Activity

From 10/29/2020 to 11/27/2020

11/27/2020

07:22 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel(): This has been fixed. As all code compiles now I think review is not necessary. Please review if you think it is needed. Andreas Müller
06:33 PM bug #9322 (Resolved): Remove invalid designation taxon relationship: This is generally fixed. Only in integration_reference there is still 1 record left (mail sent to AK).
After relea... Andreas Müller
05:33 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference: Andreas Müller wrote:
> For "Section" the type is "InProceedings" now which is generally false. We should use "Gener... Andreas Müller
05:26 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference: I got the following NPE when playing around with the dialog:
~~~
last remote method : http://test.e-taxonomy.eu... Andreas Müller
05:25 PM bug #8547 (Feedback): Default type of a newly created inReference should depend on the type of the reference: For "Section" the type is "InProceedings" now which is generally false. We should use "General" as before or even bet... Andreas Müller
04:24 PM feature request #5795 (Closed): [DISCUSS] Do we need comb. ined. as a nomenclatural status?: It has been added now. So I close the ticket. Andreas Müller
04:23 PM feature request #6589 (Closed): Handle protologue as original source with URI link: I think we can close this ticket. Andreas Müller
04:21 PM bug #8326 (Closed): update labels for is blocking name and is isonym: Andreas Müller
04:18 PM bug #9335 (Closed): termTree webservice response misses titleCache: Andreas Kohlbecker
03:40 PM bug #9335 (In Progress): termTree webservice response misses titleCache: Andreas Kohlbecker
02:31 PM bug #9335 (Feedback): termTree webservice response misses titleCache: There were no changes/commits for long time on the above tickets. So I don't think it is related.
Maybe related to... Andreas Müller
02:20 PM bug #9335 (Closed): termTree webservice response misses titleCache: 1. termTree webservice response misses the titleCache field
1. ~~there is evidence for that the order of the terms... Andreas Kohlbecker
04:14 PM bug #9124 (Closed): Altitude feature should have [m] as measurement unit by default: Andreas Müller
04:14 PM bug #9124: Altitude feature should have [m] as measurement unit by default: I expect this to work so I close the ticket. Andreas Müller
03:53 PM bug #9124: Altitude feature should have [m] as measurement unit by default: I tested on test and integration. The result looks fine. But we should also run on production once after the release ... Andreas Müller
04:13 PM task #9062 (Closed): Remove StatisticalMeasurementValue.value_old: Is fixed. Andreas Müller
04:11 PM task #9082 (Closed): Update script for old empty Partials handling: Andreas Müller
04:06 PM task #9094 (Closed): Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource: This is fixed Andreas Müller
04:00 PM task #9120: Update script for flowering period supports temporal data: ~~~sql
SELECT *
FROM DefinedTermBase dtb
WHERE dtb.supportedDataTypes LIKE '%#TED#%'
~~~ Andreas Müller
03:59 PM task #9120 (Closed): Update script for flowering period supports temporal data: This is fixed on test and integration databases. Andreas Müller
03:55 PM feature request #9121 (Closed): Add abbreviations to Feature: I think we can close this ticket. Looks like it works. We could test on production, but as it not really critical, th... Andreas Müller
03:50 PM bug #9267: No sec reference for move change Synonym to accepted Taxon: By the way, as the above action is a taxon split, in future there will be the need of more user interaction during th... Andreas Müller
03:42 PM bug #9267 (Feedback): No sec reference for move change Synonym to accepted Taxon: The above requirement works as expected but I do not fully agree to the requirement. I think we discussed this some t... Andreas Müller
02:01 PM feature request #9282: Add nomenclatural standing: This generally works and can be closed. A final update script still needs to run to change handling of nom. confus. a... Andreas Müller
01:57 PM feature request #4644 (New): json lib incorrectly serializes values containig the characters [, ], {, }: the above mentioned commit had to be reverted, so this issue is open again Andreas Kohlbecker
12:51 PM task #6591 (Closed): Use name used in source for original spelling: I think this works and can be closed. Andreas Müller
12:45 PM bug #8776 (New): Open issues for TermCollection.allowDuplicates handling in TaxEditor: Now the duplicates are checked on editor side and the message dialog shows which terms can not be added because they ... Katja Luther
11:38 AM bug #8776 (In Progress): Open issues for TermCollection.allowDuplicates handling in TaxEditor: Looks like this is partly fixed already (at least first part of first issue). As it is related to #8774 we should try... Andreas Müller
12:36 PM task #5856 (Rejected): [DISCUSS] Consider implemeting additional name relationships: So I mixed it up. This is on implementation in **dataportal**.
However, I think if name relationships are all show... Andreas Müller
12:21 PM task #3967 (Duplicate): Rethink original spelling strategy: This is a duplicate for #6591 Andreas Müller
12:06 PM feature request #9194 (Closed): Make RelationshipBase and NomenclaturalStatus reference OriginalSource: This is fixed. I checked the update script result against some test databases. Looks ok (for hybrid relations I did n... Andreas Müller
11:35 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Andreas Müller wrote:
> > The duplicate check should be done when adding the term not only ... Andreas Müller
11:22 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Andreas Müller wrote:
> > It is now possible to open 2 term tree Editors of the same type. ... Katja Luther
11:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Andreas Müller wrote:
> > Can we still Change the menu that way that we have Vocabularies i... Katja Luther
11:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Similar to the duplicates issue a term tree can be "flat". In this case adding a child to a ... Katja Luther
09:23 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Similar to the duplicates issue a term tree can be "flat". In this case adding a child to a term node should not be a... Andreas Müller
09:20 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> The duplicate check should be done when adding the term not only when saving it.
>
> this... Andreas Müller
09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy: There is still camle case in the label
![](picture539-1.png) Andreas Müller
08:52 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named... Andreas Müller
08:51 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an... Andreas Müller
08:47 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> It is now possible to open 2 term tree Editors of the same type. This is not wanted as a ter... Andreas Müller
08:38 AM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy: When moving a term up in feature tree via d&d
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem... Andreas Müller
11:12 AM feature request #9307 (Closed): Preferences for display of termtrees and entries: Andreas Müller
09:11 AM feature request #9307: Preferences for display of termtrees and entries: I guess this is for final review again. Andreas Müller
08:45 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries: Applied in changeset commit:taxeditor|9d517193984ee588d4ee88484ddc791710ce613c. Katja Luther
08:41 AM feature request #9307: Preferences for display of termtrees and entries: The functionality itself works. So, when the label is fixed, the ticket can be closed. Andreas Müller
08:32 AM feature request #9307 (Feedback): Preferences for display of termtrees and entries: The label still does not work
![](picture921-1.png) Andreas Müller
09:09 AM feature request #9287: Show term details in details view of term tree editor: Maybe we do not need to load the data with the initial DTO but asynchronously when ever it is needed. Just in case lo... Andreas Müller
08:55 AM feature request #9287: Show term details in details view of term tree editor: As this is related to #8774 I move it to current milestone as we should implement it soon (might also be an interesti... Andreas Müller
08:20 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects: Another layout issue somehow related: In external link, can we move the URI to the top and the type below URI? URI is... Andreas Müller
08:17 AM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects: But it should be adapted for all single sources like for TaxonNode.source. So indentation is needed everywhere, excep... Andreas Müller
08:14 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects: Yes, this looks much better. Only for nom. sources "more" is still bold. Can you adapt it there, too? Andreas Müller

