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From 12/06/2020 to 01/04/2021

01/04/2021

07:38 PM Revision 5da100f1 (cdmlib): ref #9366 fix test in TypeDesignationSetManagerTest
Andreas Müller
07:17 PM bug #9366: Specimen type designation with specimen having only collection name but not collection...
Please review Andreas Müller
07:14 PM bug #9366 (Resolved): Specimen type designation with specimen having only collection name but not...
Applied in changeset commit:cdmlib|99d3463856a840dd42c0532791b67b299b7b7fed. Andreas Müller
07:08 PM bug #9366 (Closed): Specimen type designation with specimen having only collection name but not c...
e.g. Scorzonera kurtii Yıld. in Ot Sist. Bot. Dergisi 18(2): 15. 2012 in Cichorieae DB
The holotype collection inf...
Andreas Müller
07:14 PM Revision 99d34638 (cdmlib): fix #9366 add collection name to specimen titleCache if collection co...
Andreas Müller
07:13 PM Revision 960711fc (cdmlib): cleanup
Andreas Müller

12/22/2020

09:09 PM bug #9365 (Closed): Reuse taxon does not work in new Taxon dialogue
partly copied from #5114.
If reuse taxon is selected still a new taxon is created.
Also the secundum field shou...
Andreas Müller
08:52 PM feature request #4896 (Closed): Bulkeditor: deduplication of objects of different type
Generally this works. Open issue is handled in #9361 Andreas Müller
08:37 PM task #9364 (In Progress): Cleanup authors with multiple & and protected names and teams
Andreas Müller
07:29 PM task #9364: Cleanup authors with multiple & and protected names and teams
Protected Teams(nomenclaturalTitle):
AlgaTerra: >14000
Cichorieae: 8487
Cuba: 14
Campanula: 1171
Caryo_amarant...
Andreas Müller
03:56 PM task #9364: Cleanup authors with multiple & and protected names and teams
Protected Names (still without fulltitlecache and authorshipcache):
Bromeliaceae: 584
Cichorieae: 476
Cuba: 567
...
Andreas Müller
03:17 PM task #9364 (Closed): Cleanup authors with multiple & and protected names and teams
(high priority only to first issue as it is related to #2200)
In context of #2200 I already checked names with >1 ...
Andreas Müller
08:16 PM feature request #2200 (Closed): Handle multiple authors for names correctly when caching
This can be closed as it works now as expected. Open data issues are handled in #9364
The only directly related is...
Andreas Müller
10:51 AM Revision dc310f85 (cdmlib): ref #4770, ref #4908, ref #5163 remove commented line as it seems to ...
Andreas Müller
10:10 AM Revision f8fa7762 (cdmlib): ref #4770, ref #4908, ref #5163 try to remove explicit setting of pro...
Andreas Müller
09:59 AM bug #5163 (Closed): Converting persons to team members may result in "-empty team-"
The "empty team" issue has been solved. The handling of team members has been moved to follow up ticket #9363 as it i... Andreas Müller
09:56 AM feature request #9363 (New): Allow to parse the new team when converting person to team
copied from #5163
When converting a person to a team does not get team members by default. We could add a configur...
Andreas Müller
09:48 AM Revision 6057b354 (cdmlib): ref #4770, ref #4908, ref #5163 some finetuning on convertPerson2Team
Andreas Müller

12/21/2020

12:14 AM bug #2578 (Closed): Improve "move synonym"
Now we always move the full homotypical group to the other taxon, so this is fixed.
The check that the synonym is ...
Andreas Müller
12:07 AM Revision 304fcfc8 (cdmlib): ref #4770, ref #4908, ref #5163 assert that team has protected nomenc...
