Activity
From 11/04/2020 to 12/03/2020
12/03/2020
- 09:34 PM Revision 113e67ef (taxeditor): Merge branch 'release/5.18.0' into develop
- 09:34 PM Revision 5155769b (taxeditor): Merge branch 'release/5.18.0'
- 08:54 PM Revision c654b140 (cdm-server): Merge branch 'release/5.18.0' into develop
- 08:54 PM Revision 51596a1b (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 08:53 PM Revision f0a436fd (cdm-server): updating poms for branch'release/5.18.0' with non-snapshot versions
- 08:52 PM Revision 345bcff8 (cdm-webapp): Merge branch 'release/5.18.0' into develop
- 08:52 PM Revision d9a3e77e (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 08:51 PM Revision a08a9f9c (cdm-webapp): updating poms for branch'release/5.18.0' with non-snapshot versions
- 08:51 PM Revision 8eb6f658 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.18.0
- 08:47 PM Revision c7e0b908 (cdm-dataportal): Merge branch 'release/5.18.0' into develop
- 08:47 PM Revision 6b7f29c7 (cdm-dataportal): updating poms for branch'release/5.18.0' with non-snapshot versions
- 08:47 PM Revision d2962586 (cdm-dataportal): release-preparation: production level css
- 08:47 PM Revision 9ed2ff7f (cdm-vaadin): Merge branch 'release/5.18.0' into develop
- 08:47 PM Revision 9251885f (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 08:43 PM Revision 90094ee9 (cdm-vaadin): updating poms for branch'release/5.18.0' with non-snapshot versions
- 08:43 PM Revision 99fbbfaf (cdm-vaadin): jenkins bumping cdmlib.version to 5.18.0
- 08:28 PM bug #8774 (Closed): Reimplement term tree editors to implement the general save strategy
- I think we can close this ticket. All remaining issues will go into the follow up ticket #9337
- 02:00 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- I move the expand of the tree after saving to the follow up ticket.
- 12:35 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- The saving of the termtree editor before adding a new term is not necessary anymore, only moving a new term is not po...
- 11:26 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- D&D on itself makes a node disappear and saving it creates a stackOverflow
- 11:23 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- The tree should stay expanded when saving
- 08:26 PM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Character Editor
- I tested again. It seems to work if the editing of the structure tree is done in the same TaxEditor instance or if th...
- 08:00 PM bug #9343 (Duplicate): Open issues for DTO based term tree & character editor
- upps, this is a duplicate of course for #9337. I moved all issues there
- 07:28 PM bug #9343 (Duplicate): Open issues for DTO based term tree & character editor
- copied from #8774
* tree collapses sometimes after save
* d&d from vocabulary editor to character editor not yet ... - 07:33 PM Revision af199beb (cdmlib): Updating develop poms back to pre merge state
- 07:33 PM Revision 638beb74 (cdmlib): Merge branch 'master' into develop
- 07:33 PM Revision 8c4580af (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 07:33 PM Revision 27b8c645 (cdmlib): Merge branch 'release/5.18.0'
- 07:11 PM Revision 5bdde967 (cdmlib): updating poms for branch'release/5.18.0' with non-snapshot versions
- 06:48 PM Revision f3722b4a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.18.0-SNAPSHOT
- 06:47 PM Revision 6d43461a (cdm-webapp): updating poms for 5.19.0-SNAPSHOT development
- 06:47 PM Revision 66dbc081 (cdm-webapp): updating poms for 5.18.0 branch with snapshot versions
- 06:47 PM Revision 0e2580eb (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.19.0-SNAPSHOT
- 06:30 PM bug #9267 (Closed): No sec reference for move change Synonym to accepted Taxon
- First version was implemented now.
I think we can close this ticket. All the rest will be done in the follow up ti... - 03:32 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
- Now there is only a statement saying "The new taxon and the parent does not have the same secundum reference". But yo...
- 01:55 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
- A "hot fix" version is implemented now. The new accepted taxon keeps the secundum reference of the former synonym and...
- 06:24 PM Revision 0b1617f5 (taxeditor): Updated version in pom / project files to taxeditor version : 5.19.0-SNAPSHOT and cdmlib version : 5.19.0-SNAPSHOT
- 06:24 PM Revision f28ad9fa (taxeditor): Updated version in pom / project files to taxeditor version : 5.18.0 and cdmlib version : 5.18.0
- 06:23 PM Revision 6b274bd6 (cdm-server): updating poms for 5.19.0-SNAPSHOT development
- 06:23 PM Revision 599dde48 (cdm-vaadin): jenkins bumping cdmlib.version to 5.18.0-SNAPSHOT
- 06:23 PM Revision 7e0d9ffd (cdm-dataportal): updating poms for 5.19.0-SNAPSHOT development
- 06:23 PM Revision 1ae1237f (cdm-vaadin): updating poms for 5.19.0-SNAPSHOT development
- 06:23 PM Revision 2e76afe1 (cdm-vaadin): updating poms for 5.18.0 branch with snapshot versions
- 06:23 PM Revision c0d8b571 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0-SNAPSHOT
- 06:20 PM Revision 3a956fb6 (cdmlib): updating poms for 5.19.0-SNAPSHOT development
- 06:20 PM Revision 2f1c9deb (cdmlib): updating poms for 5.18.0 branch with snapshot versions
- 06:14 PM feature request #8529: [DISCUSS]Display of aggregated descriptions
- Norbert, can you have a look on this ticket if you remember what was meant?
- 06:09 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- Katja, do you remember why this ticket was assigned to me? Simply a mistake?
Can we reproduce this behavior? - 05:52 PM bug #8547 (Closed): Default type of a newly created inReference should depend on the type of the reference
- This is fixed as far as now by default the most likely reference type is now prefilled for inreferences.
There is ... - 02:28 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- ReferenceType.inReferenceContraints() is a list now, so the first element in the list is the default preferred type. ...
- 05:48 PM feature request #9342 (New): Only show specific reference types for inreferences
- copied from #8547
RefereceType.inReferenceContraints() returns the possible values available for an inreference. T... - 05:45 PM Revision 76ee473f (cdmlib): ref #8547 add inreference type for Proceedings
- 05:45 PM Revision 9f5a2d3a (cdmlib): throw exception when datasource could not be saved (instead of logging only)
- 05:44 PM Revision c58fbd18 (cdmlib): cleanup
- 05:39 PM bug #9199 (Closed): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Works as expected. We can close this ticket.
- 03:31 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > ~~Another minor issue: could we move... - 03:13 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- 03:09 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Andreas Müller wrote:
> Andreas Müller wrote:
> > ~~Another minor issue: could we move "Original Information" above... - 01:56 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- this should be solved with last commit.
- 05:25 PM Revision 8bdc7bb8 (taxeditor): ref #9267: warning message instead of confirm message box
- 05:21 PM task #9189 (Closed): Move datasource view to taxeditor.local
- This works now but there are still open issues to solve before all cdmlib-db stuff can fully migrate to taxeditor.loc...
- 05:20 PM feature request #9341 (New): Move local datasource access fully to taxeditor.local
- The datasource view has been migrated to taxeditor.local in #9189.
However, there is still a dependency to cdmlib-... - 05:19 PM Revision 49f27511 (taxeditor): ref #8774: only one message when trying to move new node
- 04:59 PM Revision 9f3ac470 (taxeditor): some doc
- 04:55 PM Revision 25082155 (taxeditor): ref 9189 add mchange-commons-java to MANIFEST
- 04:42 PM Revision d9f875da (taxeditor): minor
- 04:36 PM Revision 2fdfb0a3 (taxeditor): cleanup
- 04:36 PM Revision 88090686 (taxeditor): some gitignores
- 04:34 PM Revision 4228a4ef (taxeditor): ref 9189 add mchange-commons-java to dependency copy
- 03:36 PM feature request #9340 (Closed): Workflow support for secundum handling when making synonym a new accepted taxon
- copied from #9267
(1) check above ticket for remaining issues. Most important is to have a preference to handle th... - 03:26 PM Revision 5eabd2c1 (taxeditor): ref #9199: move original information behind name used in source
- 02:25 PM Revision 46418777 (cdm-vaadin): ref #8547 make ReferenceType.inReferenceContraints() a list (adapt vaadin)
- 02:23 PM Revision 2c0bb8e3 (cdmlib): ref #8547 make ReferenceType.inReferenceContraints() a list
- 01:55 PM task #6714: Create 001-cdm.h2.sql automatically
- This is more or less done in 5.18 except for the copying issue
- 01:35 PM Revision 91febabd (taxeditor): ref #8774: code cleaning
- 01:35 PM Revision e33f888a (taxeditor): ref #8774: label issues in character editor
- 01:09 PM Revision 427ed9f2 (taxeditor): ref #8774: label issues in character editor
- 12:26 PM Revision 81222649 (taxeditor): ref #8774: save is not necessary for creating new terms
- 12:01 PM Revision 4a70bee8 (cdm-dataportal): ref #8851 adapting test assertions to modified test data
- 10:53 AM Revision b15678f9 (taxeditor): ref #8774: change text for duplicates
- 10:40 AM Revision 4756075a (taxeditor): ref #8774: avoid d&d to child of the dropped node
12/02/2020
- 10:37 PM Revision 68aa76e0 (cdm-dataportal): ref #9322 changing test case for invalid designation to misapplied name
- 07:53 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- The above also happens when D&D a NamedAreae from NamedArea Term Editor to NamedArea Term Tree Editor, so it is proba...
- 07:51 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- D&D a NamedArea term from a NamedArea Tree Term Editor to an Rank Tree Term Editor leeds to the below NPE:
D&D wit... - 07:47 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- D&d a term onto its own child makes both disappear in the UI. Saving this is one way to create the above StackOverflo...
- 07:38 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- after moving some ranks around in the term editor I got the following when trying to save:
~~~
last remote method... - 01:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- The text for duplicate recognition should be improved from
This term tree does not allow duplicates and there exi... - 01:00 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- When changing a tree by e.g. changing a flag (order relevant) and then adding a term a message comes that the tree ne...
- 12:20 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- ... this happens whereever I try to move the 3rd rank from position of being child of 2nd rank (but in the same sessi...
- 12:17 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
- AOOB with a rank tree with 3 top level children, first I moved 3rd rank to be child of 2nd rank, than I tried to move...
- 11:47 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- I think all remaining issues are solved or moved to new tickets.
- 07:00 PM bug #9322 (Closed): Remove invalid designation taxon relationship
- 06:50 PM feature request #9282 (Closed): Add nomenclatural standing
- 06:28 PM Revision 387aef2a (taxeditor): ref #9199: layout issues and code cleaning
- 06:22 PM Revision 0eb2578c (cdmlib): ref #6591 handle also AUD table in SingleTermRemover for removing original spelling
- 06:21 PM Revision dcf6678d (cdmlib): cleanup
- 06:20 PM Revision e2d8dde3 (cdmlib): ref #9322 handle also AUD table in SingleTermRemover and connect the schema updater
- 05:19 PM Revision 1fa1f3de (cdmlib): cleanup
- 05:13 PM bug #9257: revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > Hi Katja & AM, the current implementation partially filters for... - 04:45 PM Revision 1c2b2e59 (cdmlib): move country methods to term service and some cleanup
- 04:31 PM feature request #9190 (In Progress): Make taxeditor.local a loadable plugin not installed by default
- 04:30 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- ... looks like the error appears at different places depending on the type field that you enter data in
- 04:28 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Also the NPE still exists, but with a different row number:
~~~
last remote method : http://test.e-taxonomy.eu:80... - 04:25 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Andreas Müller wrote:
> ~~Another minor issue: could we move "Original Information" above ID Namespace and ID in Sou... - 04:23 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Andreas Müller wrote:
> Sometimes the nomenclatural source still shows "No external link" yet instead of no protolog... - 11:45 AM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- please review.