11/26/2020

02:27 PM bug #9334 (New): Show error message when feature tree can not be shown because of dirty data: see #8774#note-32 Katja Luther
02:22 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy: For the missing feedback I create a new ticket, can we close this ticket? Katja Luther
02:21 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects: I think this is fixed now. Please review. Katja Luther
12:54 PM task #9266 (Closed): Remove protologue section from TaxEditor: Andreas Müller
09:32 AM task #9266 (Resolved): Remove protologue section from TaxEditor: Katja Luther
09:31 AM task #9266: Remove protologue section from TaxEditor: Andreas Müller wrote:
> Katja Luther wrote:
> > >
> > > Maybe we could even use the above preference to show or n... Katja Luther
10:21 AM feature request #9225 (Closed): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass: yes I also think that this ticket can be closed.
There might be still some cases in which LIEs might pop up but thes... Andreas Kohlbecker
09:31 AM feature request #9333 (New): Preference for display of protologue section in nomenclatural source section: from #9266:
The protologue section should also be removed from local and DB preferences I guess as it probably has... Katja Luther

11/25/2020

10:48 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Caryophallales: so can we close the ticket? Andreas Müller
10:46 PM feature request #9192 (Feedback): Layout issues for source in taxonnode details: Are these still open issues. To me it looks like most of it is solved somehow. But maybe I do not understand some of ... Andreas Müller
10:40 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects: ... for TaxonNodes.source we should keep indentation of "more" as it is followed by "Related persons" Andreas Müller
10:36 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced objects: Can we adapt single source layout according to nomenclatural source layout?
So we
* move External Link up and... Andreas Müller
09:54 PM feature request #9332 (Closed): Rename TypeDesignationBase.source to .designationSource: as simple "source" creates confusion as there are also the general sources attached to TypeDesignationBase. Andreas Müller
09:37 PM feature request #6581 (Closed): Make all microreferenced references OriginalSources: I think we can close this ticket now. Please reopen if you think there is still something open that is not yet handle... Andreas Müller
09:32 PM feature request #9331 (Closed): Distinguish DescriptionElementSource and NamedSource: ... NamedSource is now used in more cases and DescriptionElementSource should have a backlink to DescriptionElement
... Andreas Müller
09:24 PM task #9330 (Closed): Remove "NomenclaturalSource" from OriginalSourceType: As nomenclatural sources now have there own subclass PrimaryTaxonomicSource is enough for nomenclatural sources.
H... Andreas Müller
08:59 PM bug #6623 (Resolved): formatter for bibliografic citations with citationDetail: This should be something like DefaultReferenceCacheStrategy.getNomenclaturalCitation(Reference, String) but for bibli... Andreas Müller
08:16 PM feature request #9194 (Resolved): Make RelationshipBase and NomenclaturalStatus reference OriginalSource: I guess this is fixed as we use it already in TaxEditor Andreas Müller
08:10 PM feature request #9329 (Closed): Implement sec reference as original source in dataportal: This is a remaining issue from #9222 as model change is required first.
Also have in mind to adapt jsonConfigura... Andreas Müller
08:08 PM feature request #9328 (Closed): Adapt Editor to switch to originalSource for taxon secundum: This is the remaining issue from #9199.
Requires model implementation #9327 Andreas Müller
08:07 PM feature request #9327 (Closed): Make taxon secundum reference an original source: copied from #6581 Andreas Müller
08:04 PM feature request #9326: Show all authors in bibliographic references: The third screen shot shows a (new?) truncation of a long title. Looks not bad but is not correct. In this case Fragi... Wolf-Henning Kusber
08:02 PM feature request #9326 (Closed): Show all authors in bibliographic references: In PhycoBank it is necessary to show a complete reference including all bibliographical authors. This is also relevan... Wolf-Henning Kusber
07:29 PM feature request #9325 (Duplicate): Enable section in specimen type designation: The idea is to select or create a section for the typification (of the name we are coming from). Might be necessary f... Wolf-Henning Kusber
07:15 PM feature request #9324 (Closed): Enable designation reference editing in name type designation: Main issues:
6: enable to select an available section (new names) or create a new section (for e.g. lecto- or n... Wolf-Henning Kusber
06:35 PM bug #9322: Remove invalid designation taxon relationship: Find possible cases:
~~~sql
SELECT tr.id, tb1.titleCache fromx , tb2.titleCache tox, tr.*
FROM TaxonRelationship... Andreas Müller
02:38 PM bug #9322 (Closed): Remove invalid designation taxon relationship: Invalid designations are simply names which are not valid and therefore are called "designations" only not "names".
... Andreas Müller
05:08 PM feature request #4644 (Rejected): json lib incorrectly serializes values containig the characters [, ], {, }: this is no longer relevant since we no longer need to get the microreference separately commit:aa06c1f1a2
The hack... Andreas Kohlbecker
03:16 PM task #9222 (Resolved): Adapt dataportal to switch to originalSource for remaining single sourced classes: this should be mainly fixed, only needs final review Andreas Kohlbecker
03:06 PM task #8275 (Worksforme): [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.: AM:
Es gibt noch das Ticket #8275 , welches ich erstellt habe, als ich noch nicht so genau wußte, was es mit der A... Andreas Müller
03:04 PM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.: Andreas Müller wrote:
> All invalid names (term ids may need to be adapted)
I think this is handled sufficiently ... Andreas Müller
03:03 PM task #9265 (Resolved): Adapt dataportal to new protologue handling: Andreas Kohlbecker
03:03 PM task #9265: Adapt dataportal to new protologue handling: new ticket for discussion on display of ExternalLink.description: #9323
Andreas Kohlbecker
12:25 PM task #9265: Adapt dataportal to new protologue handling: Andreas Kohlbecker wrote:
> this is basically implemented, tests are pending.
>
> One question in advance: Extern... Andreas Müller
03:01 PM task #9323 (New): discuss display of ExternalLink.description: ExternalLink has the property description, how should this be handled in case of the protologues? I suggest using foo... Andreas Kohlbecker
02:42 PM task #8055 (Rejected): Correct formatting for invalid designations: As Invalid Designation relationships are not supported anymore (as they are incorrect, #9322) this ticket can be clos... Andreas Müller
01:22 PM feature request #9321 (New): Make availability of pro-parte synonyms configurable: Mostly pro parte synonyms should not be created in TaxEditor, therefore it should be configurable whether the menu it... Katja Luther
12:20 PM bug #9241: replace/adapt descriptionPart in render templated: I guess this should be done shortly after the current release so I put it to the current milestone for now so we do n... Andreas Müller
12:18 PM feature request #9225: Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass: Andreas Müller wrote:
> I think the vaadin test are now fixed (?). So can we close this ticket?
?? Andreas Müller
12:17 PM task #9266: Remove protologue section from TaxEditor: Katja Luther wrote:
> >
> > Maybe we could even use the above preference to show or not show the external link sec... Andreas Müller
12:12 PM feature request #9320 (In Progress): Move additional publication information to nomenclatural source: copied from #6589 (see discussion starting at #6589#note-24)
Currently it is stored as name description but the da... Andreas Müller
12:04 PM feature request #6589: Handle protologue as original source with URI link: Andreas Kohlbecker wrote:
> Interesting, that the UUID is different from that in the data portal code ('cb2eab09-6d9... Andreas Müller
10:58 AM feature request #6589: Handle protologue as original source with URI link: also in
* cdm_production_cichorieae
* cdm_production_euromed
* cdm_production_euromed_caucasus
* cdm_productio... Andreas Kohlbecker
10:44 AM feature request #6589: Handle protologue as original source with URI link: Interesting, that the UUID is different from that in the data portal code ('cb2eab09-6d9d-4e43-8ad2-873f23400930').
... Andreas Kohlbecker

11/24/2020

