe31cb0.
- 02:25 PM Revision c3b6d097 (taxeditor): ref #9405 , ref #4944 fix NPE in CacheRelevanceHelper
- 01:23 PM Revision 6fd05c62 (taxeditor): ref #9338: adapt translations in term menues - Status -> Kategorie
- 11:31 AM Revision 3c8dd48a (taxeditor): ref #9338: adapt translations in term menues - fix typo
- 11:28 AM feature request #9338 (Resolved): Restructure term menus
- The german labels are adapted, please have a look whether everything is ok now.
- 11:26 AM Revision c83d1ee7 (cdmlib): avoid NotSerializableException for SourceDto
- 11:22 AM Revision 2c763ca6 (taxeditor): ref #9338: adapt translations in term menues
- 11:19 AM Revision b1a9da41 (taxeditor): code cleaning
- 11:18 AM bug #9419 (New): Typespecimen display in Vaadin when two designations having different field units are related to one name in one publication
- Test System as of 25 JAn 2021:
Typespecimen display in Vaadin is not correct when two designations are related to on... - 11:03 AM Revision fa5e785a (taxeditor): avoid NPE for newly created TermTree
- 09:29 AM bug #9353: Copy & Paste creates dirty data in term trees
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Paste requires save first. Is this really needed? Most task are n... - 09:28 AM bug #9353 (Closed): Copy & Paste creates dirty data in term trees
- 09:27 AM bug #9354 (Closed): Sorting in distribution editor is broken
- The code looks fine. Close the ticket.
- 09:25 AM bug #9365 (Closed): Reuse taxon does not work in new Taxon dialogue
- the looks fine, close the ticket.
- 09:11 AM feature request #9418 (New): Improve entering of date published
- Normally the date element is collapsed in the editor and the users forget to enter the publishing date of a reference...
- 08:20 AM feature request #8756: Refresh button for structure tree and property tree in Character Editor
- is it planned that the refresh also can be triggered by pressing the `F5` key?
01/24/2021
- 03:42 PM feature request #9404: Open issues for Tropicos Import
- Chuck;
Here’s the answer from Paul. We don’t plan to change the output. Web service will come later on after we ha...
01/23/2021
- 02:46 AM bug #9360: Parsed hybrids can not be persisted
- maybe a duplicate for #9149
- 02:45 AM bug #9360 (In Progress): Parsed hybrids can not be persisted
- 02:39 AM bug #9405: Fields set to irrelevant for cache should be set by state only
- The general idea of the refactoring is:
* in a first step all elements which are relevant for a cache get do regis... - 02:23 AM bug #9405 (Resolved): Fields set to irrelevant for cache should be set by state only
- This should be fixed. I moved advanced issues to new ticket #9417. Please review.
This is also related to #4944. P... - 02:19 AM bug #9405: Fields set to irrelevant for cache should be set by state only
- This is mostly fixed. Some advanced features stay:
* trigger updateCacheRelevance() with ToggledText state change ... - 02:29 AM bug #4915: Abbrev title for person should never be orange
- This should also be fully fixed with #9405 being implemented. Please review again as the frameworks has been fully re...
- 02:25 AM bug #4944: "Protected" indication for references needs to be improved
- with implementation of #9405 this should be fully fixed now. Please review with new implementation.
>The following... - 02:21 AM feature request #9417 (New): Advanced issues for cache relevance handling
- This is mostly fixed. Some advanced features stay:
* trigger updateCacheRelevance() with ToggledText state change ... - 02:08 AM Revision 202edbff (taxeditor): ref #9405 , ref #4944 refactor the cache protection indication handling in TaxEditor details view elements
- 02:00 AM Revision 2a4c2da5 (taxeditor): handle inReferences genericly with ReferenceType.inReferenceContraints
- 01:55 AM Revision aeb80bf1 (taxeditor): cleanup
01/22/2021
- 08:24 PM Revision afb8223a (taxeditor): cleanup
- 07:38 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- Published Specimen Types which are holotypes are displayed as "designated by" in Vaadin. For new names this is now im...
- 07:23 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- Selection disabled/enabled in SpecimenTypeDesignationEditor see #9301
Selection disabled/enabled in NameTypeDesignat... - 07:10 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- re-labeled to "Designation reference": perfect
function is there but not user-friendly
Only the references in u... - 07:18 PM feature request #9301: SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- The fields are shown, if needed.
The selection of type status (all checked) in SpecimenTypDesignationEditor is fin... - 05:07 PM Revision d09b9168 (taxeditor): ref #9338: adapt term menu
- 04:32 PM Revision 6fa29b1d (cdmlib): cleanup
- 04:32 PM Revision 0b2155a2 (cdmlib): ref #9365 update code for reuse taxon (change order for check name and check taxon and throw exceptions if not exists)
- 04:31 PM feature request #8554 (Duplicate): Allow drag&drop from character into FeatureTrees
- 04:26 PM bug #9365 (Feedback): Reuse taxon does not work in new Taxon dialogue
- I changed it a bit the way that first it is checked if a taxon is reused, if not a new taxon is created (with accordi...
- 09:12 AM bug #9365 (Resolved): Reuse taxon does not work in new Taxon dialogue
- Andreas Müller wrote:
> Andreas Müller wrote:
> > As you are now using a different method for createNewTaxonNode al... - 04:08 PM Revision fb33c0e3 (cdmlib): cleanup
- 03:52 PM bug #9372 (Closed): in media details view unprotected title cache is not updated when underlying data is changed
- 11:25 AM bug #9372: in media details view unprotected title cache is not updated when underlying data is changed
- this is fixed now, please review.
- 03:47 PM bug #9412 (Closed): Fix reuse existing name in NewTaxonWizard
- 09:40 AM bug #9412 (Resolved): Fix reuse existing name in NewTaxonWizard
- please review.
- 09:33 AM bug #9412 (Closed): Fix reuse existing name in NewTaxonWizard
- I got a very similar NPE when deleting the "reuse existing name":
~~~
last remote method : http://test.e-taxono... - 03:45 PM bug #9353 (Feedback): Copy & Paste creates dirty data in term trees
- Andreas Müller wrote:
> Paste requires save first. Is this really needed? Most task are now handled without save-req... - 09:50 AM bug #9353 (Resolved): Copy & Paste creates dirty data in term trees
- Duplicates can be copied now (for trees allowing duplicates)
The problem of two error dialogs I could not reproduce. - 03:35 PM feature request #9338: Restructure term menus
- Some translations are missing.
Easy: Language, Extension-Type
Maybe also possible: Stage, Nametypedesignation S... - 03:28 PM feature request #9338 (Feedback): Restructure term menus
- There is another issue for trees:
Dna Marker is duplicated, the first is wrong. At the s... - 11:59 AM feature request #9338 (Resolved): Restructure term menus
- Adapted the menues, please have a look.
- 03:10 PM bug #9354 (Feedback): Sorting in distribution editor is broken
- Works as expected. We only could do some further improvements which I put in a new ticket #9416.
Please review my ... - 02:10 PM bug #9354: Sorting in distribution editor is broken
- I unified the 2 TaxonNodeDao.listChildrenOf(...) methods as I don't think it is good to have recursion input paramete...
- 11:37 AM bug #9354: Sorting in distribution editor is broken
- Andreas Müller wrote:
> There is an NPE issue in TaxonNodeByRankAndNameComparator if name or rank does not exist in ... - 11:36 AM bug #9354: Sorting in distribution editor is broken
- There is an NPE issue in TaxonNodeByRankAndNameComparator if name or rank does not exist in taxon. I fixed it.
- 03:10 PM feature request #4298 (New): refresh views after changing rights
- As the description is hopefully clear now we can put this back to "New" to avoid having it in the feedback tickets al...
- 03:03 PM task #9416 (New): Improve distribution editor sort methods
- Currently in TaxonNode.listChildrenOfRecursive 2 different implementations are used to compute the result (first is u...
