Activity
From 11/18/2020 to 12/17/2020
12/17/2020
- 08:11 PM Revision b7f8c9d4 (taxeditor): Merge branch 'hotfix/5.18.2'
- 07:53 PM Revision 34753cbb (taxeditor): remove cdmlib-remote-webapp.war from git in hotfix branch
- (cherry picked from commit e8d037bd184f407b89f09df7d93155119480d7b1)
- 07:52 PM Revision 840605a4 (taxeditor): fix NPE for cloned lectotype typedesignations
- (cherry picked from commit 11c7cb1711a7ed2dc828b81318fcaf34e34a3ef9)
- 07:14 PM Revision 45c8cb20 (taxeditor): Updated version in pom / project files to taxeditor version : 5.18.2 and cdmlib version : 5.18.0
- 04:08 PM Revision e8d037bd (taxeditor): remove cdmlib-remote-webapp.war from git in hotfix branch
- 03:50 PM Revision 5b06a013 (taxeditor): Merge branch 'hotfix/5.18.1'
- 03:40 PM Revision 7bc7988e (taxeditor): remove cdmlib-remote-webapp.war from git
- 11:49 AM bug #9142 (Feedback): The Agent search dialog shows duplicated entries
- 11:39 AM bug #9142: The Agent search dialog shows duplicated entries
- can you shortly explain what the problem was and why the commit fixes it?
- 11:36 AM bug #9142: The Agent search dialog shows duplicated entries
- Applied in changeset commit:taxeditor|359b77dda6efc328563cfd93e63aee841662b4e7.
- 11:30 AM bug #9142 (Resolved): The Agent search dialog shows duplicated entries
- This should be fixed. Please review.
- 11:35 AM Revision 359b77dd (taxeditor): fix #9142: fix doubled entries in agent selection dialog
- 10:35 AM Revision 59066f6b (taxeditor): adapt SpringSource GA Repository to https
- 10:34 AM feature request #9337: Open issues for reimplementation of termtree editors
- 16. Add "Open in Vocabulary" to term tree editor context menu; this is generally needed the primary usecase is to all...
- 09:16 AM feature request #9337 (In Progress): Open issues for reimplementation of termtree editors
- 10:10 AM feature request #8289 (Resolved): Add "Open in RefObj view" to term editor context menu
- please review.
- 10:09 AM Revision dc2e648b (taxeditor): ref #8289: add open in to term editor context menu
- 09:13 AM bug #9344: Datasets in Descriptive Dataset Navigator should be ordered
- please review
- 09:13 AM bug #9344 (Resolved): Datasets in Descriptive Dataset Navigator should be ordered
- Applied in changeset commit:taxeditor|b5f32b5d274ff26e8bf15ed9f42c61f028e79584.
- 09:13 AM Revision b5f32b5d (taxeditor): fix #9344: add comparator to descriptive dataset navigator
- 08:48 AM bug #9353 (Resolved): Copy & Paste creates dirty data in term trees
- Applied in changeset commit:taxeditor|27ca515332a1068e6f49ccff9a4466bce556a548.
- 08:48 AM Revision 27ca5153 (taxeditor): fix #9353: fix c&p in term trees
12/16/2020
- 04:29 PM Revision 9c9bb6b3 (taxeditor): remove doubled is
- 04:17 PM Revision 63fd9baa (taxeditor): rename labels for DDS navigator
- 04:13 PM Revision c34d4827 (taxeditor): open in of nomencl.source for the sourced name
- 03:16 PM Revision 25cc3cf4 (taxeditor): adapt DescriptionHelper for refObjects description of nomclat. sources
- 03:02 PM Revision b63ed015 (taxeditor): fix NPE for cloned lectotype typedesignations
- 03:01 PM Revision 11c7cb17 (taxeditor): fix NPE for cloned lectotype typedesignations
- 09:46 AM Revision 4e3c1b39 (taxeditor): remove error message for MAN without sec
- 09:44 AM Revision cca35f36 (taxeditor): do not expand the server side preferences
12/15/2020
- 12:43 PM Revision ea6ec182 (taxeditor): ref #9337: remove obsolete part descriptions
- 12:40 PM Revision f6ba2ccb (taxeditor): ref 9337: rename all termtree related classes
- 11:36 AM feature request #9338 (Resolved): Restructure term menus
- Both menues have the same structure and also the handling of opening the editors are synchronized.
- 11:33 AM Revision 22ac94a9 (taxeditor): ref #9338: restructure term menues and adapt handling
12/14/2020
- 10:44 AM Revision 38018d82 (cdmlib): fix import of dna data with different provider software version
12/11/2020
- 11:13 AM Revision 2cb343b3 (taxeditor): adapt path to cdmlib-remote-webapp.war from webapp to local
- 10:57 AM Revision 849c20bf (taxeditor): fix cdmlib-print and cdmlib-remote for hotfix 5.18.1
- 10:02 AM Revision 56cf64f7 (taxeditor): ref #9356: hotfix solution
- 09:48 AM Revision 40d48f6f (taxeditor): ref #9356: hotfix solution
- 08:20 AM bug #9357 (New): Advanced search shows selection for all classification even if only 1 classification is available for a dataportal
- In the flora of Greece dataportaal only the classification "Vascualar plants of Greece" should be shown
: minor
- 10:41 PM Revision b8ddc6c3 (cdmlib-apps): update cdmlib-app to v5.19.0
- 03:29 PM bug #9356 (In Progress): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- 02:02 PM bug #9356 (Closed): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- There are two comparators violating the contract: SourceComparator in taxeditor and typeDesignationComparator in cdml...
- 01:26 PM bug #9350 (Resolved): Create new taxonnode ignores the publish flag
- yes, this is resolved and the workaround removed.
- 12:51 PM bug #9350 (In Progress): Create new taxonnode ignores the publish flag
- is this resolved and open for review (the develop version)?
- 01:21 PM Revision eb3f9882 (taxeditor): ref #9350: fix is implemented in cdmlib therefore we can remove the workaround in taxeditor
- 12:59 PM bug #9355 (New): Selection dialog for secundum reference does not work correctly
- mail NK:
ich kann keine neue sec. Referenz mehr auswählen, ohne vorher die bereits vorhandene zu löschen. Ich bin ... - 11:32 AM Revision a3d9156f (taxeditor): cleanup
- 11:28 AM Revision 9360e6f2 (taxeditor): cleanup
12/09/2020
- 04:06 PM bug #9354 (Resolved): Sorting in distribution editor is broken
- fixed for hotfix 5.18.1
- 04:05 PM bug #9354 (Closed): Sorting in distribution editor is broken
- The comparator for sorting the taxa in distribution editor does not work correctly.
- 04:04 PM bug #9353 (Closed): Copy & Paste creates dirty data in term trees
- It was missed to implement copy & paste for the dto implementation of the term tree editors, the menu items are still...
- 10:24 AM Revision 6b6ae919 (taxeditor): fix distribution editor comparator
- 10:02 AM Revision f34ce847 (taxeditor): fix distribution editor comparator
12/08/2020
- 01:51 PM bug #9352 (New): Missing order in quantitative data wizard
- mail AM:
bei Eingabe von QantData scheint mir die Reihenfolge der Felder etwas beliebig. Kann man das evtl. fest v... - 12:55 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
- WGB:
die Lösung für dieses Ticket hängt von der breiteren Diskussion dieser Kategorien und ihrer Verbindung mit de... - 12:52 PM bug #8971: Long running tasks in taxon navigator should disable the navigator
- WGB:
hier nur nochmal die Bestätigung, dass das ein an verschiedenen Stellen auftretendes Problem ist, besonders, ... - 10:56 AM Revision 3c793992 (taxeditor): ref #9199: fix missing handling of name in source in nomenclatural source
- 10:52 AM Revision af6adc60 (taxeditor): ref #9199: fix missing handling of name in source in nomenclatural source
- 08:37 AM bug #9351 (Closed): Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
- cdmlib-print and cdmlib-remote are now only available in taxeditor.printpublisher.
Therefore the according links t...
12/07/2020
- 11:16 PM Revision 12490f6a (taxeditor): cleanup
- 11:16 PM Revision e62fc33a (taxeditor): remove cdmlib-remote from local (to test if it is needed at all there)
- 11:16 PM Revision b67648cb (taxeditor): upgrade cdmlib-print and cdmlib-remote to 5.19-Snapshot in printpublisher
- 11:16 PM Revision b4221bf3 (taxeditor): again add remote-webapp-war to gitignore
- 12:15 PM bug #9350: Create new taxonnode ignores the publish flag
- implemented a workaround for hotfix 5.18.1 in editor, this should be removed for the next release. The correct fix co...
- 12:12 PM bug #9350 (Closed): Create new taxonnode ignores the publish flag
- Creating a new taxon node and do not set the publish flag is not taken for the newly created taxon.
- 12:09 PM Revision d4de1459 (taxeditor): workaround for missing publish flag in newTaxonNode
- 12:06 PM Revision a3509fe0 (taxeditor): workaround for missing publish flag in newTaxonNode
- 11:55 AM Revision ac6fd8fc (cdmlib): fix missing publish flag in createTaxonnode
12/05/2020
- 01:43 PM bug #6488 (Closed): Always show some label text in the specimen editor even when no information is available
- This seems to be fixed as it did not appear anymore. Open new ticket if something similar happens again.
- 01:42 PM bug #4330: Correct handling of nomenclatural inreferences of Journals
- not yet fixed therefore I move it to current milestone
- 01:39 PM bug #1924: CIHORIEAE in-references in Footnotes
- This is still open therefore I move it to current milestone
- 01:38 PM bug #2969: Correct formatting for bibliographic references
- This is not yet fixed therefore I move it to current milestone.
- 01:27 PM feature request #7334 (Closed): Make pro parte and partial synonyms real concept relationships
- This is in use now for longer time and no errors were reported, so I guess we can close it.
- 01:22 PM feature request #5396: User interface to create a Remote Source
- moving all open remoting 6.0 tickets to Unassigned
- 01:21 PM feature request #5366: Implement less strict check for compatibility between taxeditor and target cdmserver
- moving all open remoting 6.0 tickets to Unassigned
- 01:20 PM feature request #5356: Handle exceptions which require reconnect
- moving this open remoting 6.0 ticket to current milestone to decide what to do with it.