10:36 PM feature request #6589: Handle protologue as original source with URI link: Additional Publications do definetely exist, e.g. in E+M or caryo_spp
~~~sql
SELECT db.DTYPE, db.id, feature.titl... Andreas Müller
09:54 PM feature request #6589: Handle protologue as original source with URI link: I found a special case in the data portal code for the feature:
~~~
UUID_ADDITIONAL_PUBLICATION = 'cb2eab09-6d9d-... Andreas Kohlbecker
10:34 PM task #9265 (Feedback): Adapt dataportal to new protologue handling: this is basically implemented, tests are pending.
One question in advance: ExternalLink has the property `descript... Andreas Kohlbecker
10:12 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable: Reference selectable for basionym, replaced synonym, and validation. The ticket can be closed. Wolf-Henning Kusber
05:18 PM bug #9318 (Resolved): TaxonNameEditor: nomenclatural reference no longer selectable: this should be fixed now, can you please review? Andreas Kohlbecker
05:17 PM bug #9318 (In Progress): TaxonNameEditor: nomenclatural reference no longer selectable: Andreas Kohlbecker
05:13 PM bug #9318 (Duplicate): TaxonNameEditor: nomenclatural reference no longer selectable: Andreas Kohlbecker
05:10 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable: this is actually a bug introduced with #9229 - implementation was incomplete.
Andreas Kohlbecker
04:49 PM bug #9318 (Closed): TaxonNameEditor: nomenclatural reference no longer selectable: after the changes that turn the nomenclatural reference into a `DescriptionElementSource` (#9225, #6581) the nomencla... Andreas Kohlbecker
07:04 PM task #9319 (New): adapt name render templates to new nomenclatural source which also contain protologues as external links: 1. The render templates still refer to the old model in which protologues have been handled via name descriptions.
2... Andreas Kohlbecker
05:12 PM feature request #9229 (In Progress): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName: reopening since this implementation is incomplete, see #9318 Andreas Kohlbecker
02:39 PM feature request #8769: Biocase import configuration should be shown when clicking on import button: the wizard is structured in the way described above. Katja Luther
12:55 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking on import button: Katja Luther
12:55 PM feature request #8769: Biocase import configuration should be shown when clicking on import button: now the configuration dialog is opened with every click on import and the classifiction is added to the config wizard. Katja Luther
10:37 AM feature request #5795: [DISCUSS] Do we need comb. ined. as a nomenclatural status?: The status has been implemented a couple of years ago so Andreas Müller

11/23/2020

08:24 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor: As this is a milestone interal ticket only I remove the target version Andreas Müller
01:04 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor: confirmed! the commit:374e76ca85 for #6581 fixes this issue Andreas Kohlbecker
04:06 PM task #9265 (In Progress): Adapt dataportal to new protologue handling: There is no specific web service for protologues so only the dataportal needs to be adapted. Andreas Kohlbecker
02:10 PM bug #8833 (Duplicate): distribution editor: Exception when filtering by taxon: tested at the example of http://test.e-taxonomy.eu/cdmserver/cichorieae/app/distribution#!distGrid
could not repro... Andreas Kohlbecker
01:17 PM bug #9317 (In Progress): Handle NameTypeDesignations on name basis not on homotypic group basis in outputs: WGB:
Bei Gattungen und infragenerischen Rangstufen, die auf anderen Namen basieren wird [...] eine Kombination (Ar... Andreas Müller
09:56 AM feature request #9316: Add preference to define number of initialy shown elements in drop down menus: As such dropdowns exist at many places we should have a predicate like "number of rows in dropdown" and define which ... Andreas Müller
08:54 AM feature request #9316 (New): Add preference to define number of initialy shown elements in drop down menus: mail ERS:
Bei der Auswahl des Distribution Status im Details View habe ich ein scroll-down-Menü, welches mir aber ... Katja Luther
09:44 AM bug #6757 (Worksforme): AbcdImportWizard has all configurator flags set to false: no, this is fixed in the meantime Katja Luther

11/20/2020

11:09 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess: Andreas Müller
11:08 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet: Works as expected Andreas Müller
11:07 PM feature request #9299 (Feedback): Add LSID to author and reference details: In general this is fixed.
Only issues:
* can we move URI above DOI and LSID in Reference Details View.
* can ... Andreas Müller
11:03 PM bug #6947 (Closed): Incorrect error for LSID field: This works as expected Andreas Müller
10:58 PM feature request #9297 (Closed): Improve name of zip file for cdmLightExport: This is fully fixed Andreas Müller
10:47 PM feature request #9282 (Resolved): Add nomenclatural standing: still need to update in cdmlight Andreas Müller
07:07 PM feature request #9282 (In Progress): Add nomenclatural standing: Andreas Müller
10:44 PM bug #9312 (Resolved): NullPointerException (NPE) in TaxonNamePopupEditor: This should be fixed with the current update script. You need to reinstall a version prior to 5.18.0 and run the upda... Andreas Müller
03:34 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor: this seems to be due to a problem in the model upgrade script which misses to handle NomeclaturalSources correctly an... Andreas Kohlbecker
01:51 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor: beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s... Andreas Kohlbecker
10:07 PM feature request #5795 (Resolved): [DISCUSS] Do we need comb. ined. as a nomenclatural status?: Andreas Müller
06:20 PM task #9315 (Closed): Remove old single source citation and microCitation columns: Include all single sources from #6581
For nomenclatural source it may look like
~~~sql
//#9315 remove ... Andreas Müller
06:17 PM task #9314 (New): Swap 'is conserved against': We may think about swapping the direction of "is conserved against" .
This might be an advantage when evaluating t... Andreas Müller
06:08 PM bug #8859 (Closed): RegistrationItemNameAndTypeButtons invalid regex pattern: Andreas Kohlbecker
06:08 PM bug #8859 (Resolved): RegistrationItemNameAndTypeButtons invalid regex pattern: Applied in changeset commit:cdm-vaadin|2deb1814c68bd161651f888988f74b04e659a928. Andreas Kohlbecker
05:08 PM feature request #9224 (Closed): openlayers map handles server error per layer and presents a user message: fully solved Andreas Kohlbecker
05:01 PM task #6591 (Resolved): Use name used in source for original spelling: Andreas Müller
04:48 PM bug #9313 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor: please review once #9312 is also solved - needs prior communication with the dev team to check that the data base is ... Andreas Kohlbecker
01:58 PM bug #9313 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor: beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s... Andreas Kohlbecker
04:45 PM feature request #9272 (Resolved): Add missing nomenclatural status: Finally we added
protected
in sched.
pro syn.
orth. var. (as status)
comb. ined. Andreas Müller
03:01 PM bug #9311 (In Progress): Update some (abbrev) labels for nomenclatural status types: Andreas Müller
12:40 PM bug #9311 (Closed): Update some (abbrev) labels for nomenclatural status types: opus. utique oppr. => op. utique oppr.
nom. orth. cons. => orth. cons.
nom. orth. cons. prop. => orth. cons. prop.
... Andreas Müller
01:05 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page: Andreas Kohlbecker
09:34 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page: Gomphonemopsis ligowskii is published and has a holotype.
I inserted a unpublished test reference Kusber in Zeitschr... Wolf-Henning Kusber
09:17 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page: Checked this example. The issue is perfectly solved. Before we close the ticket, I want to find an example with mixed... Wolf-Henning Kusber
11:51 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries: please review Katja Luther
08:40 AM bug #9310 (New): Deleting a taxon with all synonyms fails for the basionym: The synonym set as basionym is not deleted because the check for basionym prevents the delete. There should be anothe... Katja Luther
08:32 AM feature request #7797: Second nomenclatural reference: AM:
... Eine Idee wäre, den Text dieser zweiten Referenzen statt in die NameFacts in die neue Nomenclatural Sourc... Andreas Müller