- 11:42 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Andreas Müller wrote:
> NPE when editing a lectotype source
>
> ~~~
> last remote method : http://test.e-taxonom... - 04:15 PM Revision 7b2afc79 (cdmlib-apps): uncomment schema location in app-import pom (not sure why it was commented)
- 04:14 PM Revision a1c98b63 (cdmlib-apps): ref #9228 add CentaureaCloneActivator
- 04:12 PM Revision 11e38aae (cdmlib): ref #9228 , ref #4866 some fixes for subtree cloning
- 04:12 PM Revision 5d03f828 (cdmlib): cleanup
- 03:03 PM Revision 3385926d (cdmlib): ref #9267: set sec of new taxon to sec of synonym
- 03:01 PM Revision bb2b5493 (taxeditor): ref #9267: add message if sec of new taxon differs from sec of new parent
- 02:46 PM Revision e796e4aa (taxeditor): ref #9189: move new menu item to the top
- 02:42 PM task #9189: Move datasource view to taxeditor.local
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > The "New"... - 02:27 PM Revision 3b11ede7 (taxeditor): avoid widget is disposed exception
- 02:06 PM Revision 21015b47 (taxeditor): ref #8774: fix AOOB Exception in termtree editor
- 02:05 PM bug #6356 (Closed): taxontree sort order as in editor
- Norbert wrote: "alles klar, gelöst!"
- 01:54 PM feature request #8308 (Worksforme): Extend specimen type designation editor
- 01:45 PM feature request #8308: Extend specimen type designation editor
- This ticket can be set to "worksforme".
The image issue raised is not what the screenshot here shows. I will comment... - 01:27 PM bug #9313 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor
- 01:04 PM bug #9313: LazyInitializationException (LIE) in TaxonNamePopupEditor
- no problems with existing names (orthogr. variant, corrected name, species name, genus name) anymore. Ticket can be c...
- 12:54 PM Revision 0b429510 (cdm-dataportal): ref #9322 removing taxon relationship invalid designation from portal code
- 12:30 PM bug #8776 (In Progress): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- 12:28 PM Revision ca0e1f12 (taxeditor): ref #4866, ref #9228 fix postgresql version number and add to gitignore
- 12:07 PM Revision 9306fdac (taxeditor): ref #4866, ref #9228 preliminary revert moving h2, postgresql and mysql from cdmlib to local and include mchange-commons-java in cdmlib
- 11:42 AM Revision d34bc6be (taxeditor): fix NPE in nameEditor
- 11:35 AM Revision bd5b538f (taxeditor): ref #9199: fix NPE for newly created designation source
- 11:35 AM Revision 0a20a617 (taxeditor): ref #9332: further clean up in editor
- 09:07 AM feature request #9339: Improve warning message if save is necessary
- We should do this soon
- 08:22 AM feature request #9339 (New): Improve warning message if save is necessary
- The actual warning message "The editor needs to be saved..." is misleading because normally only the active window is...
12/01/2020
- 08:45 PM Revision 77f6a14a (taxeditor): ref #4866, ref #9228 fix CloneClassificationOperation preliminary in TaxEditor
- 08:41 PM Revision 0b79f873 (taxeditor): ref #4866, ref #9228 fix CloneClassificationOperation preliminary in TaxEditor
- 08:36 PM Revision 77ad5e8c (taxeditor): ref #4866, ref #9228 fix CloneClassificationOperation preliminary in TaxEditor
- 08:06 PM Revision 9d1786e4 (cdmlib): ref #4866, ref #9228 try to fix further test in suite
- 08:01 PM Revision 8d24eb30 (cdmlib): cleanup
- 08:01 PM Revision 2b75e024 (cdmlib): ref #4866, ref #9228 try to fix NameServiceImplTest in suite
- 07:45 PM Revision 32aa5af0 (cdmlib): ref #4866, ref #9228 add references for test
- 07:28 PM Revision 8f658368 (cdmlib): ref #4866, ref #9228 fix test and use referenceDao instead of refService internally
- 07:19 PM Revision 67518a48 (cdmlib): ref #4866, ref #9228 implement subtree clone (cont., fix taxon cloning)
- 07:02 PM feature request #4866: Implement clone method for complete classifications
- this is a blocker for #9228
- 06:57 PM Revision 00f63413 (cdmlib): cleanup
- 06:33 PM Revision e04ce4b2 (cdmlib): ref #4866, ref #9228 implement subtree clone
- 04:43 PM task #9189: Move datasource view to taxeditor.local
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> and the classLoader is EquinoxClassLoader
... - 02:42 PM task #9189: Move datasource view to taxeditor.local
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The finish button does not seem to wor... - 02:31 PM task #9189: Move datasource view to taxeditor.local
- Katja Luther wrote:
> Andreas Müller wrote:
> > The finish button does not seem to work anymore (when using clone).... - 12:55 PM task #9189: Move datasource view to taxeditor.local
- Katja Luther wrote:
> Andreas Müller wrote:
> > The finish button does not seem to work anymore (when using clone).... - 12:00 PM task #9189: Move datasource view to taxeditor.local
- Andreas Müller wrote:
> The finish button does not seem to work anymore (when using clone).
This is caused by jav... - 11:50 AM task #9189: Move datasource view to taxeditor.local
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The "New" button is missing.
> >
> ... - 11:49 AM task #9189: Move datasource view to taxeditor.local
- Andreas Müller wrote:
> Entering a name (or other information) now is very fast. It was slow before because I think ... - 11:37 AM task #9189: Move datasource view to taxeditor.local
- Katja Luther wrote:
> Andreas Müller wrote:
> > The "New" button is missing.
>
> Shouldn't the new button should... - 11:26 AM task #9189: Move datasource view to taxeditor.local
- Entering a name (or other information) now is very fast. It was slow before because I think there was always done som...
- 11:20 AM task #9189: Move datasource view to taxeditor.local
- Andreas Müller wrote:
> The "New" button is missing.
Shouldn't the new button should be removed in #9119? - 11:17 AM task #9189: Move datasource view to taxeditor.local
- The finish button does not seem to work anymore (when using clone).
- 11:14 AM task #9189 (Feedback): Move datasource view to taxeditor.local
- The "New" button is missing.
- 11:12 AM task #9189: Move datasource view to taxeditor.local
- Title translations are missing:
 - 04:39 PM bug #8851: display of name facts not appropriate in all cases
- Walter, can you have a look after the next release, if this is now all correct?
- 02:16 PM bug #8851 (Closed): display of name facts not appropriate in all cases
- 04:12 PM task #9206 (Closed): Solve cglib vs. cglib-nodep
- the dependency to `hibernate-cglib-repack` was introduced by ben on Wed Feb 25 2009.
I don't see any further need f... - 04:11 PM Revision 60942e5d (taxeditor): ref #9204, ref #9154 remove jtds and mssql from git in taxeditor.local
- 04:10 PM Revision 70ed1e1f (taxeditor): ref #9204, ref #9154 add cdmlib-remote-webapp.war to gitignore (not yet there because of renaming webapp->local
- 03:55 PM task #9219: Revert: requests with %2F in URL are rejected by apache
- to be done right after the release 5.18 is deployed to our servers
- 03:50 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- updating description with latest TODOs
- 03:47 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- .. and another one:
TODO: The methods `OccurrenceServiceImpl._findFieldUnitDTO` and `OccurrenceServiceImpl.findFie... - 03:07 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- more TODO:
revise commented code and clean up - 03:46 PM Revision 99996219 (taxeditor): ref #9204 remove H2, postgresql and mysql fully from taxeditor.cdmlib
- 03:41 PM task #8458 (Closed): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- 03:41 PM task #8458 (Resolved): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- Applied in changeset commit:cdmlib|a20e6aec783ee2e911e75f315e0c9e0137c2e7e7.
- 03:41 PM Revision a20e6aec (cdmlib): fix #8458 documenting FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- 03:21 PM Revision 4e6b7379 (taxeditor): ref #9204 remove postgresql and mysql connector from taxeditor.cdmlib pom (cont.)
- 03:18 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Katja Luther wrote:
> Andreas Müller wrote:
> > Can we remove "Inapplicable IF" and "Only applicable if" for all te... - 01:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Can we remove "Inapplicable IF" and "Only applicable if" for all term trees except for those... - 12:34 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
- Can we remove "Inapplicable IF" and "Only applicable if" for all term trees except for those having term type "Featur...
- 11:59 AM bug #8774: Reimplement term tree editors to implement the general save strategy
But this should be done immediately:
Rename menu entry "Term Tree Editor" to "Term Trees" as it is inconsistent ...- 11:56 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- I moved the open menu items to #9338
- 08:44 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- I think all issues are fixed. Only the wrong position for a short time (#9337) and handling of flat trees still open ...
- 03:16 PM Revision 47d8963b (taxeditor): ref #9204 remove postgresql and mysql connector from taxeditor.cdmlib pom
- 03:14 PM task #8635 (Closed): install collectd + facette for server monitoring
- this is now fairly complete. the ticket is linked from the [[ServerAdministration]] wiki page, so it can be closed
- 02:54 PM task #8419 (In Progress): Harmonization of the different specimen representations
- work still in progress, moving ticket to next milestone
- 02:53 PM task #8379: Review strange specimen implementations
- TODO: final check
- 02:28 PM Revision 8a79d625 (taxeditor): ref #9204 add jtds and mssql-jdbc-8.4.1.jre8 to gitignore
- 02:26 PM Revision 73192ab3 (taxeditor): ref #9204 remove some cdmlib-dbs from git and upgrade postgresql version
- 02:18 PM task #9265 (Closed): Adapt dataportal to new protologue handling
- now that #8851 is solved the functionality which has been removed while working on this ticket is restored, so we c...
- 02:13 PM Revision d9fa5913 (cdmlib): ref #8851 extednding init strategy for name descriptions by sources and annotations
- 02:11 PM Revision c11fa375 (cdm-dataportal): ref #8851 sources and annotations to name descriptions with test
- 01:45 PM Revision 233ae205 (cdmlib): ref #9204 upgrade postgresql driver to latest version
- 01:39 PM Revision 860adb95 (taxeditor): rename termtree editors to term trees in menu
- 01:38 PM Revision a3a44561 (cdmlib): move mchange-commons-java version to parent pom
- 01:30 PM Revision 5c44e322 (taxeditor): ref #9189: harmonize l10n files
- 01:28 PM Revision 59174ab0 (cdmlib): ref #4866, ref #9228 implement subtree clone in branch
- 12:18 PM bug #8522: Make type status mandatory in Name type designation editor
- Note: A name type might be a status only that is not in the dropdown list, such as:
conserved type
rejected type
t... - 11:55 AM feature request #9338: Restructure term menus
- I put milestone to 5.19 as it belongs to #8774 content wise.
- 11:55 AM feature request #9338 (Closed): Restructure term menus
- We now have the vocabulary menu and the term tree menu. Both look very different but should look similar.
To me it... - 11:30 AM feature request #9326: Show all authors in bibliographic references
- this is rather a question of how the cache strategy. Therefore I am changing category and assignee accordingly
- 10:57 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- ~~Another minor issue: could we move "Original Information" above ID Namespace and ID in Source. It is probably more ...
