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From 11/18/2020 to 12/17/2020

12/17/2020

11:49 AM bug #9142 (Feedback): The Agent search dialog shows duplicated entries
Andreas Müller
11:39 AM bug #9142: The Agent search dialog shows duplicated entries
can you shortly explain what the problem was and why the commit fixes it? Andreas Müller
11:36 AM bug #9142: The Agent search dialog shows duplicated entries
Applied in changeset commit:taxeditor|359b77dda6efc328563cfd93e63aee841662b4e7. Katja Luther
11:30 AM bug #9142 (Resolved): The Agent search dialog shows duplicated entries
This should be fixed. Please review. Katja Luther
10:34 AM feature request #9337: Open issues for reimplementation of termtree editors
16. Add "Open in Vocabulary" to term tree editor context menu; this is generally needed the primary usecase is to all... Katja Luther
09:16 AM feature request #9337 (In Progress): Open issues for reimplementation of termtree editors
Katja Luther
10:10 AM feature request #8289 (Resolved): Add "Open in RefObj view" to term editor context menu
please review. Katja Luther
09:13 AM bug #9344: Datasets in Descriptive Dataset Navigator should be ordered
please review Katja Luther
09:13 AM bug #9344 (Resolved): Datasets in Descriptive Dataset Navigator should be ordered
Applied in changeset commit:taxeditor|b5f32b5d274ff26e8bf15ed9f42c61f028e79584. Katja Luther
08:48 AM bug #9353 (Resolved): Copy & Paste creates dirty data in term trees
Applied in changeset commit:taxeditor|27ca515332a1068e6f49ccff9a4466bce556a548. Katja Luther

12/15/2020

11:36 AM feature request #9338 (Resolved): Restructure term menus
Both menues have the same structure and also the handling of opening the editors are synchronized. Katja Luther

12/11/2020

08:20 AM bug #9357 (New): Advanced search shows selection for all classification even if only 1 classification is available for a dataportal
In the flora of Greece dataportaal only the classification "Vascualar plants of Greece" should be shown
![](pictur...
Andreas Müller

12/10/2020

03:29 PM bug #9356 (In Progress): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
Andreas Müller
02:02 PM bug #9356 (Closed): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
There are two comparators violating the contract: SourceComparator in taxeditor and typeDesignationComparator in cdml... Katja Luther
01:26 PM bug #9350 (Resolved): Create new taxonnode ignores the publish flag
yes, this is resolved and the workaround removed. Katja Luther
12:51 PM bug #9350 (In Progress): Create new taxonnode ignores the publish flag
is this resolved and open for review (the develop version)? Andreas Müller
12:59 PM bug #9355 (New): Selection dialog for secundum reference does not work correctly
mail NK:
ich kann keine neue sec. Referenz mehr auswählen, ohne vorher die bereits vorhandene zu löschen. Ich bin ...
Katja Luther

12/09/2020

04:06 PM bug #9354 (Resolved): Sorting in distribution editor is broken
fixed for hotfix 5.18.1 Katja Luther
04:05 PM bug #9354 (Closed): Sorting in distribution editor is broken
The comparator for sorting the taxa in distribution editor does not work correctly. Katja Luther
04:04 PM bug #9353 (Closed): Copy & Paste creates dirty data in term trees
It was missed to implement copy & paste for the dto implementation of the term tree editors, the menu items are still... Katja Luther

12/08/2020

01:51 PM bug #9352 (New): Missing order in quantitative data wizard
mail AM:
bei Eingabe von QantData scheint mir die Reihenfolge der Felder etwas beliebig. Kann man das evtl. fest v...
Katja Luther
12:55 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
WGB:
die Lösung für dieses Ticket hängt von der breiteren Diskussion dieser Kategorien und ihrer Verbindung mit de...
Andreas Müller
12:52 PM bug #8971: Long running tasks in taxon navigator should disable the navigator
WGB:
hier nur nochmal die Bestätigung, dass das ein an verschiedenen Stellen auftretendes Problem ist, besonders, ...
Andreas Müller
08:37 AM bug #9351 (Closed): Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
cdmlib-print and cdmlib-remote are now only available in taxeditor.printpublisher.
Therefore the according links t...
Andreas Müller

12/07/2020

12:15 PM bug #9350: Create new taxonnode ignores the publish flag
implemented a workaround for hotfix 5.18.1 in editor, this should be removed for the next release. The correct fix co... Katja Luther
12:12 PM bug #9350 (Closed): Create new taxonnode ignores the publish flag
Creating a new taxon node and do not set the publish flag is not taken for the newly created taxon. Katja Luther

12/05/2020

01:43 PM bug #6488 (Closed): Always show some label text in the specimen editor even when no information is available
This seems to be fixed as it did not appear anymore. Open new ticket if something similar happens again. Andreas Müller
01:42 PM bug #4330: Correct handling of nomenclatural inreferences of Journals
not yet fixed therefore I move it to current milestone Andreas Müller
01:39 PM bug #1924: CIHORIEAE in-references in Footnotes
This is still open therefore I move it to current milestone Andreas Müller
01:38 PM bug #2969: Correct formatting for bibliographic references
This is not yet fixed therefore I move it to current milestone. Andreas Müller
01:27 PM feature request #7334 (Closed): Make pro parte and partial synonyms real concept relationships
This is in use now for longer time and no errors were reported, so I guess we can close it. Andreas Müller
01:22 PM feature request #5396: User interface to create a Remote Source
moving all open remoting 6.0 tickets to Unassigned Andreas Müller
01:21 PM feature request #5366: Implement less strict check for compatibility between taxeditor and target cdmserver
moving all open remoting 6.0 tickets to Unassigned Andreas Müller
01:20 PM feature request #5356: Handle exceptions which require reconnect
moving this open remoting 6.0 ticket to current milestone to decide what to do with it.
Is the above mentioned sol...
Andreas Müller
01:18 PM feature request #5020: [MASTER] Refactor / Redesign
moving this open remoting 6.0 ticket to current milestone as we have to decide what to do with it (to me it is unclear) Andreas Müller
01:16 PM feature request #4931: [Master] Fix Performance Issues
moving this open remoting 6.0 tickets to Reviewed Next Major Release as subtickets are also there Andreas Müller
01:11 PM feature request #4930: Implement Tests for Bulk Editor
moving all open remoting 6.0 tickets to Unassigned Andreas Müller
01:11 PM feature request #4929: Implement Tests for Polytomous Key Node Editor
moving all open remoting 6.0 tickets to Unassigned Andreas Müller
01:10 PM feature request #4074: [MASTER] Setup testing framework for remoting
moving all open remoting 6.0 tickets to Unassigned Andreas Müller
01:09 PM feature request #4021: H2 running in Server mode
moving all open remoting 6.0 tickets to Unassigned Andreas Müller
12:57 PM feature request #5794 (Resolved): Move other invalid names to the end
Needs to be checked against new implementations within #9272 and #9282 , does comparator work accordingly. Also add d... Andreas Müller
12:51 PM bug #9311 (Closed): Update some (abbrev) labels for nomenclatural status types
Andreas Müller