- 02:53 PM Revision 89ce56b3 (cdmlib): make comparators of TaxonNodeXxxSortMode singletons
- 02:47 PM Revision 1ed16f10 (cdmlib): cleanup
- 02:15 PM Revision aa8a8f74 (taxeditor): adapt Editor to moved TaxonNodeSortMode
- 01:52 PM Revision 49e5a25a (cdmlib): ref #9354 unify TaxonNodeDao.listChildrenOf(...) methods (fix test)
- 01:27 PM Revision 1c63b6c5 (cdmlib): ref #9354 unify TaxonNodeDao.listChildrenOf(...) methods
- 01:27 PM Revision 65112c51 (cdmlib): move TaxonNodeSortMode to model.compare
- 01:27 PM Revision 97118446 (cdmlib): cleanup
- 12:20 PM bug #9413 (Closed): DNA details lable "Ratio of absorbance ..." corrected
- Fixed.
By the way, such label adaptations should always go into the current milestone (as they are extremely easy ... - 12:17 PM bug #9413 (Resolved): DNA details lable "Ratio of absorbance ..." corrected
- Applied in changeset commit:taxeditor|ad2d549777a2629b3ff79f663792dcc644df9f55.
- 09:38 AM bug #9413 (Closed): DNA details lable "Ratio of absorbance ..." corrected
- these two labels denote the ratio of two wavelengths therefore the numbers must be concatenated with a slash
* "R... - 12:19 PM feature request #4867 (In Progress): Add menu item for subtree cloning
- 12:17 PM Revision ad2d5497 (taxeditor): fix #9413 fix separator for absorbance ratio
- 12:16 PM Revision c955d553 (taxeditor): ref #9142: code cleaning
- 12:16 PM bug #9142 (Closed): The Agent search dialog shows duplicated entries
- cleaned the code and close ticket.
- 12:00 PM Revision 0b1cfd87 (taxeditor): ref #9338: some adaptions in menues
- 12:00 PM feature request #9192 (Closed): Layout issues for source in taxonnode details
- 11:58 AM Revision f5d64be9 (taxeditor): ref #9264: rename linkWithTaxon parameter
- 11:56 AM bug #9264 (Closed): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- Renamed parameter and close this ticket.
- 11:56 AM Revision d7a609e3 (cdmlib): ref #9276 renaming DerivationTreeSummaryDTO fields in SpecimenOrObservationBaseDTO
- 11:56 AM Revision 1e436a0b (cdmlib): ref #9276 documenting DerivateDataDTO and renaming to DerivationTreeSummaryDTO
- 11:56 AM Revision 408979d3 (taxeditor): ref #9395 adapting services and web-services to return all root units - adapting taxeditor - generic type fix
- 11:53 AM Revision a7dcea2c (cdm-dataportal): ref #9276 adapting portal to renamed DerivationTreeSummaryDTO fields in SpecimenOrObservationBaseDTO
- 11:46 AM Revision 25b933c4 (cdm-dataportal): ref #7704, ref #9395 using web-services now returning all root units
- 11:33 AM Revision 3f7808ea (cdmlib): try to fix TaxoNodeByNameComparator issue in application context files.
- 11:25 AM Revision cf3b8a2b (taxeditor): adapt comparators to new model.compare structure (cont.)
- 11:25 AM Revision 5dbff5a2 (taxeditor): ref #9372: adapt title after changing uri of media
- 11:16 AM Revision b26f84c2 (cdmlib): fix compile error and rename TaxonNodeNaturalComparator
- 11:07 AM Revision eb1471a5 (cdmlib): moving further Comparators to model.compare
- 11:07 AM Revision 9bae7299 (cdmlib): cleanup
- 11:07 AM Revision 6502eaa6 (cdmlib): ref #9354 fix NPE in TaxonNodeByRankAndNameComparator
- 10:53 AM Revision 70e9fc0d (taxeditor): ref #9395 adapting services and web-services to return all root units - adapting taxeditor
- 10:52 AM Revision 9fcfd180 (cdmlib): ref #9395 adapting services and web-services to return all root units
- 10:27 AM Revision 35fb70b7 (taxeditor): fix compile error and cleanup
- 10:19 AM Revision 5330bd70 (cdm-vaadin): adapt comparators to new model.compare structure
- 10:05 AM Revision af95d1c1 (taxeditor): adapt comparators to new model.compare structure and some cleanup
- 10:02 AM Revision bc39bc21 (cdmlib): move some comparators to model.compare package, add subpackages to model.compare and some cleanup
- 10:00 AM bug #9415 (Closed): DNA and other Derivatives missing in DerivedUnitDTO
- example:
http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/occurrence/8259122c-7140-44f3-980e-1a65... - 09:47 AM Revision e12ba935 (taxeditor): ref #9353: fix check for duplicates when duplicates allowed
- 09:42 AM bug #9414 (New): DNA details lable "Concentration" with unit
- these labels "Concentration" should include the unit:
"Concentration [ng/μl]"
- 09:37 AM bug #9393: NPE when removing parent from TaxonNode editor
- splitted the ticket: ticket #9412 handles the exception when reusing a name and this ticket the NPE when removing a p...
- 09:14 AM bug #9356 (Closed): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- Andreas Müller wrote:
> For TypeDesignationComparator the line
>
> ~~~
> return o1.getUuid().compareTo(o2.getUui... - 08:39 AM Revision fc69fc31 (cdmlib): implement Comparator contract for TypedEntityComparator.java correctly
01/21/2021
- 08:42 PM Revision a3fe9a5a (taxeditor): cleanup
- 08:35 PM Revision 56613858 (taxeditor): ref #9356 clean up SourceComparator
- 08:35 PM Revision 35fb8b4d (taxeditor): cleanup
- 08:16 PM bug #9356: Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- The SourceComparator looks fine. I only cleaned it up a bit.
- 07:34 PM bug #9356 (Feedback): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- For TypeDesignationComparator the line
~~~
return o1.getUuid().compareTo(o2.getUuid());
~~~
will never be rea... - 07:41 PM Revision 0287cfe2 (cdmlib): fix compile error
- 07:26 PM Revision a407a44c (cdmlib): improve generics for AgentService.getUuidAndAbbrevTitleCache
- 07:25 PM Revision a5502a9b (cdmlib): cleanup
- 07:23 PM Revision 9c187406 (cdmlib): ref #9356 adapt TypeDesignationComparator to fix case when both type status are null ; and cleanup null compare part above
- 06:44 PM bug #9353: Copy & Paste creates dirty data in term trees
- In general the copy&past works now.
- 06:43 PM bug #9353 (Feedback): Copy & Paste creates dirty data in term trees
- Paste requires save first. Is this really needed? Most task are now handled without save-requirement so it breaks a b...
- 06:36 PM bug #9353: Copy & Paste creates dirty data in term trees
- Andreas Müller wrote:
> There is a duplicate error message when c%p a duplicate term to a non-duplicate allowing tre... - 06:35 PM bug #9353: Copy & Paste creates dirty data in term trees
- The error message on duplicate also appears if the tree allows duplicates:
 - 06:31 PM bug #9353: Copy & Paste creates dirty data in term trees
- There is a duplicate error message when c%p a duplicate term to a non-duplicate allowing tree.
: call merged createTaxon method
- 05:40 PM Revision b09fb3b9 (cdmlib): cleanup and improve generics
- 05:33 PM Revision 94241b1b (taxeditor): fix create taxon with reused taxon
- 05:31 PM Revision ca23ea19 (cdmlib): fix delete taxon/name and merge createTaxon methods - continue
- 04:13 PM Revision 29d1e817 (cdmlib): cleanup
- 04:13 PM Revision 3133b77d (cdmlib): ref #9142 code simplification
- 04:02 PM feature request #8289 (Closed): Add "Open in RefObj view" to term editor context menu
- Looks good now.
- 02:34 PM feature request #8289 (Resolved): Add "Open in RefObj view" to term editor context menu
- Applied in changeset commit:taxeditor|9d09fe70f4a9159120f70754988dad2cf500365e.
- 02:04 PM feature request #8289 (Feedback): Add "Open in RefObj view" to term editor context menu
- Works as expected. Only issue: in other places we have the open in menu just below the New menu and also it is separa...
- 04:00 PM bug #8874 (Feedback): move taxon is reverted when taxon is edited afterwards
- Another more critical issue related to the code reviewed:
The following code:
~~~
for (Map.Entry<String, Integ... - 03:58 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- I also wonder, why in the code only the UpdateResult part was adapted, but not the ImportResult. Is this specific to ...
