Activity
From 10/26/2020 to 11/24/2020
11/24/2020
- 11:04 PM Revision 1918f07a (cdmlib): ref #9279 fix TypedEntity for source
- 10:36 PM feature request #6589: Handle protologue as original source with URI link
- Additional Publications do definetely exist, e.g. in E+M or caryo_spp
~~~sql
SELECT db.DTYPE, db.id, feature.titl... - 09:54 PM feature request #6589: Handle protologue as original source with URI link
- I found a special case in the data portal code for the feature:
~~~
UUID_ADDITIONAL_PUBLICATION = 'cb2eab09-6d9d-... - 10:34 PM task #9265 (Feedback): Adapt dataportal to new protologue handling
- this is basically implemented, tests are pending.
One question in advance: ExternalLink has the property `descript... - 10:26 PM Revision df2b235a (cdm-dataportal): ref #9265 switching to NomenclaturalSource.links for protologues - comment
- 10:16 PM Revision f9b5740e (cdm-dataportal): ref #9265 switching to NomenclaturalSource.links for protologues
- 10:12 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable
- Reference selectable for basionym, replaced synonym, and validation. The ticket can be closed.
- 05:18 PM bug #9318 (Resolved): TaxonNameEditor: nomenclatural reference no longer selectable
- this should be fixed now, can you please review?
- 05:17 PM bug #9318 (In Progress): TaxonNameEditor: nomenclatural reference no longer selectable
- 05:13 PM bug #9318 (Duplicate): TaxonNameEditor: nomenclatural reference no longer selectable
- 05:10 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable
- this is actually a bug introduced with #9229 - implementation was incomplete.
- 04:49 PM bug #9318 (Closed): TaxonNameEditor: nomenclatural reference no longer selectable
- after the changes that turn the nomenclatural reference into a `DescriptionElementSource` (#9225, #6581) the nomencla...
- 09:58 PM Revision 27a6e8d7 (cdmlib): ref #9279 add TypedEntities to TypeDesignationDTO
- 09:57 PM Revision 2fb2834c (cdmlib): cleanup
- 09:45 PM Revision a0ab64df (cdm-dataportal): ref #9279 adapt orderdTypeDesig type in cdmdataportal
- 08:55 PM Revision d38359c9 (cdm-vaadin): ref #9279 fix type and improve generics for TypedEntityReference (vaadin, cont.)
- 08:51 PM Revision 47f6500b (cdmlib): ref #9279 use RegistrationDTO instead of TypedEntityReference for TypeDesignations
- 08:36 PM Revision 7f1705a9 (cdmlib): cleanup
- 07:30 PM Revision 6d344620 (cdmlib): ref #9279 fix make WorkingSet a Map again and cleanup
- 07:04 PM task #9319 (New): adapt name render templates to new nomenclatural source which also contain protologues as external links
- 1. The render templates still refer to the old model in which protologues have been handled via name descriptions.
2... - 06:56 PM Revision 32955f5b (cdmlib): ref #9279 make WorkingSet a Map again and fix typo in RegistrationDTO attribute and fix jsonConfigurations
- 06:23 PM Revision cbe1466f (cdm-vaadin): ref #9279 improve generics for TypedEntityReference (vaadin)
- 06:23 PM Revision de5e3f7c (cdm-vaadin): ref #9279 extract TypeDesignationWorkingSet as top level class and some cleanup (vaadin)
- 06:16 PM Revision c386f139 (cdmlib): ref #9279 improve generics for TypedEntityReference
- 05:31 PM Revision 7471539c (cdmlib): ref #9279 separate formatting from TypeDesignationSetManager and extract TypeDesignationWorkingSet as top level class and some cleanup
- 05:17 PM Revision c1c4b55f (cdm-vaadin): ref #9318 fixing problem with NomenclaturalSource selection in TaxonNameEditor
- 05:12 PM feature request #9229 (In Progress): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- reopening since this implementation is incomplete, see #9318
- 03:14 PM Revision a5a8be33 (taxeditor): ref #8769: move source ref to configuration wizard
- 03:00 PM Revision 842cd0b7 (cdmlib): cleanup
- 02:58 PM Revision 5c5865f6 (taxeditor): ref #8769: structure the configuration elements - add source
- 02:39 PM feature request #8769: Biocase import configuration should be shown when clicking on import button
- the wizard is structured in the way described above.
- 12:55 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking on import button
- 12:55 PM feature request #8769: Biocase import configuration should be shown when clicking on import button
- now the configuration dialog is opened with every click on import and the classifiction is added to the config wizard.