12/04/2020

04:47 PM bug #9347: LIE during ABCD file import
This should be fixed soon. Andreas Müller
03:32 PM bug #9347 (New): LIE during ABCD file import
File imported: attachment:Kurs-19_20_Herbar.xml
~~~~
++++++++Import Report+++++++++
Specimens created: 0
Skippe...
Andreas Kohlbecker
04:35 PM feature request #4866 (Closed): Implement clone method for complete classifications
This is implemented so far (tested for Centaurea/FoG on command line) with some open issues. Andreas Müller
04:33 PM bug #9349 (New): Open issues for classification cloning
* "Import Result" including count cloned taxa, synonyms, names, ... (do we need to merge UpdateResult and ImportResul... Andreas Müller
04:21 PM feature request #9320 (In Progress): Move additional publication information to nomenclatural source
Andreas Müller
04:11 PM task #9315 (In Progress): Remove old single source citation and microCitation columns
Andreas Müller
04:11 PM feature request #9327 (In Progress): Make taxon secundum reference an original source
Andreas Müller
04:10 PM bug #8141: explicitSource as additional attribute for TypeDesignationStatus
not so high priority as long as TypeDesignationStatus vocabularies can not be edited Andreas Müller
03:50 PM bug #9348 (New): Specimen online import dialog issues
1. The dialog has extrem width (at least in the KDE desktop environment) this seems to come from the widht of the com... Andreas Kohlbecker
03:00 PM bug #9264: Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
I hope this is fast to fix, therefore I move it to 5.19 Andreas Müller
02:55 PM feature request #9192: Layout issues for source in taxonnode details
If close, please move it back to 5.18 Andreas Müller
02:55 PM feature request #9192: Layout issues for source in taxonnode details
This to me looks fine now. Maybe we could have a bit more space above "Related persons or teams if the "more" section... Andreas Müller
02:48 PM bug #9073: Configuring the matrix view throws HTTP invoker exception
When testing this I got another exception (NPE) during save:
~~~
last remote method : http://test.e-taxonomy.eu:8...
Andreas Müller
02:45 PM bug #9245 (Feedback): Creating derived units from existing derived unit is not possible in specimen tree editor
This to me seems to be fixed. Katja can you check, and if true add commit and correct target version? Andreas Müller
02:23 PM bug #9346: Adding specimen to character matrix fails sometimes
The Problem occurred with unit ID 433 in rem_conf_am (Dianthella test Node; Germany, Berlin (MC 67)). Andreas Müller
01:32 PM bug #9346 (Closed): Adding specimen to character matrix fails sometimes
There are two issues:
1. the SourceDTO is not serializable
2. LIE
~~~ text
ENTRY org.eclipse.e4.ui.workbench...
Katja Luther
02:10 PM bug #8660 (Duplicate): Generic menu creation for Term trees
I think this is a duplicate for #9338 though the focus how to implement it has changed. Andreas Müller
02:09 PM feature request #9338: Restructure term menus
This ticket seems to be somehow contradictory to #8660. However, currently I think a menu not automatically created i... Andreas Müller
12:58 PM bug #9345 (New): Prevent or warn about unparsable values when entering quantitative data
Currently when entering e.g. "2,3" and pressing OK, the data is not stored but also no warning is given that it is p... Andreas Müller
11:48 AM bug #9344 (Closed): Datasets in Descriptive Dataset Navigator should be ordered
... alphabetically
Currently they seem to be unordered.
Andreas Müller
11:09 AM feature request #8554 (Feedback): Allow drag&drop from character into FeatureTrees
this is probably a duplicate for #8774/#9337 (issues 4 and 5)? Andreas Müller
10:03 AM bug #7990 (Closed): Moving a feature via d&d does not make the Feature Tree Editor dirty
ups no, this issue is solved with the new implementation. Katja Luther
10:01 AM bug #7990 (Feedback): Moving a feature via d&d does not make the Feature Tree Editor dirty
Is this still an open issue with the new term tree implementation? If not we should close it as works for me or as du... Andreas Müller

12/03/2020

08:28 PM bug #8774 (Closed): Reimplement term tree editors to implement the general save strategy
I think we can close this ticket. All remaining issues will go into the follow up ticket #9337 Andreas Müller
02:00 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
I move the expand of the tree after saving to the follow up ticket. Katja Luther
12:35 PM bug #8774: Reimplement term tree editors to implement the general save strategy
The saving of the termtree editor before adding a new term is not necessary anymore, only moving a new term is not po... Katja Luther
11:26 AM bug #8774: Reimplement term tree editors to implement the general save strategy
D&D on itself makes a node disappear and saving it creates a stackOverflow Andreas Müller
11:23 AM bug #8774: Reimplement term tree editors to implement the general save strategy
The tree should stay expanded when saving Andreas Müller
08:26 PM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Character Editor
I tested again. It seems to work if the editing of the structure tree is done in the same TaxEditor instance or if th... Andreas Müller
08:00 PM bug #9343 (Duplicate): Open issues for DTO based term tree & character editor
upps, this is a duplicate of course for #9337. I moved all issues there Andreas Müller
07:28 PM bug #9343 (Duplicate): Open issues for DTO based term tree & character editor
copied from #8774
* tree collapses sometimes after save
* d&d from vocabulary editor to character editor not yet ...
Andreas Müller
06:30 PM bug #9267 (Closed): No sec reference for move change Synonym to accepted Taxon
First version was implemented now.
I think we can close this ticket. All the rest will be done in the follow up ti...
Andreas Müller
03:32 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
Now there is only a statement saying "The new taxon and the parent does not have the same secundum reference". But yo... Andreas Müller
01:55 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
A "hot fix" version is implemented now. The new accepted taxon keeps the secundum reference of the former synonym and... Katja Luther
06:14 PM feature request #8529: [DISCUSS]Display of aggregated descriptions
Norbert, can you have a look on this ticket if you remember what was meant? Andreas Müller
06:09 PM bug #8874: move taxon is reverted when taxon is edited afterwards
Katja, do you remember why this ticket was assigned to me? Simply a mistake?
Can we reproduce this behavior?
Andreas Müller
05:52 PM bug #8547 (Closed): Default type of a newly created inReference should depend on the type of the reference
This is fixed as far as now by default the most likely reference type is now prefilled for inreferences.
There is ...
Andreas Müller
02:28 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
ReferenceType.inReferenceContraints() is a list now, so the first element in the list is the default preferred type. ... Andreas Müller
05:48 PM feature request #9342 (New): Only show specific reference types for inreferences
copied from #8547
RefereceType.inReferenceContraints() returns the possible values available for an inreference. T...
Andreas Müller
05:39 PM bug #9199 (Closed): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Works as expected. We can close this ticket. Andreas Müller
03:31 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > ~~Another minor issue: could we move...
Katja Luther
03:13 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Andreas Müller
03:09 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Andreas Müller wrote:
> Andreas Müller wrote:
> > ~~Another minor issue: could we move "Original Information" above...
Andreas Müller
01:56 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
this should be solved with last commit. Katja Luther
05:21 PM task #9189 (Closed): Move datasource view to taxeditor.local
This works now but there are still open issues to solve before all cdmlib-db stuff can fully migrate to taxeditor.loc... Andreas Müller
05:20 PM feature request #9341 (New): Move local datasource access fully to taxeditor.local
The datasource view has been migrated to taxeditor.local in #9189.
However, there is still a dependency to cdmlib-...
Andreas Müller
03:36 PM feature request #9340 (Closed): Workflow support for secundum handling when making synonym a new accepted taxon
copied from #9267
(1) check above ticket for remaining issues. Most important is to have a preference to handle th...
Andreas Müller
01:55 PM task #6714: Create 001-cdm.h2.sql automatically
This is more or less done in 5.18 except for the copying issue Andreas Müller

12/02/2020

07:53 PM bug #8774: Reimplement term tree editors to implement the general save strategy
The above also happens when D&D a NamedAreae from NamedArea Term Editor to NamedArea Term Tree Editor, so it is proba... Andreas Müller
07:51 PM bug #8774: Reimplement term tree editors to implement the general save strategy
D&D a NamedArea term from a NamedArea Tree Term Editor to an Rank Tree Term Editor leeds to the below NPE:
D&D wit...
Andreas Müller
07:47 PM bug #8774: Reimplement term tree editors to implement the general save strategy
D&d a term onto its own child makes both disappear in the UI. Saving this is one way to create the above StackOverflo... Andreas Müller