11/19/2020

05:14 PM bug #9184 (Closed): WSOD in advanced search cdm_dataportal/search: After re-indexing the problem does no longer occur.
discrepancies of the search index with the database could be m... Andreas Kohlbecker
01:38 PM bug #9184: WSOD in advanced search cdm_dataportal/search: This problems seems to be caused by search indices which are not in sync with the cdm db.
The data portal now igno... Andreas Kohlbecker
03:38 PM feature request #9309: Improve handling of specimen without titlecache in cdmLight: The problem here is not primarily a cdmlight issue but an issue of missing title cache strategy (formatter) for Deriv... Andreas Müller
01:55 PM feature request #9309 (New): Improve handling of specimen without titlecache in cdmLight: copied from #9262:
Ausgabe -title cache generation not implemented-. Das kommt, soweit ich sehe, nur bei specimens... Katja Luther
02:01 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects: This is fixed for all sources listed above, for sec reference I create a new ticket or we create a new one when the s... Katja Luther
01:58 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Caryophallales: all issues are implemented except the specimen without titleCache, therefore a new ticket exist (#9309) Katja Luther
01:56 PM feature request #9262 (Resolved): Several open issues for cdmlight export related to Cactaceae and other Caryophallales: Katja Luther
12:15 PM task #9266: Remove protologue section from TaxEditor: Andreas Müller wrote:
> The protologue section should also be removed from local and DB preferences I guess as it pr... Katja Luther
12:11 PM feature request #9297 (Resolved): Improve name of zip file for cdmLightExport: please review Katja Luther
12:10 PM feature request #9299 (Resolved): Add LSID to author and reference details: please review Katja Luther

11/14/2020

08:34 PM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view: Please be aware that we do have a predicate for these attributes already. Better would be to implement the specific n... Andreas Müller
08:29 PM bug #8984: Registration search result list: Format display of two type specimens: At least the kommata handling might be fixed by implementations from #9279, but not sure Andreas Müller
08:15 PM task #9300: Name Page: harmonize media specimen lectotype representations: Andreas Kohlbecker wrote:
> Since the Citation part will end with a dot character, is seems incorrect to write "desig... Andreas Müller
08:05 PM bug #9302: Phycobank related issues for TypeDesignation formatting: AM:
ich habe, wie besprochen versucht den Punkt
"The search result in phycobank currently includes citation inf... Andreas Müller
07:14 PM bug #9302: Phycobank related issues for TypeDesignation formatting: AM: Bei der Diskussion ums Typusmodul vor ca. 2 Jahren hatten wir diskutiert und später auch implementiert, dass es 2... Andreas Müller
07:12 PM bug #9302: Phycobank related issues for TypeDesignation formatting: AM:
Bisher war gewünscht, Quellen als Kurzzitat mit „Autor (Jahr)“ anzugeben, was sowohl für die designated by Que... Andreas Müller
07:10 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting: Andreas Müller
05:05 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting: In the Phycobank context a couple of issues for type formatting have been found, after TypeDesginationSetManager has ... Andreas Müller
07:17 PM bug #9303 (New): [DISCUSS+IMPLEMENT] Make type designation micro references for non-lectotypes editable in TaxEditor: AM:
Bei der Diskussion ums Typusmodul wurde damals beschlossen, dass wir lediglich bei Lecto-, Epi- und Neotypen u... Andreas Müller
12:36 AM feature request #9299: Add LSID to author and reference details: As far as I understand WGB this is a functionality that is needed soon. As to me it sounds like easy to implement I s... Andreas Müller
12:34 AM bug #6947: Incorrect error for LSID field: I guess this is for review ... Andreas Müller

11/13/2020

06:10 PM feature request #9301 (Closed): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail: for all TypeDesignations where `typeStatus.hasDesignationSource() == true` field for citation and citationDetail need... Andreas Kohlbecker
05:41 PM feature request #8308 (Feedback): Extend specimen type designation editor: I can't see that there is anything missing:
type status:
![](picture825-1.png)
image references representi... Andreas Kohlbecker
04:36 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails: the Excel file belongs to the other ticket - cleaning up here .... Andreas Kohlbecker
04:35 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default: Update to the Excel file.
Now the reference type is also shown.
"Irregular" Reference Types are highlighted. Andreas Kohlbecker
03:13 PM task #9300 (Feedback): Name Page: harmonize media specimen lectotype representations: Since the Citation part will end with a dot character, is seems incorrect to write "designated by", it better should ... Andreas Kohlbecker
03:10 PM task #9300 (In Progress): Name Page: harmonize media specimen lectotype representations: The name *Heterocapsa triquetra* f. *apiculata* Er.Lindem. has a media specimen as lectotype.
* The "designated ... Andreas Kohlbecker
01:39 PM bug #6947 (Resolved): Incorrect error for LSID field: Applied in changeset commit:taxeditor|0faab9c0c0eae654583982c6f067e89851f758ee. Katja Luther
11:09 AM feature request #9299 (Closed): Add LSID to author and reference details: Katja Luther
11:04 AM feature request #9298 (New): Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view: IDInSource and IDNamespace are not needed for nomenclatural source therefore the display should be handled by a prefe... Katja Luther
10:42 AM feature request #9297 (Closed): Improve name of zip file for cdmLightExport: The zip file created by the cdmLight export should contain more informations about the data.
For example:
{TaxonN... Katja Luther
10:11 AM feature request #9296 (New): Preference to show/not show infrageneric epithet for species: ERS:
Eingabe eines name in source: im Formular „New Scientific Name“ gibt es einen bug: das scroll-down-Menü für „Ra... Katja Luther
10:09 AM feature request #9295 (New): Preference to set default reference type for new references: ERS:
Bei der Eingabe einer neuen Referenz steht der „Reference Type“ standardmäßig auf „Generic“. Der häufigste Fall... Katja Luther
10:07 AM feature request #9294 (New): New person dialog with protected titleCache: ERS:
Wenn ich im Laufe der Eingabe einer neuen Referenz einen neuen Autor eingeben muss, öffnet sich im Dialogfeld „... Katja Luther
09:06 AM feature request #9262 (In Progress): Several open issues for cdmlight export related to Cactaceae and other Caryophallales: Katja Luther
08:58 AM feature request #7700 (Closed): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport: I think we can close this ticket as there is kind of a follow up ticket with #9279 Andreas Müller