- 03:55 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- It seems to work. However, I do not fully understand, why. Don't the changes try to guarantee that all open taxa rela...
- 03:35 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- I think I remember the mail discussion about this issue. There, we discussed that this happens only if the taxon was ...
- 03:48 PM Revision 3e89c139 (taxeditor): cleanup
- 03:31 PM Revision 5f44e659 (cdmlib): ref #9301 extending init-strategy to include typeDesignation.source.*
- 03:28 PM task #9411 (New): use termtrees for user defined limited term lists
- this accounts for:
* nomenclatural status type terms
* ...
see `RegistrationTermLists` & an attempt to rep... - 03:22 PM bug #9344 (Closed): Datasets in Descriptive Dataset Navigator should be ordered
- looks fine
- 03:20 PM bug #7711: Bugs in media gallery
- >if a transient (id>0) media is removed all volatile (id=0) media are also removed automatically
this still happen... - 03:16 PM bug #7711 (Feedback): Bugs in media gallery
- When removing the last image of the image gallery I got:
~~~
last remote method : http://test.e-taxonomy.eu:80/cd... - 03:14 PM feature request #8981: Improve NameStatus in UI
- please review
- 03:14 PM feature request #8981 (Resolved): Improve NameStatus in UI
- Applied in changeset commit:cdm-vaadin|86550c96c1fc9e574e8dc8a9c4ae6289a47f2bd5.
- 03:14 PM Revision 86550c96 (cdm-vaadin): fix #8981 checkbox to toggle the name status tabel in-/visible
- 02:40 PM Revision c113bc55 (cdmlib): merge the two create taxon methods
- 02:39 PM Revision 6730fb60 (cdmlib): fix isDeletable for taxon with name used only once
- 02:34 PM Revision 9d09fe70 (taxeditor): fix #8289: add sep and move command
- 02:29 PM feature request #8975: Name Status filtered in UI
- ready for review
- 02:27 PM feature request #8975 (Resolved): Name Status filtered in UI
- Applied in changeset commit:cdm-vaadin|d8791ff266ee1c66cdb6a0d20a57844107435294.
- 02:27 PM Revision d8791ff2 (cdm-vaadin): fix #8975 limiting available nom status types
- 02:05 PM bug #8522: Make type status mandatory in Name type designation editor
- please review
- 02:04 PM bug #8522 (Resolved): Make type status mandatory in Name type designation editor
- Applied in changeset commit:cdm-vaadin|b892b7623a4a49d8a4e7669405b3dbe6e2dcca11.
- 02:04 PM Revision b892b762 (cdm-vaadin): fix #8522 type status mandatory in Name type designation editor
- 01:58 PM bug #9372: in media details view unprotected title cache is not updated when underlying data is changed
- It still does not seem to work. Now, even the title in the bulk editor table does not change anymore.
Do we talk a... - 01:43 PM bug #9264 (Feedback): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- seems to work.
Is the parameter boolean isLinkWithTaxon really needed? it is not used. Is it only to have any para... - 01:07 PM bug #9410 (New): DNA Marker is not shown correctly on specimen page
- instead it shows only "Object":
Example: http://portal.cybertaxonomy.org/algaterra-new/cd... - 01:02 PM bug #9365 (Feedback): Reuse taxon does not work in new Taxon dialogue
- Andreas Müller wrote:
> As you are now using a different method for createNewTaxonNode all the TaxonNode data like s... - 12:22 PM bug #9365 (Resolved): Reuse taxon does not work in new Taxon dialogue
- please review.
- 11:53 AM bug #9365: Reuse taxon does not work in new Taxon dialogue
- This is fixed with the last commit for #9393
- 11:49 AM bug #9365: Reuse taxon does not work in new Taxon dialogue
- As you are now using a different method for createNewTaxonNode all the TaxonNode data like source and status are not ...
- 11:38 AM bug #9365 (Feedback): Reuse taxon does not work in new Taxon dialogue
- The disabling of the secundum is still missing.
- 12:58 PM feature request #9338: Restructure term menus
- I moved questions on unhandled term types to new ticket #9409
- 12:52 PM feature request #9338 (Feedback): Restructure term menus
- 12:51 PM feature request #9338: Restructure term menus
- The new menu looks much better now (also mentioned by AK recently). Good we changed this.
- 12:49 PM feature request #9338: Restructure term menus
- And a small change to my above description: can we put Modifier and Scope into 1 section followed by another section ...
- 12:47 PM feature request #9338: Restructure term menus
- TaxonNodeAgentRelationType should be also editable for vocabularies (sorry, my comment was maybe not clear)
Langua... - 12:57 PM feature request #9409 (New): [Decision] Which terms should be editable in term tree editor (and vocabulary editor)
- copied from #9338
Open term types:
DerivationEventType (not in use yet?) => if to use last section
DnaQualityT... - 12:52 PM feature request #9301: SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- improvements to the layout will be done in #9408
The requested fields are now added and can be tested. - 12:45 PM feature request #9301 (Resolved): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- Applied in changeset commit:cdm-vaadin|06db1b37a7f659fb7e18079700103f41b16bfd10.
- 12:51 PM feature request #9408 (New): SpecimenTypeDesignation collection editor with grid-form per item instead of looong rows
- The SpecimenTypeDesignation collection editor the SpecimenTypeDesgnationEditor shows all fields in a very long row.
... - 12:45 PM Revision 06db1b37 (cdm-vaadin): fix #9301 adding designationReference and detail to specimen type designation editor
- 12:30 PM bug #9393: NPE when removing parent from TaxonNode editor
- Shouldn't we split the ticket? This ticket is mostly on NPEs not on general problems with parent handling.
- 12:20 PM bug #9393 (In Progress): NPE when removing parent from TaxonNode editor
- The NPE when removing reused name is fixed. The problem when removing parent is a little more difficult, therefore th...
- 10:23 AM bug #9393: NPE when removing parent from TaxonNode editor
- These are different issues but very related to the given issue therefore I mention it here. If difficult to fix feel ...
- 10:17 AM bug #9393: NPE when removing parent from TaxonNode editor
- When opening the NodeEditor from classification the parent field is still empty. When selecting a parent the Labels a...
- 10:15 AM bug #9393 (Feedback): NPE when removing parent from TaxonNode editor
- I got a very similar NPE when deleting the "reuse existing name":
~~~
last remote method : http://test.e-taxono... - 12:24 PM bug #9350 (Feedback): Create new taxonnode ignores the publish flag
- Works as expeccted.
Should we check after the release that the code merge worked correctly? Or should we close tic... - 12:03 PM task #9407 (New): Reuse taxon should check classification before save
- Reusing a taxon is not allowed in the same classification. If doing so anyway in the taxon node dialogue an error is ...
- 12:03 PM Revision f82805a7 (taxeditor): ref #9393: avoid NPE
- 11:56 AM Revision 39973b73 (taxeditor): ref #9393: disable sec selection if reused taxon is used
- 11:37 AM bug #9369: Reference Detail is missing in MediaSpecimen details view
- Andreas Müller wrote:
> The missing reference detail is fixed.
>
> The spaces between some fields are still missi... - 11:06 AM bug #9369 (Feedback): Reference Detail is missing in MediaSpecimen details view
- The missing reference detail is fixed.
The spaces between some fields are still missing.
Moving the URI to top ... - 11:05 AM Revision 46f38420 (taxeditor): ref #9393: fix problems when removing reused name - code cleaning
- 11:05 AM Revision 6d284e79 (taxeditor): ref #9393: fix problems when removing reused name
- 10:53 AM bug #9371 (Closed): Media bulk does not persist data anymore
- No it saves as expected
- 10:50 AM bug #9382 (Closed): For nomenclatural source show taxonname in referencing objects view
- Looks fine.
- 10:38 AM bug #9382: For nomenclatural source show taxonname in referencing objects view
- I dis some further changes and NPE prevention. Please have a look and close if you think it is ok.
- 10:37 AM bug #9382: For nomenclatural source show taxonname in referencing objects view
- Applied in changeset commit:taxeditor|db226011dbf5f1c7de1060d15dce17f7faaed67f.