07:38 PM bug #8774: Reimplement term tree editors to implement the general save strategy
after moving some ranks around in the term editor I got the following when trying to save:
~~~
last remote method...
Andreas Müller
01:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy
The text for duplicate recognition should be improved from
This term tree does not allow duplicates and there exi...
Andreas Müller
01:00 PM bug #8774: Reimplement term tree editors to implement the general save strategy
When changing a tree by e.g. changing a flag (order relevant) and then adding a term a message comes that the tree ne... Andreas Müller
12:20 PM bug #8774: Reimplement term tree editors to implement the general save strategy
... this happens whereever I try to move the 3rd rank from position of being child of 2nd rank (but in the same sessi... Andreas Müller
12:17 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
AOOB with a rank tree with 3 top level children, first I moved 3rd rank to be child of 2nd rank, than I tried to move... Andreas Müller
11:47 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
I think all remaining issues are solved or moved to new tickets. Katja Luther
07:00 PM bug #9322 (Closed): Remove invalid designation taxon relationship
Andreas Müller
06:50 PM feature request #9282 (Closed): Add nomenclatural standing
Andreas Müller
05:13 PM bug #9257: revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > Hi Katja & AM, the current implementation partially filters for...
Andreas Müller
04:31 PM feature request #9190 (In Progress): Make taxeditor.local a loadable plugin not installed by default
Andreas Müller
04:30 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
... looks like the error appears at different places depending on the type field that you enter data in Andreas Müller
04:28 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Also the NPE still exists, but with a different row number:
~~~
last remote method : http://test.e-taxonomy.eu:80...
Andreas Müller
04:25 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Andreas Müller wrote:
> ~~Another minor issue: could we move "Original Information" above ID Namespace and ID in Sou...
Andreas Müller
04:23 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Andreas Müller wrote:
> Sometimes the nomenclatural source still shows "No external link" yet instead of no protolog...
Andreas Müller
11:45 AM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
please review. Katja Luther
11:42 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Andreas Müller wrote:
> NPE when editing a lectotype source
>
> ~~~
> last remote method : http://test.e-taxonom...
Katja Luther
02:42 PM task #9189: Move datasource view to taxeditor.local
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > The "New"...
Andreas Müller
02:05 PM bug #6356 (Closed): taxontree sort order as in editor
Norbert wrote: "alles klar, gelöst!" Andreas Kohlbecker
01:54 PM feature request #8308 (Worksforme): Extend specimen type designation editor
Andreas Kohlbecker
01:45 PM feature request #8308: Extend specimen type designation editor
This ticket can be set to "worksforme".
The image issue raised is not what the screenshot here shows. I will comment...
Wolf-Henning Kusber
01:27 PM bug #9313 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor
Andreas Kohlbecker
01:04 PM bug #9313: LazyInitializationException (LIE) in TaxonNamePopupEditor
no problems with existing names (orthogr. variant, corrected name, species name, genus name) anymore. Ticket can be c... Wolf-Henning Kusber
12:30 PM bug #8776 (In Progress): Open issues for TermCollection.allowDuplicates handling in TaxEditor
Andreas Müller
09:07 AM feature request #9339: Improve warning message if save is necessary
We should do this soon Andreas Müller
08:22 AM feature request #9339 (New): Improve warning message if save is necessary
The actual warning message "The editor needs to be saved..." is misleading because normally only the active window is... Katja Luther

12/01/2020

07:02 PM feature request #4866: Implement clone method for complete classifications
this is a blocker for #9228 Andreas Müller
04:43 PM task #9189: Move datasource view to taxeditor.local
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> and the classLoader is EquinoxClassLoader
...
Andreas Müller
02:42 PM task #9189: Move datasource view to taxeditor.local
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The finish button does not seem to wor...
Katja Luther
02:31 PM task #9189: Move datasource view to taxeditor.local
Katja Luther wrote:
> Andreas Müller wrote:
> > The finish button does not seem to work anymore (when using clone)....
Andreas Müller
12:55 PM task #9189: Move datasource view to taxeditor.local
Katja Luther wrote:
> Andreas Müller wrote:
> > The finish button does not seem to work anymore (when using clone)....
Andreas Müller
12:00 PM task #9189: Move datasource view to taxeditor.local
Andreas Müller wrote:
> The finish button does not seem to work anymore (when using clone).
This is caused by jav...
Katja Luther
11:50 AM task #9189: Move datasource view to taxeditor.local
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The "New" button is missing.
> >
> ...
Katja Luther
11:49 AM task #9189: Move datasource view to taxeditor.local
Andreas Müller wrote:
> Entering a name (or other information) now is very fast. It was slow before because I think ...
Katja Luther
11:37 AM task #9189: Move datasource view to taxeditor.local
Katja Luther wrote:
> Andreas Müller wrote:
> > The "New" button is missing.
>
> Shouldn't the new button should...
Andreas Müller
11:26 AM task #9189: Move datasource view to taxeditor.local
Entering a name (or other information) now is very fast. It was slow before because I think there was always done som... Andreas Müller
11:20 AM task #9189: Move datasource view to taxeditor.local
Andreas Müller wrote:
> The "New" button is missing.
Shouldn't the new button should be removed in #9119?
Katja Luther
11:17 AM task #9189: Move datasource view to taxeditor.local
The finish button does not seem to work anymore (when using clone). Andreas Müller
11:14 AM task #9189 (Feedback): Move datasource view to taxeditor.local
The "New" button is missing. Andreas Müller
11:12 AM task #9189: Move datasource view to taxeditor.local
Title translations are missing:
![](picture929-1.png)
Andreas Müller
04:39 PM bug #8851: display of name facts not appropriate in all cases
Walter, can you have a look after the next release, if this is now all correct? Andreas Müller
02:16 PM bug #8851 (Closed): display of name facts not appropriate in all cases
Andreas Kohlbecker
04:12 PM task #9206 (Closed): Solve cglib vs. cglib-nodep
the dependency to `hibernate-cglib-repack` was introduced by ben on Wed Feb 25 2009.
I don't see any further need f...
Andreas Kohlbecker
03:55 PM task #9219: Revert: requests with %2F in URL are rejected by apache
to be done right after the release 5.18 is deployed to our servers Andreas Kohlbecker
03:50 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
updating description with latest TODOs Andreas Kohlbecker
03:47 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
.. and another one:
TODO: The methods `OccurrenceServiceImpl._findFieldUnitDTO` and `OccurrenceServiceImpl.findFie...
Andreas Kohlbecker
03:07 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
more TODO:
revise commented code and clean up
Andreas Kohlbecker
03:41 PM task #8458 (Closed): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
Andreas Kohlbecker
03:41 PM task #8458 (Resolved): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
Applied in changeset commit:cdmlib|a20e6aec783ee2e911e75f315e0c9e0137c2e7e7. Andreas Kohlbecker
03:18 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Katja Luther wrote:
> Andreas Müller wrote:
> > Can we remove "Inapplicable IF" and "Only applicable if" for all te...
Andreas Müller
01:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Can we remove "Inapplicable IF" and "Only applicable if" for all term trees except for those...
Katja Luther
12:34 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
Can we remove "Inapplicable IF" and "Only applicable if" for all term trees except for those having term type "Featur... Andreas Müller
11:59 AM bug #8774: Reimplement term tree editors to implement the general save strategy

But this should be done immediately:
Rename menu entry "Term Tree Editor" to "Term Trees" as it is inconsistent ...
Andreas Müller
11:56 AM bug #8774: Reimplement term tree editors to implement the general save strategy
I moved the open menu items to #9338 Andreas Müller
08:44 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
I think all issues are fixed. Only the wrong position for a short time (#9337) and handling of flat trees still open ... Katja Luther
03:14 PM task #8635 (Closed): install collectd + facette for server monitoring
this is now fairly complete. the ticket is linked from the [[ServerAdministration]] wiki page, so it can be closed Andreas Kohlbecker
02:54 PM task #8419 (In Progress): Harmonization of the different specimen representations
work still in progress, moving ticket to next milestone Andreas Kohlbecker
02:53 PM task #8379: Review strange specimen implementations
TODO: final check Andreas Kohlbecker
02:18 PM task #9265 (Closed): Adapt dataportal to new protologue handling