Andreas Müller
11:39 PM bug #9362 (New): Convert Team to Person and vice versa saves immediately
When converting a team to a person or converting a person to a team the operation is immediately executed and not wai... Andreas Müller
11:32 PM feature request #4908 (Closed): adding convert Team to Person and Person to Team to the bulk editor
Open issues fixed or moved to new ticket. Andreas Müller
11:32 PM Revision b07820f4 (taxeditor): ref #4908 adapt error message for MergeException
Andreas Müller
11:31 PM Revision 01f597fe (cdmlib): ref #4770, ref #4908 add test for person is null in person2Team conve...
Andreas Müller
11:27 PM feature request #9361 (New): Give more specific information why person can not be converted to team
copied from #4908 and #4896 (says that current implementation is only a workaround as a suitable return type for isMe... Andreas Müller
11:09 PM Revision 58a9c0ab (cdmlib): ref #4770, ref #4908 handle person is null in person2Team converter
Andreas Müller
10:46 PM feature request #4770 (Closed): Allow convert person to team
the open issue is fixed now. We can close the ticket Andreas Müller
10:45 PM Revision d7943997 (cdmlib): ref #4770 handle unprotected titlecache for person2Team converter and...
Andreas Müller
10:39 PM Revision a7cbfd9c (cdmlib): ref #4770 fix clone for AgentBase.contact
Andreas Müller
10:38 PM Revision f3a14906 (cdmlib): cleanup
Andreas Müller
03:15 PM Revision 2e9c058b (cdmlib): cleanup
Andreas Müller
03:14 PM Revision 2b772077 (cdmlib): ref #4770 fix handling nomenclatural title for convertPerson2Team
Andreas Müller
03:00 PM Revision 94722700 (cdmlib): improve generics for save() method
Andreas Müller
02:59 PM Revision c9b75310 (cdmlib): cleanup
Andreas Müller
01:44 PM Revision 180577bd (taxeditor): ref #4908 adapt German menu label
Andreas Müller
01:36 PM feature request #4769 (Closed): Allow convert team to person
I used this intensively for deduplicating authors in cyprus DB and problems never occured. So I guess we can close th... Andreas Müller
01:26 PM bug #9360 (Feedback): Parsed hybrids can not be persisted
In Flora of Cyprus I tried to persist a hybrid formula (Aegilops biuncialis × geniculata) but got an NPE in TaxonName... Andreas Müller

12/18/2020

11:38 PM feature request #7894 (Closed): [CHECK] Import sourceNumber as Identifier for references
As ERS did not complain about missing numbers during the last 1.5 years I guess everything went well. Andreas Müller
11:37 PM feature request #7800 (Closed): Parse preliminary RefDetails
As the import did run and most of the above RefDetails were parsed I think we can close this ticket. However, there a... Andreas Müller
11:18 PM feature request #9204 (Closed): Update cdmlib and taxeditor dependencies
I close this ticket as related to v5.18 and open a new one for the remaining (and new) issues Andreas Müller
11:17 PM task #9359 (In Progress): Update cdmlib and taxeditor dependencies
A lot of version updates and updates to how dependencies are handled in TaxEditor has been done already in #9204.
...
Andreas Müller
11:13 PM task #9208 (Closed): Move cdmlib-print and cdmib-remote to taxeditor.printpublisher
I think we can close this ticket.
There is a very important follow up ticket #9351 (assigned to AK) that needs to ...
Andreas Müller
11:04 PM bug #9354 (Feedback): Sorting in distribution editor is broken
There are still open issues as the comparator does not follow the comparator contract and handling of names with rank... Andreas Müller
10:55 PM feature request #6076: Specimen biocase search should work on observations
What needs to be done to close this ticket?
Is it for review? If yes, how to review? Which search did not work? In T...
Andreas Müller
10:44 PM feature request #7262 (Closed): add progress monitor to csv print export and cdm light export
Looks like this is fixed (I did not check for CSV export as it is not so relevant anymore) Andreas Müller
10:34 PM bug #7013 (Closed): NonUniqueObjectException for setSecundumReferenceForSubtree
As far as I know and have tried this works now. Also the progress monitor seems to work again. Therefore I close the ... Andreas Müller
10:33 PM Revision 2f7a80f7 (taxeditor): ref #9349 adapt TaxEditor to method move for cloneSubtree - try t...
