Activity
From 12/14/2020 to 01/12/2021
01/12/2021
- 04:33 PM bug #9384: DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- please review
Tests for this method are missing and should be implemented asap. Please could you open a new ticke... - 04:32 PM bug #9384 (Resolved): DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- Applied in changeset commit:cdmlib|854244ff90c5ff67a0b30a3cee7f1d49e7623cc5.
- 04:30 PM bug #9384: DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- 04:29 PM bug #9384 (Closed): DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members
- see https://api.phycobank.org/phycobank/registrationDTO.json?identifier=http://phycobank.org/102662
The Team "Mo... - 03:19 PM bug #9383 (Closed): Adapt apache configuration to modified dataportal registration page URL pattern
- 02:57 PM bug #9383 (Closed): Adapt apache configuration to modified dataportal registration page URL pattern
- the apache configuration of edit-community needs to be adapted to the changes made for #9220
- 11:55 AM bug #9174: After longer inactivity NPE for cache
- Andreas Müller wrote:
> This is maybe the same as #7699
?? - 11:16 AM bug #9382 (Resolved): For nomenclatural source show taxonname in referencing objects view
- 11:15 AM bug #9382 (Closed): For nomenclatural source show taxonname in referencing objects view
- In referencing objects view the taxon name of a nomenclatural source is not shown, only 'sourced object not available'
- 09:34 AM feature request #9381 (New): Refresh button for character matrix
- After adding new characters the matrix needs to be closed and reopened to get the changes. To optimize the workflow a...
01/11/2021
- 10:13 PM feature request #9380 (New): It is not possible to show MediaRepresentation(Part) supplemental data
- ... as they can not be explicitly selected in the details view. This should be possible (e.g. for showing id and uuid)
- 05:20 PM bug #8760: Presentation and linking of molecular data in specimen table too unclear
- another example: http://caryophyllales.org/cactaceae/cdm_dataportal/taxon/d7bb858b-d8e0-4f9a-8a47-081d1cb740e9
- 02:37 PM bug #9379 (Closed): exclude disabled classifications from advanced taxon search form
- Classifications which are disabled in the `admin/config/cdm_dataportal/settings` are to be excluded from the advanced...
- 11:53 AM EDIT Platform Etablierung report #9378 (Closed): Meeting EDIT Platform documentation 2021-02-22
- WebEx Meeting: https://fu-berlin.webex.com/fu-berlin/j.php?MTID=ma3d5a3cfabd30fbfdccb11e37122a1e4
## Teilnehmer:
... - 11:45 AM EDIT Platform Etablierung task #8580 (Closed): Update documentation to latest revision of the Taxeditor
- all Taxeditor documentation has been updates in Okt 2019, other activities are subject of #9377
- 11:44 AM task #9377 (In Progress): Update of other platform user documentation
Documents to check:
* Manual-EDIT-Platform-01-INSTALL.docx **DONE** in #8580
* Manual-EDIT-Platform-02-DEMO.doc...- 11:41 AM EDIT Platform Etablierung task #9108 (Closed): Prepare Kurs Borsch
- completed
- 11:39 AM task #9376 (New): git checkout of datportal module fails with locally modified files
- locally modified files prevent from updating the local git clone to the required version of the dataportal module.
... - 11:09 AM feature request #9375 (Resolved): Alphabetical order for reference type drop down
- 11:09 AM feature request #9375 (Closed): Alphabetical order for reference type drop down
- mail AM:
weißt du, ob es einen Grund gibt, dass Section in der RefType Auswahl ganz oben steht, während alle ander... - 09:51 AM bug #9374 (Closed): ClassCastException when switching between media
- When switching between media of one taxon following CCE is thrown:
~~~ text
last remote method : http://api.cyber...
01/09/2021
- 11:24 AM feature request #5575 (In Progress): DNA Sample requires CacheStrategy
- I added a very first version for DNASample cache strategy to avoid the -titleCache not availble- messages
- 01:36 AM feature request #7612: CacheStrategy for MediaSpecimens
- I implemented now a very basic version of the cache strategy to avoid -titleCache not yet implemented- messages
- 01:34 AM feature request #7612 (In Progress): CacheStrategy for MediaSpecimens
- To me it is a bit unclear what the suggestion is how the MediaSpecimen cache strategy should be implemented.