now that #8851 is solved the functionality which has been removed while working on this ticket is restored, so we c... Andreas Kohlbecker
12:18 PM bug #8522: Make type status mandatory in Name type designation editor
Note: A name type might be a status only that is not in the dropdown list, such as:
conserved type
rejected type
t...
Wolf-Henning Kusber
11:55 AM feature request #9338: Restructure term menus
I put milestone to 5.19 as it belongs to #8774 content wise. Andreas Müller
11:55 AM feature request #9338 (Closed): Restructure term menus
We now have the vocabulary menu and the term tree menu. Both look very different but should look similar.
To me it...
Andreas Müller
11:30 AM feature request #9326: Show all authors in bibliographic references
this is rather a question of how the cache strategy. Therefore I am changing category and assignee accordingly Andreas Kohlbecker
10:57 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
~~Another minor issue: could we move "Original Information" above ID Namespace and ID in Source. It is probably more ... Andreas Müller
10:56 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
NPE when editing a lectotype source
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/r...
Andreas Müller
10:52 AM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
The space between URI and type (in external links could be a bit smaller and therefore a bit more space between type ... Andreas Müller
10:51 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Sometimes the nomenclatural source still shows "No external link" yet instead of no protologue yet.
![](picture920...
Andreas Müller
10:09 AM task #9228: Adaptations to allow editing Centaurea in Flora of Greece
AM: ...
Ich würde den Subtree jetzt clonen, d.h. für jedes Taxon eine Kopie anlegen, in der alle Daten (Synonyme, ...
Andreas Müller

11/30/2020

04:54 PM bug #8851: display of name facts not appropriate in all cases
to query for relevant data:
~~~sql
SELECT db.DTYPE, db.id, feature.titleCache, deb.DTYPE, osb.id, osb.citation_id...
Andreas Kohlbecker
03:51 PM feature request #9337 (Closed): Open issues for reimplementation of termtree editors
copied from #8774
1. ~~Show supplemental data (IMPORTANT)~~(actually only for nodes)
2. For a very short time ...
Katja Luther
03:42 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> When adding/removing terms the tree should stay expanded. Currently it collapses and you hav...
Katja Luther
02:42 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> There is still camle case in the label
>
> ![](picture539-1.png)
this is fixed
Katja Luther
10:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > The duplicate check should be done w...
Katja Luther
03:25 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
now I found the missing bit.
In commit:cdm-dataportal|f9b5740e33ff94ab9e1703774379f5d67d103649 the apparently imc...
Andreas Kohlbecker
01:08 PM task #9265 (Closed): Adapt dataportal to new protologue handling
cant see that there is still something missing and thus closing this ticket Andreas Kohlbecker
02:55 PM bug #9103 (Closed): missing exception handling in TaxoNodeDto
the last commit fixes the potential NPE that was in the code after the previous commit. The code looks ok now and the... Andreas Kohlbecker
01:06 PM bug #9103: missing exception handling in TaxoNodeDto
Andreas Kohlbecker wrote:
> Katja Luther wrote:
> > the null check for the classification is missing, the rest seem...
Katja Luther
12:13 PM bug #9103: missing exception handling in TaxoNodeDto
Katja Luther wrote:
> the null check for the classification is missing, the rest seems to be correct.
Good point,...
Andreas Kohlbecker
11:56 AM bug #9103 (Feedback): missing exception handling in TaxoNodeDto
the null check for the classification is missing, the rest seems to be correct. Katja Luther
02:47 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
Katja Luther wrote:
> The type of the in-reference depends on ReferenceType.inReferenceContraints, we should add the...
Katja Luther
02:33 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
Andreas Müller wrote:
> I got the following NPE when playing around with the dialog:
>
> ~~~
>
This should b...
Katja Luther
02:16 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
The type of the in-reference depends on ReferenceType.inReferenceContraints, we should add the constraints mentioned ... Katja Luther
02:30 PM bug #6623 (Closed): formatter for bibliografic citations with citationDetail
I am pretty sure that this was a requirement for the TypeDesignationManager which was composing References + referen... Andreas Kohlbecker
02:04 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
the issue has been fixed in #9318, so we can close this ticket again. Andreas Kohlbecker
01:45 PM feature request #9336 (New): Serverside preference for last used references
ERS:
eine weitere Auffälligkeit:
bei der Auswahl von Referenzen für Faktendaten (in meinem Fall für Verbreitung...
Katja Luther
01:24 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
there are two open FIXMEs in the method:
~~~
// FIXME defining propertyPaths inside of transactional service meth...
Andreas Kohlbecker
01:12 PM bug #9220 (Closed): adapt dataportal to /registrationDTO now using identifier as query parameter and secure against CVE-2007-0450 vulnerability
Andreas Kohlbecker
01:11 PM bug #9218 (Closed): Change /registrationDTO/identifier/... signatures to use query parameters instead
can be closed now that remaining tasks are copied to #9275 Andreas Kohlbecker
01:09 PM bug #9318 (Closed): TaxonNameEditor: nomenclatural reference no longer selectable
Andreas Kohlbecker
01:06 PM task #9222 (Closed): Adapt dataportal to switch to originalSource for remaining single sourced classes
Andreas Kohlbecker
12:37 PM feature request #4754: Implement webservice to get the date of the last change or to check if there are any changes since a certain date
BTW: this is the relevant method in the AbstractOaiPmhController: `eu.etaxonomy.cdm.remote.controller.oaipmh.Abstract... Andreas Kohlbecker
12:06 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
Andreas Müller wrote:
> so can we close the ticket?
yes.
Katja Luther
12:06 PM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
Katja Luther
12:02 PM task #9189: Move datasource view to taxeditor.local
yes, please check whether everything still works. Katja Luther
11:59 AM bug #8174: First test fails if term data is in loaded DataSet
Andreas Kohlbecker wrote:
> I think we should go for option 3) that is to remove TestingTermInitializer and to rely ...
Andreas Kohlbecker
10:58 AM task #9228 (In Progress): Adaptations to allow editing Centaurea in Flora of Greece
Andreas Müller
09:41 AM feature request #9192: Layout issues for source in taxonnode details
I think the only thing still open, is the gap on top of the expandable element. I move this to 5.19 because it is not... Katja Luther
09:37 AM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Applied in changeset commit:taxeditor|69bed327b7a5028e5f904ffe9ac8cca1d01a20e9. Katja Luther
09:26 AM bug #9257: revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
Andreas Kohlbecker wrote:
> Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type...
Katja Luther
09:18 AM feature request #9299 (Closed): Add LSID to author and reference details
the issues mentioned above are solved, so I close this ticket Katja Luther

11/27/2020

07:22 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel()
This has been fixed. As all code compiles now I think review is not necessary. Please review if you think it is needed. Andreas Müller
06:33 PM bug #9322 (Resolved): Remove invalid designation taxon relationship
This is generally fixed. Only in integration_reference there is still 1 record left (mail sent to AK).
After relea...
Andreas Müller
05:33 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
Andreas Müller wrote:
> For "Section" the type is "InProceedings" now which is generally false. We should use "Gener...
Andreas Müller
05:26 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
I got the following NPE when playing around with the dialog:
~~~
last remote method : http://test.e-taxonomy.eu...
Andreas Müller
05:25 PM bug #8547 (Feedback): Default type of a newly created inReference should depend on the type of the reference
For "Section" the type is "InProceedings" now which is generally false. We should use "General" as before or even bet... Andreas Müller
04:24 PM feature request #5795 (Closed): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
It has been added now. So I close the ticket. Andreas Müller
04:23 PM feature request #6589 (Closed): Handle protologue as original source with URI link
I think we can close this ticket. Andreas Müller
04:21 PM bug #8326 (Closed): update labels for is blocking name and is isonym
Andreas Müller
04:18 PM bug #9335 (Closed): termTree webservice response misses titleCache
Andreas Kohlbecker
03:40 PM bug #9335 (In Progress): termTree webservice response misses titleCache
Andreas Kohlbecker
02:31 PM bug #9335 (Feedback): termTree webservice response misses titleCache
There were no changes/commits for long time on the above tickets. So I don't think it is related.
Maybe related to...
Andreas Müller
02:20 PM bug #9335 (Closed): termTree webservice response misses titleCache