- 10:56 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- NPE when editing a lectotype source
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/r... - 10:52 AM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- The space between URI and type (in external links could be a bit smaller and therefore a bit more space between type ...
- 10:51 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Sometimes the nomenclatural source still shows "No external link" yet instead of no protologue yet.
: ref #8851 adapting side-effected NameRelationshipsTest
- 05:33 PM Revision f06c22c7 (cdm-dataportal): ref #8851 adding missing space
- 05:23 PM Revision 79bd5456 (cdm-dataportal): ref #8851 adapting test for name desciptions
- 05:14 PM Revision e024a603 (cdm-dataportal): ref #8851, ref #9265 improved re-implementation of name desciptions (annotations and sources still pending)
- 04:54 PM bug #8851: display of name facts not appropriate in all cases
- to query for relevant data:
~~~sql
SELECT db.DTYPE, db.id, feature.titleCache, deb.DTYPE, osb.id, osb.citation_id... - 03:51 PM feature request #9337 (Closed): Open issues for reimplementation of termtree editors
- copied from #8774
1. ~~Show supplemental data (IMPORTANT)~~(actually only for nodes)
2. For a very short time ... - 03:42 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> When adding/removing terms the tree should stay expanded. Currently it collapses and you hav... - 02:42 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> There is still camle case in the label
>
> 
this is fixed - 10:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > The duplicate check should be done w... - 03:40 PM Revision 0e21282a (cdmlib): ref #8774: save term tree titleCache
- 03:25 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
- now I found the missing bit.
In commit:cdm-dataportal|f9b5740e33ff94ab9e1703774379f5d67d103649 the apparently imc... - 01:08 PM task #9265 (Closed): Adapt dataportal to new protologue handling
- cant see that there is still something missing and thus closing this ticket
- 02:55 PM bug #9103 (Closed): missing exception handling in TaxoNodeDto
- the last commit fixes the potential NPE that was in the code after the previous commit. The code looks ok now and the...
- 01:06 PM bug #9103: missing exception handling in TaxoNodeDto
- Andreas Kohlbecker wrote:
> Katja Luther wrote:
> > the null check for the classification is missing, the rest seem... - 12:13 PM bug #9103: missing exception handling in TaxoNodeDto
- Katja Luther wrote:
> the null check for the classification is missing, the rest seems to be correct.
Good point,... - 11:56 AM bug #9103 (Feedback): missing exception handling in TaxoNodeDto
- the null check for the classification is missing, the rest seems to be correct.
- 02:47 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- Katja Luther wrote:
> The type of the in-reference depends on ReferenceType.inReferenceContraints, we should add the... - 02:33 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- Andreas Müller wrote:
> I got the following NPE when playing around with the dialog:
>
> ~~~
>
This should b... - 02:16 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- The type of the in-reference depends on ReferenceType.inReferenceContraints, we should add the constraints mentioned ...
- 02:30 PM bug #6623 (Closed): formatter for bibliografic citations with citationDetail
- I am pretty sure that this was a requirement for the TypeDesignationManager which was composing References + referen...
- 02:29 PM Revision b5fdbda7 (taxeditor): avoid NPE
- 02:04 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- the issue has been fixed in #9318, so we can close this ticket again.
- 01:45 PM feature request #9336 (New): Serverside preference for last used references
- ERS:
eine weitere Auffälligkeit:
bei der Auswahl von Referenzen für Faktendaten (in meinem Fall für Verbreitung... - 01:39 PM Revision da9e29c4 (cdmlib): ref #9103: add handling of classifications in TaxonnodeDto - continue
- 01:24 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- there are two open FIXMEs in the method:
~~~
// FIXME defining propertyPaths inside of transactional service meth... - 01:17 PM Revision 6706afc3 (cdmlib): ref #9103: add handling of classifications in TaxonnodeDto
- 01:12 PM bug #9220 (Closed): adapt dataportal to /registrationDTO now using identifier as query parameter and secure against CVE-2007-0450 vulnerability
- 01:11 PM bug #9218 (Closed): Change /registrationDTO/identifier/... signatures to use query parameters instead
- can be closed now that remaining tasks are copied to #9275
- 01:09 PM bug #9318 (Closed): TaxonNameEditor: nomenclatural reference no longer selectable
- 01:06 PM task #9222 (Closed): Adapt dataportal to switch to originalSource for remaining single sourced classes
- 12:49 PM Revision 87caa5aa (taxeditor): ref #8774: adapt to termNodeDto changes
- 12:37 PM feature request #4754: Implement webservice to get the date of the last change or to check if there are any changes since a certain date
- BTW: this is the relevant method in the AbstractOaiPmhController: `eu.etaxonomy.cdm.remote.controller.oaipmh.Abstract...
- 12:09 PM Revision 94959be3 (cdmlib): ref #9103 adding missing null check
- 12:06 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- Andreas Müller wrote:
> so can we close the ticket?
yes. - 12:06 PM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
- 12:02 PM task #9189: Move datasource view to taxeditor.local
- yes, please check whether everything still works.
- 12:00 PM Revision e1397e51 (cdmlib): cleanup
- 11:59 AM bug #8174: First test fails if term data is in loaded DataSet
- Andreas Kohlbecker wrote:
> I think we should go for option 3) that is to remove TestingTermInitializer and to rely ... - 11:48 AM Revision 79221c91 (cdm-dataportal): ref #9279 adapting test to modified output of the TypeDesignationSetManager
- 11:33 AM Revision 758cf8ed (cdmlib): Adapt javadoc for TypeDesignationBase
- 11:00 AM Revision 7c5f89b4 (cdmlib): ref #8774: avoid NPE in termNodeDto
- 10:58 AM task #9228 (In Progress): Adaptations to allow editing Centaurea in Flora of Greece
- 09:41 AM feature request #9192: Layout issues for source in taxonnode details
- I think the only thing still open, is the gap on top of the expandable element. I move this to 5.19 because it is not...
- 09:37 AM Revision 69bed327 (taxeditor): fix #9199: layout issues in nomenclatural source details and external links
- 09:37 AM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Applied in changeset commit:taxeditor|69bed327b7a5028e5f904ffe9ac8cca1d01a20e9.
- 09:26 AM bug #9257: revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- Andreas Kohlbecker wrote:
> Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type... - 09:18 AM feature request #9299 (Closed): Add LSID to author and reference details
- the issues mentioned above are solved, so I close this ticket
11/27/2020
- 07:22 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel()
- This has been fixed. As all code compiles now I think review is not necessary. Please review if you think it is needed.
- 07:20 PM Revision e522c53f (taxeditor): remove unwanted commit
- 07:20 PM Revision cc7051ed (taxeditor): ref #9280 adapt TaxEditor to new Term.getLabel() (cont. 2)
- 07:16 PM Revision 2a7ad236 (taxeditor): ref #9280 adapt TaxEditor to new Term.getLabel() (cont.)
- 07:08 PM Revision 137d0ad0 (taxeditor): ref #9280 adapt TaxEditor to new Term.getLabel()
- 07:08 PM Revision 4e6a6782 (taxeditor): cleanup
- 06:33 PM bug #9322 (Resolved): Remove invalid designation taxon relationship
- This is generally fixed. Only in integration_reference there is still 1 record left (mail sent to AK).
After relea... - 06:28 PM Revision 340adc01 (cdmlib-apps): ref #9280 adapt appimport to new Term.getLabel()
- 06:27 PM Revision 82fc7e6e (cdmlib-apps): ref #9322 adapt BerlinModelOccurrenceSourceImport to removed Invalid Designation
- 06:24 PM Revision 18620ac6 (cdmlib): ref #9280 rename IKeyTerm.getMessage() => .getLabel()
- 05:47 PM Revision 0d1aca12 (cdmlib): cleanup
- 05:33 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- Andreas Müller wrote:
> For "Section" the type is "InProceedings" now which is generally false. We should use "Gener... - 05:26 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- I got the following NPE when playing around with the dialog:
~~~
last remote method : http://test.e-taxonomy.eu... - 05:25 PM bug #8547 (Feedback): Default type of a newly created inReference should depend on the type of the reference
- For "Section" the type is "InProceedings" now which is generally false. We should use "General" as before or even bet...
- 04:24 PM feature request #5795 (Closed): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
- It has been added now. So I close the ticket.
- 04:23 PM feature request #6589 (Closed): Handle protologue as original source with URI link
- I think we can close this ticket.
- 04:21 PM bug #8326 (Closed): update labels for is blocking name and is isonym
- 04:18 PM bug #9335 (Closed): termTree webservice response misses titleCache
- 03:40 PM bug #9335 (In Progress): termTree webservice response misses titleCache
- 02:31 PM bug #9335 (Feedback): termTree webservice response misses titleCache
- There were no changes/commits for long time on the above tickets. So I don't think it is related.
Maybe related to... - 02:20 PM bug #9335 (Closed): termTree webservice response misses titleCache
1. termTree webservice response misses the titleCache field
1. ~~there is evidence for that the order of the terms...- 04:14 PM bug #9124 (Closed): Altitude feature should have [m] as measurement unit by default
- 04:14 PM bug #9124: Altitude feature should have [m] as measurement unit by default
- I expect this to work so I close the ticket.
- 03:53 PM bug #9124: Altitude feature should have [m] as measurement unit by default
- I tested on test and integration. The result looks fine. But we should also run on production once after the release ...
- 04:13 PM task #9062 (Closed): Remove StatisticalMeasurementValue.value_old
- Is fixed.
- 04:11 PM task #9082 (Closed): Update script for old empty Partials handling
- 04:07 PM Revision 2347bf25 (cdmlib): ref #9335 creating fallback representation for Terms in TermBaseBeanProcessor - bug fix
- 04:06 PM task #9094 (Closed): Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource
- This is fixed
- 04:00 PM task #9120: Update script for flowering period supports temporal data
- ~~~sql
SELECT *
FROM DefinedTermBase dtb
WHERE dtb.supportedDataTypes LIKE '%#TED#%'
~~~ - 03:59 PM task #9120 (Closed): Update script for flowering period supports temporal data
- This is fixed on test and integration databases.
- 03:55 PM feature request #9121 (Closed): Add abbreviations to Feature
- I think we can close this ticket. Looks like it works. We could test on production, but as it not really critical, th...
- 03:50 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
- By the way, as the above action is a taxon split, in future there will be the need of more user interaction during th...
- 03:42 PM bug #9267 (Feedback): No sec reference for move change Synonym to accepted Taxon
- The above requirement works as expected but I do not fully agree to the requirement. I think we discussed this some t...
- 03:49 PM Revision d8001ede (cdm-dataportal): ref #9335 using term representation instead of titleCache
- 03:48 PM Revision f86bb6df (cdm-dataportal): removing before protologue icon to conform to test assertions§
- 03:45 PM Revision f9a4a64f (cdmlib): ref #9335 creating fallback representation for Terms in TermBaseBeanProcessor - 2
- 03:43 PM Revision 82885917 (cdmlib): ref #9335 creating fallback representation for Terms in TermBaseBeanProcessor
- 02:01 PM feature request #9282: Add nomenclatural standing
- This generally works and can be closed. A final update script still needs to run to change handling of nom. confus. a...