Andreas Müller
10:26 PM Revision 863c4112 (taxeditor): ref #9349 adapt TaxEditor to method move for cloneSubtree
Andreas Müller
10:25 PM Revision 14ac3831 (taxeditor): cleanup
Andreas Müller
10:06 PM bug #7098 (Closed): reuse name does not work
The method has been fully refactored in the meanwhile so I guess the above question is not relevant anymore. Closing ... Andreas Müller
09:57 PM Revision cd0bfb6e (cdmlib): try to fix failing test in suite (cont.)
Andreas Müller
09:32 PM Revision 5c696121 (cdmlib): ref #9349 add doRecursive to subtreeCloning
Andreas Müller
09:29 PM Revision 71f6ac57 (cdmlib): cleanup
Andreas Müller
09:29 PM Revision d1198615 (cdmlib): try to fix failing test in suite (cont.)
Andreas Müller
08:51 PM Revision 34140e24 (cdmlib): ref #9349 rename newClassificationName method (cont.)
Andreas Müller
08:48 PM Revision 1b873fea (cdmlib): try to fix failing test in suite
Andreas Müller
08:47 PM Revision 0120e292 (cdmlib): ref #9349 rename newClassificationName method
Andreas Müller
08:47 PM Revision 60617880 (cdmlib): cleanup
Andreas Müller
08:37 PM Revision 2da76eb1 (cdmlib): ref #9349 fix test for nomenclaturalStatus in name cloning
Andreas Müller
08:20 PM Revision e9612b75 (cdmlib): ref #9349 deprecate setReuseNames(false)
Andreas Müller
08:19 PM Revision c5bb8419 (cdmlib): ref #9349 move cloneSubtree to taxonNodeService
Andreas Müller
08:18 PM Revision 77c5bf22 (cdmlib): remove deprecated methods from classificationService
Andreas Müller
08:17 PM Revision 6077af92 (cdmlib): cleanup
Andreas Müller
07:41 PM feature request #4867 (Feedback): Add menu item for subtree cloning
It seems that the menu entry was removed or does not work anymore, even with experimental features being switched on.... Andreas Müller
07:25 PM task #9228: Adaptations to allow editing Centaurea in Flora of Greece
After running the import it became clear that not reusing names is not a good idea as
* handling name relationship...
Andreas Müller
07:03 PM Revision dcd42a41 (cdmlib): ref #9349 improve name cloning (including documentation as name cloni...
Andreas Müller
05:52 PM bug #9358: OptionalDataException during HTTP invoker call
If it is true that this problem occurs client side we should catch the exception in a way that it becomes clear that ... Andreas Müller
04:28 PM bug #9358: OptionalDataException during HTTP invoker call
Same issue but slightly different stacktrace
~~~
last remote method : http://api.cybertaxonomy.org:80/euromed/rem...
Andreas Müller
04:27 PM bug #9358: OptionalDataException during HTTP invoker call
ERS: Das könnte sein. Ich habe auf meinem Rechner zuhause manchmal tatsächlich Kapazitätsprobleme - Ich werde das mal... Andreas Müller
04:20 PM bug #9358: OptionalDataException during HTTP invoker call
Lazy initializing distributions.
~~~
at org.hibernate.proxy.pojo.javassist.JavassistLazyInitializ...
Andreas Müller
04:11 PM bug #9358: OptionalDataException during HTTP invoker call
~~~
last remote method : http://api.cybertaxonomy.org:80/euromed/remoting/common.service
last remote request client...
Andreas Müller
04:11 PM bug #9358 (New): OptionalDataException during HTTP invoker call
Note: first issue to solve is catching the exception client side as explained in comment 6 => #9629
The bug in com...