1. termTree webservice response misses the titleCache field
1. ~~there is evidence for that the order of the terms...
Andreas Kohlbecker
04:14 PM bug #9124 (Closed): Altitude feature should have [m] as measurement unit by default
Andreas Müller
04:14 PM bug #9124: Altitude feature should have [m] as measurement unit by default
I expect this to work so I close the ticket. Andreas Müller
03:53 PM bug #9124: Altitude feature should have [m] as measurement unit by default
I tested on test and integration. The result looks fine. But we should also run on production once after the release ... Andreas Müller
04:13 PM task #9062 (Closed): Remove StatisticalMeasurementValue.value_old
Is fixed. Andreas Müller
04:11 PM task #9082 (Closed): Update script for old empty Partials handling
Andreas Müller
04:06 PM task #9094 (Closed): Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource
This is fixed Andreas Müller
04:00 PM task #9120: Update script for flowering period supports temporal data
~~~sql
SELECT *
FROM DefinedTermBase dtb
WHERE dtb.supportedDataTypes LIKE '%#TED#%'
~~~
Andreas Müller
03:59 PM task #9120 (Closed): Update script for flowering period supports temporal data
This is fixed on test and integration databases. Andreas Müller
03:55 PM feature request #9121 (Closed): Add abbreviations to Feature
I think we can close this ticket. Looks like it works. We could test on production, but as it not really critical, th... Andreas Müller
03:50 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
By the way, as the above action is a taxon split, in future there will be the need of more user interaction during th... Andreas Müller
03:42 PM bug #9267 (Feedback): No sec reference for move change Synonym to accepted Taxon
The above requirement works as expected but I do not fully agree to the requirement. I think we discussed this some t... Andreas Müller
02:01 PM feature request #9282: Add nomenclatural standing
This generally works and can be closed. A final update script still needs to run to change handling of nom. confus. a... Andreas Müller
01:57 PM feature request #4644 (New): json lib incorrectly serializes values containig the characters [, ], {, }
the above mentioned commit had to be reverted, so this issue is open again Andreas Kohlbecker
12:51 PM task #6591 (Closed): Use name used in source for original spelling
I think this works and can be closed. Andreas Müller
12:45 PM bug #8776 (New): Open issues for TermCollection.allowDuplicates handling in TaxEditor
Now the duplicates are checked on editor side and the message dialog shows which terms can not be added because they ... Katja Luther
11:38 AM bug #8776 (In Progress): Open issues for TermCollection.allowDuplicates handling in TaxEditor
Looks like this is partly fixed already (at least first part of first issue). As it is related to #8774 we should try... Andreas Müller
12:36 PM task #5856 (Rejected): [DISCUSS] Consider implemeting additional name relationships
So I mixed it up. This is on implementation in **dataportal**.
However, I think if name relationships are all show...
Andreas Müller
12:21 PM task #3967 (Duplicate): Rethink original spelling strategy
This is a duplicate for #6591 Andreas Müller
12:06 PM feature request #9194 (Closed): Make RelationshipBase and NomenclaturalStatus reference OriginalSource
This is fixed. I checked the update script result against some test databases. Looks ok (for hybrid relations I did n... Andreas Müller
11:35 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Andreas Müller wrote:
> > The duplicate check should be done when adding the term not only ...
Andreas Müller
11:22 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Andreas Müller wrote:
> > It is now possible to open 2 term tree Editors of the same type. ...
Katja Luther
11:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Andreas Müller wrote:
> > Can we still Change the menu that way that we have Vocabularies i...
Katja Luther
11:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Similar to the duplicates issue a term tree can be "flat". In this case adding a child to a ...
Katja Luther
09:23 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Similar to the duplicates issue a term tree can be "flat". In this case adding a child to a term node should not be a... Andreas Müller
09:20 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> The duplicate check should be done when adding the term not only when saving it.
>
> this...
Andreas Müller
09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
There is still camle case in the label
![](picture539-1.png)
Andreas Müller
08:52 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named...
Andreas Müller
08:51 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
Andreas Müller
08:47 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> It is now possible to open 2 term tree Editors of the same type. This is not wanted as a ter...
Andreas Müller
08:38 AM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
When moving a term up in feature tree via d&d
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem...
Andreas Müller
11:12 AM feature request #9307 (Closed): Preferences for display of termtrees and entries
Andreas Müller
09:11 AM feature request #9307: Preferences for display of termtrees and entries
I guess this is for final review again. Andreas Müller
08:45 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
Applied in changeset commit:taxeditor|9d517193984ee588d4ee88484ddc791710ce613c. Katja Luther
08:41 AM feature request #9307: Preferences for display of termtrees and entries
The functionality itself works. So, when the label is fixed, the ticket can be closed. Andreas Müller
08:32 AM feature request #9307 (Feedback): Preferences for display of termtrees and entries
The label still does not work
![](picture921-1.png)
Andreas Müller
09:09 AM feature request #9287: Show term details in details view of term tree editor
Maybe we do not need to load the data with the initial DTO but asynchronously when ever it is needed. Just in case lo... Andreas Müller
08:55 AM feature request #9287: Show term details in details view of term tree editor
As this is related to #8774 I move it to current milestone as we should implement it soon (might also be an interesti... Andreas Müller
08:20 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Another layout issue somehow related: In external link, can we move the URI to the top and the type below URI? URI is... Andreas Müller
08:17 AM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
But it should be adapted for all single sources like for TaxonNode.source. So indentation is needed everywhere, excep... Andreas Müller
08:14 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Yes, this looks much better. Only for nom. sources "more" is still bold. Can you adapt it there, too? Andreas Müller