01/08/2021
- 07:52 PM bug #9373 (Closed): In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- instead you first have to click on the protected button which does not change the button but the text field gets enabled
- 07:49 PM bug #9371: Media bulk does not persist data anymore
- See also related tickets when fixing this.
- 07:38 PM bug #9371 (Closed): Media bulk does not persist data anymore
- except for create and delete
I tested for title, description, uri, supplemental data = > nothing worked
This is... - 07:48 PM bug #9372 (Closed): in media details view unprotected title cache is not updated when underlying data is changed
- e.g. when only URI exists usually the title is the file name but changing the URI does not change the title field.
H... - 07:32 PM feature request #9370 (New): Search in media bulk editor should include search on URI
- there are multiple usecases for this
- 07:17 PM bug #9369 (Closed): Reference Detail is missing in MediaSpecimen details view
- but the detail often is important. In general we could also implement as like a (single) source but there is some mor...
- 03:56 PM bug #9368 (Closed): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
- ~~~
15:51:31.562 [cichorieae] [qtp990416209-33917] INFO e.e.c.r.c.iiif.ManifestController - doGetMedia() GET: /cich... - 02:51 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Hi Andreas,
ich bin ja gerade dabei #9132 auch für Cichorieae zu machen. Die Links habe ich bereits alle umgestel... - 12:36 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Links in the Cichorieae database have all be updated to use the scaler API.
Only open issue is now to reload metad...
01/07/2021
- 01:16 PM bug #9367: E+M shapefile Baltic subarea borders always visible and remove Georgian subdivisions
- This may require to modify the SLD file for the euromed layer
- 01:15 PM bug #9367 (New): E+M shapefile Baltic subarea borders always visible and remove Georgian subdivisions
- ERS:
gerade fällt mir auf, dass die Arealgrenzen innerhalb des Baltikums seltsamerweise nicht angezeigt werden, we...
01/06/2021
- 02:27 PM feature request #9114: Handle malformed URIs in user type
- In #9111#note-1 AK suggests to also encode fragment and query parts. This has **not** been implemented in the origina...
- 02:15 PM feature request #9114: Handle malformed URIs in user type
- Katja, can you please check if you can find out what the httpinvoker problem is. I currently can't start the TaxEdito...
- 12:08 PM feature request #9114 (In Progress): Handle malformed URIs in user type
- I implemented a new class eu.etaxonomy.cdm.common.URI and use this in model but also at other places like import sour...
- 02:20 PM feature request #9111 (Resolved): Handle Malformed URIs
- I removed the related code again as #9114 is now more or less implemented and URI encoding is now done in cdmlib. Ple...
01/04/2021
- 07:17 PM bug #9366: Specimen type designation with specimen having only collection name but not collection code does not show collection information
- Please review
- 07:14 PM bug #9366 (Resolved): Specimen type designation with specimen having only collection name but not collection code does not show collection information
- Applied in changeset commit:cdmlib|99d3463856a840dd42c0532791b67b299b7b7fed.
- 07:08 PM bug #9366 (Closed): Specimen type designation with specimen having only collection name but not collection code does not show collection information
- e.g. Scorzonera kurtii Yıld. in Ot Sist. Bot. Dergisi 18(2): 15. 2012 in Cichorieae DB
The holotype collection inf...
12/22/2020
- 09:09 PM bug #9365 (Closed): Reuse taxon does not work in new Taxon dialogue
- partly copied from #5114.
If reuse taxon is selected still a new taxon is created.