Andreas Müller
12:02 PM Revision 239cf764 (cdmlib): cleanup
Andreas Müller
12:01 PM Revision 1b50bc76 (cdmlib): move model comparators to own package
Andreas Müller
11:25 AM bug #9142: The Agent search dialog shows duplicated entries
Andreas Müller wrote:
> Thats what I thought. It is actually not really a wrong implementation of the method but due...
Katja Luther
11:14 AM bug #9142 (Feedback): The Agent search dialog shows duplicated entries
Thats what I thought. It is actually not really a wrong implementation of the method but due to the above described s... Andreas Müller
10:54 AM bug #9142 (Resolved): The Agent search dialog shows duplicated entries
First I thought it was because the search method was called twice but the real cause was the wrong implementation of ... Katja Luther
11:24 AM Revision 84e04ed3 (cdmlib): ref #9142: use clazz for FROM statement in getUuidAndAbbrevTitleCache...
Katja Luther
11:11 AM bug #9264: Flag for toggle button for linking taxon with navigator looses/switch value without cl...
please review Katja Luther
10:59 AM bug #9264 (Resolved): Flag for toggle button for linking taxon with navigator looses/switch value...
Applied in changeset commit:taxeditor|d3334540d33466758ed37e2c7648f74f99420f43. Katja Luther
10:50 AM Revision f0cf9026 (cdmlib): ref #9142: fix getUuidAndAbbrevTitleCache for agents
Katja Luther
10:18 AM Revision d3334540 (taxeditor): fix #9264: use eventbus for updating link with taxon
Katja Luther

12/17/2020

08:11 PM Revision b7f8c9d4 (taxeditor): Merge branch 'hotfix/5.18.2'
jenkins
07:53 PM Revision 34753cbb (taxeditor): remove cdmlib-remote-webapp.war from git in hotfix branch
(cherry picked from commit e8d037bd184f407b89f09df7d93155119480d7b1) Andreas Müller
07:52 PM Revision 840605a4 (taxeditor): fix NPE for cloned lectotype typedesignations
(cherry picked from commit 11c7cb1711a7ed2dc828b81318fcaf34e34a3ef9) Katja Luther
07:14 PM Revision 45c8cb20 (taxeditor): Updated version in pom / project files to taxeditor version : 5.18...
jenkins
04:08 PM Revision e8d037bd (taxeditor): remove cdmlib-remote-webapp.war from git in hotfix branch
Andreas Müller
03:50 PM Revision 5b06a013 (taxeditor): Merge branch 'hotfix/5.18.1'
root
03:40 PM Revision 7bc7988e (taxeditor): remove cdmlib-remote-webapp.war from git
Andreas Müller
11:49 AM bug #9142 (Feedback): The Agent search dialog shows duplicated entries
Andreas Müller
11:39 AM bug #9142: The Agent search dialog shows duplicated entries
can you shortly explain what the problem was and why the commit fixes it? Andreas Müller
11:36 AM bug #9142: The Agent search dialog shows duplicated entries
Applied in changeset commit:taxeditor|359b77dda6efc328563cfd93e63aee841662b4e7. Katja Luther
11:30 AM bug #9142 (Resolved): The Agent search dialog shows duplicated entries
This should be fixed. Please review. Katja Luther
11:35 AM Revision 359b77dd (taxeditor): fix #9142: fix doubled entries in agent selection dialog
Katja Luther
10:35 AM Revision 59066f6b (taxeditor): adapt SpringSource GA Repository to https
Andreas Müller
10:34 AM feature request #9337: Open issues for reimplementation of termtree editors
16. Add "Open in Vocabulary" to term tree editor context menu; this is generally needed the primary usecase is to all... Katja Luther
09:16 AM feature request #9337 (In Progress): Open issues for reimplementation of termtree editors