11/12/2020

04:02 PM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor: no more problems Andreas Kohlbecker
03:23 PM bug #9289: LazyInitializationException (LIE) in NameTypeDesignationEditor: fixed by commit:cdm-vaadin|84760d27
Andreas Kohlbecker
03:54 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs: Andreas Kohlbecker
03:52 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs: this ticket is either completed or open tasks are copied to new tickets, so it can be closed Andreas Kohlbecker
03:50 PM task #9293 (New): Use use DTO for Set<IdentifiableSource> sources in SpecimenOrObservationBaseDTO: copied from #9252 Andreas Kohlbecker

11/11/2020

12:28 PM feature request #9292 (New): find by name parts search implemented: Implement a search similar to the `TaxonListController.doFindByNamePart()` function which allows for filtering names ... Andreas Kohlbecker
11:34 AM bug #8592: consider renaming menu entry General->Switch User: Currently it is not wanted that users connect to another db as this does not work correctly due to static term proble... Andreas Müller
08:59 AM discussion #7917: Revise ReferenceSystemTerms: Do you really think that a measurement method is the same as the mathematical model that is needed to make sense of t... Andreas Kohlbecker
08:24 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Katja Luther wrote:
> > ...
> > This is caused by dirty data, I cleaned up the database, n... Katja Luther

11/10/2020

05:53 PM discussion #7917: Revise ReferenceSystemTerms: Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> > > So you are planning to use the r... Andreas Kohlbecker
05:51 PM discussion #7917: Revise ReferenceSystemTerms: Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > So you are planning to use the reference system for computati... Andreas Müller
11:07 AM discussion #7917: Revise ReferenceSystemTerms: Andreas Müller wrote:
> So you are planning to use the reference system for computations in the near future?
Plac... Andreas Kohlbecker
09:44 AM discussion #7917: Revise ReferenceSystemTerms: So you are planning to use the reference system for computations in the near future? Andreas Müller
08:52 AM discussion #7917: Revise ReferenceSystemTerms: BTW: the CRS for GPS is WGS 84
For solving the the current misconception in the model we need to distinguish the *... Andreas Kohlbecker
05:04 PM task #9291 (Closed): Clear all unnecesary TypeDesignation.citation entities and citationDetails: **This ticket should be solved after #9290 is being released and deployed to phycobank**
This is the query to whic... Andreas Kohlbecker
04:59 PM bug #9290 (Closed): stop setting Registration.citation as citation for TypeDesignations in all type editors by default: As shown in the analysis ( attachment:"TaxonName and Typedesignation citations unequal_diff.xlsx" ) using the `Regist... Andreas Kohlbecker
12:19 PM bug #9286 (Resolved): Re-connect and change user should be disabled if no datasource is connected yet: Applied in changeset commit:taxeditor|cea74dc3dd7328308f0fda121d2ccc5b7246c9a8. Katja Luther
11:34 AM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor: Buryatia belyaevae Kulikovskiy, Metzeltin & Lange-Bert. name type for Buryatia belyaevae Kulikovskiy, Metzeltin & Lan... Andreas Kohlbecker
09:43 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Katja Luther wrote:
> ...
> This is caused by dirty data, I cleaned up the database, now the feature trees and the ... Andreas Müller
09:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> adding a child (which was a duplicate but the tree did not allow duplicates, don't know if t... Katja Luther
09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an... Katja Luther