- 10:48 AM feature request #9375 (Closed): Alphabetical order for reference type drop down
- Works as expected.
- 10:43 AM bug #9391 (Closed): If named area level does not exist remove the level information
- Looks fine
- 10:37 AM Revision db226011 (taxeditor): fix #9382 handle potential NPE and adapt label to make clear that it is not the name itself but the source that is referencing
- 10:26 AM Revision 36fdf767 (taxeditor): cleanup
- 09:43 AM feature request #9404: Open issues for Tropicos Import
- Maybe the format will change in future:
WGB to Chuck Miller:
I see that the Tropicos Name Matching is working aga... - 09:06 AM bug #9403 (Closed): cleanup function cdm_related_taxon() from used paramerters and css class attributes
- 09:06 AM bug #9403 (Resolved): cleanup function cdm_related_taxon() from used paramerters and css class attributes
- Applied in changeset commit:cdm-dataportal|846f21e18654a33f2027824599149834c0aff88a.
- 09:05 AM Revision 846f21e1 (cdm-dataportal): fix #9403 cleanup function cdm_related_taxon() from used paramerters
01/20/2021
- 08:06 PM bug #6164: cyprus: invalid data causing crash in modifier editor
- test if this is still an open issue.
- 07:55 PM feature request #3502: extensions not yet handled in compose_cdm_specimenOrObservation()
- target version is missing! Put on current milestone like other specimen related issues?
- 07:49 PM task #3485: object graph returned by REST services can be specified by initstrategy
- target version is missing! Is this still an open issue?
- 07:48 PM bug #3480: tagged text with square bracket confuses json
- target version is missing. I put it to same milestone as related ticket. Please change if this is wrong.
- 07:40 PM feature request #3030: Jenkins php jobs: setup for code analysis, mess detection etc..
- target version is missing! Is it still an open issue?
- 07:37 PM feature request #6016: ICN rules in cdm validation framework implemented
- target version is missing! Is it still an open issue?
- 07:35 PM feature request #6598: Migrate commands and handlers
- target version is missing!
Can we assess in current milestone what still needs to be done to close this ticket. Th... - 07:30 PM task #9377: Update of other platform user documentation
- target version is missing!
- 07:27 PM feature request #8182: show blast search result
- is this still an open issue? Should it be reviewed? Should open issues be moved to new ticket?
Is there an example... - 07:25 PM bug #7829 (Closed): Improve deduplication of parsed names and references
- This has been finished (with few exceptions) in #9085.
- 07:10 PM feature request #6133 (Closed): Improve Rank Webservice
- Created follow up #9406 for open issue, close this ticket
- 07:09 PM feature request #9406: Open issue for Edaphobase rank web service
- put to low priority as edaphobase is currently not active
- 07:08 PM feature request #9406 (Rejected): Open issue for Edaphobase rank web service
- follow up for #6133
Open issue:
* representations are not mapped to a language
- 06:49 PM task #5085: Aggregate Distributions
- This is a duplicate for some other tickets: #5176, #8679, #8677 and maybe someother.
Should be tested on FauEu Data ... - 06:33 PM bug #7665 (Closed): ConcurrentModificationException when closing Editor
- If at all it happens very seldom. We should open a new ticket with a new stacktrace if it happens again.
- 06:23 PM bug #1119 (Duplicate): [PARSER] Duplicate inreferences created during parsing are NOT merged when data gets saved
- This has been fully fixed in #9085 so close this ticket as duplicate
- 06:04 PM bug #3737 (Closed): Protected caches for taxa and names behave inconsistent
- The first issue is solved. The second was improved, however, it still sometimes works inconsistent meaning that the s...
- 06:04 PM bug #9405 (In Progress): Fields set to irrelevant for cache should be set by state only
- 06:02 PM bug #9405 (Closed): Fields set to irrelevant for cache should be set by state only
- follow up from #3737
Currently this is not yet the case as they are set during UI update by calling refresh only o... - 05:52 PM feature request #6965 (Closed): Tropicos Import
- open issues copied to #9404, close this
- 05:51 PM feature request #9404 (New): Open issues for Tropicos Import
- copied from #6965
* Tests genauer
* Progressmonitor
* "Analyse" vor Import
* Klären, welche Funktionen von ... - 04:25 PM Revision d016b62b (cdmlib): ref 6308: result should be ok, if taxon can be deleted but not the name
- 04:16 PM Revision 931ee538 (taxeditor): typo
- 03:13 PM bug #7223 (Closed): ReferenceEditor: disable fields depending on the Reference type
- Andreas Müller wrote:
> Personal Communication has no DOI neither in the interfaces nor in TaxEditor. If this is ava... - 03:12 PM Revision 46f7b66d (cdmlib): ref #7223 proper definition of IPersonalCommunication in ReferencePropertyDefinitions
- 02:53 PM bug #7764 (Closed): Fix classification and synonym bug in taxon name freetext search
- works as expected, see for example the http://caucasusflora.org/ where subtree limitation, classification and `doSyno...
- 02:46 PM bug #7108 (Closed): supress unwanted sourcetypes in handle_annotations_and_sources()
- Andreas Müller wrote:
> Works fine now and ticket can be closed.
>
> I only wonder if only a citation micro refer... - 02:40 PM feature request #7720 (Closed): use new taxonRelationshipsDTO webservice for all taxon relations
- cleanup TODO copied to #9403 and now closing this ticket
- 02:38 PM bug #9403 (Closed): cleanup function cdm_related_taxon() from used paramerters and css class attributes
- 1.) remove unused parameters:
`$relsign = NULL, $reltype_representation = NULL, $doubtful=false, $doLinkTaxon = FA... - 02:11 PM Revision c27b3a19 (cdmlib): ref #9290 castTo method for TypedEntityReference
- 02:03 PM feature request #7417 (Closed): Make pro parte and partial synonym relationships always visible in data portals
- this is fully implemented and also covered by the tests on the synonymy of *Miconia cubacinerea* in the reference dat...
- 01:53 PM bug #7745 (Closed): Subtree filter for dataportal services
- 01:51 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> For the polytomous keys the following webservices need to be filtered by the subTree to ... - 01:51 PM task #9402 (New): Subtree filter for polytomousKey and polytomousKeyNode services
- For the polytomous keys the following webservices need to be filtered by the subTree to avoid unpublished taxa showin...
- 01:49 PM bug #7386 (Closed): TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a basionym
- 01:44 PM bug #9401 (New): Name bulk editor: focus gets lost when list loading is going on
- Allerdings habe ich ein Problem damit den Fokus im Bulkeditor dauerhaft auf einen Namen zu setzten. Solange der Bulke...
- 01:39 PM Revision d7d6bc83 (cdm-vaadin): ref #9290 making TypeDesignationWorkingsetEditorIdSet --> TypeDesignationWorkingsetIds more clear
- 01:38 PM bug #9290 (Resolved): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- Hi Henning, could you please make some tests in the test-server to make sure the changes are not causing problems wit...
- 01:32 PM Revision 0b71a670 (cdm-vaadin): ref #9290 making TypeDesignationWorkingsetEditorIdSet --> TypeDesignationWorkingsetIds more clear
- 12:43 PM Revision c63cad99 (cdmlib): fix #9391: fix test
- 12:39 PM bug #9373: In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- I can't reproduce this. When the titlecache is protected, the field is enabled and the button shows the open lock.
!... - 11:55 AM Revision eb2005b8 (cdmlib): ref 6308: check for namedeletion in taxonbase isDeletable and add warning if not deletable
- 11:54 AM feature request #6308 (Closed): Add configuration dialog for the deletion of synonyms in name editor
- Andreas Müller wrote:
> The 2 warnings do not show up anymore so we can close this ticket.
> However, I am a bit as... - 11:34 AM bug #9398 (In Progress): ObjectNotFoundException when removing a synonym that is used as NameInSource
- 11:33 AM bug #9398: ObjectNotFoundException when removing a synonym that is used as NameInSource
- I think the problem is that the name used as "name used in source" still have the information to be the name of the d...
- 11:03 AM Revision 4f7744bd (cdmlib): fix #9391: fix test
- 10:46 AM Revision c530ad2e (taxeditor): ref #9393: remove possibility to delete parent in newTaxon wizard
- 10:41 AM bug #9393 (Resolved): NPE when removing parent from TaxonNode editor
- The newTaxon wizard does not allow deleting the parent taxon anymore. To create a orphan taxon the user should use th...