11/26/2020

02:27 PM bug #9334 (New): Show error message when feature tree can not be shown because of dirty data
see #8774#note-32 Katja Luther
02:22 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
For the missing feedback I create a new ticket, can we close this ticket? Katja Luther
02:21 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
I think this is fixed now. Please review. Katja Luther
12:54 PM task #9266 (Closed): Remove protologue section from TaxEditor
Andreas Müller
09:32 AM task #9266 (Resolved): Remove protologue section from TaxEditor
Katja Luther
09:31 AM task #9266: Remove protologue section from TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > >
> > > Maybe we could even use the above preference to show or n...
Katja Luther
10:21 AM feature request #9225 (Closed): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
yes I also think that this ticket can be closed.
There might be still some cases in which LIEs might pop up but thes...
Andreas Kohlbecker
09:31 AM feature request #9333 (New): Preference for display of protologue section in nomenclatural source section
from #9266:
The protologue section should also be removed from local and DB preferences I guess as it probably has...
Katja Luther

11/25/2020

10:48 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Caryophallales
so can we close the ticket? Andreas Müller
10:46 PM feature request #9192 (Feedback): Layout issues for source in taxonnode details
Are these still open issues. To me it looks like most of it is solved somehow. But maybe I do not understand some of ... Andreas Müller
10:40 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
... for TaxonNodes.source we should keep indentation of "more" as it is followed by "Related persons" Andreas Müller
10:36 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Can we adapt single source layout according to nomenclatural source layout?
So we
* move External Link up and...
Andreas Müller
09:54 PM feature request #9332 (Closed): Rename TypeDesignationBase.source to .designationSource
as simple "source" creates confusion as there are also the general sources attached to TypeDesignationBase. Andreas Müller
09:37 PM feature request #6581 (Closed): Make all microreferenced references OriginalSources
I think we can close this ticket now. Please reopen if you think there is still something open that is not yet handle... Andreas Müller
09:32 PM feature request #9331 (Closed): Distinguish DescriptionElementSource and NamedSource
... NamedSource is now used in more cases and DescriptionElementSource should have a backlink to DescriptionElement
...
Andreas Müller
09:24 PM task #9330 (Closed): Remove "NomenclaturalSource" from OriginalSourceType
As nomenclatural sources now have there own subclass PrimaryTaxonomicSource is enough for nomenclatural sources.
H...
Andreas Müller
08:59 PM bug #6623 (Resolved): formatter for bibliografic citations with citationDetail
This should be something like DefaultReferenceCacheStrategy.getNomenclaturalCitation(Reference, String) but for bibli... Andreas Müller
08:16 PM feature request #9194 (Resolved): Make RelationshipBase and NomenclaturalStatus reference OriginalSource
I guess this is fixed as we use it already in TaxEditor Andreas Müller
08:10 PM feature request #9329 (Closed): Implement sec reference as original source in dataportal
This is a remaining issue from #9222 as model change is required first.
Also have in mind to adapt jsonConfigura...
Andreas Müller
08:08 PM feature request #9328 (Closed): Adapt Editor to switch to originalSource for taxon secundum
This is the remaining issue from #9199.
Requires model implementation #9327
Andreas Müller
08:07 PM feature request #9327 (Closed): Make taxon secundum reference an original source
copied from #6581 Andreas Müller
08:04 PM feature request #9326: Show all authors in bibliographic references
The third screen shot shows a (new?) truncation of a long title. Looks not bad but is not correct. In this case Fragi... Wolf-Henning Kusber
08:02 PM feature request #9326 (Closed): Show all authors in bibliographic references
In PhycoBank it is necessary to show a complete reference including all bibliographical authors. This is also relevan... Wolf-Henning Kusber
07:29 PM feature request #9325 (Duplicate): Enable section in specimen type designation
The idea is to select or create a section for the typification (of the name we are coming from). Might be necessary f... Wolf-Henning Kusber
07:15 PM feature request #9324 (Closed): Enable designation reference editing in name type designation