Also the secundum field shou... - 08:52 PM feature request #4896 (Closed): Bulkeditor: deduplication of objects of different type
- Generally this works. Open issue is handled in #9361
- 08:37 PM task #9364 (In Progress): Cleanup authors with multiple & and protected names and teams
- 07:29 PM task #9364: Cleanup authors with multiple & and protected names and teams
- Protected Teams(nomenclaturalTitle):
AlgaTerra: >14000
Cichorieae: 8487
Cuba: 14
Campanula: 1171
Caryo_amarant... - 03:56 PM task #9364: Cleanup authors with multiple & and protected names and teams
- Protected Names (still without fulltitlecache and authorshipcache):
Bromeliaceae: 584
Cichorieae: 476
Cuba: 567
... - 03:17 PM task #9364 (Closed): Cleanup authors with multiple & and protected names and teams
- (high priority only to first issue as it is related to #2200)
In context of #2200 I already checked names with >1 ... - 08:16 PM feature request #2200 (Closed): Handle multiple authors for names correctly when caching
- This can be closed as it works now as expected. Open data issues are handled in #9364
The only directly related is... - 09:59 AM bug #5163 (Closed): Converting persons to team members may result in "-empty team-"
- The "empty team" issue has been solved. The handling of team members has been moved to follow up ticket #9363 as it i...
- 09:56 AM feature request #9363 (New): Allow to parse the new team when converting person to team
- copied from #5163
When converting a person to a team does not get team members by default. We could add a configur... - 12:14 AM bug #2578 (Closed): Improve "move synonym"
- Now we always move the full homotypical group to the other taxon, so this is fixed.
The check that the synonym is ...
12/21/2020
- 11:39 PM bug #9362 (New): Convert Team to Person and vice versa saves immediately
- When converting a team to a person or converting a person to a team the operation is immediately executed and not wai...
- 11:32 PM feature request #4908 (Closed): adding convert Team to Person and Person to Team to the bulk editor
- Open issues fixed or moved to new ticket.
- 11:27 PM feature request #9361 (New): Give more specific information why person can not be converted to team
- copied from #4908 and #4896 (says that current implementation is only a workaround as a suitable return type for isMe...
- 10:46 PM feature request #4770 (Closed): Allow convert person to team
- the open issue is fixed now. We can close the ticket
- 01:36 PM feature request #4769 (Closed): Allow convert team to person
- I used this intensively for deduplicating authors in cyprus DB and problems never occured. So I guess we can close th...
- 01:26 PM bug #9360 (Feedback): Parsed hybrids can not be persisted
- In Flora of Cyprus I tried to persist a hybrid formula (Aegilops biuncialis × geniculata) but got an NPE in TaxonName...
12/18/2020
- 11:38 PM feature request #7894 (Closed): [CHECK] Import sourceNumber as Identifier for references
- As ERS did not complain about missing numbers during the last 1.5 years I guess everything went well.
- 11:37 PM feature request #7800 (Closed): Parse preliminary RefDetails
- As the import did run and most of the above RefDetails were parsed I think we can close this ticket. However, there a...
- 11:18 PM feature request #9204 (Closed): Update cdmlib and taxeditor dependencies
- I close this ticket as related to v5.18 and open a new one for the remaining (and new) issues
- 11:17 PM task #9359 (Closed): Update cdmlib, taxeditor, cdmserver etc. dependencies
- A lot of version updates and updates to how dependencies are handled in TaxEditor has been done already in #9204.
... - 11:13 PM task #9208 (Closed): Move cdmlib-print and cdmib-remote to taxeditor.printpublisher
- I think we can close this ticket.
There is a very important follow up ticket #9351 (assigned to AK) that needs to ... - 11:04 PM bug #9354 (Feedback): Sorting in distribution editor is broken
- There are still open issues as the comparator does not follow the comparator contract and handling of names with rank...
- 10:55 PM feature request #6076: Specimen biocase search should work on observations
- What needs to be done to close this ticket?
Is it for review? If yes, how to review? Which search did not work? In T... - 10:44 PM feature request #7262 (Closed): add progress monitor to csv print export and cdm light export
- Looks like this is fixed (I did not check for CSV export as it is not so relevant anymore)
- 10:34 PM bug #7013 (Closed): NonUniqueObjectException for setSecundumReferenceForSubtree
- As far as I know and have tried this works now. Also the progress monitor seems to work again. Therefore I close the ...