Is the above mentioned sol... - 01:18 PM feature request #5020: [MASTER] Refactor / Redesign
- moving this open remoting 6.0 ticket to current milestone as we have to decide what to do with it (to me it is unclear)
- 01:16 PM feature request #4931: [Master] Fix Performance Issues
- moving this open remoting 6.0 tickets to Reviewed Next Major Release as subtickets are also there
- 01:11 PM feature request #4930: Implement Tests for Bulk Editor
- moving all open remoting 6.0 tickets to Unassigned
- 01:11 PM feature request #4929: Implement Tests for Polytomous Key Node Editor
- moving all open remoting 6.0 tickets to Unassigned
- 01:10 PM feature request #4074: [MASTER] Setup testing framework for remoting
- moving all open remoting 6.0 tickets to Unassigned
- 01:09 PM feature request #4021: H2 running in Server mode
- moving all open remoting 6.0 tickets to Unassigned
- 12:57 PM feature request #5794 (Resolved): Move other invalid names to the end
- Needs to be checked against new implementations within #9272 and #9282 , does comparator work accordingly. Also add d...
- 12:51 PM bug #9311 (Closed): Update some (abbrev) labels for nomenclatural status types
- 11:13 AM Revision d4511e7d (cdmlib): cleanup
- 11:13 AM Revision 1d8d7a2f (cdmlib): remmove potential NPE in TermNode.toString
- 10:55 AM Revision 5fc450f7 (cdmlib): cleanup
- 09:37 AM Revision e819af3f (cdmlib-apps): Update BgbmInstancesUpdater to new production instances
- 09:36 AM Revision a1205648 (cdmlib-apps): move country methods to term service in SynthesysCacheActivator
12/04/2020
- 05:59 PM Revision 2190c91b (taxeditor): fix wrong dependency to 5.18.0 snapshot version in printpublisher and local
- 04:47 PM bug #9347: LIE during ABCD file import
- This should be fixed soon.
- 03:32 PM bug #9347 (New): LIE during ABCD file import
- File imported: attachment:Kurs-19_20_Herbar.xml
~~~~
++++++++Import Report+++++++++
Specimens created: 0
Skippe... - 04:35 PM feature request #4866 (Closed): Implement clone method for complete classifications
- This is implemented so far (tested for Centaurea/FoG on command line) with some open issues.
- 04:33 PM bug #9349 (New): Open issues for classification cloning
- * "Import Result" including count cloned taxa, synonyms, names, ... (do we need to merge UpdateResult and ImportResul...
- 04:21 PM feature request #9320 (In Progress): Move additional publication information to nomenclatural source
- 04:11 PM task #9315 (In Progress): Remove old single source citation and microCitation columns
- 04:11 PM feature request #9327 (In Progress): Make taxon secundum reference an original source
- 04:10 PM bug #8141: explicitSource as additional attribute for TypeDesignationStatus
- not so high priority as long as TypeDesignationStatus vocabularies can not be edited
- 03:50 PM bug #9348 (New): Specimen online import dialog issues
- 1. The dialog has extrem width (at least in the KDE desktop environment) this seems to come from the widht of the com...
- 03:00 PM bug #9264: Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- I hope this is fast to fix, therefore I move it to 5.19
- 02:55 PM feature request #9192: Layout issues for source in taxonnode details
- If close, please move it back to 5.18
- 02:55 PM feature request #9192: Layout issues for source in taxonnode details
- This to me looks fine now. Maybe we could have a bit more space above "Related persons or teams if the "more" section...
- 02:48 PM bug #9073: Configuring the matrix view throws HTTP invoker exception
- When testing this I got another exception (NPE) during save:
~~~
last remote method : http://test.e-taxonomy.eu:8... - 02:45 PM bug #9245 (Feedback): Creating derived units from existing derived unit is not possible in specimen tree editor
- This to me seems to be fixed. Katja can you check, and if true add commit and correct target version?
- 02:23 PM bug #9346: Adding specimen to character matrix fails sometimes
- The Problem occurred with unit ID 433 in rem_conf_am (Dianthella test Node; Germany, Berlin (MC 67)).
- 01:32 PM bug #9346 (Closed): Adding specimen to character matrix fails sometimes
- There are two issues:
1. the SourceDTO is not serializable
2. LIE
~~~ text
ENTRY org.eclipse.e4.ui.workbench... - 02:10 PM bug #8660 (Duplicate): Generic menu creation for Term trees
- I think this is a duplicate for #9338 though the focus how to implement it has changed.
- 02:09 PM Revision b4323390 (taxeditor): Revert "Updated version in pom / project files to taxeditor version : 5.13.1 and cdmlib version : 5.13.0"
- This reverts commit bc421a42016f0e20f65ad9f2cc818899b53508e0.
- 02:09 PM feature request #9338: Restructure term menus
- This ticket seems to be somehow contradictory to #8660. However, currently I think a menu not automatically created i...
- 01:54 PM Revision b1eecb5d (taxeditor): add import
- 01:50 PM Revision 279a5b72 (taxeditor): missed to commit adapted manifest
- 01:34 PM Revision 5a1563c0 (taxeditor): avoid NPE when using new node as parent for d&d
- 12:58 PM bug #9345 (New): Prevent or warn about unparsable values when entering quantitative data
- Currently when entering e.g. "2,3" and pressing OK, the data is not stored but also no warning is given that it is p...
- 11:51 AM Revision aaea7d8a (taxeditor): Revert "avoid NPE when using new node as parent for d&d"
- This reverts commit 64dd32e955f33805399bc2b70b2f6bc14c12d4a0.
- 11:51 AM Revision 2c2faa69 (taxeditor): avoid NPE when using new node as parent for d&d
- 11:49 AM Revision 09e63d7a (taxeditor): fix problem with last selected references
- 11:48 AM bug #9344 (Closed): Datasets in Descriptive Dataset Navigator should be ordered
- ... alphabetically
Currently they seem to be unordered.
- 11:47 AM Revision bc421a42 (taxeditor): Updated version in pom / project files to taxeditor version : 5.13.1 and cdmlib version : 5.13.0
- 11:09 AM feature request #8554 (Feedback): Allow drag&drop from character into FeatureTrees
- this is probably a duplicate for #8774/#9337 (issues 4 and 5)?
- 10:58 AM Revision 64dd32e9 (taxeditor): avoid NPE when using new node as parent for d&d
- 10:03 AM bug #7990 (Closed): Moving a feature via d&d does not make the Feature Tree Editor dirty
- ups no, this issue is solved with the new implementation.
- 10:01 AM bug #7990 (Feedback): Moving a feature via d&d does not make the Feature Tree Editor dirty
- Is this still an open issue with the new term tree implementation? If not we should close it as works for me or as du...
- 09:34 AM Revision 028014b6 (taxeditor): Updated version in pom / project files to taxeditor version : 5.18.1 and cdmlib version : 5.18.0
12/03/2020
- 09:34 PM Revision 113e67ef (taxeditor): Merge branch 'release/5.18.0' into develop
- 09:34 PM Revision 5155769b (taxeditor): Merge branch 'release/5.18.0'
- 08:54 PM Revision c654b140 (cdm-server): Merge branch 'release/5.18.0' into develop
- 08:54 PM Revision 51596a1b (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 08:53 PM Revision f0a436fd (cdm-server): updating poms for branch'release/5.18.0' with non-snapshot versions
- 08:52 PM Revision 345bcff8 (cdm-webapp): Merge branch 'release/5.18.0' into develop
- 08:52 PM Revision d9a3e77e (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 08:51 PM Revision a08a9f9c (cdm-webapp): updating poms for branch'release/5.18.0' with non-snapshot versions
- 08:51 PM Revision 8eb6f658 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.18.0
- 08:47 PM Revision c7e0b908 (cdm-dataportal): Merge branch 'release/5.18.0' into develop
- 08:47 PM Revision 6b7f29c7 (cdm-dataportal): updating poms for branch'release/5.18.0' with non-snapshot versions
- 08:47 PM Revision d2962586 (cdm-dataportal): release-preparation: production level css
- 08:47 PM Revision 9ed2ff7f (cdm-vaadin): Merge branch 'release/5.18.0' into develop
- 08:47 PM Revision 9251885f (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 08:43 PM Revision 90094ee9 (cdm-vaadin): updating poms for branch'release/5.18.0' with non-snapshot versions
- 08:43 PM Revision 99fbbfaf (cdm-vaadin): jenkins bumping cdmlib.version to 5.18.0
- 08:28 PM bug #8774 (Closed): Reimplement term tree editors to implement the general save strategy
- I think we can close this ticket. All remaining issues will go into the follow up ticket #9337
- 02:00 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- I move the expand of the tree after saving to the follow up ticket.
- 12:35 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- The saving of the termtree editor before adding a new term is not necessary anymore, only moving a new term is not po...
- 11:26 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- D&D on itself makes a node disappear and saving it creates a stackOverflow
- 11:23 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- The tree should stay expanded when saving
- 08:26 PM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Character Editor
- I tested again. It seems to work if the editing of the structure tree is done in the same TaxEditor instance or if th...
- 08:00 PM bug #9343 (Duplicate): Open issues for DTO based term tree & character editor
- upps, this is a duplicate of course for #9337. I moved all issues there
- 07:28 PM bug #9343 (Duplicate): Open issues for DTO based term tree & character editor
- copied from #8774
* tree collapses sometimes after save
* d&d from vocabulary editor to character editor not yet ... - 07:33 PM Revision af199beb (cdmlib): Updating develop poms back to pre merge state
- 07:33 PM Revision 638beb74 (cdmlib): Merge branch 'master' into develop
- 07:33 PM Revision 8c4580af (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 07:33 PM Revision 27b8c645 (cdmlib): Merge branch 'release/5.18.0'
- 07:11 PM Revision 5bdde967 (cdmlib): updating poms for branch'release/5.18.0' with non-snapshot versions
- 06:48 PM Revision f3722b4a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.18.0-SNAPSHOT
- 06:47 PM Revision 6d43461a (cdm-webapp): updating poms for 5.19.0-SNAPSHOT development
- 06:47 PM Revision 66dbc081 (cdm-webapp): updating poms for 5.18.0 branch with snapshot versions
- 06:47 PM Revision 0e2580eb (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.19.0-SNAPSHOT
- 06:30 PM bug #9267 (Closed): No sec reference for move change Synonym to accepted Taxon
- First version was implemented now.
I think we can close this ticket. All the rest will be done in the follow up ti... - 03:32 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
- Now there is only a statement saying "The new taxon and the parent does not have the same secundum reference". But yo...
- 01:55 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
- A "hot fix" version is implemented now. The new accepted taxon keeps the secundum reference of the former synonym and...