- 01:57 PM feature request #4644 (New): json lib incorrectly serializes values containig the characters [, ], {, }
- the above mentioned commit had to be reverted, so this issue is open again
- 01:29 PM Revision a75434dd (cdm-vaadin): aqdapting to RegistrationDTO typifiedName as non-property
- 12:52 PM Revision f2198885 (cdmlib): ref #9265 removing NomenclaturalSourceBeanProcessor since it causes many hard to controll LazyInitializationExcptions in web services
- 12:51 PM task #6591 (Closed): Use name used in source for original spelling
- I think this works and can be closed.
- 12:49 PM Revision 0188f3d8 (cdmlib): typo
- 12:45 PM Revision 9c96ba36 (cdm-dataportal): ref #9265 reverting to old nomRef retrival strategy and fixing bugs
- 12:45 PM bug #8776 (New): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Now the duplicates are checked on editor side and the message dialog shows which terms can not be added because they ...
- 11:38 AM bug #8776 (In Progress): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Looks like this is partly fixed already (at least first part of first issue). As it is related to #8774 we should try...
- 12:44 PM Revision a3e8d11d (taxeditor): ref #8774: show which terms are duplicates in dialog
- 12:36 PM task #5856 (Rejected): [DISCUSS] Consider implemeting additional name relationships
- So I mixed it up. This is on implementation in **dataportal**.
However, I think if name relationships are all show... - 12:21 PM task #3967 (Duplicate): Rethink original spelling strategy
- This is a duplicate for #6591
- 12:06 PM feature request #9194 (Closed): Make RelationshipBase and NomenclaturalStatus reference OriginalSource
- This is fixed. I checked the update script result against some test databases. Looks ok (for hybrid relations I did n...
- 11:58 AM Revision 8bc96896 (cdm-dataportal): Revert "ref #9265 getting citationDetail from NomenclaturalSource"
- This reverts commit d5de0b1f6ed6901d71ccdb8a5a9b44805f907bf0.
- 11:49 AM Revision c9d0cb80 (taxeditor): ref #8774: update of termtree editor after creating/removing tree
- 11:35 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Andreas Müller wrote:
> > The duplicate check should be done when adding the term not only ... - 11:22 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Andreas Müller wrote:
> > It is now possible to open 2 term tree Editors of the same type. ... - 11:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Can we still Change the menu that way that we have Vocabularies i... - 11:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Similar to the duplicates issue a term tree can be "flat". In this case adding a child to a ... - 09:23 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Similar to the duplicates issue a term tree can be "flat". In this case adding a child to a term node should not be a...
- 09:20 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> The duplicate check should be done when adding the term not only when saving it.
>
> this... - 09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- There is still camle case in the label
 - 08:52 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named... - 08:51 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an... - 08:47 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> It is now possible to open 2 term tree Editors of the same type. This is not wanted as a ter... - 08:38 AM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
- When moving a term up in feature tree via d&d
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem... - 11:20 AM Revision 695b1de9 (taxeditor): remove camel case
- 11:12 AM feature request #9307 (Closed): Preferences for display of termtrees and entries
- 09:11 AM feature request #9307: Preferences for display of termtrees and entries
- I guess this is for final review again.
- 08:45 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
- Applied in changeset commit:taxeditor|9d517193984ee588d4ee88484ddc791710ce613c.
- 08:41 AM feature request #9307: Preferences for display of termtrees and entries
- The functionality itself works. So, when the label is fixed, the ticket can be closed.
- 08:32 AM feature request #9307 (Feedback): Preferences for display of termtrees and entries
- The label still does not work
 - 11:07 AM Revision 14417ce8 (taxeditor): ref #8774: move all term editor menu items to vocabularies
- 10:55 AM Revision 0307d72a (taxeditor): ref #8774: open termTree editors only once
- 10:52 AM Revision 6b891987 (cdmlib): code cleaning and improving documentation
- 10:51 AM Revision 2315a55d (cdmlib): RegistrationDTO: typifiedName as non-property
- 10:21 AM Revision 06fba5d3 (cdm-dataportal): typo
- 09:09 AM feature request #9287: Show term details in details view of term tree editor
- Maybe we do not need to load the data with the initial DTO but asynchronously when ever it is needed. Just in case lo...
- 08:55 AM feature request #9287: Show term details in details view of term tree editor
- As this is related to #8774 I move it to current milestone as we should implement it soon (might also be an interesti...
- 08:45 AM Revision 9d517193 (taxeditor): fix #9307: add missing translation#
- 08:20 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Another layout issue somehow related: In external link, can we move the URI to the top and the type below URI? URI is...
- 08:17 AM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- But it should be adapted for all single sources like for TaxonNode.source. So indentation is needed everywhere, excep...
- 08:14 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Yes, this looks much better. Only for nom. sources "more" is still bold. Can you adapt it there, too?
11/26/2020
- 04:02 PM Revision 9c6a5661 (taxeditor): smaller layout issue in specimenSelectionDialog for character matrix
- 03:46 PM Revision 52d904ba (taxeditor): remove protologue detail files
- 03:45 PM Revision e5df12cf (taxeditor): remove merge comment
- 02:58 PM Revision 96a59002 (taxeditor): merge issues
- 02:54 PM Revision b1a6925c (taxeditor): ref #9299: layout issues
- 02:54 PM Revision aab656a8 (taxeditor): layout issues for single source elements
- 02:27 PM bug #9334 (New): Show error message when feature tree can not be shown because of dirty data
- see #8774#note-32
- 02:22 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- For the missing feedback I create a new ticket, can we close this ticket?
- 02:21 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- I think this is fixed now. Please review.
- 01:05 PM Revision aae9aefe (cdm-dataportal): spanish translation Type->Tipo
- 12:54 PM task #9266 (Closed): Remove protologue section from TaxEditor
- 09:32 AM task #9266 (Resolved): Remove protologue section from TaxEditor
- 09:31 AM task #9266: Remove protologue section from TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > >
> > > Maybe we could even use the above preference to show or n... - 11:17 AM Revision beb7ecbe (cdm-dataportal): ref #9265 adapting test to improved nomRef citation string generation
- 11:12 AM Revision f00c6f98 (cdm-dataportal): ref #9279 adapting class attribute handling to TypeDesignationDTO
- 10:21 AM feature request #9225 (Closed): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
- yes I also think that this ticket can be closed.
There might be still some cases in which LIEs might pop up but thes... - 09:31 AM feature request #9333 (New): Preference for display of protologue section in nomenclatural source section
- from #9266:
The protologue section should also be removed from local and DB preferences I guess as it probably has...
11/25/2020
- 10:48 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- so can we close the ticket?
- 10:46 PM feature request #9192 (Feedback): Layout issues for source in taxonnode details
- Are these still open issues. To me it looks like most of it is solved somehow. But maybe I do not understand some of ...
- 10:40 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- ... for TaxonNodes.source we should keep indentation of "more" as it is followed by "Related persons"
- 10:36 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- Can we adapt single source layout according to nomenclatural source layout?
So we
* move External Link up and... - 09:54 PM feature request #9332 (Closed): Rename TypeDesignationBase.source to .designationSource
- as simple "source" creates confusion as there are also the general sources attached to TypeDesignationBase.
- 09:37 PM feature request #6581 (Closed): Make all microreferenced references OriginalSources
- I think we can close this ticket now. Please reopen if you think there is still something open that is not yet handle...
- 09:32 PM feature request #9331 (Closed): Distinguish DescriptionElementSource and NamedSource
- ... NamedSource is now used in more cases and DescriptionElementSource should have a backlink to DescriptionElement
... - 09:24 PM task #9330 (Closed): Remove "NomenclaturalSource" from OriginalSourceType
- As nomenclatural sources now have there own subclass PrimaryTaxonomicSource is enough for nomenclatural sources.
H... - 09:14 PM Revision dba500e8 (cdmlib): ref #6623 include microReference in DefaultReferenceCacheStrategy.getCitation(...) (cont.)
- 08:59 PM bug #6623 (Resolved): formatter for bibliografic citations with citationDetail
- This should be something like DefaultReferenceCacheStrategy.getNomenclaturalCitation(Reference, String) but for bibli...
- 08:58 PM Revision da04d3c7 (cdmlib): ref #6623 include microReference in DefaultReferenceCacheStrategy.getCitation(...)
- 08:55 PM Revision 3107f6d9 (cdmlib): cleanup
- 08:16 PM feature request #9194 (Resolved): Make RelationshipBase and NomenclaturalStatus reference OriginalSource
- I guess this is fixed as we use it already in TaxEditor
- 08:10 PM feature request #9329 (Closed): Implement sec reference as original source in dataportal
- This is a remaining issue from #9222 as model change is required first.
Also have in mind to adapt jsonConfigura... - 08:08 PM feature request #9328 (Closed): Adapt Editor to switch to originalSource for taxon secundum
- This is the remaining issue from #9199.
Requires model implementation #9327 - 08:07 PM feature request #9327 (Closed): Make taxon secundum reference an original source
- copied from #6581
- 08:04 PM feature request #9326: Show all authors in bibliographic references
- The third screen shot shows a (new?) truncation of a long title. Looks not bad but is not correct. In this case Fragi...
- 08:02 PM feature request #9326 (Closed): Show all authors in bibliographic references
- In PhycoBank it is necessary to show a complete reference including all bibliographical authors. This is also relevan...
- 08:01 PM Revision 22ac5dcd (cdmlib): change name for TaggedEntityReference
- 07:29 PM feature request #9325 (Duplicate): Enable section in specimen type designation
- The idea is to select or create a section for the typification (of the name we are coming from). Might be necessary f...
- 07:15 PM feature request #9324 (Closed): Enable designation reference editing in name type designation
Main issues:
6: enable to select an available section (new names) or create a new section (for e.g. lecto- or n...- 06:35 PM bug #9322: Remove invalid designation taxon relationship
- Find possible cases:
~~~sql
SELECT tr.id, tb1.titleCache fromx , tb2.titleCache tox, tr.*
FROM TaxonRelationship... - 02:38 PM bug #9322 (Closed): Remove invalid designation taxon relationship
- Invalid designations are simply names which are not valid and therefore are called "designations" only not "names".
... - 06:21 PM Revision 7f5fe60c (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relationship (cont. 3)
- 06:15 PM Revision a647b46a (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relationship (cont. 2)
- 06:10 PM Revision 86b95854 (cdm-dataportal): ref #9279 using taggedText in TypeDesignationDTO in portal
- 06:08 PM Revision d8417735 (cdmlib): ref #9279 TypeDesignationDTO basing on new class RepresentableEntityReference
- 06:07 PM Revision 562f293f (cdmlib): ref #9265 making use of nomenclaturalSource->nomenclaturalCitation - extending initStrategy
- 05:53 PM Revision adbd3997 (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relationship (cont.)