11/09/2020

03:39 PM bug #8774: Reimplement term tree editors to implement the general save strategy: Unordered trees should preferably be ordered alphabetically by label or idInVoc or whatever the first part of the use... Andreas Müller
03:29 PM bug #8774: Reimplement term tree editors to implement the general save strategy: When adding/removing terms the tree should stay expanded. Currently it collapses and you have to reopen it. Best woul... Andreas Müller
03:27 PM bug #8774: Reimplement term tree editors to implement the general save strategy: ~~The duplicate check should be done when adding the term not only when saving it.~~
this is fixed. Andreas Müller
03:22 PM bug #8774: Reimplement term tree editors to implement the general save strategy: adding a child (which was a duplicate but the tree did not allow duplicates, don't know if this is relevant):
~~~
... Andreas Müller
03:13 PM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t... Andreas Müller
03:12 PM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t... Andreas Müller
03:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy: ~~Changing the name of a vocabulary is not possible. The changes neither show up in the term tree editor nor do they ... Andreas Müller
02:52 PM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an... Katja Luther
02:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Can we show the details of a term anyway even if it is not editable in the term tree editor.... Katja Luther
02:44 PM bug #8774: Reimplement term tree editors to implement the general save strategy: Can we show the details of a term anyway even if it is not editable in the term tree editor. This is because the pure... Andreas Müller
02:34 PM bug #8774: Reimplement term tree editors to implement the general save strategy: Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named Area", "Others" and then... Andreas Müller
02:31 PM bug #8774: Reimplement term tree editors to implement the general save strategy: It is now possible to open 2 term tree Editors of the same type. This is not wanted as a term tree editor always edit... Andreas Müller
02:28 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy: Trying to open the feature tree editor opened it in the buttom panel and no tree appeared and no conext menu existed ... Andreas Müller
02:25 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy: Andreas Müller wrote:
> Drag&drop still seems to work like in the old version with no dirty flag but immediate save ... Andreas Müller
02:07 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy: ~~Drag&drop still seems to work like in the old version with no dirty flag but immediate save of change.~~ Andreas Müller
03:16 PM feature request #9288 (Closed): Add symbols for flags in use for term trees in term tree editor: The flags are "allow duplicates", "order relevant" and "is flat".
As long as we do not have better symbols we coul... Andreas Müller
02:49 PM feature request #9287 (Closed): Show term details in details view of term tree editor: From ticket #8774:
Can we show the details of a term anyway even if it is not editable in the term tree editor. Th... Katja Luther
02:12 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet: Currently choosing the re-connect leads to a NPE Andreas Müller
02:06 PM discussion #7917: Revise ReferenceSystemTerms: I remember the outcome differently.
> conglomerate of different types of possibilities to define what has been use... Andreas Kohlbecker
01:33 PM discussion #7917: Revise ReferenceSystemTerms: We had discussed this issue some years ago and as far as I remember the result was, that the term ReferenceSystem mig... Andreas Müller
01:44 PM feature request #8402: ordering typedesignations in name and taxon page: follow up tasks are copied to #9283, #9284, #9285 Andreas Kohlbecker
01:43 PM task #9285 (New): apply the order of the chosen TermTrees to the typedesignations in name and taxon page: This should preferably implemented by adding a query parameter to the webservice delivering the typedesignations.
... Andreas Kohlbecker
01:40 PM feature request #9284 (New): Admin UI to define the TermTrees as sort order preset: this is required at least for the order of typedesignations in name and taxon page, see #8402 Andreas Kohlbecker
01:37 PM task #9283 (New): Webservice for TermTrees implemented: this webservice may be similar to the vocabulary web service.
It is important that the order of terms is retained Andreas Kohlbecker
01:23 PM bug #9215 (Closed): Drop down for empty rank does not work: This seems to be fully fixed. Andreas Müller
01:15 PM task #9266 (Feedback): Remove protologue section from TaxEditor: The protologue section should also be removed from local and DB preferences I guess as it probably has no effect to u... Andreas Müller

11/06/2020

05:13 PM feature request #8402: ordering typedesignations in name and taxon page: The sort order should follow the order of the type designation status terms either of that in the vocabulary or in a ... Andreas Kohlbecker
05:12 PM task #9266 (Resolved): Remove protologue section from TaxEditor: The protologue section is removed/commented, please review afterwards I will remove the code completely. Katja Luther
03:59 PM feature request #9282 (Closed): Add nomenclatural standing: According to #9272 there are 4 classes of nomenclatural standing. These should be stored together with the accordings... Andreas Müller
01:22 PM feature request #9272: Add missing nomenclatural status: The situation has changed. Later isonym already exists as name relationship, not as status. At the same time there ar... Andreas Müller
01:06 PM feature request #9279: Improve type designation formatting and TypeDesignationSetManager: An example for unparsed specimen from Cactaceae: Selenicereus anthonyanus (Alexander) D.R.Hunt
Resulting in:
 –... Andreas Müller
12:16 PM feature request #9279 (In Progress): Improve type designation formatting and TypeDesignationSetManager: Andreas Müller
12:05 PM bug #9281 (Closed): Set basionym not available for heterotypic synonyms after drag & drop: mail ERS:
beim Zusammenstellen von Synonymen in einer homotypischen Gruppe im Freitext-Editor ist es anschließend ... Katja Luther
10:46 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy: all termtree editors are now switched to dtos. please review. Katja Luther

11/05/2020

05:18 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel(): The property name IKeyTerm.message is misleading and confusing it should be renamed to label
----
From email co... Andreas Kohlbecker
04:04 PM report #8177 (Worksforme): Discuss: How to add originals of a type specimen: We concluded that adding of intermediate originals to a specimen is a special case for phycobank. This usecase in not... Andreas Kohlbecker
02:08 PM feature request #9279 (Closed): Improve type designation formatting and TypeDesignationSetManager: these are open issues from #7700 and general issues
Some issues are
* parameterize formatting (with citation, w... Andreas Müller