- 06:24 PM Revision 0b1617f5 (taxeditor): Updated version in pom / project files to taxeditor version : 5.19.0-SNAPSHOT and cdmlib version : 5.19.0-SNAPSHOT
- 06:24 PM Revision f28ad9fa (taxeditor): Updated version in pom / project files to taxeditor version : 5.18.0 and cdmlib version : 5.18.0
- 06:23 PM Revision 6b274bd6 (cdm-server): updating poms for 5.19.0-SNAPSHOT development
- 06:23 PM Revision 599dde48 (cdm-vaadin): jenkins bumping cdmlib.version to 5.18.0-SNAPSHOT
- 06:23 PM Revision 7e0d9ffd (cdm-dataportal): updating poms for 5.19.0-SNAPSHOT development
- 06:23 PM Revision 1ae1237f (cdm-vaadin): updating poms for 5.19.0-SNAPSHOT development
- 06:23 PM Revision 2e76afe1 (cdm-vaadin): updating poms for 5.18.0 branch with snapshot versions
- 06:23 PM Revision c0d8b571 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0-SNAPSHOT
- 06:20 PM Revision 3a956fb6 (cdmlib): updating poms for 5.19.0-SNAPSHOT development
- 06:20 PM Revision 2f1c9deb (cdmlib): updating poms for 5.18.0 branch with snapshot versions
- 06:14 PM feature request #8529: [DISCUSS]Display of aggregated descriptions
- Norbert, can you have a look on this ticket if you remember what was meant?
- 06:09 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- Katja, do you remember why this ticket was assigned to me? Simply a mistake?
Can we reproduce this behavior? - 05:52 PM bug #8547 (Closed): Default type of a newly created inReference should depend on the type of the reference
- This is fixed as far as now by default the most likely reference type is now prefilled for inreferences.
There is ... - 02:28 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- ReferenceType.inReferenceContraints() is a list now, so the first element in the list is the default preferred type. ...
- 05:48 PM feature request #9342 (New): Only show specific reference types for inreferences
- copied from #8547
RefereceType.inReferenceContraints() returns the possible values available for an inreference. T... - 05:45 PM Revision 76ee473f (cdmlib): ref #8547 add inreference type for Proceedings
- 05:45 PM Revision 9f5a2d3a (cdmlib): throw exception when datasource could not be saved (instead of logging only)
- 05:44 PM Revision c58fbd18 (cdmlib): cleanup
- 05:39 PM bug #9199 (Closed): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Works as expected. We can close this ticket.
- 03:31 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > ~~Another minor issue: could we move... - 03:13 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- 03:09 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Andreas Müller wrote:
> Andreas Müller wrote:
> > ~~Another minor issue: could we move "Original Information" above... - 01:56 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- this should be solved with last commit.
- 05:25 PM Revision 8bdc7bb8 (taxeditor): ref #9267: warning message instead of confirm message box
- 05:21 PM task #9189 (Closed): Move datasource view to taxeditor.local
- This works now but there are still open issues to solve before all cdmlib-db stuff can fully migrate to taxeditor.loc...
- 05:20 PM feature request #9341 (New): Move local datasource access fully to taxeditor.local
- The datasource view has been migrated to taxeditor.local in #9189.
However, there is still a dependency to cdmlib-... - 05:19 PM Revision 49f27511 (taxeditor): ref #8774: only one message when trying to move new node
- 04:59 PM Revision 9f3ac470 (taxeditor): some doc
- 04:55 PM Revision 25082155 (taxeditor): ref 9189 add mchange-commons-java to MANIFEST
- 04:42 PM Revision d9f875da (taxeditor): minor
- 04:36 PM Revision 2fdfb0a3 (taxeditor): cleanup
- 04:36 PM Revision 88090686 (taxeditor): some gitignores
- 04:34 PM Revision 4228a4ef (taxeditor): ref 9189 add mchange-commons-java to dependency copy
- 03:36 PM feature request #9340 (Closed): Workflow support for secundum handling when making synonym a new accepted taxon
- copied from #9267
(1) check above ticket for remaining issues. Most important is to have a preference to handle th... - 03:26 PM Revision 5eabd2c1 (taxeditor): ref #9199: move original information behind name used in source
- 02:25 PM Revision 46418777 (cdm-vaadin): ref #8547 make ReferenceType.inReferenceContraints() a list (adapt vaadin)
- 02:23 PM Revision 2c0bb8e3 (cdmlib): ref #8547 make ReferenceType.inReferenceContraints() a list
- 01:55 PM task #6714: Create 001-cdm.h2.sql automatically
- This is more or less done in 5.18 except for the copying issue
- 01:35 PM Revision 91febabd (taxeditor): ref #8774: code cleaning
- 01:35 PM Revision e33f888a (taxeditor): ref #8774: label issues in character editor
- 01:09 PM Revision 427ed9f2 (taxeditor): ref #8774: label issues in character editor
- 12:26 PM Revision 81222649 (taxeditor): ref #8774: save is not necessary for creating new terms
- 12:01 PM Revision 4a70bee8 (cdm-dataportal): ref #8851 adapting test assertions to modified test data
- 10:53 AM Revision b15678f9 (taxeditor): ref #8774: change text for duplicates
- 10:40 AM Revision 4756075a (taxeditor): ref #8774: avoid d&d to child of the dropped node
12/02/2020
- 10:37 PM Revision 68aa76e0 (cdm-dataportal): ref #9322 changing test case for invalid designation to misapplied name
- 07:53 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- The above also happens when D&D a NamedAreae from NamedArea Term Editor to NamedArea Term Tree Editor, so it is proba...
- 07:51 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- D&D a NamedArea term from a NamedArea Tree Term Editor to an Rank Tree Term Editor leeds to the below NPE:
D&D wit... - 07:47 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- D&d a term onto its own child makes both disappear in the UI. Saving this is one way to create the above StackOverflo...
- 07:38 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- after moving some ranks around in the term editor I got the following when trying to save:
~~~
last remote method... - 01:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- The text for duplicate recognition should be improved from
This term tree does not allow duplicates and there exi... - 01:00 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- When changing a tree by e.g. changing a flag (order relevant) and then adding a term a message comes that the tree ne...
- 12:20 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- ... this happens whereever I try to move the 3rd rank from position of being child of 2nd rank (but in the same sessi...
- 12:17 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
- AOOB with a rank tree with 3 top level children, first I moved 3rd rank to be child of 2nd rank, than I tried to move...
- 11:47 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- I think all remaining issues are solved or moved to new tickets.
- 07:00 PM bug #9322 (Closed): Remove invalid designation taxon relationship
- 06:50 PM feature request #9282 (Closed): Add nomenclatural standing
- 06:28 PM Revision 387aef2a (taxeditor): ref #9199: layout issues and code cleaning
- 06:22 PM Revision 0eb2578c (cdmlib): ref #6591 handle also AUD table in SingleTermRemover for removing original spelling
- 06:21 PM Revision dcf6678d (cdmlib): cleanup
- 06:20 PM Revision e2d8dde3 (cdmlib): ref #9322 handle also AUD table in SingleTermRemover and connect the schema updater
- 05:19 PM Revision 1fa1f3de (cdmlib): cleanup
- 05:13 PM bug #9257: revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > Hi Katja & AM, the current implementation partially filters for... - 04:45 PM Revision 1c2b2e59 (cdmlib): move country methods to term service and some cleanup
- 04:31 PM feature request #9190 (In Progress): Make taxeditor.local a loadable plugin not installed by default
- 04:30 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- ... looks like the error appears at different places depending on the type field that you enter data in
- 04:28 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Also the NPE still exists, but with a different row number:
~~~
last remote method : http://test.e-taxonomy.eu:80... - 04:25 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Andreas Müller wrote:
> ~~Another minor issue: could we move "Original Information" above ID Namespace and ID in Sou... - 04:23 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Andreas Müller wrote:
> Sometimes the nomenclatural source still shows "No external link" yet instead of no protolog... - 11:45 AM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- please review.
- 11:42 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Andreas Müller wrote:
> NPE when editing a lectotype source
>
> ~~~
> last remote method : http://test.e-taxonom... - 04:15 PM Revision 7b2afc79 (cdmlib-apps): uncomment schema location in app-import pom (not sure why it was commented)
- 04:14 PM Revision a1c98b63 (cdmlib-apps): ref #9228 add CentaureaCloneActivator
- 04:12 PM Revision 11e38aae (cdmlib): ref #9228 , ref #4866 some fixes for subtree cloning
- 04:12 PM Revision 5d03f828 (cdmlib): cleanup
- 03:03 PM Revision 3385926d (cdmlib): ref #9267: set sec of new taxon to sec of synonym
- 03:01 PM Revision bb2b5493 (taxeditor): ref #9267: add message if sec of new taxon differs from sec of new parent
- 02:46 PM Revision e796e4aa (taxeditor): ref #9189: move new menu item to the top
- 02:42 PM task #9189: Move datasource view to taxeditor.local
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > The "New"... - 02:27 PM Revision 3b11ede7 (taxeditor): avoid widget is disposed exception
- 02:06 PM Revision 21015b47 (taxeditor): ref #8774: fix AOOB Exception in termtree editor
- 02:05 PM bug #6356 (Closed): taxontree sort order as in editor
- Norbert wrote: "alles klar, gelöst!"
- 01:54 PM feature request #8308 (Worksforme): Extend specimen type designation editor
- 01:45 PM feature request #8308: Extend specimen type designation editor
- This ticket can be set to "worksforme".
The image issue raised is not what the screenshot here shows. I will comment... - 01:27 PM bug #9313 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor
- 01:04 PM bug #9313: LazyInitializationException (LIE) in TaxonNamePopupEditor
- no problems with existing names (orthogr. variant, corrected name, species name, genus name) anymore. Ticket can be c...
- 12:54 PM Revision 0b429510 (cdm-dataportal): ref #9322 removing taxon relationship invalid designation from portal code
- 12:30 PM bug #8776 (In Progress): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- 12:28 PM Revision ca0e1f12 (taxeditor): ref #4866, ref #9228 fix postgresql version number and add to gitignore
- 12:07 PM Revision 9306fdac (taxeditor): ref #4866, ref #9228 preliminary revert moving h2, postgresql and mysql from cdmlib to local and include mchange-commons-java in cdmlib
- 11:42 AM Revision d34bc6be (taxeditor): fix NPE in nameEditor
- 11:35 AM Revision bd5b538f (taxeditor): ref #9199: fix NPE for newly created designation source
- 11:35 AM Revision 0a20a617 (taxeditor): ref #9332: further clean up in editor
- 09:07 AM feature request #9339: Improve warning message if save is necessary
- We should do this soon
- 08:22 AM feature request #9339 (New): Improve warning message if save is necessary
- The actual warning message "The editor needs to be saved..." is misleading because normally only the active window is...