- 05:49 PM Revision d9853ce6 (cdm-vaadin): cleanup
- 05:49 PM Revision 8cf3ca0a (cdm-vaadin): ref #9322 adapt vaadin to removed invalid designation relationship
- 05:46 PM Revision e2771053 (cdm-dataportal): ref #9279 adding TypeDesignationDTO to cdm_ws_base_uri()
- 05:46 PM Revision 11358be4 (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relationship
- 05:25 PM Revision e4c8c2c8 (cdmlib): cleanup
- 05:25 PM Revision 1ffd1c27 (cdmlib): ref #9322 remove invalid designation relationship from cdmlib
- 05:09 PM Revision 4fa58f06 (cdm-dataportal): ref #9265 making use of nomenclaturalSource->nomenclaturalCitation
- 05:08 PM feature request #4644 (Rejected): json lib incorrectly serializes values containig the characters [, ], {, }
- this is no longer relevant since we no longer need to get the microreference separately commit:aa06c1f1a2
The hack... - 05:06 PM Revision aa06c1f1 (cdmlib): ref #9265 introducing NomenclaturalSourceBeanProcessor to add nomenclaturalCitation to web service responses
- 03:16 PM task #9222 (Resolved): Adapt dataportal to switch to originalSource for remaining single sourced classes
- this should be mainly fixed, only needs final review
- 03:06 PM task #8275 (Worksforme): [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- AM:
Es gibt noch das Ticket #8275 , welches ich erstellt habe, als ich noch nicht so genau wußte, was es mit der A... - 03:04 PM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- Andreas Müller wrote:
> All invalid names (term ids may need to be adapted)
I think this is handled sufficiently ... - 03:03 PM task #9265 (Resolved): Adapt dataportal to new protologue handling
- 03:03 PM task #9265: Adapt dataportal to new protologue handling
- new ticket for discussion on display of ExternalLink.description: #9323
- 12:25 PM task #9265: Adapt dataportal to new protologue handling
- Andreas Kohlbecker wrote:
> this is basically implemented, tests are pending.
>
> One question in advance: Extern... - 03:01 PM task #9323 (New): discuss display of ExternalLink.description
- ExternalLink has the property description, how should this be handled in case of the protologues? I suggest using foo...
- 02:57 PM Revision 61e84a73 (cdmlib): ref #9265 implementing protologueLinks web service
- 02:53 PM Revision a8393f17 (cdm-dataportal): ref #9265 implementing test for nom-ref and protologues, also preparing for ref #9319 - 2
- 02:46 PM Revision c11d7e10 (cdm-dataportal): ref #9265 implementing test for nom-ref and protologues, also preparing for ref #9319
- 02:42 PM task #8055 (Rejected): Correct formatting for invalid designations
- As Invalid Designation relationships are not supported anymore (as they are incorrect, #9322) this ticket can be clos...
- 02:18 PM Revision 180653b7 (taxeditor): remove create/change to invalid designation handler
- 02:14 PM Revision 99a52e55 (cdmlib): ref #9282 fix NPE in nomenclaturalStanding computation
- 01:51 PM Revision d5de0b1f (cdm-dataportal): ref #9265 getting citationDetail from NomenclaturalSource
- 01:22 PM feature request #9321 (New): Make availability of pro-parte synonyms configurable
- Mostly pro parte synonyms should not be created in TaxEditor, therefore it should be configurable whether the menu it...
- 12:25 PM Revision ceeaac02 (taxeditor): fix microreference saving
- 12:20 PM bug #9241: replace/adapt descriptionPart in render templated
- I guess this should be done shortly after the current release so I put it to the current milestone for now so we do n...
- 12:18 PM feature request #9225: Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
- Andreas Müller wrote:
> I think the vaadin test are now fixed (?). So can we close this ticket?
?? - 12:17 PM task #9266: Remove protologue section from TaxEditor
- Katja Luther wrote:
> >
> > Maybe we could even use the above preference to show or not show the external link sec... - 12:12 PM feature request #9320 (In Progress): Move additional publication information to nomenclatural source
- copied from #6589 (see discussion starting at #6589#note-24)
Currently it is stored as name description but the da... - 12:04 PM feature request #6589: Handle protologue as original source with URI link
- Andreas Kohlbecker wrote:
> Interesting, that the UUID is different from that in the data portal code ('cb2eab09-6d9... - 10:58 AM feature request #6589: Handle protologue as original source with URI link
- also in
* cdm_production_cichorieae
* cdm_production_euromed
* cdm_production_euromed_caucasus
* cdm_productio... - 10:44 AM feature request #6589: Handle protologue as original source with URI link
- Interesting, that the UUID is different from that in the data portal code ('cb2eab09-6d9d-4e43-8ad2-873f23400930').
... - 10:37 AM Revision 8d86ce45 (taxeditor): smaller layout issues and avoid NPE
- 09:42 AM Revision 1ac5fff7 (cdmlib): avoid NPE and CCE
11/24/2020
- 11:04 PM Revision 1918f07a (cdmlib): ref #9279 fix TypedEntity for source
- 10:36 PM feature request #6589: Handle protologue as original source with URI link
- Additional Publications do definetely exist, e.g. in E+M or caryo_spp
~~~sql
SELECT db.DTYPE, db.id, feature.titl... - 09:54 PM feature request #6589: Handle protologue as original source with URI link
- I found a special case in the data portal code for the feature:
~~~
UUID_ADDITIONAL_PUBLICATION = 'cb2eab09-6d9d-... - 10:34 PM task #9265 (Feedback): Adapt dataportal to new protologue handling
- this is basically implemented, tests are pending.
One question in advance: ExternalLink has the property `descript... - 10:26 PM Revision df2b235a (cdm-dataportal): ref #9265 switching to NomenclaturalSource.links for protologues - comment
- 10:16 PM Revision f9b5740e (cdm-dataportal): ref #9265 switching to NomenclaturalSource.links for protologues
- 10:12 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable
- Reference selectable for basionym, replaced synonym, and validation. The ticket can be closed.
- 05:18 PM bug #9318 (Resolved): TaxonNameEditor: nomenclatural reference no longer selectable
- this should be fixed now, can you please review?
- 05:17 PM bug #9318 (In Progress): TaxonNameEditor: nomenclatural reference no longer selectable
- 05:13 PM bug #9318 (Duplicate): TaxonNameEditor: nomenclatural reference no longer selectable
- 05:10 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable
- this is actually a bug introduced with #9229 - implementation was incomplete.
- 04:49 PM bug #9318 (Closed): TaxonNameEditor: nomenclatural reference no longer selectable
- after the changes that turn the nomenclatural reference into a `DescriptionElementSource` (#9225, #6581) the nomencla...
- 09:58 PM Revision 27a6e8d7 (cdmlib): ref #9279 add TypedEntities to TypeDesignationDTO
- 09:57 PM Revision 2fb2834c (cdmlib): cleanup
- 09:45 PM Revision a0ab64df (cdm-dataportal): ref #9279 adapt orderdTypeDesig type in cdmdataportal
- 08:55 PM Revision d38359c9 (cdm-vaadin): ref #9279 fix type and improve generics for TypedEntityReference (vaadin, cont.)
- 08:51 PM Revision 47f6500b (cdmlib): ref #9279 use RegistrationDTO instead of TypedEntityReference for TypeDesignations
- 08:36 PM Revision 7f1705a9 (cdmlib): cleanup
- 07:30 PM Revision 6d344620 (cdmlib): ref #9279 fix make WorkingSet a Map again and cleanup
- 07:04 PM task #9319 (New): adapt name render templates to new nomenclatural source which also contain protologues as external links
- 1. The render templates still refer to the old model in which protologues have been handled via name descriptions.
2... - 06:56 PM Revision 32955f5b (cdmlib): ref #9279 make WorkingSet a Map again and fix typo in RegistrationDTO attribute and fix jsonConfigurations
- 06:23 PM Revision cbe1466f (cdm-vaadin): ref #9279 improve generics for TypedEntityReference (vaadin)
- 06:23 PM Revision de5e3f7c (cdm-vaadin): ref #9279 extract TypeDesignationWorkingSet as top level class and some cleanup (vaadin)
- 06:16 PM Revision c386f139 (cdmlib): ref #9279 improve generics for TypedEntityReference
- 05:31 PM Revision 7471539c (cdmlib): ref #9279 separate formatting from TypeDesignationSetManager and extract TypeDesignationWorkingSet as top level class and some cleanup
- 05:17 PM Revision c1c4b55f (cdm-vaadin): ref #9318 fixing problem with NomenclaturalSource selection in TaxonNameEditor
- 05:12 PM feature request #9229 (In Progress): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- reopening since this implementation is incomplete, see #9318
- 03:14 PM Revision a5a8be33 (taxeditor): ref #8769: move source ref to configuration wizard
- 03:00 PM Revision 842cd0b7 (cdmlib): cleanup
- 02:58 PM Revision 5c5865f6 (taxeditor): ref #8769: structure the configuration elements - add source
- 02:39 PM feature request #8769: Biocase import configuration should be shown when clicking on import button
- the wizard is structured in the way described above.
- 12:55 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking on import button
- 12:55 PM feature request #8769: Biocase import configuration should be shown when clicking on import button
- now the configuration dialog is opened with every click on import and the classifiction is added to the config wizard.
- 02:36 PM Revision a63e71bd (taxeditor): ref #8769: structure the configuration elements
- 02:35 PM Revision 5ca40190 (cdmlib): ref #9279 remove redundant typifiedNameRef (TypedEntityReference) and cleanup
- 12:57 PM Revision 19793be6 (cdmlib): cleanup
- 12:56 PM Revision f1145594 (cdmlib): ref #9282 adapt dataset.dtd to NomenclaturalStanding
- 12:23 PM Revision 7b5149a3 (cdmlib): preliminary fix compile error in SchemaUpdater_5185_5186
- 12:18 PM Revision 9d43b70b (cdmlib): cleanup
- 12:16 PM Revision c14761c5 (cdmlib): ref #9272 remove invalid state from nom. ambig. and nom. confus.
- 12:13 PM Revision 0edc55f4 (cdmlib): ref #9272, ref #5794 adapt taxon ordering to nomenclatural standing
- 12:13 PM Revision 1d9b1314 (cdmlib): cleanup
- 11:50 AM Revision e84897d0 (taxeditor): adapt biocase import views
- 11:44 AM Revision 3370888f (cdmlib): add termNodeDto to list of terms of termTreeDto
- 11:36 AM Revision 8ae425dd (cdmlib): add classification to config string
- 11:00 AM Revision d0b9755a (taxeditor): ref #9266: layout issues
- 10:37 AM feature request #5795: [DISCUSS] Do we need comb. ined. as a nomenclatural status?
- The status has been implemented a couple of years ago so
- 08:54 AM Revision 196b09e5 (taxeditor): ref #9266: remove more section in nomenclatural source and keep protologue label
- 08:38 AM Revision ccdf755b (taxeditor): remove max number of elements in combo boxes
11/23/2020
- 10:12 PM Revision 9e82c512 (cdmlib): ref #9279 remove redundant string and TaggedText computing and fix post separator for names type sets
- 10:10 PM Revision 88317626 (cdmlib): cleanup
- 09:14 PM Revision 317bee5c (cdmlib): cleanup
- 08:24 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
- As this is a milestone interal ticket only I remove the target version
- 01:04 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
- confirmed! the commit:374e76ca85 for #6581 fixes this issue
- 04:06 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
- There is no specific web service for protologues so only the dataportal needs to be adapted.
- 02:10 PM bug #8833 (Duplicate): distribution editor: Exception when filtering by taxon
- tested at the example of http://test.e-taxonomy.eu/cdmserver/cichorieae/app/distribution#!distGrid
could not repro... - 01:17 PM bug #9317 (In Progress): [DISCUSS] Handle NameTypeDesignations on name basis not on homotypic group basis in outputs
- WGB:
Bei Gattungen und infragenerischen Rangstufen, die auf anderen Namen basieren wird [...] eine Kombination (Ar... - 09:56 AM feature request #9316: Add preference to define number of initialy shown elements in drop down menus
- As such dropdowns exist at many places we should have a predicate like "number of rows in dropdown" and define which ...