- 10:25 AM Revision cc9c04a4 (cdm-vaadin): ref #9290 cleaning up
- 09:43 AM Revision 91e53109 (cdm-vaadin): ref #9290 SpecimenTypeDesignationEditor now using designation reference correctly
- 09:38 AM bug #9391: If named area level does not exist remove the level information
- please review
- 09:38 AM bug #9391 (Resolved): If named area level does not exist remove the level information
- Applied in changeset commit:cdmlib|6d7fe5d574d1264196441524f674c24732b248a0.
- 09:38 AM Revision 6d7fe5d5 (cdmlib): fix #9391: if no level exist remove class name in label with level in namedArea
- 08:39 AM task #9400 (New): Check whether it is possible to set rights to reduce the work to descriptive datasets
- mail NK:
Deshalb schon mal die Frage: Gibt es separate Rechte ausschließlich für Arbeit mit Descriptive Data Sets,...
01/19/2021
- 07:18 PM Revision 888558ae (taxeditor): simplify rank handling
- 06:56 PM Revision 68b29e1f (taxeditor): make getCollection method final and remove deprecated annotation
- 06:54 PM Revision 688220c6 (taxeditor): cleanup
- 04:18 PM Revision 508b8f01 (cdm-vaadin): ref #9290 NameTypeDesignationEditor now using designation reference correctly
- 04:01 PM feature request #6076 (Closed): Specimen biocase search should work on observations
- this ticket was about the filter on preservedSpecimen in the biocase search, now all records can be found. Comparing ...
- 03:32 PM feature request #7345 (Resolved): [E+M] Common name references selectable in TaxEditor
- this seems to be fixed, the preference is available and activate and deactivate the filtering for common name referen...
- 03:09 PM feature request #7810 (Closed): DB preference to make Specimen editors visible
- Changed the title of this ticket because only the editor availability was implemented in 5.4, for the other issues a ...
- 03:09 PM feature request #9399 (New): DB preference to make all Specimen functionality/menu items invisible
- the preference to hide all specimen related parts of the editor already exist (see #7810), but the implementation of ...
- 02:58 PM bug #9354: Sorting in distribution editor is broken
- please review.
- 02:57 PM bug #9354 (Resolved): Sorting in distribution editor is broken
- this is fixed now by sorting the list on server side. The sortMode is a method parameter.
- 09:08 AM bug #9354: Sorting in distribution editor is broken
- Andreas Müller wrote:
> Generally the comparator should work the same way as the taxon navigator compartor. But th... - 02:56 PM feature request #8889 (In Progress): Remaining issues for distribution editor - continue
- 02:55 PM Revision 5594bd68 (taxeditor): ref #8889: the dto list is already ordered for distribution editor, add sortMode to method call
- 02:41 PM Revision bed37770 (cdmlib): ref #8889: sort taxonnodes for distribution editor on server side
- 01:03 PM Revision b66bc2e5 (taxeditor): cleanup
- 12:47 PM bug #7386: TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a basionym
- can be set to closed
- 12:11 PM task #9300: Name Page: harmonize media specimen lectotype representations
- Andreas Müller wrote:
> so should we change status to "in progress" as questions are solved?
the conclusion is only ... - 11:55 AM task #9300: Name Page: harmonize media specimen lectotype representations
- so should we change status to "in progress" as questions are solved?
- 11:49 AM task #9300: Name Page: harmonize media specimen lectotype representations
- Wolf-Henning Kusber wrote:
> Nein, stimme nicht zu
after an extensive discussion we concluded the following inter... - 10:42 AM task #9300: Name Page: harmonize media specimen lectotype representations
- Nein, stimme nicht zu
01/18/2021
- 10:38 PM Revision 780809e8 (taxeditor): remove unused parent
- 10:38 PM Revision bc137806 (taxeditor): cleanup
- 07:11 PM Revision 17337b4f (taxeditor): fix generics compile error
- 05:27 PM Revision 17eaac4f (taxeditor): cleanup
- 05:24 PM Revision 9f1bb997 (taxeditor): ref #9354: improve sorting in distribution editor
- 05:21 PM Revision 87855850 (cdmlib): ref #9354: add nodeDto to TaxonDistributionDTO
- 04:11 PM Revision ad7201d3 (taxeditor): cleanup and generics for ICdmEntitySessionEnabled
- 03:54 PM bug #9354: Sorting in distribution editor is broken
- Andreas Müller wrote:
> There are still open issues as the comparator does not follow the comparator contract and ha... - 09:35 AM bug #9354: Sorting in distribution editor is broken
- I put this to critical as it is a requirement the E+M Bratislava team to edit disttribution data for CZ and SK which ...
- 03:03 PM Revision 28ead5fc (taxeditor): cleanup
- 02:21 PM bug #9398 (Closed): ObjectNotFoundException when removing a synonym that is used as NameInSource
- Either this is a problem on the order of operations during save. Or it is a general issue with merge where it could b...
- 02:18 PM bug #9397 (Closed): Derivate tree view must show DerivedUnits even if the FieldUnit is missing
- see also #7704 for the same problem in the specimen table
- 02:05 PM Revision 26f72855 (cdmlib): fix #9395 DerivedUnit.collectFieldUnits() as DerivedUnit.collectRootUnits() to return all types of root units - removig debug code
- 01:41 PM bug #9396 (Closed): nomenclatural status missing in typedesignations shown in synonymy
- Example:
http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/64e9f775-79fc-41cf-b154-225e8a4bc7d1
T... - 01:08 PM feature request #6308 (Feedback): Add configuration dialog for the deletion of synonyms in name editor
- The 2 warnings do not show up anymore so we can close this ticket.
However, I am a bit astonished that no warning ex... - 12:31 PM Revision 1e863be8 (cdmlib): cleanup
- 12:21 PM bug #9395: DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
- Hi, for your information:
to solve this ticket I renamed and extended DerivedUnit.collectFieldUnits() as DerivedUn... - 12:17 PM bug #9395 (Resolved): DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
- Applied in changeset commit:cdmlib|485da8a92ae3a4c4c51e5631561d368de0915206.
- 11:57 AM bug #9395 (Closed): DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units
- DerivedUnit.collectFieldUnits() needs to returns also DerivedUnits as root unit which do not have a FieldUnit. This i...
- 12:17 PM Revision 485da8a9 (cdmlib): fix #9395 DerivedUnit.collectFieldUnits() as DerivedUnit.collectRootUnits() to return all types of root units
- 11:37 AM feature request #7886 (Closed): Divide local preferences to db dependend local preferences
- The open issue was moved to new ticket #9394.
This ticket can be closed. - 11:36 AM bug #9394 (New): Local preferences can not be edited if no database connection exists
- All database dependend preferences should be disabled in this case
- 11:31 AM bug #7236 (Closed): Make available distribution status a database preference for TaxEditor distribution editor
- This seems to be fixed. Open a new ticket if something does not work yet as expected.
- 11:15 AM feature request #4363 (Resolved): Show more informative message for unsupported specimen structures in specimen bulk editor
- 11:11 AM bug #4362 (Closed): Some File->New dialogs do not work
- 11:10 AM bug #4362: Some File->New dialogs do not work
- >Name cache fields behave strange as even with protected title cache they are not completely disabled.
This seems... - 11:05 AM bug #9393 (In Progress): NPE when removing parent from TaxonNode editor
- ~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxonnode.service
last remote ... - 11:05 AM feature request #9392 (New): File -> new for specimen and taxa should be available again
- With fixing #4362 specimen and taxa were removed, this should be reverted.
The creation of empty specimen should n... - 10:50 AM bug #6955 (Closed): NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache loading
- This is fixed. The open issue is moved to a follow up ticket: #9391
- 10:50 AM bug #9391 (Closed): If named area level does not exist remove the level information
- from #6955:
in NamedArea selection dialog:
As #7144 is solved now, we should remove the showing of the class name... - 10:45 AM feature request #7121 (Closed): adapt remaining UuidAndTitleCache methods to use filter
- As this is too long ago we close the ticket without linking to the revert.