Main issues:
6: enable to select an available section (new names) or create a new section (for e.g. lecto- or n...
Wolf-Henning Kusber
06:35 PM bug #9322: Remove invalid designation taxon relationship
Find possible cases:
~~~sql
SELECT tr.id, tb1.titleCache fromx , tb2.titleCache tox, tr.*
FROM TaxonRelationship...
Andreas Müller
02:38 PM bug #9322 (Closed): Remove invalid designation taxon relationship
Invalid designations are simply names which are not valid and therefore are called "designations" only not "names".
...
Andreas Müller
05:08 PM feature request #4644 (Rejected): json lib incorrectly serializes values containig the characters [, ], {, }
this is no longer relevant since we no longer need to get the microreference separately commit:aa06c1f1a2
The hack...
Andreas Kohlbecker
03:16 PM task #9222 (Resolved): Adapt dataportal to switch to originalSource for remaining single sourced classes
this should be mainly fixed, only needs final review Andreas Kohlbecker
03:06 PM task #8275 (Worksforme): [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
AM:
Es gibt noch das Ticket #8275 , welches ich erstellt habe, als ich noch nicht so genau wußte, was es mit der A...
Andreas Müller
03:04 PM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
Andreas Müller wrote:
> All invalid names (term ids may need to be adapted)
I think this is handled sufficiently ...
Andreas Müller
03:03 PM task #9265 (Resolved): Adapt dataportal to new protologue handling
Andreas Kohlbecker
03:03 PM task #9265: Adapt dataportal to new protologue handling
new ticket for discussion on display of ExternalLink.description: #9323
Andreas Kohlbecker
12:25 PM task #9265: Adapt dataportal to new protologue handling
Andreas Kohlbecker wrote:
> this is basically implemented, tests are pending.
>
> One question in advance: Extern...
Andreas Müller
03:01 PM task #9323 (New): discuss display of ExternalLink.description
ExternalLink has the property description, how should this be handled in case of the protologues? I suggest using foo... Andreas Kohlbecker
02:42 PM task #8055 (Rejected): Correct formatting for invalid designations
As Invalid Designation relationships are not supported anymore (as they are incorrect, #9322) this ticket can be clos... Andreas Müller
01:22 PM feature request #9321 (New): Make availability of pro-parte synonyms configurable
Mostly pro parte synonyms should not be created in TaxEditor, therefore it should be configurable whether the menu it... Katja Luther
12:20 PM bug #9241: replace/adapt descriptionPart in render templated
I guess this should be done shortly after the current release so I put it to the current milestone for now so we do n... Andreas Müller
12:18 PM feature request #9225: Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
Andreas Müller wrote:
> I think the vaadin test are now fixed (?). So can we close this ticket?
??
Andreas Müller
12:17 PM task #9266: Remove protologue section from TaxEditor
Katja Luther wrote:
> >
> > Maybe we could even use the above preference to show or not show the external link sec...
Andreas Müller
12:12 PM feature request #9320 (In Progress): Move additional publication information to nomenclatural source
copied from #6589 (see discussion starting at #6589#note-24)
Currently it is stored as name description but the da...
Andreas Müller
12:04 PM feature request #6589: Handle protologue as original source with URI link
Andreas Kohlbecker wrote:
> Interesting, that the UUID is different from that in the data portal code ('cb2eab09-6d9...
Andreas Müller
10:58 AM feature request #6589: Handle protologue as original source with URI link
also in
* cdm_production_cichorieae
* cdm_production_euromed
* cdm_production_euromed_caucasus
* cdm_productio...
Andreas Kohlbecker
10:44 AM feature request #6589: Handle protologue as original source with URI link
Interesting, that the UUID is different from that in the data portal code ('cb2eab09-6d9d-4e43-8ad2-873f23400930').
...
Andreas Kohlbecker

11/24/2020

10:36 PM feature request #6589: Handle protologue as original source with URI link
Additional Publications do definetely exist, e.g. in E+M or caryo_spp
~~~sql
SELECT db.DTYPE, db.id, feature.titl...
Andreas Müller
09:54 PM feature request #6589: Handle protologue as original source with URI link
I found a special case in the data portal code for the feature:
~~~
UUID_ADDITIONAL_PUBLICATION = 'cb2eab09-6d9d-...
Andreas Kohlbecker
10:34 PM task #9265 (Feedback): Adapt dataportal to new protologue handling
this is basically implemented, tests are pending.
One question in advance: ExternalLink has the property `descript...
Andreas Kohlbecker
10:12 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable
Reference selectable for basionym, replaced synonym, and validation. The ticket can be closed. Wolf-Henning Kusber
05:18 PM bug #9318 (Resolved): TaxonNameEditor: nomenclatural reference no longer selectable
this should be fixed now, can you please review? Andreas Kohlbecker
05:17 PM bug #9318 (In Progress): TaxonNameEditor: nomenclatural reference no longer selectable
Andreas Kohlbecker
05:13 PM bug #9318 (Duplicate): TaxonNameEditor: nomenclatural reference no longer selectable
Andreas Kohlbecker
05:10 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable
this is actually a bug introduced with #9229 - implementation was incomplete.
Andreas Kohlbecker
04:49 PM bug #9318 (Closed): TaxonNameEditor: nomenclatural reference no longer selectable
after the changes that turn the nomenclatural reference into a `DescriptionElementSource` (#9225, #6581) the nomencla... Andreas Kohlbecker
07:04 PM task #9319 (New): adapt name render templates to new nomenclatural source which also contain protologues as external links
1. The render templates still refer to the old model in which protologues have been handled via name descriptions.
2...
Andreas Kohlbecker
05:12 PM feature request #9229 (In Progress): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
reopening since this implementation is incomplete, see #9318 Andreas Kohlbecker
02:39 PM feature request #8769: Biocase import configuration should be shown when clicking on import button
the wizard is structured in the way described above. Katja Luther
12:55 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking on import button
Katja Luther
12:55 PM feature request #8769: Biocase import configuration should be shown when clicking on import button
now the configuration dialog is opened with every click on import and the classifiction is added to the config wizard. Katja Luther
10:37 AM feature request #5795: [DISCUSS] Do we need comb. ined. as a nomenclatural status?
The status has been implemented a couple of years ago so Andreas Müller

11/23/2020

08:24 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
As this is a milestone interal ticket only I remove the target version Andreas Müller
01:04 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
confirmed! the commit:374e76ca85 for #6581 fixes this issue Andreas Kohlbecker
04:06 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
There is no specific web service for protologues so only the dataportal needs to be adapted. Andreas Kohlbecker
02:10 PM bug #8833 (Duplicate): distribution editor: Exception when filtering by taxon
tested at the example of http://test.e-taxonomy.eu/cdmserver/cichorieae/app/distribution#!distGrid
could not repro...
Andreas Kohlbecker
01:17 PM bug #9317 (In Progress): Handle NameTypeDesignations on name basis not on homotypic group basis in outputs
WGB:
Bei Gattungen und infragenerischen Rangstufen, die auf anderen Namen basieren wird [...] eine Kombination (Ar...
Andreas Müller
09:56 AM feature request #9316: Add preference to define number of initialy shown elements in drop down menus
As such dropdowns exist at many places we should have a predicate like "number of rows in dropdown" and define which ... Andreas Müller
08:54 AM feature request #9316 (New): Add preference to define number of initialy shown elements in drop down menus
mail ERS:
Bei der Auswahl des Distribution Status im Details View habe ich ein scroll-down-Menü, welches mir aber ...
Katja Luther
09:44 AM bug #6757 (Worksforme): AbcdImportWizard has all configurator flags set to false
no, this is fixed in the meantime Katja Luther

11/20/2020

11:09 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
Andreas Müller
11:08 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
Works as expected Andreas Müller
11:07 PM feature request #9299 (Feedback): Add LSID to author and reference details
In general this is fixed.
Only issues:
* can we move URI above DOI and LSID in Reference Details View.
* can ...
Andreas Müller
11:03 PM bug #6947 (Closed): Incorrect error for LSID field
This works as expected Andreas Müller
10:58 PM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
This is fully fixed Andreas Müller
10:47 PM feature request #9282 (Resolved): Add nomenclatural standing
still need to update in cdmlight Andreas Müller
07:07 PM feature request #9282 (In Progress): Add nomenclatural standing
Andreas Müller
10:44 PM bug #9312 (Resolved): NullPointerException (NPE) in TaxonNamePopupEditor
This should be fixed with the current update script. You need to reinstall a version prior to 5.18.0 and run the upda... Andreas Müller
03:34 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
this seems to be due to a problem in the model upgrade script which misses to handle NomeclaturalSources correctly an... Andreas Kohlbecker
01:51 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s... Andreas Kohlbecker
10:07 PM feature request #5795 (Resolved): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
Andreas Müller
06:20 PM task #9315 (Closed): Remove old single source citation and microCitation columns
Include all single sources from #6581
For nomenclatural source it may look like
~~~sql
//#9315 remove ...
Andreas Müller
06:17 PM task #9314 (New): Swap 'is conserved against'
We may think about swapping the direction of "is conserved against" .
This might be an advantage when evaluating t...
Andreas Müller
06:08 PM bug #8859 (Closed): RegistrationItemNameAndTypeButtons invalid regex pattern
Andreas Kohlbecker
06:08 PM bug #8859 (Resolved): RegistrationItemNameAndTypeButtons invalid regex pattern
Applied in changeset commit:cdm-vaadin|2deb1814c68bd161651f888988f74b04e659a928. Andreas Kohlbecker
05:08 PM feature request #9224 (Closed): openlayers map handles server error per layer and presents a user message
fully solved Andreas Kohlbecker
05:01 PM task #6591 (Resolved): Use name used in source for original spelling
Andreas Müller
04:48 PM bug #9313 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor
please review once #9312 is also solved - needs prior communication with the dev team to check that the data base is ... Andreas Kohlbecker
01:58 PM bug #9313 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor
beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s... Andreas Kohlbecker
04:45 PM feature request #9272 (Resolved): Add missing nomenclatural status
Finally we added
protected
in sched.
pro syn.
orth. var. (as status)
comb. ined.
Andreas Müller
03:01 PM bug #9311 (In Progress): Update some (abbrev) labels for nomenclatural status types
Andreas Müller
12:40 PM bug #9311 (Closed): Update some (abbrev) labels for nomenclatural status types
opus. utique oppr. => op. utique oppr.
nom. orth. cons. => orth. cons.
nom. orth. cons. prop. => orth. cons. prop.
...
Andreas Müller
01:05 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
Andreas Kohlbecker
09:34 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
Gomphonemopsis ligowskii is published and has a holotype.
I inserted a unpublished test reference Kusber in Zeitschr...
Wolf-Henning Kusber
09:17 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
Checked this example. The issue is perfectly solved. Before we close the ticket, I want to find an example with mixed... Wolf-Henning Kusber
11:51 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
please review Katja Luther
08:40 AM bug #9310 (New): Deleting a taxon with all synonyms fails for the basionym
The synonym set as basionym is not deleted because the check for basionym prevents the delete. There should be anothe... Katja Luther
08:32 AM feature request #7797: Second nomenclatural reference
AM:
... Eine Idee wäre, den Text dieser zweiten Referenzen statt in die NameFacts in die neue Nomenclatural Sourc...
Andreas Müller