- 08:54 AM feature request #9316 (New): Add preference to define number of initialy shown elements in drop down menus
- mail ERS:
Bei der Auswahl des Distribution Status im Details View habe ich ein scroll-down-Menü, welches mir aber ... - 09:44 AM bug #6757 (Worksforme): AbcdImportWizard has all configurator flags set to false
- no, this is fixed in the meantime
11/20/2020
- 11:09 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- 11:08 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
- Works as expected
- 11:07 PM feature request #9299 (Feedback): Add LSID to author and reference details
- In general this is fixed.
Only issues:
* can we move URI above DOI and LSID in Reference Details View.
* can ... - 11:03 PM bug #6947 (Closed): Incorrect error for LSID field
- This works as expected
- 10:58 PM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
- This is fully fixed
- 10:47 PM feature request #9282 (Resolved): Add nomenclatural standing
- still need to update in cdmlight
- 07:07 PM feature request #9282 (In Progress): Add nomenclatural standing
- 10:44 PM bug #9312 (Resolved): NullPointerException (NPE) in TaxonNamePopupEditor
- This should be fixed with the current update script. You need to reinstall a version prior to 5.18.0 and run the upda...
- 03:34 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
- this seems to be due to a problem in the model upgrade script which misses to handle NomeclaturalSources correctly an...
- 01:51 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
- beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s...
- 10:07 PM feature request #5795 (Resolved): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
- 10:00 PM Revision e394d81a (cdmlib): ref #6591 fix SingleTermRemover
- 09:18 PM Revision 53ffcb3d (cdmlib-apps): ref #9282 adapt app-import to nomenclaturalStanding
- 09:17 PM Revision 88a917f1 (cdmlib-apps): ref #6591 adapt original spelling in app-import
- 07:05 PM Revision af1ee281 (taxeditor): ref #9282 adapt TaxEditor to nomenclatural standing
- 06:32 PM Revision 8d7efe50 (taxeditor): update taxeditor to v5.18.5
- 06:26 PM Revision 358b5ee6 (cdm-vaadin): update vaadin to v5.18.5
- 06:23 PM Revision 14a6a2a9 (cdmlib): fix endSchemaVersion in SchemaUpdater_5184_5185
- 06:20 PM task #9315 (Closed): Remove old single source citation and microCitation columns
- Include all single sources from #6581
For nomenclatural source it may look like
~~~sql
//#9315 remove ... - 06:17 PM task #9314 (New): Swap 'is conserved against'
- We may think about swapping the direction of "is conserved against" .
This might be an advantage when evaluating t... - 06:09 PM Revision 1f256a93 (cdmlib): update cached model to 5.18.5
- 06:08 PM bug #8859 (Closed): RegistrationItemNameAndTypeButtons invalid regex pattern
- 06:08 PM bug #8859 (Resolved): RegistrationItemNameAndTypeButtons invalid regex pattern
- Applied in changeset commit:cdm-vaadin|2deb1814c68bd161651f888988f74b04e659a928.
- 06:08 PM Revision 2deb1814 (cdm-vaadin): fix #8859 quoting literal string before use in regex function
- 06:07 PM Revision 374e76ca (cdmlib): ref #6581 fix update script for nomenclatural sources / nomenclatural status sources
- 06:07 PM Revision 1712450e (cdmlib): finalize update script vor version 5.18.4
- 06:07 PM Revision 11a38b45 (cdmlib): ref #9311 adapt name parser to updated nom status labels
- 06:07 PM Revision cc259f91 (cdmlib): minor
- 06:07 PM Revision 0f9c4a8b (cdmlib): ref #9311 adapt TermRepresentationUpdater for idInVoc updating
- 06:07 PM Revision 8b5c5b10 (cdmlib): ref #9272 add 5 new nomenclatural status types
- 06:06 PM Revision 9f381a15 (cdmlib): ref #6591 Use TaxonName.nomSource.NameUsedInSource for original spelling
- 06:06 PM Revision f9404583 (cdmlib): ref #9282 adapt NomenclaturalStatusType.csv to nomenclaturalStanding
- 06:06 PM Revision bc07028c (cdmlib): ref #9282 some final fixes and javadoc updates for NomenclaturalStatusType and nomenclaturalStanding
- 06:06 PM Revision d99f9c25 (cdmlib): ref #9282 adapt some nomenclatural standings in test dataset and fix/cleanup update script
- 06:06 PM Revision 13e8b7f4 (cdmlib): ref #9311 update labels in test terms
- 06:06 PM Revision a3a00b7a (cdmlib): ref #9282 add NomenclaturalStanding and INomenclaturalStanding and related method in TaxonName, NomenclaturalStatusType and NameRelationshipType
- 06:06 PM Revision 54aff43a (cdmlib): ref #9311 update script for nom status and name rel term label updates
- 06:06 PM Revision 62ea9850 (cdmlib): cleanup
- 05:08 PM feature request #9224 (Closed): openlayers map handles server error per layer and presents a user message
- fully solved
- 05:01 PM task #6591 (Resolved): Use name used in source for original spelling
- 04:48 PM bug #9313 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor
- please review once #9312 is also solved - needs prior communication with the dev team to check that the data base is ...
- 01:58 PM bug #9313 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor
- beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s...
- 04:46 PM Revision 004972d5 (cdm-vaadin): ref #9313 further init strategy extension to adapt to new OriginalSources ref #6581
- 04:45 PM feature request #9272 (Resolved): Add missing nomenclatural status
- Finally we added
protected
in sched.
pro syn.
orth. var. (as status)
comb. ined. - 03:01 PM bug #9311 (In Progress): Update some (abbrev) labels for nomenclatural status types
- 12:40 PM bug #9311 (Closed): Update some (abbrev) labels for nomenclatural status types
- opus. utique oppr. => op. utique oppr.
nom. orth. cons. => orth. cons.
nom. orth. cons. prop. => orth. cons. prop.
... - 01:05 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
- 09:34 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
- Gomphonemopsis ligowskii is published and has a holotype.
I inserted a unpublished test reference Kusber in Zeitschr... - 09:17 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
- Checked this example. The issue is perfectly solved. Before we close the ticket, I want to find an example with mixed...
- 11:51 AM Revision dea3754f (taxeditor): ref #9307: add preference page for termtrees and adapt label provider
- 11:51 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
- please review
- 11:06 AM Revision aa2fb1b5 (cdmlib): correct handling of doubtful synonyms
- 11:02 AM Revision 68bfcb66 (cdmlib): avoid NPE in Typedesignation Manager for sources without reference
- 10:54 AM Revision 43e9fd92 (taxeditor): move condensedDistribution preference to distribution preferences
- 08:40 AM bug #9310 (New): Deleting a taxon with all synonyms fails for the basionym
- The synonym set as basionym is not deleted because the check for basionym prevents the delete. There should be anothe...
- 08:32 AM feature request #7797: Second nomenclatural reference
- AM:
... Eine Idee wäre, den Text dieser zweiten Referenzen statt in die NameFacts in die neue Nomenclatural Sourc...
11/19/2020
- 07:29 PM Revision c23a56d8 (cdm-dataportal): harmonizing loading indicator color with other openlayers controls
- 07:05 PM Revision fc4f8c8d (cdm-dataportal): ref #9224 reporting WMS tile loading errors per layer in the message console
- 05:14 PM bug #9184 (Closed): WSOD in advanced search cdm_dataportal/search
- After re-indexing the problem does no longer occur.
discrepancies of the search index with the database could be m... - 01:38 PM bug #9184: WSOD in advanced search cdm_dataportal/search
- This problems seems to be caused by search indices which are not in sync with the cdm db.
The data portal now igno... - 05:06 PM Revision 78fb1106 (cdm-dataportal): fix for unavailable custom_placeholder_image
- 03:38 PM feature request #9309: Improve handling of specimen without titlecache in cdmLight
- The problem here is not primarily a cdmlight issue but an issue of missing title cache strategy (formatter) for Deriv...
- 01:55 PM feature request #9309 (New): Improve handling of specimen without titlecache in cdmLight
- copied from #9262:
Ausgabe -title cache generation not implemented-. Das kommt, soweit ich sehe, nur bei specimens... - 03:09 PM Revision 72408704 (cdmlib): fix presence questionable handling in test terms
- 02:12 PM Revision dee298b3 (cdmlib): Update javadoc for CdmPreference related classes.
- 02:01 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- This is fixed for all sources listed above, for sec reference I create a new ticket or we create a new one when the s...
- 01:58 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- all issues are implemented except the specimen without titleCache, therefore a new ticket exist (#9309)
- 01:56 PM feature request #9262 (Resolved): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- 01:36 PM Revision 04b1e433 (cdm-dataportal): ref #9184 ignoring null entities in lucene search result and showing error to user
- 01:32 PM Revision cb6764ac (taxeditor): ref #9262: adapt cdmlight preference handling to renamed predicate
- 12:15 PM task #9266: Remove protologue section from TaxEditor
- Andreas Müller wrote:
> The protologue section should also be removed from local and DB preferences I guess as it pr... - 12:11 PM feature request #9297 (Resolved): Improve name of zip file for cdmLightExport
- please review
- 12:10 PM feature request #9299 (Resolved): Add LSID to author and reference details
- please review
- 11:50 AM Revision a33cb038 (cdmlib): PreferencePredicate condensedDistributionRecipe not only for cdmLight
- 11:47 AM Revision 3bf91ce5 (cdmlib): CondensedDistributionRecipe enum is IKeyLabel
- 10:51 AM Revision 36ac0d5d (taxeditor): add lsid field to person details
- 10:39 AM Revision c875d034 (taxeditor): add lsid field to reference details
- 10:34 AM Revision 99197d76 (taxeditor): ref #9297: improve zip file name - continue
- 10:33 AM Revision 8fd0ede6 (taxeditor): ref #8774: remember expansion state when removing feature from feature tree
- 10:26 AM Revision fb43bf21 (taxeditor): ref #9297: improve zip file name
- 10:12 AM Revision 8d36f034 (cdmlib): revert disabling condensed distr. string and add missing presence absence term
- 09:04 AM Revision 9a899f86 (cdmlib): disable condensed distribution string in cdmlight export test
11/18/2020
- 04:50 PM Revision 5d62d265 (cdmlib): ref #9262: minor
- 03:59 PM Revision 36fa3d85 (taxeditor): ref #9297: add preferences and some code cleaning
- 03:58 PM Revision c842935a (cdmlib): ref #9262: add possibility to export condensed distribution string - new preference predicate
- 03:56 PM Revision ddbbb621 (cdm-vaadin): ref #9308 slight improvement for type status in bold letters
- 03:54 PM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Even if the plural "s" problem is fixed, there are also other problems with showing the type status in bold letters...- 03:51 PM Revision 44bef338 (cdmlib): ref #9262: add possibility to export condensed distribution string
- 02:03 PM Revision 40eb3245 (cdmlib-apps): remove methods not in use in CubaExcelImport
- 02:02 PM Revision 46ade909 (cdmlib-apps): replace links to trac tickets by links to redmine tickets in javadoc
- 02:02 PM Revision 8275a22c (cdmlib-apps): cleanup
- 11:49 AM Revision da219650 (cdm-vaadin): ref #9290 comment on typdesignation citation problem
- 10:25 AM Revision 101d7930 (cdm-vaadin): cleanup
- 10:01 AM Revision 43dd85e9 (cdmlib): cleanup
- 10:01 AM Revision 138715e0 (cdmlib): replace links to trac tickets by links to redmine tickets in javadoc
11/17/2020
- 06:00 PM bug #9230 (Resolved): Type in preparation of a published name displayed in PhycoBank Portal Name Page
- please review
- 01:17 PM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
- it is the portal/name/{uuid}/typeDesignations which misses to filter the entities
- 05:59 PM Revision 71152358 (cdm-dataportal): ref #9230 fixing bug in test assertion
- 05:47 PM Revision 41dde72f (cdmlib): ref #9230 RegistrableEntityFilter function for type designations and using it for all relevant controller methods
- 05:47 PM Revision cc665988 (cdmlib): ref #9230 RegistrableEntityFilter to centralize filter functions
- 03:51 PM task #9308 (New): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- 03:51 PM task #9308 (Closed): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- this task has been copied from #9302
see also #9306
Also fix the dangling plural `s` of "isotypes" which is not... - 10:14 AM Revision b0e51e45 (taxeditor): ref #9266: some layout issues and label renaming
- 09:09 AM Revision fc20040c (cdmlib): ref #9204 upgrade xstream version in cdmlib
- 09:07 AM task #9189: Move datasource view to taxeditor.local
- Is this for review?