- 10:06 PM bug #7098 (Closed): reuse name does not work
- The method has been fully refactored in the meanwhile so I guess the above question is not relevant anymore. Closing ...
- 07:41 PM feature request #4867 (Feedback): Add menu item for subtree cloning
- It seems that the menu entry was removed or does not work anymore, even with experimental features being switched on....
- 07:25 PM task #9228: Adaptations to allow editing Centaurea in Flora of Greece
- After running the import it became clear that not reusing names is not a good idea as
* handling name relationship... - 05:52 PM bug #9358: OptionalDataException during HTTP invoker call
- If it is true that this problem occurs client side we should catch the exception in a way that it becomes clear that ...
- 04:28 PM bug #9358: OptionalDataException during HTTP invoker call
- Same issue but slightly different stacktrace
~~~
last remote method : http://api.cybertaxonomy.org:80/euromed/rem... - 04:27 PM bug #9358: OptionalDataException during HTTP invoker call
- ERS: Das könnte sein. Ich habe auf meinem Rechner zuhause manchmal tatsächlich Kapazitätsprobleme - Ich werde das mal...
- 04:20 PM bug #9358: OptionalDataException during HTTP invoker call
- Lazy initializing distributions.
~~~
at org.hibernate.proxy.pojo.javassist.JavassistLazyInitializ... - 04:11 PM bug #9358: OptionalDataException during HTTP invoker call
- ~~~
last remote method : http://api.cybertaxonomy.org:80/euromed/remoting/common.service
last remote request client... - 04:11 PM bug #9358 (New): OptionalDataException during HTTP invoker call
- Note: first issue to solve is catching the exception client side as explained in comment 6 => #9629
The bug in com... - 11:25 AM bug #9142: The Agent search dialog shows duplicated entries
- Andreas Müller wrote:
> Thats what I thought. It is actually not really a wrong implementation of the method but due... - 11:14 AM bug #9142 (Feedback): The Agent search dialog shows duplicated entries
- Thats what I thought. It is actually not really a wrong implementation of the method but due to the above described s...
- 10:54 AM bug #9142 (Resolved): The Agent search dialog shows duplicated entries
- First I thought it was because the search method was called twice but the real cause was the wrong implementation of ...
- 11:11 AM bug #9264: Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- please review
- 10:59 AM bug #9264 (Resolved): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- Applied in changeset commit:taxeditor|d3334540d33466758ed37e2c7648f74f99420f43.
12/17/2020
- 11:49 AM bug #9142 (Feedback): The Agent search dialog shows duplicated entries
- 11:39 AM bug #9142: The Agent search dialog shows duplicated entries
- can you shortly explain what the problem was and why the commit fixes it?
- 11:36 AM bug #9142: The Agent search dialog shows duplicated entries
- Applied in changeset commit:taxeditor|359b77dda6efc328563cfd93e63aee841662b4e7.
- 11:30 AM bug #9142 (Resolved): The Agent search dialog shows duplicated entries
- This should be fixed. Please review.
- 10:34 AM feature request #9337: Open issues for reimplementation of termtree editors
- 16. Add "Open in Vocabulary" to term tree editor context menu; this is generally needed the primary usecase is to all...
- 09:16 AM feature request #9337 (In Progress): Open issues for reimplementation of termtree editors
- 10:10 AM feature request #8289 (Resolved): Add "Open in RefObj view" to term editor context menu
- please review.
- 09:13 AM bug #9344: Datasets in Descriptive Dataset Navigator should be ordered
- please review
- 09:13 AM bug #9344 (Resolved): Datasets in Descriptive Dataset Navigator should be ordered
- Applied in changeset commit:taxeditor|b5f32b5d274ff26e8bf15ed9f42c61f028e79584.
- 08:48 AM bug #9353 (Resolved): Copy & Paste creates dirty data in term trees
- Applied in changeset commit:taxeditor|27ca515332a1068e6f49ccff9a4466bce556a548.
12/15/2020
- 11:36 AM feature request #9338 (Resolved): Restructure term menus
- Both menues have the same structure and also the handling of opening the editors are synchronized.
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