- 10:43 AM bug #7124 (Closed): Avoiding multiple repesentation exceptions by removing the conversation from selection dialogs
- This seems to be fixed.
- 10:38 AM feature request #6076 (Feedback): Specimen biocase search should work on observations
- 10:37 AM feature request #6076 (Resolved): Specimen biocase search should work on observations
- 10:34 AM feature request #6076 (Feedback): Specimen biocase search should work on observations
- 10:26 AM feature request #6315 (Closed): Implement setSecundumForSubtree in TaxEditor
- 10:25 AM feature request #6315: Implement setSecundumForSubtree in TaxEditor
- Andreas Müller wrote:
> There is also a lot of space between label "New secundum reference" and the text box for the... - 10:23 AM bug #9390 (In Progress): Remaining issues for set secundum dialog
- follow up from #6315
1. ~~there is too much space between label "If no reference is chosen ... " and the checkboxe... - 08:47 AM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
- Keep it in 5.18 for check whether it is already fixed.
01/15/2021
- 04:00 PM bug #9379 (Closed): exclude disabled classifications from advanced taxon search form
- 03:59 PM bug #9379 (Resolved): exclude disabled classifications from advanced taxon search form
- Applied in changeset commit:cdm-dataportal|5f5db6555726b52d86587db4c3834f8130d75011.
- 03:59 PM Revision 5f5db655 (cdm-dataportal): fix #9379 excluding unselected classifications from search form and harmonizing fitering code
- 02:00 PM feature request #7599: treeView for specimen data in dataportal
- Ahh, ich sehe gerade, dass in #9216 schon die finale Lösung hinterlegt ist.
- 01:58 PM feature request #7599: treeView for specimen data in dataportal
- Andreas Kohlbecker wrote:
> [Andreas Müller wrote:]
>
> wenn ich es richtig verstehe bezieht sich das auf die De... - 01:34 PM Revision 20b503f3 (cdm-dataportal): ref #7599 showing link for present character data
- 01:31 PM bug #9386: orthographic variants should not be symmetrical
- Hallo,
ich denke mittlerweile, dass wir zwei Beziehungen brauche wie schon von Andreas Müller vorgeschlagen:
>... - 01:21 PM bug #9386: orthographic variants should not be symmetrical
- [Eckhard wrote]
Hallo,
nach neuerlichem Lesen des At. 61 gebe ich dir recht, Walter: die gültige orthographisch... - 12:29 PM bug #9386: orthographic variants should not be symmetrical
- Ich möchte nochmal explizit auf die Probleme hinweisen, die sich datenverabeitungsseitig aus symmetrischen Beziehunge...
- 12:17 PM bug #9386: orthographic variants should not be symmetrical
- Wolf-Henning Kusber wrote:
> What is about data exports? Isn't it maybe more problematic if the relation symetrical ... - 12:10 PM bug #9386: orthographic variants should not be symmetrical
- Andreas Kohlbecker wrote:
> auch wenn diese Beziehung zwischen zwei Namen im Modell als ungerichtet definiert ist, b... - 12:07 PM bug #9386: orthographic variants should not be symmetrical
- Andreas Kohlbecker wrote:
> Ich würde dafür plädieren die Benennung der Relation beizubehalten, sie aber im Modell a... - 11:54 AM bug #9386: orthographic variants should not be symmetrical
- Andreas Kohlbecker wrote:
> auch wenn diese Beziehung zwischen zwei Namen im Modell als ungerichtet definiert ist, b... - 11:23 AM bug #9386: orthographic variants should not be symmetrical
- Das Datum sollte die meisten Fälle korrekt einsammeln. Wie Andreas sagt, sollte eine Richtung erkennbar sein. Ausnahm...
- 11:00 AM bug #9386: orthographic variants should not be symmetrical
- Hallo,
auch wenn diese Beziehung zwischen zwei Namen im Modell als ungerichtet definiert ist, besteht dennoch eige... - 10:46 AM bug #9386: orthographic variants should not be symmetrical
- What is about data exports? Isn't it maybe more problematic if the relation symetrical in EDIT?
- 10:36 AM bug #9386: orthographic variants should not be symmetrical
- > WGB:
>
> richtig, Art. 61.1 sagt, dass es nur eine gültige („valid“, nicht „correct“) Variante gibt, aber er spr... - 09:50 AM bug #9386: orthographic variants should not be symmetrical
- ERS:
ja, es kann nur eine korrekte orthographische Variante geben, und daher ist die Richtung nicht symmetrisch: s... - 12:11 PM bug #9257 (Closed): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- can be closed as open taks are copied to #9389
- 12:11 PM task #9389 (Closed): further improvement and revision of derivative filtering by type and DerivedUnitDTO
- this is a follow-up ticket of #9257
see the comments in commit:aa52b6f0 for more details.
FieldUnitDTO.java:
... - 11:07 AM Revision 4d95ead5 (cdm-dataportal): fixing deprecated use of join()
- 10:26 AM Revision 69a9dd7b (cdm-dataportal): fixing composition of invalid URLs for specific cases
- 10:25 AM bug #8874 (Resolved): move taxon is reverted when taxon is edited afterwards
- this ticket was solved and assigned to you for review, sorry forgot to set to resolved.
- 10:12 AM bug #9356 (Resolved): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- adapted the comparator in cdmlib and removed hotfix workaround, please review.
- 10:11 AM Revision c018f269 (taxeditor): ref #9356: remove hotfix workaround
- 10:00 AM Revision 8e507020 (cdmlib): ref #9356: adapt TypeDesignationComparator
- 09:44 AM bug #9365: Reuse taxon does not work in new Taxon dialogue
- please review
- 09:43 AM bug #9365 (Resolved): Reuse taxon does not work in new Taxon dialogue
- Applied in changeset commit:taxeditor|de6b6edbe71e3f03039fbc6436ad7edba7651e3b.
- 09:43 AM Revision de6b6edb (taxeditor): fix #9365: fix reuse taxon in newTaxonNodeWizard
01/14/2021
- 03:14 PM Revision c5c25011 (cdmlib): ref #9332 re-organizing source(es) in TypeDesignation init-strategy
- 03:06 PM Revision 600742ea (cdm-dataportal): whitespace
- 03:05 PM Revision f4c60bdf (cdm-dataportal): ref #9384 adapting test to modified createShortCitation method
- 01:27 PM feature request #9388 (New): show media specimen source in all pages
- By now the `MediaSpecimen.media.souces.citation` is only shown in the registration page:
Registration page for
... - 12:11 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- There was the same issue while working with character matrix:
mail NK:
hm, es scheint aber doch noch ein Proble... - 11:55 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- This way is would be more concise:
~~~java
boolean isCanceled = false;
while (true){
... - 11:41 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- Andreas Kohlbecker wrote:
> As far as I am understanding this problem it is the bulk editors which can be saves or c... - 11:43 AM Revision 6ce970f7 (taxeditor): ref #7699: wait for the thread to stop
- 11:12 AM bug #7711 (Resolved): Bugs in media gallery
- The issues mentioned above are solved except that deleting takes extremely long, I could not reproduce it anymore.
... - 11:07 AM Revision 0291fd25 (taxeditor): fix NPE in TextWithLabelElement
- 10:16 AM bug #9386: orthographic variants should not be symmetrical
- Wolf-Henning Kusber wrote:
> It is correct that there is only one correct spelling. In PhycoBank, we need to registe... - 10:12 AM bug #9386: orthographic variants should not be symmetrical
- WGB:
richtig, Art. 61.1 sagt, dass es nur eine gültige („valid“, nicht „correct“) Variante gibt, aber er spricht a... - 10:10 AM Revision 5aa8ceb0 (cdmlib): ref #7711: delete last media in galery should not delete description
- 08:50 AM bug #9387 (Closed): LazyInitializationException (LIE) in NameController.doGetTypeDesignationsInHomotypicalGroup()
- 08:49 AM bug #9387 (Resolved): LazyInitializationException (LIE) in NameController.doGetTypeDesignationsInHomotypicalGroup()
- Applied in changeset commit:cdmlib|f836859b0030a90cd789ea4e4fd1d24440293bcb.