Katja Luther
10:10 AM feature request #8289 (Resolved): Add "Open in RefObj view" to term editor context menu
please review. Katja Luther
10:09 AM Revision dc2e648b (taxeditor): ref #8289: add open in to term editor context menu
Katja Luther
09:13 AM bug #9344: Datasets in Descriptive Dataset Navigator should be ordered
please review Katja Luther
09:13 AM bug #9344 (Resolved): Datasets in Descriptive Dataset Navigator should be ordered
Applied in changeset commit:taxeditor|b5f32b5d274ff26e8bf15ed9f42c61f028e79584. Katja Luther
09:13 AM Revision b5f32b5d (taxeditor): fix #9344: add comparator to descriptive dataset navigator
Katja Luther
08:48 AM bug #9353 (Resolved): Copy & Paste creates dirty data in term trees
Applied in changeset commit:taxeditor|27ca515332a1068e6f49ccff9a4466bce556a548. Katja Luther
08:48 AM Revision 27ca5153 (taxeditor): fix #9353: fix c&p in term trees
Katja Luther

12/16/2020

04:29 PM Revision 9c9bb6b3 (taxeditor): remove doubled is
Katja Luther
04:17 PM Revision 63fd9baa (taxeditor): rename labels for DDS navigator
Katja Luther
04:13 PM Revision c34d4827 (taxeditor): open in of nomencl.source for the sourced name
Katja Luther
03:16 PM Revision 25cc3cf4 (taxeditor): adapt DescriptionHelper for refObjects description of nomclat. sou...
Katja Luther
03:02 PM Revision b63ed015 (taxeditor): fix NPE for cloned lectotype typedesignations
Katja Luther
03:01 PM Revision 11c7cb17 (taxeditor): fix NPE for cloned lectotype typedesignations
Katja Luther
09:46 AM Revision 4e3c1b39 (taxeditor): remove error message for MAN without sec
Katja Luther
09:44 AM Revision cca35f36 (taxeditor): do not expand the server side preferences
Katja Luther

12/15/2020

12:43 PM Revision ea6ec182 (taxeditor): ref #9337: remove obsolete part descriptions
Katja Luther
12:40 PM Revision f6ba2ccb (taxeditor): ref 9337: rename all termtree related classes
Katja Luther
11:36 AM feature request #9338 (Resolved): Restructure term menus
Both menues have the same structure and also the handling of opening the editors are synchronized. Katja Luther
11:33 AM Revision 22ac94a9 (taxeditor): ref #9338: restructure term menues and adapt handling
Katja Luther

12/14/2020

10:44 AM Revision 38018d82 (cdmlib): fix import of dna data with different provider software version
Katja Luther

12/11/2020

11:13 AM Revision 2cb343b3 (taxeditor): adapt path to cdmlib-remote-webapp.war from webapp to local
Andreas Müller
10:57 AM Revision 849c20bf (taxeditor): fix cdmlib-print and cdmlib-remote for hotfix 5.18.1
Andreas Müller
10:02 AM Revision 56cf64f7 (taxeditor): ref #9356: hotfix solution
Katja Luther
09:48 AM Revision 40d48f6f (taxeditor): ref #9356: hotfix solution
Katja Luther
08:20 AM bug #9357 (New): Advanced search shows selection for all classification even if only 1 classifica...
In the flora of Greece dataportaal only the classification "Vascualar plants of Greece" should be shown
![](pictur...
Andreas Müller

12/10/2020

10:41 PM Revision 51b088c1 (cdmlib-apps): minor
Andreas Müller
10:41 PM Revision b8ddc6c3 (cdmlib-apps): update cdmlib-app to v5.19.0
Andreas Müller
03:29 PM bug #9356 (In Progress): Comparison method violates its general contract for SourceComparator and...
Andreas Müller
02:02 PM bug #9356 (Closed): Comparison method violates its general contract for SourceComparator and Type...