09:58 AM feature request #9277: User rights for name, name type, and specimen type notes: Submitters and curator(s) should have the same rights to create notes.
except for the status of the registrations:... Wolf-Henning Kusber
09:23 AM feature request #9277 (New): User rights for name, name type, and specimen type notes: Submitters and curator(s) should have the same rights to create notes.
Name editor:
Technical (currently enabled ... Wolf-Henning Kusber
09:47 AM feature request #9278 (New): Notes for references: Currently the curator has the option to fill
Editorial notes (for publication; not implemented yet)
Technical notes... Wolf-Henning Kusber

11/04/2020

12:34 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs: tasks regarding DerivateDataDTO copied to other ticket Andreas Kohlbecker
12:31 PM task #9276 (New): improve DerivateDataDTO: copied from #9252
DerivateDataDTO needs harmonization:
* find better class name
* Use `List<MediaDTO>` instead... Andreas Kohlbecker
12:08 PM task #9268: Check cdm for GC G1 humongous objects problem: Andreas Kohlbecker wrote:
> this finding can be especially relevant for imports and exports, therefore we should exa... Katja Luther
12:00 PM task #9268 (Feedback): Check cdm for GC G1 humongous objects problem: this finding can be especially relevant for imports and exports, therefore we should examine I/O functionalities whic... Andreas Kohlbecker
11:29 AM task #9268: Check cdm for GC G1 humongous objects problem: further results from the test server after startup and running the Data Portal Cacher for E+M by 8,5% (attachment:g1-... Andreas Kohlbecker
10:47 AM task #9275 (New): Cleanup apache configuration from "AllowEncodedSlashes On": see #7563 for servers which need to be cleaned Andreas Kohlbecker
10:42 AM bug #9240 (Closed): nomenclatural status missing in name and registration page: Andreas Kohlbecker

11/03/2020

06:30 PM task #9268 (In Progress): Check cdm for GC G1 humongous objects problem: Andreas Kohlbecker
06:30 PM task #9268: Check cdm for GC G1 humongous objects problem: I enabled G1 GC logging as described in https://plumbr.io/handbook/gc-tuning-in-practice/other-examples/humongous-all... Andreas Kohlbecker
05:45 PM feature request #9134: Rule based creation of additional media representations "on the fly": I improved the regex in the DefaultMediaTransformations for digilib, this is the new default:
~~~json
[ {
"sch... Andreas Kohlbecker
04:25 PM task #9132: Update cyprus images to Scaler default API and add thumbnails: Thumbnails have been removed from cyprus DB (also from AUD tables).
So the only open issue is now to update links ... Andreas Müller
01:59 PM task #9132: Update cyprus images to Scaler default API and add thumbnails: Removing thumbnails:
~~~sql
SELECT *
FROM MediaRepresentation mr
INNER JOIN MediaRepresentationPart mrp ON mrp.... Andreas Müller
02:02 PM feature request #9274 (New): Analyze where recalculating of taxon navigator is really necessary: mail AM:
Wenn der Navigator verlinkt ist, wird sehr viel Zeit damit verbracht, den Navigator nach vielen Aktionen ... Katja Luther
12:24 PM feature request #9273 (New): [DISCUSS] Unify Nomenclatural status and name relationships: Often these 2 represent the same. The unified class would be a relation which is either unary or binary.
Andreas Müller
11:48 AM bug #8751 (Rejected): Replace saveOrUpdate() in AbstractTermTreeEditor: Katja Luther
11:46 AM bug #8751 (Resolved): Replace saveOrUpdate() in AbstractTermTreeEditor: This is fixed by using dtos for the termtree editors. See #8774.
Maybe we should set the status to rejected becaus... Katja Luther
11:07 AM feature request #9272: Add missing nomenclatural status: We still need (Latin) abbreviations for these two status types. Andreas Müller
11:05 AM feature request #9272 (Closed): Add missing nomenclatural status: From the EDIT manual for nomenclatural status and name relationships.
Designations
* invalid names
* invali... Andreas Müller

11/02/2020

09:37 PM feature request #9271 (In Progress): Improve E+M dataportal performance: To fully release the E+M data portal which should try to improve the peformance to the performance difference between... Andreas Müller
08:46 PM feature request #3665 (In Progress): Further implementation of original spelling name caching: This has been mostly implemented in 4.7 and 4.8. Need to check if something is still open. Andreas Müller
08:36 PM bug #7781: original spelling is missing for accepted taxon in taxon page: As this is requested multiple times we should try to implement it in one of the next releases. Andreas Müller
08:35 PM feature request #9270: show original spelling on taxon page: This is probably a duplicate for #7781 Andreas Müller
08:28 PM feature request #9270 (Duplicate): show original spelling on taxon page: ERS:
Der Name Vulpia fontqueriana has original spelling Vulpia fontquerana.
Daher wird mir im Editor im Freitextb... Andreas Müller
02:31 PM feature request #9134: Rule based creation of additional media representations "on the fly": posting the SQL INSERT statement to add the default transformation to a DB:
~~~sql
INSERT INTO CdmPreference
(key_su... Andreas Kohlbecker
01:57 PM feature request #9134: Rule based creation of additional media representations "on the fly": Ok agreed, I am closing this ticket. Please open a new one for further discussion when needed. Andreas Kohlbecker
02:00 PM task #9269: discuss with the flora of greece people if the new image viewer is to be activated: I am assigning this ticket to you Andreas since you are the main contact for the FOG in the BDI group. Andreas Kohlbecker
01:59 PM task #9269 (New): discuss with the flora of greece people if the new image viewer is to be activated: please pass the ticket to me once we know the answer Andreas Kohlbecker
01:36 PM task #9268: Check cdm for GC G1 humongous objects problem: I can't see that we have objects of size in CDM real data Andreas Müller
01:16 PM task #9268 (New): Check cdm for GC G1 humongous objects problem: problems of the G1 when there are Objects >= 1MB in the heap:
https://dzone.com/articles/whats-wrong-with-big-ob... Andreas Kohlbecker
01:13 PM task #8865: more external-links to be implemented: Email von Stefan Dressler und marco schmidt Frankfurt and Eckhard
Euro+Med/IDs:
für die Verlinkung zu uns wäre ... Andreas Kohlbecker
09:17 AM bug #9267: No sec reference for move change Synonym to accepted Taxon: please review Katja Luther
09:15 AM bug #9267 (Resolved): No sec reference for move change Synonym to accepted Taxon: Applied in changeset commit:cdmlib|593c7701c265521b6e3701942e0f6c7756304963. Katja Luther
09:01 AM bug #9267 (Closed): No sec reference for move change Synonym to accepted Taxon: mail WGB:
mir ist aufgefallen, dass beim Umwandeln eines Synonyms in einen akzeptierten Namen dem neuen Taxon eine... Katja Luther
08:44 AM bug #9263 (Resolved): Unify case for type designation status: This has been fixed by using lower case for specimen type designations now.
This lead to test failures in TypeDesi... Andreas Müller