- 08:31 AM bug #9387 (Closed): LazyInitializationException (LIE) in NameController.doGetTypeDesignationsInHomotypicalGroup()
- doGetTypeDesignationsInHomotypicalGroup()GET: /cdmserver/greece_bupleurum_01_with_onthology/name/b0372cc9-cc9e-46c8-a...
- 08:49 AM Revision f836859b (cdmlib): fix #9387 extending init strategy
01/13/2021
- 06:29 PM bug #9386: orthographic variants should not be symmetrical
- It is correct that there is only one correct spelling. In PhycoBank, we need to register the published name "as is" =...
- 06:12 PM bug #9386 (New): orthographic variants should not be symmetrical
- According to the nomenclatural code there is always only 1 valid orthographic variant so the name relationship should...
- 05:29 PM task #8455: Show specimen preferredStableURL as external link icon?
- Screenshot for long URI in typification:
- 05:16 PM task #8455: Show specimen preferredStableURL as external link icon?
- Detail screenshot from the Derivate tree view (the derivate path view looks quite the same):
: DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- as we talk about bibliographic references here the ICN (or any other code) is not relevant here. It is the rule I hav...
- 04:44 PM bug #9384: DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- The implementation is correct as far as the the implemented formatting rule for more than two authors is holding true...
- 04:18 PM bug #9384: DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- The fix was not fully correct as it created teams like Name1, Name2 & al. but there should be always a maximum number...
- 04:20 PM Revision 22b89169 (cdmlib): add javadoc comment
- 04:14 PM Revision 619db306 (cdmlib): fix #9384, ref #9279 fixed incorrect implementation of createShortCitation and added tests
- 04:12 PM Revision 8b822608 (cdmlib): cleanup
- 02:51 PM Revision 02879fb5 (taxeditor): fix state vocabulary menu parameter
- 02:47 PM bug #7711 (In Progress): Bugs in media gallery
- 12:08 PM bug #9369 (Resolved): Reference Detail is missing in MediaSpecimen details view
- please review
- 12:07 PM Revision 66e893c0 (taxeditor): published in details more detailed label
- 12:07 PM bug #9372 (Resolved): in media details view unprotected title cache is not updated when underlying data is changed
- this ios fixed, please review
- 12:06 PM Revision 527b4867 (taxeditor): fix update of media details header and add published in details
- 11:41 AM bug #9371: Media bulk does not persist data anymore
- please review
- 11:36 AM bug #9371 (Resolved): Media bulk does not persist data anymore
- Applied in changeset commit:taxeditor|0ef0103a664888c0e398b9ab5f83b0c170c5a599.
- 11:36 AM Revision 0ef0103a (taxeditor): fix #9371: fix save in media bulk editor
- 09:58 AM task #9385 (New): Simplyfy boundingbox setting for user fixed map clipping
- Problem:
The settings in `admin/config/cdm_dataportal/settings/geo` for the **Bounding box** needs to be complian...
01/12/2021
- 04:57 PM Revision 2a28e5d2 (cdmlib): TypedEntityReference: factory method with option to supress the label & using this in TypeDesignationSetFormatter
- 04:50 PM Revision bf3b398f (cdmlib): fixing inappropriate use of TypedEntityReference for creating tagged text in TypeDesignationSetFormatter
- 04:33 PM bug #9384: DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- please review
Tests for this method are missing and should be implemented asap. Please could you open a new ticke... - 04:32 PM bug #9384 (Resolved): DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- Applied in changeset commit:cdmlib|854244ff90c5ff67a0b30a3cee7f1d49e7623cc5.
- 04:30 PM bug #9384: DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- 04:29 PM bug #9384 (Closed): DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- see https://api.phycobank.org/phycobank/registrationDTO.json?identifier=http://phycobank.org/102662
The Team "Mo... - 04:32 PM Revision 5abafe6a (cdmlib): fixing NPE in RegistrationDTOController when identifier is not found
- 04:32 PM Revision 854244ff (cdmlib): fix #9384 fixing author team truncation
- 03:19 PM bug #9383 (Closed): Adapt apache configuration to modified dataportal registration page URL pattern
- 02:57 PM bug #9383 (Closed): Adapt apache configuration to modified dataportal registration page URL pattern
- the apache configuration of edit-community needs to be adapted to the changes made for #9220
- 02:42 PM Revision 72a0a6e9 (taxeditor): fix link for webapp war
- 11:55 AM bug #9174: After longer inactivity NPE for cache
- Andreas Müller wrote:
> This is maybe the same as #7699
?? - 11:16 AM bug #9382 (Resolved): For nomenclatural source show taxonname in referencing objects view
- 11:15 AM bug #9382 (Closed): For nomenclatural source show taxonname in referencing objects view
- In referencing objects view the taxon name of a nomenclatural source is not shown, only 'sourced object not available'
- 09:34 AM feature request #9381 (New): Refresh button for character matrix
- After adding new characters the matrix needs to be closed and reopened to get the changes. To optimize the workflow a...
01/11/2021
- 10:13 PM feature request #9380 (New): It is not possible to show MediaRepresentation(Part) supplemental data
- ... as they can not be explicitly selected in the details view. This should be possible (e.g. for showing id and uuid)
- 05:20 PM bug #8760: Presentation and linking of molecular data in specimen table too unclear
- another example: http://caryophyllales.org/cactaceae/cdm_dataportal/taxon/d7bb858b-d8e0-4f9a-8a47-081d1cb740e9
- 04:15 PM Revision d365bbda (taxeditor): use OrderIndexComparator for distributionEditor
- 04:13 PM Revision 2ec77b4a (taxeditor): add compare package
- 02:37 PM bug #9379 (Closed): exclude disabled classifications from advanced taxon search form
- Classifications which are disabled in the `admin/config/cdm_dataportal/settings` are to be excluded from the advanced...
- 11:53 AM EDIT Platform Etablierung report #9378 (Closed): Meeting EDIT Platform documentation 2021-02-22
- WebEx Meeting: https://fu-berlin.webex.com/fu-berlin/j.php?MTID=ma3d5a3cfabd30fbfdccb11e37122a1e4
## Teilnehmer:
... - 11:45 AM EDIT Platform Etablierung task #8580 (Closed): Update documentation to latest revision of the Taxeditor
- all Taxeditor documentation has been updates in Okt 2019, other activities are subject of #9377
- 11:44 AM task #9377 (In Progress): Update of other platform user documentation
Documents to check:
* Manual-EDIT-Platform-01-INSTALL.docx **DONE** in #8580
* Manual-EDIT-Platform-02-DEMO.doc...- 11:41 AM EDIT Platform Etablierung task #9108 (Closed): Prepare Kurs Borsch
- completed
- 11:39 AM task #9376 (New): git checkout of datportal module fails with locally modified files
- locally modified files prevent from updating the local git clone to the required version of the dataportal module.
... - 11:28 AM Revision 90d80081 (taxeditor): setText in TextWithLabelElement should use trim()
- 11:09 AM feature request #9375 (Resolved): Alphabetical order for reference type drop down
- 11:09 AM feature request #9375 (Closed): Alphabetical order for reference type drop down
- mail AM:
weißt du, ob es einen Grund gibt, dass Section in der RefType Auswahl ganz oben steht, während alle ander... - 11:07 AM Revision e6e3f311 (taxeditor): alphabetical order for refType combo
- 09:51 AM bug #9374 (Closed): ClassCastException when switching between media
- When switching between media of one taxon following CCE is thrown:
~~~ text
last remote method : http://api.cyber...