12/01/2020
- 08:45 PM Revision 77f6a14a (taxeditor): ref #4866, ref #9228 fix CloneClassificationOperation preliminary in TaxEditor
- 08:41 PM Revision 0b79f873 (taxeditor): ref #4866, ref #9228 fix CloneClassificationOperation preliminary in TaxEditor
- 08:36 PM Revision 77ad5e8c (taxeditor): ref #4866, ref #9228 fix CloneClassificationOperation preliminary in TaxEditor
- 08:06 PM Revision 9d1786e4 (cdmlib): ref #4866, ref #9228 try to fix further test in suite
- 08:01 PM Revision 8d24eb30 (cdmlib): cleanup
- 08:01 PM Revision 2b75e024 (cdmlib): ref #4866, ref #9228 try to fix NameServiceImplTest in suite
- 07:45 PM Revision 32aa5af0 (cdmlib): ref #4866, ref #9228 add references for test
- 07:28 PM Revision 8f658368 (cdmlib): ref #4866, ref #9228 fix test and use referenceDao instead of refService internally
- 07:19 PM Revision 67518a48 (cdmlib): ref #4866, ref #9228 implement subtree clone (cont., fix taxon cloning)
- 07:02 PM feature request #4866: Implement clone method for complete classifications
- this is a blocker for #9228
- 06:57 PM Revision 00f63413 (cdmlib): cleanup
- 06:33 PM Revision e04ce4b2 (cdmlib): ref #4866, ref #9228 implement subtree clone
- 04:43 PM task #9189: Move datasource view to taxeditor.local
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> and the classLoader is EquinoxClassLoader
... - 02:42 PM task #9189: Move datasource view to taxeditor.local
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The finish button does not seem to wor... - 02:31 PM task #9189: Move datasource view to taxeditor.local
- Katja Luther wrote:
> Andreas Müller wrote:
> > The finish button does not seem to work anymore (when using clone).... - 12:55 PM task #9189: Move datasource view to taxeditor.local
- Katja Luther wrote:
> Andreas Müller wrote:
> > The finish button does not seem to work anymore (when using clone).... - 12:00 PM task #9189: Move datasource view to taxeditor.local
- Andreas Müller wrote:
> The finish button does not seem to work anymore (when using clone).
This is caused by jav... - 11:50 AM task #9189: Move datasource view to taxeditor.local
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The "New" button is missing.
> >
> ... - 11:49 AM task #9189: Move datasource view to taxeditor.local
- Andreas Müller wrote:
> Entering a name (or other information) now is very fast. It was slow before because I think ... - 11:37 AM task #9189: Move datasource view to taxeditor.local
- Katja Luther wrote:
> Andreas Müller wrote:
> > The "New" button is missing.
>
> Shouldn't the new button should... - 11:26 AM task #9189: Move datasource view to taxeditor.local
- Entering a name (or other information) now is very fast. It was slow before because I think there was always done som...
- 11:20 AM task #9189: Move datasource view to taxeditor.local
- Andreas Müller wrote:
> The "New" button is missing.
Shouldn't the new button should be removed in #9119? - 11:17 AM task #9189: Move datasource view to taxeditor.local
- The finish button does not seem to work anymore (when using clone).
- 11:14 AM task #9189 (Feedback): Move datasource view to taxeditor.local
- The "New" button is missing.
- 11:12 AM task #9189: Move datasource view to taxeditor.local
- Title translations are missing:
 - 04:39 PM bug #8851: display of name facts not appropriate in all cases
- Walter, can you have a look after the next release, if this is now all correct?
- 02:16 PM bug #8851 (Closed): display of name facts not appropriate in all cases
- 04:12 PM task #9206 (Closed): Solve cglib vs. cglib-nodep
- the dependency to `hibernate-cglib-repack` was introduced by ben on Wed Feb 25 2009.
I don't see any further need f... - 04:11 PM Revision 60942e5d (taxeditor): ref #9204, ref #9154 remove jtds and mssql from git in taxeditor.local
- 04:10 PM Revision 70ed1e1f (taxeditor): ref #9204, ref #9154 add cdmlib-remote-webapp.war to gitignore (not yet there because of renaming webapp->local
- 03:55 PM task #9219: Revert: requests with %2F in URL are rejected by apache
- to be done right after the release 5.18 is deployed to our servers
- 03:50 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- updating description with latest TODOs
- 03:47 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- .. and another one:
TODO: The methods `OccurrenceServiceImpl._findFieldUnitDTO` and `OccurrenceServiceImpl.findFie... - 03:07 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- more TODO:
revise commented code and clean up - 03:46 PM Revision 99996219 (taxeditor): ref #9204 remove H2, postgresql and mysql fully from taxeditor.cdmlib
- 03:41 PM task #8458 (Closed): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- 03:41 PM task #8458 (Resolved): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- Applied in changeset commit:cdmlib|a20e6aec783ee2e911e75f315e0c9e0137c2e7e7.
- 03:41 PM Revision a20e6aec (cdmlib): fix #8458 documenting FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- 03:21 PM Revision 4e6b7379 (taxeditor): ref #9204 remove postgresql and mysql connector from taxeditor.cdmlib pom (cont.)
- 03:18 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Katja Luther wrote:
> Andreas Müller wrote:
> > Can we remove "Inapplicable IF" and "Only applicable if" for all te... - 01:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Can we remove "Inapplicable IF" and "Only applicable if" for all term trees except for those... - 12:34 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
- Can we remove "Inapplicable IF" and "Only applicable if" for all term trees except for those having term type "Featur...
- 11:59 AM bug #8774: Reimplement term tree editors to implement the general save strategy
But this should be done immediately:
Rename menu entry "Term Tree Editor" to "Term Trees" as it is inconsistent ...- 11:56 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- I moved the open menu items to #9338
- 08:44 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- I think all issues are fixed. Only the wrong position for a short time (#9337) and handling of flat trees still open ...
- 03:16 PM Revision 47d8963b (taxeditor): ref #9204 remove postgresql and mysql connector from taxeditor.cdmlib pom
- 03:14 PM task #8635 (Closed): install collectd + facette for server monitoring
- this is now fairly complete. the ticket is linked from the [[ServerAdministration]] wiki page, so it can be closed
- 02:54 PM task #8419 (In Progress): Harmonization of the different specimen representations
- work still in progress, moving ticket to next milestone
- 02:53 PM task #8379: Review strange specimen implementations
- TODO: final check
- 02:28 PM Revision 8a79d625 (taxeditor): ref #9204 add jtds and mssql-jdbc-8.4.1.jre8 to gitignore
- 02:26 PM Revision 73192ab3 (taxeditor): ref #9204 remove some cdmlib-dbs from git and upgrade postgresql version
- 02:18 PM task #9265 (Closed): Adapt dataportal to new protologue handling
- now that #8851 is solved the functionality which has been removed while working on this ticket is restored, so we c...
- 02:13 PM Revision d9fa5913 (cdmlib): ref #8851 extednding init strategy for name descriptions by sources and annotations
- 02:11 PM Revision c11fa375 (cdm-dataportal): ref #8851 sources and annotations to name descriptions with test
- 01:45 PM Revision 233ae205 (cdmlib): ref #9204 upgrade postgresql driver to latest version
- 01:39 PM Revision 860adb95 (taxeditor): rename termtree editors to term trees in menu
- 01:38 PM Revision a3a44561 (cdmlib): move mchange-commons-java version to parent pom
- 01:30 PM Revision 5c44e322 (taxeditor): ref #9189: harmonize l10n files
- 01:28 PM Revision 59174ab0 (cdmlib): ref #4866, ref #9228 implement subtree clone in branch
- 12:18 PM bug #8522: Make type status mandatory in Name type designation editor
- Note: A name type might be a status only that is not in the dropdown list, such as:
conserved type
rejected type
t... - 11:55 AM feature request #9338: Restructure term menus
- I put milestone to 5.19 as it belongs to #8774 content wise.
- 11:55 AM feature request #9338 (Closed): Restructure term menus
- We now have the vocabulary menu and the term tree menu. Both look very different but should look similar.
To me it... - 11:30 AM feature request #9326: Show all authors in bibliographic references
- this is rather a question of how the cache strategy. Therefore I am changing category and assignee accordingly
- 10:57 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- ~~Another minor issue: could we move "Original Information" above ID Namespace and ID in Source. It is probably more ...
- 10:56 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- NPE when editing a lectotype source
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/r... - 10:52 AM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- The space between URI and type (in external links could be a bit smaller and therefore a bit more space between type ...
- 10:51 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Sometimes the nomenclatural source still shows "No external link" yet instead of no protologue yet.
: ref #8851 adapting side-effected NameRelationshipsTest
- 05:33 PM Revision f06c22c7 (cdm-dataportal): ref #8851 adding missing space
- 05:23 PM Revision 79bd5456 (cdm-dataportal): ref #8851 adapting test for name desciptions
- 05:14 PM Revision e024a603 (cdm-dataportal): ref #8851, ref #9265 improved re-implementation of name desciptions (annotations and sources still pending)
- 04:54 PM bug #8851: display of name facts not appropriate in all cases
- to query for relevant data:
~~~sql
SELECT db.DTYPE, db.id, feature.titleCache, deb.DTYPE, osb.id, osb.citation_id... - 03:51 PM feature request #9337 (Closed): Open issues for reimplementation of termtree editors
- copied from #8774
1. ~~Show supplemental data (IMPORTANT)~~(actually only for nodes)
2. For a very short time ... - 03:42 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> When adding/removing terms the tree should stay expanded. Currently it collapses and you hav... - 02:42 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> There is still camle case in the label
>
> 
this is fixed - 10:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > The duplicate check should be done w... - 03:40 PM Revision 0e21282a (cdmlib): ref #8774: save term tree titleCache
- 03:25 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
- now I found the missing bit.
In commit:cdm-dataportal|f9b5740e33ff94ab9e1703774379f5d67d103649 the apparently imc... - 01:08 PM task #9265 (Closed): Adapt dataportal to new protologue handling
- cant see that there is still something missing and thus closing this ticket
- 02:55 PM bug #9103 (Closed): missing exception handling in TaxoNodeDto
- the last commit fixes the potential NPE that was in the code after the previous commit. The code looks ok now and the...
- 01:06 PM bug #9103: missing exception handling in TaxoNodeDto
- Andreas Kohlbecker wrote:
> Katja Luther wrote:
> > the null check for the classification is missing, the rest seem... - 12:13 PM bug #9103: missing exception handling in TaxoNodeDto
- Katja Luther wrote:
> the null check for the classification is missing, the rest seems to be correct.
Good point,... - 11:56 AM bug #9103 (Feedback): missing exception handling in TaxoNodeDto
- the null check for the classification is missing, the rest seems to be correct.
- 02:47 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- Katja Luther wrote:
> The type of the in-reference depends on ReferenceType.inReferenceContraints, we should add the... - 02:33 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- Andreas Müller wrote:
> I got the following NPE when playing around with the dialog:
>
> ~~~
>
This should b... - 02:16 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- The type of the in-reference depends on ReferenceType.inReferenceContraints, we should add the constraints mentioned ...