There are two comparators violating the contract: SourceComparator in taxeditor and typeDesignationComparator in cdml... Katja Luther
01:26 PM bug #9350 (Resolved): Create new taxonnode ignores the publish flag
yes, this is resolved and the workaround removed. Katja Luther
12:51 PM bug #9350 (In Progress): Create new taxonnode ignores the publish flag
is this resolved and open for review (the develop version)? Andreas Müller
01:21 PM Revision eb3f9882 (taxeditor): ref #9350: fix is implemented in cdmlib therefore we can remove th...
Katja Luther
12:59 PM bug #9355 (New): Selection dialog for secundum reference does not work correctly
mail NK:
ich kann keine neue sec. Referenz mehr auswählen, ohne vorher die bereits vorhandene zu löschen. Ich bin ...
Katja Luther
11:32 AM Revision a3d9156f (taxeditor): cleanup
Andreas Müller
11:28 AM Revision 9360e6f2 (taxeditor): cleanup
Andreas Müller

12/09/2020

04:06 PM bug #9354 (Resolved): Sorting in distribution editor is broken
fixed for hotfix 5.18.1 Katja Luther
04:05 PM bug #9354 (Closed): Sorting in distribution editor is broken
The comparator for sorting the taxa in distribution editor does not work correctly. Katja Luther
04:04 PM bug #9353 (Closed): Copy & Paste creates dirty data in term trees
It was missed to implement copy & paste for the dto implementation of the term tree editors, the menu items are still... Katja Luther
10:24 AM Revision 6b6ae919 (taxeditor): fix distribution editor comparator
Katja Luther
10:02 AM Revision f34ce847 (taxeditor): fix distribution editor comparator
Katja Luther

12/08/2020

01:51 PM bug #9352 (New): Missing order in quantitative data wizard
mail AM:
bei Eingabe von QantData scheint mir die Reihenfolge der Felder etwas beliebig. Kann man das evtl. fest v...
Katja Luther
12:55 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
WGB:
die Lösung für dieses Ticket hängt von der breiteren Diskussion dieser Kategorien und ihrer Verbindung mit de...
Andreas Müller
12:52 PM bug #8971: Long running tasks in taxon navigator should disable the navigator
WGB:
hier nur nochmal die Bestätigung, dass das ein an verschiedenen Stellen auftretendes Problem ist, besonders, ...
Andreas Müller
10:56 AM Revision 3c793992 (taxeditor): ref #9199: fix missing handling of name in source in nomenclatural...
Katja Luther
10:52 AM Revision af6adc60 (taxeditor): ref #9199: fix missing handling of name in source in nomenclatural...
Katja Luther
08:37 AM bug #9351 (Closed): Include new locations for cdmlib-print and cdmlib-remote in jenkins release s...
cdmlib-print and cdmlib-remote are now only available in taxeditor.printpublisher.
Therefore the according links t...
Andreas Müller

12/07/2020

11:16 PM Revision 12490f6a (taxeditor): cleanup
Andreas Müller
11:16 PM Revision e62fc33a (taxeditor): remove cdmlib-remote from local (to test if it is needed at all th...
Andreas Müller
11:16 PM Revision b67648cb (taxeditor): upgrade cdmlib-print and cdmlib-remote to 5.19-Snapshot in printpu...
Andreas Müller
11:16 PM Revision b4221bf3 (taxeditor): again add remote-webapp-war to gitignore
Andreas Müller
12:15 PM bug #9350: Create new taxonnode ignores the publish flag
implemented a workaround for hotfix 5.18.1 in editor, this should be removed for the next release. The correct fix co... Katja Luther
12:12 PM bug #9350 (Closed): Create new taxonnode ignores the publish flag
Creating a new taxon node and do not set the publish flag is not taken for the newly created taxon. Katja Luther
12:09 PM Revision d4de1459 (taxeditor): workaround for missing publish flag in newTaxonNode
Katja Luther
12:06 PM Revision a3509fe0 (taxeditor): workaround for missing publish flag in newTaxonNode
Katja Luther
11:55 AM Revision ac6fd8fc (cdmlib): fix missing publish flag in createTaxonnode
Katja Luther
 

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