11/19/2020

05:14 PM bug #9184 (Closed): WSOD in advanced search cdm_dataportal/search
After re-indexing the problem does no longer occur.
discrepancies of the search index with the database could be m...
Andreas Kohlbecker
01:38 PM bug #9184: WSOD in advanced search cdm_dataportal/search
This problems seems to be caused by search indices which are not in sync with the cdm db.
The data portal now igno...
Andreas Kohlbecker
03:38 PM feature request #9309: Improve handling of specimen without titlecache in cdmLight
The problem here is not primarily a cdmlight issue but an issue of missing title cache strategy (formatter) for Deriv... Andreas Müller
01:55 PM feature request #9309 (New): Improve handling of specimen without titlecache in cdmLight
copied from #9262:
Ausgabe -title cache generation not implemented-. Das kommt, soweit ich sehe, nur bei specimens...
Katja Luther
02:01 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
This is fixed for all sources listed above, for sec reference I create a new ticket or we create a new one when the s... Katja Luther
01:58 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Caryophallales
all issues are implemented except the specimen without titleCache, therefore a new ticket exist (#9309) Katja Luther
01:56 PM feature request #9262 (Resolved): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
Katja Luther
12:15 PM task #9266: Remove protologue section from TaxEditor
Andreas Müller wrote:
> The protologue section should also be removed from local and DB preferences I guess as it pr...
Katja Luther
12:11 PM feature request #9297 (Resolved): Improve name of zip file for cdmLightExport
please review Katja Luther
12:10 PM feature request #9299 (Resolved): Add LSID to author and reference details
please review Katja Luther

11/18/2020

03:54 PM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor

Even if the plural "s" problem is fixed, there are also other problems with showing the type status in bold letters...
Andreas Kohlbecker
 

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