- 02:30 PM bug #6623 (Closed): formatter for bibliografic citations with citationDetail
- I am pretty sure that this was a requirement for the TypeDesignationManager which was composing References + referen...
- 02:29 PM Revision b5fdbda7 (taxeditor): avoid NPE
- 02:04 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- the issue has been fixed in #9318, so we can close this ticket again.
- 01:45 PM feature request #9336 (New): Serverside preference for last used references
- ERS:
eine weitere Auffälligkeit:
bei der Auswahl von Referenzen für Faktendaten (in meinem Fall für Verbreitung... - 01:39 PM Revision da9e29c4 (cdmlib): ref #9103: add handling of classifications in TaxonnodeDto - continue
- 01:24 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- there are two open FIXMEs in the method:
~~~
// FIXME defining propertyPaths inside of transactional service meth... - 01:17 PM Revision 6706afc3 (cdmlib): ref #9103: add handling of classifications in TaxonnodeDto
- 01:12 PM bug #9220 (Closed): adapt dataportal to /registrationDTO now using identifier as query parameter and secure against CVE-2007-0450 vulnerability
- 01:11 PM bug #9218 (Closed): Change /registrationDTO/identifier/... signatures to use query parameters instead
- can be closed now that remaining tasks are copied to #9275
- 01:09 PM bug #9318 (Closed): TaxonNameEditor: nomenclatural reference no longer selectable
- 01:06 PM task #9222 (Closed): Adapt dataportal to switch to originalSource for remaining single sourced classes
- 12:49 PM Revision 87caa5aa (taxeditor): ref #8774: adapt to termNodeDto changes
- 12:37 PM feature request #4754: Implement webservice to get the date of the last change or to check if there are any changes since a certain date
- BTW: this is the relevant method in the AbstractOaiPmhController: `eu.etaxonomy.cdm.remote.controller.oaipmh.Abstract...
- 12:09 PM Revision 94959be3 (cdmlib): ref #9103 adding missing null check
- 12:06 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- Andreas Müller wrote:
> so can we close the ticket?
yes. - 12:06 PM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
- 12:02 PM task #9189: Move datasource view to taxeditor.local
- yes, please check whether everything still works.
- 12:00 PM Revision e1397e51 (cdmlib): cleanup
- 11:59 AM bug #8174: First test fails if term data is in loaded DataSet
- Andreas Kohlbecker wrote:
> I think we should go for option 3) that is to remove TestingTermInitializer and to rely ... - 11:48 AM Revision 79221c91 (cdm-dataportal): ref #9279 adapting test to modified output of the TypeDesignationSetManager
- 11:33 AM Revision 758cf8ed (cdmlib): Adapt javadoc for TypeDesignationBase
- 11:00 AM Revision 7c5f89b4 (cdmlib): ref #8774: avoid NPE in termNodeDto
- 10:58 AM task #9228 (In Progress): Adaptations to allow editing Centaurea in Flora of Greece
- 09:41 AM feature request #9192: Layout issues for source in taxonnode details
- I think the only thing still open, is the gap on top of the expandable element. I move this to 5.19 because it is not...
- 09:37 AM Revision 69bed327 (taxeditor): fix #9199: layout issues in nomenclatural source details and external links
- 09:37 AM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Applied in changeset commit:taxeditor|69bed327b7a5028e5f904ffe9ac8cca1d01a20e9.
- 09:26 AM bug #9257: revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- Andreas Kohlbecker wrote:
> Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type... - 09:18 AM feature request #9299 (Closed): Add LSID to author and reference details
- the issues mentioned above are solved, so I close this ticket
11/27/2020
- 07:22 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel()
- This has been fixed. As all code compiles now I think review is not necessary. Please review if you think it is needed.
- 07:20 PM Revision e522c53f (taxeditor): remove unwanted commit
- 07:20 PM Revision cc7051ed (taxeditor): ref #9280 adapt TaxEditor to new Term.getLabel() (cont. 2)
- 07:16 PM Revision 2a7ad236 (taxeditor): ref #9280 adapt TaxEditor to new Term.getLabel() (cont.)
- 07:08 PM Revision 137d0ad0 (taxeditor): ref #9280 adapt TaxEditor to new Term.getLabel()
- 07:08 PM Revision 4e6a6782 (taxeditor): cleanup
- 06:33 PM bug #9322 (Resolved): Remove invalid designation taxon relationship
- This is generally fixed. Only in integration_reference there is still 1 record left (mail sent to AK).
After relea... - 06:28 PM Revision 340adc01 (cdmlib-apps): ref #9280 adapt appimport to new Term.getLabel()
- 06:27 PM Revision 82fc7e6e (cdmlib-apps): ref #9322 adapt BerlinModelOccurrenceSourceImport to removed Invalid Designation
- 06:24 PM Revision 18620ac6 (cdmlib): ref #9280 rename IKeyTerm.getMessage() => .getLabel()
- 05:47 PM Revision 0d1aca12 (cdmlib): cleanup
- 05:33 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- Andreas Müller wrote:
> For "Section" the type is "InProceedings" now which is generally false. We should use "Gener... - 05:26 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- I got the following NPE when playing around with the dialog:
~~~
last remote method : http://test.e-taxonomy.eu... - 05:25 PM bug #8547 (Feedback): Default type of a newly created inReference should depend on the type of the reference
- For "Section" the type is "InProceedings" now which is generally false. We should use "General" as before or even bet...
- 04:24 PM feature request #5795 (Closed): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
- It has been added now. So I close the ticket.
- 04:23 PM feature request #6589 (Closed): Handle protologue as original source with URI link
- I think we can close this ticket.
- 04:21 PM bug #8326 (Closed): update labels for is blocking name and is isonym
- 04:18 PM bug #9335 (Closed): termTree webservice response misses titleCache
- 03:40 PM bug #9335 (In Progress): termTree webservice response misses titleCache
- 02:31 PM bug #9335 (Feedback): termTree webservice response misses titleCache
- There were no changes/commits for long time on the above tickets. So I don't think it is related.
Maybe related to... - 02:20 PM bug #9335 (Closed): termTree webservice response misses titleCache
1. termTree webservice response misses the titleCache field
1. ~~there is evidence for that the order of the terms...- 04:14 PM bug #9124 (Closed): Altitude feature should have [m] as measurement unit by default
- 04:14 PM bug #9124: Altitude feature should have [m] as measurement unit by default
- I expect this to work so I close the ticket.
- 03:53 PM bug #9124: Altitude feature should have [m] as measurement unit by default
- I tested on test and integration. The result looks fine. But we should also run on production once after the release ...
- 04:13 PM task #9062 (Closed): Remove StatisticalMeasurementValue.value_old
- Is fixed.
- 04:11 PM task #9082 (Closed): Update script for old empty Partials handling
- 04:07 PM Revision 2347bf25 (cdmlib): ref #9335 creating fallback representation for Terms in TermBaseBeanProcessor - bug fix
- 04:06 PM task #9094 (Closed): Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource
- This is fixed
- 04:00 PM task #9120: Update script for flowering period supports temporal data
- ~~~sql
SELECT *
FROM DefinedTermBase dtb
WHERE dtb.supportedDataTypes LIKE '%#TED#%'
~~~ - 03:59 PM task #9120 (Closed): Update script for flowering period supports temporal data
- This is fixed on test and integration databases.
- 03:55 PM feature request #9121 (Closed): Add abbreviations to Feature
- I think we can close this ticket. Looks like it works. We could test on production, but as it not really critical, th...
- 03:50 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
- By the way, as the above action is a taxon split, in future there will be the need of more user interaction during th...
- 03:42 PM bug #9267 (Feedback): No sec reference for move change Synonym to accepted Taxon
- The above requirement works as expected but I do not fully agree to the requirement. I think we discussed this some t...
- 03:49 PM Revision d8001ede (cdm-dataportal): ref #9335 using term representation instead of titleCache
- 03:48 PM Revision f86bb6df (cdm-dataportal): removing before protologue icon to conform to test assertions§
- 03:45 PM Revision f9a4a64f (cdmlib): ref #9335 creating fallback representation for Terms in TermBaseBeanProcessor - 2
- 03:43 PM Revision 82885917 (cdmlib): ref #9335 creating fallback representation for Terms in TermBaseBeanProcessor
- 02:01 PM feature request #9282: Add nomenclatural standing
- This generally works and can be closed. A final update script still needs to run to change handling of nom. confus. a...
- 01:57 PM feature request #4644 (New): json lib incorrectly serializes values containig the characters [, ], {, }
- the above mentioned commit had to be reverted, so this issue is open again
- 01:29 PM Revision a75434dd (cdm-vaadin): aqdapting to RegistrationDTO typifiedName as non-property
- 12:52 PM Revision f2198885 (cdmlib): ref #9265 removing NomenclaturalSourceBeanProcessor since it causes many hard to controll LazyInitializationExcptions in web services
- 12:51 PM task #6591 (Closed): Use name used in source for original spelling
- I think this works and can be closed.
- 12:49 PM Revision 0188f3d8 (cdmlib): typo
- 12:45 PM Revision 9c96ba36 (cdm-dataportal): ref #9265 reverting to old nomRef retrival strategy and fixing bugs
- 12:45 PM bug #8776 (New): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Now the duplicates are checked on editor side and the message dialog shows which terms can not be added because they ...
- 11:38 AM bug #8776 (In Progress): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Looks like this is partly fixed already (at least first part of first issue). As it is related to #8774 we should try...
- 12:44 PM Revision a3e8d11d (taxeditor): ref #8774: show which terms are duplicates in dialog
- 12:36 PM task #5856 (Rejected): [DISCUSS] Consider implemeting additional name relationships
- So I mixed it up. This is on implementation in **dataportal**.
However, I think if name relationships are all show... - 12:21 PM task #3967 (Duplicate): Rethink original spelling strategy
- This is a duplicate for #6591
- 12:06 PM feature request #9194 (Closed): Make RelationshipBase and NomenclaturalStatus reference OriginalSource
- This is fixed. I checked the update script result against some test databases. Looks ok (for hybrid relations I did n...
- 11:58 AM Revision 8bc96896 (cdm-dataportal): Revert "ref #9265 getting citationDetail from NomenclaturalSource"
- This reverts commit d5de0b1f6ed6901d71ccdb8a5a9b44805f907bf0.
- 11:49 AM Revision c9d0cb80 (taxeditor): ref #8774: update of termtree editor after creating/removing tree
- 11:35 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Andreas Müller wrote:
> > The duplicate check should be done when adding the term not only ... - 11:22 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Andreas Müller wrote:
> > It is now possible to open 2 term tree Editors of the same type. ... - 11:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Can we still Change the menu that way that we have Vocabularies i... - 11:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Similar to the duplicates issue a term tree can be "flat". In this case adding a child to a ... - 09:23 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Similar to the duplicates issue a term tree can be "flat". In this case adding a child to a term node should not be a...