10/30/2020

02:03 PM feature request #6589 (Resolved): Handle protologue as original source with URI link: This is fixed now with model version 5.18.4.
However, #9266 and #9265 also need to be fixed before release Andreas Müller
02:01 PM task #9266 (Closed): Remove protologue section from TaxEditor: after protologues have been moved now to nomenclaturalSource.externalLink. Andreas Müller
09:23 AM feature request #9225 (Resolved): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass: I think the vaadin test are now fixed (?). So can we close this ticket? Andreas Müller

10/29/2020

03:55 PM task #9265 (Closed): Adapt dataportal to new protologue handling: Protologues are now handled as external links of the nomenclatural source (#6589). The dataportals (and maybe webserv... Andreas Müller
03:54 PM feature request #6589: Handle protologue as original source with URI link: SQL to find linking data to DescriptionBase holding the protologue image
~~~sql
SELECT n.titleCache
FROM TaxonN... Andreas Müller
03:54 PM feature request #6589: Handle protologue as original source with URI link: SQL to find linking data to TextData holding the protologue image
~~~sql
SELECT DO.sources_id -- DO.DescriptionEl... Andreas Müller
03:53 PM feature request #6589: Handle protologue as original source with URI link: ~~The following records (sources for textdata) should also be deleted from AUD tables in Cichorieae . All other DBs d... Andreas Müller

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