- 09:01 AM feature request #9307: Preferences for display of termtrees and entries
- As this is related to #8774 I move it to the current milestone
- 08:27 AM feature request #9307 (Closed): Preferences for display of termtrees and entries
- Like for terms we need a preference and a preference page for how to display term trees/entries.
11/16/2020
- 05:31 PM Revision b728050e (cdm-dataportal): ref #9230 implementing test for exposure of unpublished type designation
- 02:44 PM task #9306: Registration result list: supress "designated by" reference in portal
- example url http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/registration-search/filter?ident...
- 02:43 PM task #9306 (Closed): Registration result list: supress "designated by" reference in portal
- 02:42 PM task #9306 (Resolved): Registration result list: supress "designated by" reference in portal
- Applied in changeset commit:cdm-dataportal|947ee97b814df065ae6381649c29ba3a5c5bd272.
- 02:01 PM task #9306 (Closed): Registration result list: supress "designated by" reference in portal
- this task has been copied from #9302
The portal used the `summaryTaggedText` to render the entries in `compose_reg... - 02:42 PM Revision 947ee97b (cdm-dataportal): fix #9306 filtering designated by reference out for registration list
- 10:47 AM Revision 1d916b0b (taxeditor): ref #9266: minor
- 10:24 AM Revision be28cd99 (taxeditor): code cleaning
- 09:58 AM feature request #9305: Include additional TypeDesignationStatus sort order (term tree) in CDM terms
- This requires that term tree can be loaded also during term loading. This in future should come from the term server ...
- 09:54 AM feature request #9305 (New): Include additional TypeDesignationStatus sort order (term tree) in CDM terms
- For type designation status we need different orders. In dropdown menus like in TaxEditor the current order which has...
- 09:25 AM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
- As this is related to the implementation of #6581 I move it to the current milestone.
- 09:20 AM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
- AM (Original Mail): ja das war mir auch schon aufgefallen. Habe keine richtige Lösung dafür. Klar ist, wenn unter „mo...
- 09:24 AM feature request #6581 (Resolved): Make all microreferenced references OriginalSources
- This is more or less solved. Open issues hshould be moved to new tickets if not yet done.
- 09:16 AM feature request #9304 (New): While creating new reference choosing the type first
- To avoid generic references the user should have to choose the reference type first when entering a new reference.
- 09:16 AM bug #9281: Set basionym not available for heterotypic synonyms after drag & drop
- This is core functionality so we should implement it soon.
- 09:11 AM feature request #9297: Improve name of zip file for cdmLightExport
- WGB: da fände ich die erste Option (Taxon/Klassifikation zuerst) auch schöner.
- 09:10 AM bug #9286: Re-connect and change user should be disabled if no datasource is connected yet
- please review
11/14/2020
- 08:34 PM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
- Please be aware that we do have a predicate for these attributes already. Better would be to implement the specific n...
- 08:29 PM bug #8984: Registration search result list: Format display of two type specimens
- At least the kommata handling might be fixed by implementations from #9279, but not sure
- 08:15 PM task #9300: Name Page: harmonize media specimen lectotype representations
- Andreas Kohlbecker wrote:
> Since the Citation part will end with a dot character, is seems incorrect to write "desig... - 08:05 PM bug #9302: Phycobank related issues for TypeDesignation formatting
- AM:
ich habe, wie besprochen versucht den Punkt
"The search result in phycobank currently includes citation inf... - 07:14 PM bug #9302: Phycobank related issues for TypeDesignation formatting
- AM: Bei der Diskussion ums Typusmodul vor ca. 2 Jahren hatten wir diskutiert und später auch implementiert, dass es 2...
- 07:12 PM bug #9302: Phycobank related issues for TypeDesignation formatting
- AM:
Bisher war gewünscht, Quellen als Kurzzitat mit „Autor (Jahr)“ anzugeben, was sowohl für die designated by Que... - 07:10 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting
- 05:05 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting
- In the Phycobank context a couple of issues for type formatting have been found, after TypeDesginationSetManager has ...
- 07:17 PM bug #9303 (New): [DISCUSS+IMPLEMENT] Make type designation micro references for non-lectotypes editable in TaxEditor
- AM:
Bei der Diskussion ums Typusmodul wurde damals beschlossen, dass wir lediglich bei Lecto-, Epi- und Neotypen u... - 06:41 PM Revision c3fed23d (cdmlib): ref #6591 fix SchemaUpdater_5184_5185 preliminary and add update script for moving original spellings
- 06:30 PM Revision 4272bcd2 (cdmlib): ref #6591 fix OriginalSpellingMover
- 06:29 PM Revision b08ed055 (cdmlib): ref #6591 fix SingleTermRemover
- 06:28 PM Revision 37e61bd2 (cdmlib): ref #9302 remove bracket around year in short citations for type designations and add citationDetail to short citations
- 06:26 PM Revision d98c0473 (cdmlib): cleanup
- 06:15 PM Revision 0ec42e61 (cdmlib): ref #6591 add first version of Original Spelling Mover
- 06:15 PM Revision 90b8a418 (cdmlib): add SchemaUpdater_5184_5185
- 12:36 AM feature request #9299: Add LSID to author and reference details
- As far as I understand WGB this is a functionality that is needed soon. As to me it sounds like easy to implement I s...
- 12:34 AM bug #6947: Incorrect error for LSID field
- I guess this is for review ...
11/13/2020
- 06:10 PM feature request #9301 (Closed): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- for all TypeDesignations where `typeStatus.hasDesignationSource() == true` field for citation and citationDetail need...
- 05:41 PM feature request #8308 (Feedback): Extend specimen type designation editor
- I can't see that there is anything missing:
type status:
image references representi... - 04:36 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- the Excel file belongs to the other ticket - cleaning up here ....
- 04:35 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- Update to the Excel file.
Now the reference type is also shown.
"Irregular" Reference Types are highlighted. - 03:13 PM task #9300 (Feedback): Name Page: harmonize media specimen lectotype representations
- Since the Citation part will end with a dot character, is seems incorrect to write "designated by", it better should ...
- 03:10 PM task #9300 (In Progress): Name Page: harmonize media specimen lectotype representations
- The name *Heterocapsa triquetra* f. *apiculata* Er.Lindem. has a media specimen as lectotype.
* The "designated ... - 01:41 PM Revision d8d71f2a (taxeditor): ref #9266: minor
- 01:39 PM Revision 0faab9c0 (taxeditor): fix #6947: fix error for empty lsid field
- 01:39 PM bug #6947 (Resolved): Incorrect error for LSID field
- Applied in changeset commit:taxeditor|0faab9c0c0eae654583982c6f067e89851f758ee.
- 11:09 AM feature request #9299 (Closed): Add LSID to author and reference details
- 11:04 AM feature request #9298 (New): Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
- IDInSource and IDNamespace are not needed for nomenclatural source therefore the display should be handled by a prefe...
- 10:42 AM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
- The zip file created by the cdmLight export should contain more informations about the data.
For example:
{TaxonN... - 10:39 AM Revision 316f9d85 (taxeditor): fix wrong background after changing rank in nameDetailElement
- 10:11 AM feature request #9296 (New): Preference to show/not show infrageneric epithet for species
- ERS:
Eingabe eines name in source: im Formular „New Scientific Name“ gibt es einen bug: das scroll-down-Menü für „Ra... - 10:09 AM feature request #9295 (New): Preference to set default reference type for new references
- ERS:
Bei der Eingabe einer neuen Referenz steht der „Reference Type“ standardmäßig auf „Generic“. Der häufigste Fall... - 10:07 AM feature request #9294 (New): New person dialog with protected titleCache
- ERS:
Wenn ich im Laufe der Eingabe einer neuen Referenz einen neuen Autor eingeben muss, öffnet sich im Dialogfeld „... - 09:06 AM feature request #9262 (In Progress): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- 08:58 AM feature request #7700 (Closed): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
- I think we can close this ticket as there is kind of a follow up ticket with #9279
- 08:22 AM Revision bdd421bd (taxeditor): fix empty datasource view
11/12/2020
- 05:52 PM Revision 398413cc (cdmlib): ref #9253 removing initstrategy from DTO service method - cleaning up
- 04:44 PM Revision ba48bce0 (cdmlib): ref #9253 removing initstrategy from DTO service method
- 04:02 PM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
- no more problems
- 03:23 PM bug #9289: LazyInitializationException (LIE) in NameTypeDesignationEditor
- fixed by commit:cdm-vaadin|84760d27
- 03:54 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
- 03:52 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
- this ticket is either completed or open tasks are copied to new tickets, so it can be closed
- 03:50 PM task #9293 (New): Use use DTO for Set<IdentifiableSource> sources in SpecimenOrObservationBaseDTO
- copied from #9252
- 03:21 PM Revision 84760d27 (cdm-vaadin): ref #6581 adapting init strategy to new original source handling
- 11:39 AM Revision 68e7703e (taxeditor): ref #9266: restructure nomenclatural source detail element
- 11:04 AM Revision 468ead78 (taxeditor): ref #9266: restructure nomenclatural source detail element
11/11/2020
- 03:36 PM Revision 9270c708 (cdmlib): ref #9262: add homotypic group sortindex
- 12:28 PM feature request #9292 (New): find by name parts search implemented
- Implement a search similar to the `TaxonListController.doFindByNamePart()` function which allows for filtering names ...
- 11:41 AM Revision 8f36abc7 (taxeditor): ref #9199: fix problems with nomenclatural reference details
- 11:34 AM bug #8592: consider renaming menu entry General->Switch User
- Currently it is not wanted that users connect to another db as this does not work correctly due to static term proble...
- 08:59 AM discussion #7917: Revise ReferenceSystemTerms
- Do you really think that a measurement method is the same as the mathematical model that is needed to make sense of t...
- 08:29 AM Revision adf08111 (cdmlib): ref #8774: save term tree informations
- 08:24 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Katja Luther wrote:
> > ...
> > This is caused by dirty data, I cleaned up the database, n...
11/10/2020
- 05:53 PM discussion #7917: Revise ReferenceSystemTerms
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> > > So you are planning to use the r... - 05:51 PM discussion #7917: Revise ReferenceSystemTerms
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > So you are planning to use the reference system for computati... - 11:07 AM discussion #7917: Revise ReferenceSystemTerms
- Andreas Müller wrote:
> So you are planning to use the reference system for computations in the near future?
Plac... - 09:44 AM discussion #7917: Revise ReferenceSystemTerms
- So you are planning to use the reference system for computations in the near future?