- 09:20 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> The duplicate check should be done when adding the term not only when saving it.
>
> this... - 09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- There is still camle case in the label
 - 08:52 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named... - 08:51 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an... - 08:47 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> It is now possible to open 2 term tree Editors of the same type. This is not wanted as a ter... - 08:38 AM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
- When moving a term up in feature tree via d&d
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem... - 11:20 AM Revision 695b1de9 (taxeditor): remove camel case
- 11:12 AM feature request #9307 (Closed): Preferences for display of termtrees and entries
- 09:11 AM feature request #9307: Preferences for display of termtrees and entries
- I guess this is for final review again.
- 08:45 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
- Applied in changeset commit:taxeditor|9d517193984ee588d4ee88484ddc791710ce613c.
- 08:41 AM feature request #9307: Preferences for display of termtrees and entries
- The functionality itself works. So, when the label is fixed, the ticket can be closed.
- 08:32 AM feature request #9307 (Feedback): Preferences for display of termtrees and entries
- The label still does not work
 - 11:07 AM Revision 14417ce8 (taxeditor): ref #8774: move all term editor menu items to vocabularies
- 10:55 AM Revision 0307d72a (taxeditor): ref #8774: open termTree editors only once
- 10:52 AM Revision 6b891987 (cdmlib): code cleaning and improving documentation
- 10:51 AM Revision 2315a55d (cdmlib): RegistrationDTO: typifiedName as non-property
- 10:21 AM Revision 06fba5d3 (cdm-dataportal): typo
- 09:09 AM feature request #9287: Show term details in details view of term tree editor
- Maybe we do not need to load the data with the initial DTO but asynchronously when ever it is needed. Just in case lo...
- 08:55 AM feature request #9287: Show term details in details view of term tree editor
- As this is related to #8774 I move it to current milestone as we should implement it soon (might also be an interesti...
- 08:45 AM Revision 9d517193 (taxeditor): fix #9307: add missing translation#
- 08:20 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Another layout issue somehow related: In external link, can we move the URI to the top and the type below URI? URI is...
- 08:17 AM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- But it should be adapted for all single sources like for TaxonNode.source. So indentation is needed everywhere, excep...
- 08:14 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Yes, this looks much better. Only for nom. sources "more" is still bold. Can you adapt it there, too?
11/26/2020
- 04:02 PM Revision 9c6a5661 (taxeditor): smaller layout issue in specimenSelectionDialog for character matrix
- 03:46 PM Revision 52d904ba (taxeditor): remove protologue detail files
- 03:45 PM Revision e5df12cf (taxeditor): remove merge comment
- 02:58 PM Revision 96a59002 (taxeditor): merge issues
- 02:54 PM Revision b1a6925c (taxeditor): ref #9299: layout issues
- 02:54 PM Revision aab656a8 (taxeditor): layout issues for single source elements
- 02:27 PM bug #9334 (New): Show error message when feature tree can not be shown because of dirty data
- see #8774#note-32
- 02:22 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- For the missing feedback I create a new ticket, can we close this ticket?
- 02:21 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- I think this is fixed now. Please review.
- 01:05 PM Revision aae9aefe (cdm-dataportal): spanish translation Type->Tipo
- 12:54 PM task #9266 (Closed): Remove protologue section from TaxEditor
- 09:32 AM task #9266 (Resolved): Remove protologue section from TaxEditor
- 09:31 AM task #9266: Remove protologue section from TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > >
> > > Maybe we could even use the above preference to show or n... - 11:17 AM Revision beb7ecbe (cdm-dataportal): ref #9265 adapting test to improved nomRef citation string generation
- 11:12 AM Revision f00c6f98 (cdm-dataportal): ref #9279 adapting class attribute handling to TypeDesignationDTO
- 10:21 AM feature request #9225 (Closed): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
- yes I also think that this ticket can be closed.
There might be still some cases in which LIEs might pop up but thes... - 09:31 AM feature request #9333 (New): Preference for display of protologue section in nomenclatural source section
- from #9266:
The protologue section should also be removed from local and DB preferences I guess as it probably has...
11/25/2020
- 10:48 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- so can we close the ticket?
- 10:46 PM feature request #9192 (Feedback): Layout issues for source in taxonnode details
- Are these still open issues. To me it looks like most of it is solved somehow. But maybe I do not understand some of ...
- 10:40 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- ... for TaxonNodes.source we should keep indentation of "more" as it is followed by "Related persons"
- 10:36 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Can we adapt single source layout according to nomenclatural source layout?
So we
* move External Link up and... - 09:54 PM feature request #9332 (Closed): Rename TypeDesignationBase.source to .designationSource
- as simple "source" creates confusion as there are also the general sources attached to TypeDesignationBase.
- 09:37 PM feature request #6581 (Closed): Make all microreferenced references OriginalSources
- I think we can close this ticket now. Please reopen if you think there is still something open that is not yet handle...
- 09:32 PM feature request #9331 (Closed): Distinguish DescriptionElementSource and NamedSource
- ... NamedSource is now used in more cases and DescriptionElementSource should have a backlink to DescriptionElement
... - 09:24 PM task #9330 (Closed): Remove "NomenclaturalSource" from OriginalSourceType
- As nomenclatural sources now have there own subclass PrimaryTaxonomicSource is enough for nomenclatural sources.
H... - 09:14 PM Revision dba500e8 (cdmlib): ref #6623 include microReference in DefaultReferenceCacheStrategy.getCitation(...) (cont.)
- 08:59 PM bug #6623 (Resolved): formatter for bibliografic citations with citationDetail
- This should be something like DefaultReferenceCacheStrategy.getNomenclaturalCitation(Reference, String) but for bibli...
- 08:58 PM Revision da04d3c7 (cdmlib): ref #6623 include microReference in DefaultReferenceCacheStrategy.getCitation(...)
- 08:55 PM Revision 3107f6d9 (cdmlib): cleanup
- 08:16 PM feature request #9194 (Resolved): Make RelationshipBase and NomenclaturalStatus reference OriginalSource
- I guess this is fixed as we use it already in TaxEditor
- 08:10 PM feature request #9329 (Closed): Implement sec reference as original source in dataportal
- This is a remaining issue from #9222 as model change is required first.
Also have in mind to adapt jsonConfigura... - 08:08 PM feature request #9328 (Closed): Adapt Editor to switch to originalSource for taxon secundum
- This is the remaining issue from #9199.
Requires model implementation #9327 - 08:07 PM feature request #9327 (Closed): Make taxon secundum reference an original source
- copied from #6581
- 08:04 PM feature request #9326: Show all authors in bibliographic references
- The third screen shot shows a (new?) truncation of a long title. Looks not bad but is not correct. In this case Fragi...
- 08:02 PM feature request #9326 (Closed): Show all authors in bibliographic references
- In PhycoBank it is necessary to show a complete reference including all bibliographical authors. This is also relevan...
- 08:01 PM Revision 22ac5dcd (cdmlib): change name for TaggedEntityReference
- 07:29 PM feature request #9325 (Duplicate): Enable section in specimen type designation
- The idea is to select or create a section for the typification (of the name we are coming from). Might be necessary f...
- 07:15 PM feature request #9324 (Closed): Enable designation reference editing in name type designation
Main issues:
6: enable to select an available section (new names) or create a new section (for e.g. lecto- or n...- 06:35 PM bug #9322: Remove invalid designation taxon relationship
- Find possible cases:
~~~sql
SELECT tr.id, tb1.titleCache fromx , tb2.titleCache tox, tr.*
FROM TaxonRelationship... - 02:38 PM bug #9322 (Closed): Remove invalid designation taxon relationship
- Invalid designations are simply names which are not valid and therefore are called "designations" only not "names".
... - 06:21 PM Revision 7f5fe60c (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relationship (cont. 3)
- 06:15 PM Revision a647b46a (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relationship (cont. 2)
- 06:10 PM Revision 86b95854 (cdm-dataportal): ref #9279 using taggedText in TypeDesignationDTO in portal
- 06:08 PM Revision d8417735 (cdmlib): ref #9279 TypeDesignationDTO basing on new class RepresentableEntityReference
- 06:07 PM Revision 562f293f (cdmlib): ref #9265 making use of nomenclaturalSource->nomenclaturalCitation - extending initStrategy
- 05:53 PM Revision adbd3997 (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relationship (cont.)
- 05:49 PM Revision d9853ce6 (cdm-vaadin): cleanup
- 05:49 PM Revision 8cf3ca0a (cdm-vaadin): ref #9322 adapt vaadin to removed invalid designation relationship
- 05:46 PM Revision e2771053 (cdm-dataportal): ref #9279 adding TypeDesignationDTO to cdm_ws_base_uri()
- 05:46 PM Revision 11358be4 (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relationship
- 05:25 PM Revision e4c8c2c8 (cdmlib): cleanup
- 05:25 PM Revision 1ffd1c27 (cdmlib): ref #9322 remove invalid designation relationship from cdmlib
- 05:09 PM Revision 4fa58f06 (cdm-dataportal): ref #9265 making use of nomenclaturalSource->nomenclaturalCitation
- 05:08 PM feature request #4644 (Rejected): json lib incorrectly serializes values containig the characters [, ], {, }
- this is no longer relevant since we no longer need to get the microreference separately commit:aa06c1f1a2
The hack... - 05:06 PM Revision aa06c1f1 (cdmlib): ref #9265 introducing NomenclaturalSourceBeanProcessor to add nomenclaturalCitation to web service responses
- 03:16 PM task #9222 (Resolved): Adapt dataportal to switch to originalSource for remaining single sourced classes
- this should be mainly fixed, only needs final review
- 03:06 PM task #8275 (Worksforme): [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- AM:
Es gibt noch das Ticket #8275 , welches ich erstellt habe, als ich noch nicht so genau wußte, was es mit der A... - 03:04 PM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- Andreas Müller wrote:
> All invalid names (term ids may need to be adapted)
I think this is handled sufficiently ... - 03:03 PM task #9265 (Resolved): Adapt dataportal to new protologue handling
- 03:03 PM task #9265: Adapt dataportal to new protologue handling
- new ticket for discussion on display of ExternalLink.description: #9323
- 12:25 PM task #9265: Adapt dataportal to new protologue handling
- Andreas Kohlbecker wrote:
> this is basically implemented, tests are pending.
>
> One question in advance: Extern... - 03:01 PM task #9323 (New): discuss display of ExternalLink.description
- ExternalLink has the property description, how should this be handled in case of the protologues? I suggest using foo...