01/10/2021
- 11:05 AM Revision 0ccecb37 (cdmlib-apps): ref #1447 latest changes to PesiFindIdenticalNamesActivator and PesiEuroMedValidator
- 11:02 AM Revision cd156f0a (cdmlib-apps): latest changes to PesiTaxonExport
- 11:01 AM Revision 8b256be0 (cdmlib-apps): ref #6591 adapt PESI import to new original spellings handling
- 10:56 AM Revision c1a8faa1 (cdmlib): ref #6591 adapt PESI import to new original spellings handling
- 10:54 AM Revision b36706c7 (cdmlib): cleanup
01/09/2021
- 04:17 PM Revision 45c2e0b4 (cdmlib-apps): ref #1447 latest changes to PesiCommandLineMerge and PesiMergeObject
- 04:11 PM Revision 600a00cd (cdmlib): cleanup
- 11:24 AM feature request #5575 (In Progress): DNA Sample requires CacheStrategy
- I added a very first version for DNASample cache strategy to avoid the -titleCache not availble- messages
- 11:22 AM Revision 26008f31 (cdmlib): ref #5573, ref #7612 adapt MediaSpecimenDefaultCacheStrategy to OccurrenceCacheStrategyBase
- 11:21 AM Revision a30452ad (cdmlib): ref #5575 add first version of DnaSample cache strategy
- 01:36 AM feature request #7612: CacheStrategy for MediaSpecimens
- I implemented now a very basic version of the cache strategy to avoid -titleCache not yet implemented- messages
- 01:34 AM feature request #7612 (In Progress): CacheStrategy for MediaSpecimens
- To me it is a bit unclear what the suggestion is how the MediaSpecimen cache strategy should be implemented.
- 01:30 AM Revision 197a9558 (cdmlib): ref #7612 a first (preliminary) version of MediaSpecimenDefaultCacheStrategy
- 01:03 AM Revision 4dbcb616 (cdmlib): cleanup and use TermTestBase for model tests
01/08/2021
- 10:30 PM Revision fb6b774e (cdmlib): cleanup
- 07:52 PM bug #9373 (Closed): In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- instead you first have to click on the protected button which does not change the button but the text field gets enabled
- 07:49 PM bug #9371: Media bulk does not persist data anymore
- See also related tickets when fixing this.
- 07:38 PM bug #9371 (Closed): Media bulk does not persist data anymore
- except for create and delete
I tested for title, description, uri, supplemental data = > nothing worked
This is... - 07:48 PM bug #9372 (Closed): in media details view unprotected title cache is not updated when underlying data is changed
- e.g. when only URI exists usually the title is the file name but changing the URI does not change the title field.
H... - 07:32 PM feature request #9370 (New): Search in media bulk editor should include search on URI
- there are multiple usecases for this
- 07:17 PM bug #9369 (Closed): Reference Detail is missing in MediaSpecimen details view
- but the detail often is important. In general we could also implement as like a (single) source but there is some mor...
- 03:56 PM bug #9368 (Closed): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
- ~~~
15:51:31.562 [cichorieae] [qtp990416209-33917] INFO e.e.c.r.c.iiif.ManifestController - doGetMedia() GET: /cich... - 02:51 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Hi Andreas,
ich bin ja gerade dabei #9132 auch für Cichorieae zu machen. Die Links habe ich bereits alle umgestel... - 12:36 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Links in the Cichorieae database have all be updated to use the scaler API.
Only open issue is now to reload metad...
01/07/2021
- 01:16 PM bug #9367: E+M shapefile Baltic subarea borders always visible and remove Georgian subdivisions
- This may require to modify the SLD file for the euromed layer
- 01:15 PM bug #9367 (New): E+M shapefile Baltic subarea borders always visible and remove Georgian subdivisions
- ERS:
gerade fällt mir auf, dass die Arealgrenzen innerhalb des Baltikums seltsamerweise nicht angezeigt werden, we...
01/06/2021
- 02:27 PM feature request #9114: Handle malformed URIs in user type
- In #9111#note-1 AK suggests to also encode fragment and query parts. This has **not** been implemented in the origina...
- 02:15 PM feature request #9114: Handle malformed URIs in user type
- Katja, can you please check if you can find out what the httpinvoker problem is. I currently can't start the TaxEdito...
- 12:08 PM feature request #9114 (In Progress): Handle malformed URIs in user type
- I implemented a new class eu.etaxonomy.cdm.common.URI and use this in model but also at other places like import sour...
- 02:20 PM feature request #9111 (Resolved): Handle Malformed URIs
- I removed the related code again as #9114 is now more or less implemented and URI encoding is now done in cdmlib. Ple...
- 02:18 PM Revision 9916da4a (taxeditor): ref #9111, ref #9114 remove TaxEditor specific URI encoding code as encoding is handled in cdmlib now
- 01:07 PM Revision 84aa450d (cdmlib): uncomment RdfViewTest.testNameInformationRdf as it seems to work currently
- 01:01 PM Revision 9691cba9 (cdmlib): cleanup
- 01:00 PM Revision c22065e1 (cdmlib): ref #9114 fix RdfViewTest
- 11:00 AM Revision 5402f2a6 (cdmlib): cleanup
- 11:00 AM Revision 4ad992ed (cdmlib): ref #9114 further adapt jsonConfigurations and add new constructor to URI wrapper
- 10:50 AM Revision 3154d43f (taxeditor): ref #9114 further adapt some classes to URI wrapper in taxeditor
- 10:49 AM Revision adb769b4 (taxeditor): cleanup
- 10:18 AM Revision f9c3f295 (cdmlib): ref #9114 adapt json mapping to new URI wrapper
- 10:17 AM Revision 6b33224a (cdmlib): ref #9114 adapt javadoc for new URI wrapper user type
- 10:17 AM Revision 7ab5b913 (cdmlib): cleanup
- 01:35 AM Revision 4d87641f (cdmlib): ref #9114 add toFile() to URI to wrapper
- 01:30 AM Revision 5acb8103 (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 01:29 AM Revision 2ab21f97 (taxeditor): cleanup
- 12:34 AM Revision 7b06bd8f (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 12:33 AM Revision 53e60781 (taxeditor): cleanup
01/05/2021
- 09:49 PM Revision 15c5de38 (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 09:49 PM Revision 00b46185 (taxeditor): cleanup
- 09:37 PM Revision 5dfe9f9b (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 09:27 PM Revision 38556872 (taxeditor): cleanup
- 09:26 PM Revision f5a55599 (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 09:07 PM Revision 5b2e9e6b (cdmlib): ref #9114 add compareTo to URI wrapper
- 09:02 PM Revision 96378f2b (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 09:02 PM Revision 66eb9f49 (taxeditor): cleanup
- 08:34 PM Revision c7a6e70f (taxeditor): cleanup
- 08:34 PM Revision bf3cb991 (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor
- 08:16 PM Revision dd94c99b (cdmlib-apps): ref #9114 adapt URI to wrapper in cdmlib-app (cont.)
- 08:13 PM Revision 7cc5a1d7 (cdm-vaadin): cleanup
- 08:13 PM Revision 4cd4de2d (cdm-vaadin): ref #9114 adapt URIs to URI wrapper in vaadin
- 08:08 PM Revision 999006a7 (cdmlib): ref #9114 preliminary ignore RdfViewTest
- 08:07 PM Revision f588e53b (cdmlib): cleanup
- 08:05 PM Revision de8249cf (cdmlib): ref #9114 add URI Wrapper and replace all java.net.URI occurrences by the wrapper in cdmlib
- 07:45 PM Revision 20a31445 (cdmlib-apps): Adapt CentaureaCloneActivator to moved clone method
- 07:45 PM Revision 26790e9b (cdmlib-apps): ref #9114 adapt URI to wrapper in cdmlib-app
- 07:23 PM Revision b920f5c2 (cdmlib-apps): cleanup
- 05:45 PM Revision 2720ea2c (cdmlib): cleanup
01/04/2021
- 07:38 PM Revision 5da100f1 (cdmlib): ref #9366 fix test in TypeDesignationSetManagerTest
- 07:17 PM bug #9366: Specimen type designation with specimen having only collection name but not collection code does not show collection information
- Please review
- 07:14 PM bug #9366 (Resolved): Specimen type designation with specimen having only collection name but not collection code does not show collection information
- Applied in changeset commit:cdmlib|99d3463856a840dd42c0532791b67b299b7b7fed.
- 07:08 PM bug #9366 (Closed): Specimen type designation with specimen having only collection name but not collection code does not show collection information
- e.g. Scorzonera kurtii Yıld. in Ot Sist. Bot. Dergisi 18(2): 15. 2012 in Cichorieae DB
The holotype collection inf... - 07:14 PM Revision 99d34638 (cdmlib): fix #9366 add collection name to specimen titleCache if collection code does not exist
- 07:13 PM Revision 960711fc (cdmlib): cleanup
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