- 08:52 AM discussion #7917: Revise ReferenceSystemTerms
- BTW: the CRS for GPS is WGS 84
For solving the the current misconception in the model we need to distinguish the *... - 05:04 PM task #9291 (Closed): Clear all unnecesary TypeDesignation.citation entities and citationDetails
- **This ticket should be solved after #9290 is being released and deployed to phycobank**
This is the query to whic... - 04:59 PM bug #9290 (Closed): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- As shown in the analysis ( attachment:"TaxonName and Typedesignation citations unequal_diff.xlsx" ) using the `Regist...
- 02:48 PM Revision 2749233a (taxeditor): move menu item
- 02:42 PM Revision e2669604 (taxeditor): show menu items only once
- 12:19 PM bug #9286 (Resolved): Re-connect and change user should be disabled if no datasource is connected yet
- Applied in changeset commit:taxeditor|cea74dc3dd7328308f0fda121d2ccc5b7246c9a8.
- 12:17 PM Revision 5affe60a (taxeditor): ref #8774: do not allow duplicates in character editor
- 11:51 AM Revision e4a5c66f (taxeditor): ref #8774: do not allow duplicates in term tree editors if voc does not allow
- 11:34 AM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
- Buryatia belyaevae Kulikovskiy, Metzeltin & Lange-Bert. name type for Buryatia belyaevae Kulikovskiy, Metzeltin & Lan...
- 09:43 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Katja Luther wrote:
> ...
> This is caused by dirty data, I cleaned up the database, now the feature trees and the ... - 09:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> adding a child (which was a duplicate but the tree did not allow duplicates, don't know if t... - 09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
11/09/2020
- 03:44 PM Revision 59a68768 (cdmlib): fix syntax exception
- 03:39 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Unordered trees should preferably be ordered alphabetically by label or idInVoc or whatever the first part of the use...
- 03:29 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- When adding/removing terms the tree should stay expanded. Currently it collapses and you have to reopen it. Best woul...
- 03:27 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- ~~The duplicate check should be done when adding the term not only when saving it.~~
this is fixed. - 03:22 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- adding a child (which was a duplicate but the tree did not allow duplicates, don't know if this is relevant):
~~~
... - 03:13 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t... - 03:12 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t... - 03:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- ~~Changing the name of a vocabulary is not possible. The changes neither show up in the term tree editor nor do they ...
- 02:52 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an... - 02:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Can we show the details of a term anyway even if it is not editable in the term tree editor.... - 02:44 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Can we show the details of a term anyway even if it is not editable in the term tree editor. This is because the pure...
- 02:34 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named Area", "Others" and then...
- 02:31 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- It is now possible to open 2 term tree Editors of the same type. This is not wanted as a term tree editor always edit...
- 02:28 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
- Trying to open the feature tree editor opened it in the buttom panel and no tree appeared and no conext menu existed ...
- 02:25 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Drag&drop still seems to work like in the old version with no dirty flag but immediate save ... - 02:07 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
- ~~Drag&drop still seems to work like in the old version with no dirty flag but immediate save of change.~~
- 03:16 PM feature request #9288 (Closed): Add symbols for flags in use for term trees in term tree editor
- The flags are "allow duplicates", "order relevant" and "is flat".
As long as we do not have better symbols we coul... - 02:49 PM feature request #9287 (Closed): Show term details in details view of term tree editor
- From ticket #8774:
Can we show the details of a term anyway even if it is not editable in the term tree editor. Th... - 02:42 PM Revision cea74dc3 (taxeditor): fix #9286: add core expression to reconnect menu item
- 02:12 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
- Currently choosing the re-connect leads to a NPE
- 02:06 PM discussion #7917: Revise ReferenceSystemTerms
- I remember the outcome differently.
> conglomerate of different types of possibilities to define what has been use... - 01:33 PM discussion #7917: Revise ReferenceSystemTerms
- We had discussed this issue some years ago and as far as I remember the result was, that the term ReferenceSystem mig...
- 01:44 PM feature request #8402: ordering typedesignations in name and taxon page
- follow up tasks are copied to #9283, #9284, #9285
- 01:43 PM task #9285 (New): apply the order of the chosen TermTrees to the typedesignations in name and taxon page
- This should preferably implemented by adding a query parameter to the webservice delivering the typedesignations.
... - 01:40 PM feature request #9284 (New): Admin UI to define the TermTrees as sort order preset
- this is required at least for the order of typedesignations in name and taxon page, see #8402
- 01:37 PM task #9283 (New): Webservice for TermTrees implemented
- this webservice may be similar to the vocabulary web service.
It is important that the order of terms is retained - 01:23 PM bug #9215 (Closed): Drop down for empty rank does not work
- This seems to be fully fixed.
- 01:15 PM task #9266 (Feedback): Remove protologue section from TaxEditor
- The protologue section should also be removed from local and DB preferences I guess as it probably has no effect to u...
11/06/2020
- 10:03 PM Revision 361c1e1d (cdmlib): cleanup and javadoc
- 05:20 PM Revision 071a56e6 (cdm-dataportal): ref #8402 ref #9279 adapting sort order to latest changes in TypeDesignationSetManager - commenting
- 05:15 PM Revision 22354fa0 (cdm-dataportal): ref #8402 ref #9279 adapting sort order to latest changes in TypeDesignationSetManager
- 05:13 PM feature request #8402: ordering typedesignations in name and taxon page
- The sort order should follow the order of the type designation status terms either of that in the vocabulary or in a ...
- 05:12 PM task #9266 (Resolved): Remove protologue section from TaxEditor
- The protologue section is removed/commented, please review afterwards I will remove the code completely.
- 05:09 PM Revision 8d385449 (taxeditor): rename/structure language preferences - admin prefs
- 05:06 PM Revision 8ec0ee52 (taxeditor): rename/structure language preferences
- 05:04 PM Revision 85ff485a (taxeditor): ref #9266: remove protologue section - needs to be cleaned up
- 03:59 PM feature request #9282 (Closed): Add nomenclatural standing
- According to #9272 there are 4 classes of nomenclatural standing. These should be stored together with the accordings...
- 01:41 PM Revision b6099a9c (cdmlib): ref #8774: missing files
- 01:26 PM Revision 9ad46d6b (cdmlib): ref #9252 piping baseofRecord through KeyTermValueProcessor
- 01:24 PM Revision d5d943cb (cdm-dataportal): ref #9252 adapting portal to latest DTO changes
- 01:22 PM feature request #9272: Add missing nomenclatural status
- The situation has changed. Later isonym already exists as name relationship, not as status. At the same time there ar...
- 01:06 PM feature request #9279: Improve type designation formatting and TypeDesignationSetManager
- An example for unparsed specimen from Cactaceae: Selenicereus anthonyanus (Alexander) D.R.Hunt
Resulting in:
–... - 12:16 PM feature request #9279 (In Progress): Improve type designation formatting and TypeDesignationSetManager
- 12:05 PM bug #9281 (Closed): Set basionym not available for heterotypic synonyms after drag & drop
- mail ERS:
beim Zusammenstellen von Synonymen in einer homotypischen Gruppe im Freitext-Editor ist es anschließend ... - 11:19 AM Revision b8a1c0fe (taxeditor): fix i18n
- 10:46 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- all termtree editors are now switched to dtos. please review.
- 10:45 AM Revision a5c3b1fd (taxeditor): ref #8774: fix character creation
- 10:44 AM Revision 2cb9b55f (cdmlib): ref #8774: fix getPath of termnode
11/05/2020
- 05:18 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel()
- The property name IKeyTerm.message is misleading and confusing it should be renamed to label
----
From email co... - 04:04 PM report #8177 (Worksforme): Discuss: How to add originals of a type specimen
- We concluded that adding of intermediate originals to a specimen is a special case for phycobank. This usecase in not...
- 03:04 PM Revision c3e91e82 (taxeditor): add local to application MANIFEST
- 02:58 PM Revision cee85ae0 (taxeditor): ref #9154: fix fragment.e4xmi
- 02:21 PM Revision 1f3831c5 (cdmlib): cleanup
- 02:21 PM Revision ab1f58a9 (cdmlib): ref #9279 improve TypeDesignationSetManager
- 02:08 PM feature request #9279 (Closed): Improve type designation formatting and TypeDesignationSetManager
- these are open issues from #7700 and general issues
Some issues are
* parameterize formatting (with citation, w... - 12:50 PM Revision df35ccb3 (cdmlib): remove unused method in depracted FeatureNodeService
- 11:55 AM Revision de68e009 (cdmlib): ref #8774: avoid NPE in delete method
- 11:18 AM Revision f00aae44 (cdmlib): ref #8774: improve save method for new characternodes
- 09:58 AM feature request #9277: User rights for name, name type, and specimen type notes
- Submitters and curator(s) should have the same rights to create notes.
except for the status of the registrations:... - 09:23 AM feature request #9277 (New): User rights for name, name type, and specimen type notes
- Submitters and curator(s) should have the same rights to create notes.
Name editor:
Technical (currently enabled ... - 09:47 AM feature request #9278 (New): Notes for references
- Currently the curator has the option to fill
Editorial notes (for publication; not implemented yet)
Technical notes... - 09:32 AM Revision 8bf5dd93 (taxeditor): ref #8774: fix save of newly created character nodes
- 09:29 AM Revision 25b3a146 (cdmlib): ref #8774: save method for new characternodes
11/04/2020
- 04:20 PM Revision 6043d78e (cdm-dataportal): ref #9262 adapting dataportal to lowercase typedesignation status
- 03:16 PM Revision 002cdd32 (cdmlib): ref #9252 renaming property derivates to derivatives
- 03:16 PM Revision 0ff8cbcf (cdm-dataportal): ref #9252 renaming property derivates to derivatives - adapting dataportal
- 03:15 PM Revision 8b35bc36 (cdmlib): reference search for abbrevTitleCache and titleCache
- 03:15 PM Revision 5a8468de (cdmlib): ref #9262: smaller changes
- 03:09 PM Revision f51e4e4e (cdm-dataportal): ref #9252 removing deprecated property listLabel - adapting dataportal
- 03:09 PM Revision 03b91810 (cdmlib): ref #9252 removing deprecated property listLabel
- 03:04 PM Revision 8a605860 (cdm-dataportal): ref #9252 using IEnumTerm for recordBase - adapting dataportal
- 12:42 PM Revision 25dfcf2f (cdmlib): ref #9252 using IEnumTerm for recordBase
- 12:42 PM Revision 54b7f04e (cdmlib): ref #9252 documenting further needed refactoring
- 12:34 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
- tasks regarding DerivateDataDTO copied to other ticket
- 12:31 PM task #9276 (New): improve DerivateDataDTO
- copied from #9252
DerivateDataDTO needs harmonization:
* find better class name
* Use `List<MediaDTO>` instead... - 12:08 PM task #9268: Check cdm for GC G1 humongous objects problem
- Andreas Kohlbecker wrote:
> this finding can be especially relevant for imports and exports, therefore we should exa... - 12:00 PM task #9268 (Feedback): Check cdm for GC G1 humongous objects problem
- this finding can be especially relevant for imports and exports, therefore we should examine I/O functionalities whic...
- 11:29 AM task #9268: Check cdm for GC G1 humongous objects problem
- further results from the test server after startup and running the Data Portal Cacher for E+M by 8,5% (attachment:g1-...
- 10:47 AM task #9275 (New): Cleanup apache configuration from "AllowEncodedSlashes On"
- see #7563 for servers which need to be cleaned
- 10:42 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
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