- 02:57 PM Revision 61e84a73 (cdmlib): ref #9265 implementing protologueLinks web service
- 02:53 PM Revision a8393f17 (cdm-dataportal): ref #9265 implementing test for nom-ref and protologues, also preparing for ref #9319 - 2
- 02:46 PM Revision c11d7e10 (cdm-dataportal): ref #9265 implementing test for nom-ref and protologues, also preparing for ref #9319
- 02:42 PM task #8055 (Rejected): Correct formatting for invalid designations
- As Invalid Designation relationships are not supported anymore (as they are incorrect, #9322) this ticket can be clos...
- 02:18 PM Revision 180653b7 (taxeditor): remove create/change to invalid designation handler
- 02:14 PM Revision 99a52e55 (cdmlib): ref #9282 fix NPE in nomenclaturalStanding computation
- 01:51 PM Revision d5de0b1f (cdm-dataportal): ref #9265 getting citationDetail from NomenclaturalSource
- 01:22 PM feature request #9321 (New): Make availability of pro-parte synonyms configurable
- Mostly pro parte synonyms should not be created in TaxEditor, therefore it should be configurable whether the menu it...
- 12:25 PM Revision ceeaac02 (taxeditor): fix microreference saving
- 12:20 PM bug #9241: replace/adapt descriptionPart in render templated
- I guess this should be done shortly after the current release so I put it to the current milestone for now so we do n...
- 12:18 PM feature request #9225: Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
- Andreas Müller wrote:
> I think the vaadin test are now fixed (?). So can we close this ticket?
?? - 12:17 PM task #9266: Remove protologue section from TaxEditor
- Katja Luther wrote:
> >
> > Maybe we could even use the above preference to show or not show the external link sec... - 12:12 PM feature request #9320 (In Progress): Move additional publication information to nomenclatural source
- copied from #6589 (see discussion starting at #6589#note-24)
Currently it is stored as name description but the da... - 12:04 PM feature request #6589: Handle protologue as original source with URI link
- Andreas Kohlbecker wrote:
> Interesting, that the UUID is different from that in the data portal code ('cb2eab09-6d9... - 10:58 AM feature request #6589: Handle protologue as original source with URI link
- also in
* cdm_production_cichorieae
* cdm_production_euromed
* cdm_production_euromed_caucasus
* cdm_productio... - 10:44 AM feature request #6589: Handle protologue as original source with URI link
- Interesting, that the UUID is different from that in the data portal code ('cb2eab09-6d9d-4e43-8ad2-873f23400930').
... - 10:37 AM Revision 8d86ce45 (taxeditor): smaller layout issues and avoid NPE
- 09:42 AM Revision 1ac5fff7 (cdmlib): avoid NPE and CCE
11/24/2020
- 11:04 PM Revision 1918f07a (cdmlib): ref #9279 fix TypedEntity for source
- 10:36 PM feature request #6589: Handle protologue as original source with URI link
- Additional Publications do definetely exist, e.g. in E+M or caryo_spp
~~~sql
SELECT db.DTYPE, db.id, feature.titl... - 09:54 PM feature request #6589: Handle protologue as original source with URI link
- I found a special case in the data portal code for the feature:
~~~
UUID_ADDITIONAL_PUBLICATION = 'cb2eab09-6d9d-... - 10:34 PM task #9265 (Feedback): Adapt dataportal to new protologue handling
- this is basically implemented, tests are pending.
One question in advance: ExternalLink has the property `descript... - 10:26 PM Revision df2b235a (cdm-dataportal): ref #9265 switching to NomenclaturalSource.links for protologues - comment
- 10:16 PM Revision f9b5740e (cdm-dataportal): ref #9265 switching to NomenclaturalSource.links for protologues
- 10:12 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable
- Reference selectable for basionym, replaced synonym, and validation. The ticket can be closed.
- 05:18 PM bug #9318 (Resolved): TaxonNameEditor: nomenclatural reference no longer selectable
- this should be fixed now, can you please review?
- 05:17 PM bug #9318 (In Progress): TaxonNameEditor: nomenclatural reference no longer selectable
- 05:13 PM bug #9318 (Duplicate): TaxonNameEditor: nomenclatural reference no longer selectable
- 05:10 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable
- this is actually a bug introduced with #9229 - implementation was incomplete.
- 04:49 PM bug #9318 (Closed): TaxonNameEditor: nomenclatural reference no longer selectable
- after the changes that turn the nomenclatural reference into a `DescriptionElementSource` (#9225, #6581) the nomencla...
- 09:58 PM Revision 27a6e8d7 (cdmlib): ref #9279 add TypedEntities to TypeDesignationDTO
- 09:57 PM Revision 2fb2834c (cdmlib): cleanup
- 09:45 PM Revision a0ab64df (cdm-dataportal): ref #9279 adapt orderdTypeDesig type in cdmdataportal
- 08:55 PM Revision d38359c9 (cdm-vaadin): ref #9279 fix type and improve generics for TypedEntityReference (vaadin, cont.)
- 08:51 PM Revision 47f6500b (cdmlib): ref #9279 use RegistrationDTO instead of TypedEntityReference for TypeDesignations
- 08:36 PM Revision 7f1705a9 (cdmlib): cleanup
- 07:30 PM Revision 6d344620 (cdmlib): ref #9279 fix make WorkingSet a Map again and cleanup
- 07:04 PM task #9319 (New): adapt name render templates to new nomenclatural source which also contain protologues as external links
- 1. The render templates still refer to the old model in which protologues have been handled via name descriptions.
2... - 06:56 PM Revision 32955f5b (cdmlib): ref #9279 make WorkingSet a Map again and fix typo in RegistrationDTO attribute and fix jsonConfigurations
- 06:23 PM Revision cbe1466f (cdm-vaadin): ref #9279 improve generics for TypedEntityReference (vaadin)
- 06:23 PM Revision de5e3f7c (cdm-vaadin): ref #9279 extract TypeDesignationWorkingSet as top level class and some cleanup (vaadin)
- 06:16 PM Revision c386f139 (cdmlib): ref #9279 improve generics for TypedEntityReference
- 05:31 PM Revision 7471539c (cdmlib): ref #9279 separate formatting from TypeDesignationSetManager and extract TypeDesignationWorkingSet as top level class and some cleanup
- 05:17 PM Revision c1c4b55f (cdm-vaadin): ref #9318 fixing problem with NomenclaturalSource selection in TaxonNameEditor
- 05:12 PM feature request #9229 (In Progress): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- reopening since this implementation is incomplete, see #9318
- 03:14 PM Revision a5a8be33 (taxeditor): ref #8769: move source ref to configuration wizard
- 03:00 PM Revision 842cd0b7 (cdmlib): cleanup
- 02:58 PM Revision 5c5865f6 (taxeditor): ref #8769: structure the configuration elements - add source
- 02:39 PM feature request #8769: Biocase import configuration should be shown when clicking on import button
- the wizard is structured in the way described above.
- 12:55 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking on import button
- 12:55 PM feature request #8769: Biocase import configuration should be shown when clicking on import button
- now the configuration dialog is opened with every click on import and the classifiction is added to the config wizard.
- 02:36 PM Revision a63e71bd (taxeditor): ref #8769: structure the configuration elements
- 02:35 PM Revision 5ca40190 (cdmlib): ref #9279 remove redundant typifiedNameRef (TypedEntityReference) and cleanup
- 12:57 PM Revision 19793be6 (cdmlib): cleanup
- 12:56 PM Revision f1145594 (cdmlib): ref #9282 adapt dataset.dtd to NomenclaturalStanding
- 12:23 PM Revision 7b5149a3 (cdmlib): preliminary fix compile error in SchemaUpdater_5185_5186
- 12:18 PM Revision 9d43b70b (cdmlib): cleanup
- 12:16 PM Revision c14761c5 (cdmlib): ref #9272 remove invalid state from nom. ambig. and nom. confus.
- 12:13 PM Revision 0edc55f4 (cdmlib): ref #9272, ref #5794 adapt taxon ordering to nomenclatural standing
- 12:13 PM Revision 1d9b1314 (cdmlib): cleanup
- 11:50 AM Revision e84897d0 (taxeditor): adapt biocase import views
- 11:44 AM Revision 3370888f (cdmlib): add termNodeDto to list of terms of termTreeDto
- 11:36 AM Revision 8ae425dd (cdmlib): add classification to config string
- 11:00 AM Revision d0b9755a (taxeditor): ref #9266: layout issues
- 10:37 AM feature request #5795: [DISCUSS] Do we need comb. ined. as a nomenclatural status?
- The status has been implemented a couple of years ago so
- 08:54 AM Revision 196b09e5 (taxeditor): ref #9266: remove more section in nomenclatural source and keep protologue label
- 08:38 AM Revision ccdf755b (taxeditor): remove max number of elements in combo boxes
11/23/2020
- 10:12 PM Revision 9e82c512 (cdmlib): ref #9279 remove redundant string and TaggedText computing and fix post separator for names type sets
- 10:10 PM Revision 88317626 (cdmlib): cleanup
- 09:14 PM Revision 317bee5c (cdmlib): cleanup
- 08:24 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
- As this is a milestone interal ticket only I remove the target version
- 01:04 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
- confirmed! the commit:374e76ca85 for #6581 fixes this issue
- 04:06 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
- There is no specific web service for protologues so only the dataportal needs to be adapted.
- 02:10 PM bug #8833 (Duplicate): distribution editor: Exception when filtering by taxon
- tested at the example of http://test.e-taxonomy.eu/cdmserver/cichorieae/app/distribution#!distGrid
could not repro... - 01:17 PM bug #9317 (In Progress): Handle NameTypeDesignations on name basis not on homotypic group basis in outputs
- WGB:
Bei Gattungen und infragenerischen Rangstufen, die auf anderen Namen basieren wird [...] eine Kombination (Ar... - 09:56 AM feature request #9316: Add preference to define number of initialy shown elements in drop down menus
- As such dropdowns exist at many places we should have a predicate like "number of rows in dropdown" and define which ...
- 08:54 AM feature request #9316 (New): Add preference to define number of initialy shown elements in drop down menus
- mail ERS:
Bei der Auswahl des Distribution Status im Details View habe ich ein scroll-down-Menü, welches mir aber ... - 09:44 AM bug #6757 (Worksforme): AbcdImportWizard has all configurator flags set to false
- no, this is fixed in the meantime
11/20/2020
- 11:09 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- 11:08 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
- Works as expected
- 11:07 PM feature request #9299 (Feedback): Add LSID to author and reference details
- In general this is fixed.
Only issues:
* can we move URI above DOI and LSID in Reference Details View.
* can ... - 11:03 PM bug #6947 (Closed): Incorrect error for LSID field
- This works as expected
- 10:58 PM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
- This is fully fixed
- 10:47 PM feature request #9282 (Resolved): Add nomenclatural standing
- still need to update in cdmlight
- 07:07 PM feature request #9282 (In Progress): Add nomenclatural standing
- 10:44 PM bug #9312 (Resolved): NullPointerException (NPE) in TaxonNamePopupEditor
- This should be fixed with the current update script. You need to reinstall a version prior to 5.18.0 and run the upda...
- 03:34 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
- this seems to be due to a problem in the model upgrade script which misses to handle NomeclaturalSources correctly an...
- 01:51 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
- beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s...
- 10:07 PM feature request #5795 (Resolved): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
- 10:00 PM Revision e394d81a (cdmlib): ref #6591 fix SingleTermRemover
- 09:18 PM Revision 53ffcb3d (cdmlib-apps): ref #9282 adapt app-import to nomenclaturalStanding
- 09:17 PM Revision 88a917f1 (cdmlib-apps): ref #6591 adapt original spelling in app-import
- 07:05 PM Revision af1ee281 (taxeditor): ref #9282 adapt TaxEditor to nomenclatural standing
- 06:32 PM Revision 8d7efe50 (taxeditor): update taxeditor to v5.18.5
- 06:26 PM Revision 358b5ee6 (cdm-vaadin): update vaadin to v5.18.5
- 06:23 PM Revision 14a6a2a9 (cdmlib): fix endSchemaVersion in SchemaUpdater_5184_5185
- 06:20 PM task #9315 (Closed): Remove old single source citation and microCitation columns
- Include all single sources from #6581
For nomenclatural source it may look like
~~~sql
//#9315 remove ... - 06:17 PM task #9314 (New): Swap 'is conserved against'
- We may think about swapping the direction of "is conserved against" .
This might be an advantage when evaluating t... - 06:09 PM Revision 1f256a93 (cdmlib): update cached model to 5.18.5
- 06:08 PM bug #8859 (Closed): RegistrationItemNameAndTypeButtons invalid regex pattern
- 06:08 PM bug #8859 (Resolved): RegistrationItemNameAndTypeButtons invalid regex pattern
- Applied in changeset commit:cdm-vaadin|2deb1814c68bd161651f888988f74b04e659a928.
- 06:08 PM Revision 2deb1814 (cdm-vaadin): fix #8859 quoting literal string before use in regex function
- 06:07 PM Revision 374e76ca (cdmlib): ref #6581 fix update script for nomenclatural sources / nomenclatural status sources
- 06:07 PM Revision 1712450e (cdmlib): finalize update script vor version 5.18.4
- 06:07 PM Revision 11a38b45 (cdmlib): ref #9311 adapt name parser to updated nom status labels
- 06:07 PM Revision cc259f91 (cdmlib): minor
- 06:07 PM Revision 0f9c4a8b (cdmlib): ref #9311 adapt TermRepresentationUpdater for idInVoc updating
- 06:07 PM Revision 8b5c5b10 (cdmlib): ref #9272 add 5 new nomenclatural status types
- 06:06 PM Revision 9f381a15 (cdmlib): ref #6591 Use TaxonName.nomSource.NameUsedInSource for original spelling
- 06:06 PM Revision f9404583 (cdmlib): ref #9282 adapt NomenclaturalStatusType.csv to nomenclaturalStanding
- 06:06 PM Revision bc07028c (cdmlib): ref #9282 some final fixes and javadoc updates for NomenclaturalStatusType and nomenclaturalStanding
- 06:06 PM Revision d99f9c25 (cdmlib): ref #9282 adapt some nomenclatural standings in test dataset and fix/cleanup update script
- 06:06 PM Revision 13e8b7f4 (cdmlib): ref #9311 update labels in test terms
- 06:06 PM Revision a3a00b7a (cdmlib): ref #9282 add NomenclaturalStanding and INomenclaturalStanding and related method in TaxonName, NomenclaturalStatusType and NameRelationshipType
- 06:06 PM Revision 54aff43a (cdmlib): ref #9311 update script for nom status and name rel term label updates
- 06:06 PM Revision 62ea9850 (cdmlib): cleanup
- 05:08 PM feature request #9224 (Closed): openlayers map handles server error per layer and presents a user message
- fully solved
- 05:01 PM task #6591 (Resolved): Use name used in source for original spelling
- 04:48 PM bug #9313 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor
- please review once #9312 is also solved - needs prior communication with the dev team to check that the data base is ...
- 01:58 PM bug #9313 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor
- beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s...
- 04:46 PM Revision 004972d5 (cdm-vaadin): ref #9313 further init strategy extension to adapt to new OriginalSources ref #6581
- 04:45 PM feature request #9272 (Resolved): Add missing nomenclatural status
- Finally we added
protected
in sched.
pro syn.
orth. var. (as status)
comb. ined. - 03:01 PM bug #9311 (In Progress): Update some (abbrev) labels for nomenclatural status types
- 12:40 PM bug #9311 (Closed): Update some (abbrev) labels for nomenclatural status types
- opus. utique oppr. => op. utique oppr.
nom. orth. cons. => orth. cons.
nom. orth. cons. prop. => orth. cons. prop.
... - 01:05 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
- 09:34 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
- Gomphonemopsis ligowskii is published and has a holotype.
I inserted a unpublished test reference Kusber in Zeitschr... - 09:17 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
- Checked this example. The issue is perfectly solved. Before we close the ticket, I want to find an example with mixed...
- 11:51 AM Revision dea3754f (taxeditor): ref #9307: add preference page for termtrees and adapt label provider
- 11:51 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
- please review
- 11:06 AM Revision aa2fb1b5 (cdmlib): correct handling of doubtful synonyms
- 11:02 AM Revision 68bfcb66 (cdmlib): avoid NPE in Typedesignation Manager for sources without reference
- 10:54 AM Revision 43e9fd92 (taxeditor): move condensedDistribution preference to distribution preferences
- 08:40 AM bug #9310 (New): Deleting a taxon with all synonyms fails for the basionym
- The synonym set as basionym is not deleted because the check for basionym prevents the delete. There should be anothe...
- 08:32 AM feature request #7797: Second nomenclatural reference
- AM:
... Eine Idee wäre, den Text dieser zweiten Referenzen statt in die NameFacts in die neue Nomenclatural Sourc...
11/19/2020
- 07:29 PM Revision c23a56d8 (cdm-dataportal): harmonizing loading indicator color with other openlayers controls
- 07:05 PM Revision fc4f8c8d (cdm-dataportal): ref #9224 reporting WMS tile loading errors per layer in the message console
- 05:14 PM bug #9184 (Closed): WSOD in advanced search cdm_dataportal/search
- After re-indexing the problem does no longer occur.
discrepancies of the search index with the database could be m... - 01:38 PM bug #9184: WSOD in advanced search cdm_dataportal/search
- This problems seems to be caused by search indices which are not in sync with the cdm db.
The data portal now igno... - 05:06 PM Revision 78fb1106 (cdm-dataportal): fix for unavailable custom_placeholder_image
- 03:38 PM feature request #9309: Improve handling of specimen without titlecache in cdmLight
- The problem here is not primarily a cdmlight issue but an issue of missing title cache strategy (formatter) for Deriv...
- 01:55 PM feature request #9309 (New): Improve handling of specimen without titlecache in cdmLight
- copied from #9262:
Ausgabe -title cache generation not implemented-. Das kommt, soweit ich sehe, nur bei specimens... - 03:09 PM Revision 72408704 (cdmlib): fix presence questionable handling in test terms
- 02:12 PM Revision dee298b3 (cdmlib): Update javadoc for CdmPreference related classes.
- 02:01 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- This is fixed for all sources listed above, for sec reference I create a new ticket or we create a new one when the s...
- 01:58 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- all issues are implemented except the specimen without titleCache, therefore a new ticket exist (#9309)
- 01:56 PM feature request #9262 (Resolved): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- 01:36 PM Revision 04b1e433 (cdm-dataportal): ref #9184 ignoring null entities in lucene search result and showing error to user
- 01:32 PM Revision cb6764ac (taxeditor): ref #9262: adapt cdmlight preference handling to renamed predicate
- 12:15 PM task #9266: Remove protologue section from TaxEditor
- Andreas Müller wrote:
> The protologue section should also be removed from local and DB preferences I guess as it pr... - 12:11 PM feature request #9297 (Resolved): Improve name of zip file for cdmLightExport
- please review
- 12:10 PM feature request #9299 (Resolved): Add LSID to author and reference details
- please review
- 11:50 AM Revision a33cb038 (cdmlib): PreferencePredicate condensedDistributionRecipe not only for cdmLight
- 11:47 AM Revision 3bf91ce5 (cdmlib): CondensedDistributionRecipe enum is IKeyLabel
- 10:51 AM Revision 36ac0d5d (taxeditor): add lsid field to person details
- 10:39 AM Revision c875d034 (taxeditor): add lsid field to reference details
- 10:34 AM Revision 99197d76 (taxeditor): ref #9297: improve zip file name - continue
- 10:33 AM Revision 8fd0ede6 (taxeditor): ref #8774: remember expansion state when removing feature from feature tree
- 10:26 AM Revision fb43bf21 (taxeditor): ref #9297: improve zip file name
- 10:12 AM Revision 8d36f034 (cdmlib): revert disabling condensed distr. string and add missing presence absence term
- 09:04 AM Revision 9a899f86 (cdmlib): disable condensed distribution string in cdmlight export test
11/18/2020
- 04:50 PM Revision 5d62d265 (cdmlib): ref #9262: minor
- 03:59 PM Revision 36fa3d85 (taxeditor): ref #9297: add preferences and some code cleaning
- 03:58 PM Revision c842935a (cdmlib): ref #9262: add possibility to export condensed distribution string - new preference predicate
- 03:56 PM Revision ddbbb621 (cdm-vaadin): ref #9308 slight improvement for type status in bold letters
- 03:54 PM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Even if the plural "s" problem is fixed, there are also other problems with showing the type status in bold letters...- 03:51 PM Revision 44bef338 (cdmlib): ref #9262: add possibility to export condensed distribution string
- 02:03 PM Revision 40eb3245 (cdmlib-apps): remove methods not in use in CubaExcelImport
- 02:02 PM Revision 46ade909 (cdmlib-apps): replace links to trac tickets by links to redmine tickets in javadoc
- 02:02 PM Revision 8275a22c (cdmlib-apps): cleanup
- 11:49 AM Revision da219650 (cdm-vaadin): ref #9290 comment on typdesignation citation problem
- 10:25 AM Revision 101d7930 (cdm-vaadin): cleanup
- 10:01 AM Revision 43dd85e9 (cdmlib): cleanup
- 10:01 AM Revision 138715e0 (cdmlib): replace links to trac tickets by links to redmine tickets in javadoc
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