- 02:36 PM Revision a63e71bd (taxeditor): ref #8769: structure the configuration elements
- 02:35 PM Revision 5ca40190 (cdmlib): ref #9279 remove redundant typifiedNameRef (TypedEntityReference) and cleanup
- 12:57 PM Revision 19793be6 (cdmlib): cleanup
- 12:56 PM Revision f1145594 (cdmlib): ref #9282 adapt dataset.dtd to NomenclaturalStanding
- 12:23 PM Revision 7b5149a3 (cdmlib): preliminary fix compile error in SchemaUpdater_5185_5186
- 12:18 PM Revision 9d43b70b (cdmlib): cleanup
- 12:16 PM Revision c14761c5 (cdmlib): ref #9272 remove invalid state from nom. ambig. and nom. confus.
- 12:13 PM Revision 0edc55f4 (cdmlib): ref #9272, ref #5794 adapt taxon ordering to nomenclatural standing
- 12:13 PM Revision 1d9b1314 (cdmlib): cleanup
- 11:50 AM Revision e84897d0 (taxeditor): adapt biocase import views
- 11:44 AM Revision 3370888f (cdmlib): add termNodeDto to list of terms of termTreeDto
- 11:36 AM Revision 8ae425dd (cdmlib): add classification to config string
- 11:00 AM Revision d0b9755a (taxeditor): ref #9266: layout issues
- 10:37 AM feature request #5795: [DISCUSS] Do we need comb. ined. as a nomenclatural status?
- The status has been implemented a couple of years ago so
- 08:54 AM Revision 196b09e5 (taxeditor): ref #9266: remove more section in nomenclatural source and keep protologue label
- 08:38 AM Revision ccdf755b (taxeditor): remove max number of elements in combo boxes
11/23/2020
- 10:12 PM Revision 9e82c512 (cdmlib): ref #9279 remove redundant string and TaggedText computing and fix post separator for names type sets
- 10:10 PM Revision 88317626 (cdmlib): cleanup
- 09:14 PM Revision 317bee5c (cdmlib): cleanup
- 08:24 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
- As this is a milestone interal ticket only I remove the target version
- 01:04 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
- confirmed! the commit:374e76ca85 for #6581 fixes this issue
- 04:06 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
- There is no specific web service for protologues so only the dataportal needs to be adapted.
- 02:10 PM bug #8833 (Duplicate): distribution editor: Exception when filtering by taxon
- tested at the example of http://test.e-taxonomy.eu/cdmserver/cichorieae/app/distribution#!distGrid
could not repro... - 01:17 PM bug #9317 (New): Handle NameTypeDesignations on name basis not on homotypic group basis in outputs
- WGB:
Bei Gattungen und infragenerischen Rangstufen, die auf anderen Namen basieren wird [...] eine Kombination (Ar... - 09:56 AM feature request #9316: Add preference to define number of initialy shown elements in drop down menus
- As such dropdowns exist at many places we should have a predicate like "number of rows in dropdown" and define which ...
- 08:54 AM feature request #9316 (New): Add preference to define number of initialy shown elements in drop down menus
- mail ERS:
Bei der Auswahl des Distribution Status im Details View habe ich ein scroll-down-Menü, welches mir aber ... - 09:44 AM bug #6757 (Worksforme): AbcdImportWizard has all configurator flags set to false
- no, this is fixed in the meantime
11/20/2020
- 11:09 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- 11:08 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
- Works as expected
- 11:07 PM feature request #9299 (Feedback): Add LSID to author and reference details
- In general this is fixed.
Only issues:
* can we move URI above DOI and LSID in Reference Details View.
* can ... - 11:03 PM bug #6947 (Closed): Incorrect error for LSID field
- This works as expected
- 10:58 PM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
- This is fully fixed
- 10:47 PM feature request #9282 (Resolved): Add nomenclatural standing
- still need to update in cdmlight
- 07:07 PM feature request #9282 (In Progress): Add nomenclatural standing
- 10:44 PM bug #9312 (Resolved): NullPointerException (NPE) in TaxonNamePopupEditor
- This should be fixed with the current update script. You need to reinstall a version prior to 5.18.0 and run the upda...
- 03:34 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
- this seems to be due to a problem in the model upgrade script which misses to handle NomeclaturalSources correctly an...
- 01:51 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
- beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s...
- 10:07 PM feature request #5795 (Resolved): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
- 10:00 PM Revision e394d81a (cdmlib): ref #6591 fix SingleTermRemover
- 09:18 PM Revision 53ffcb3d (cdmlib-apps): ref #9282 adapt app-import to nomenclaturalStanding
- 09:17 PM Revision 88a917f1 (cdmlib-apps): ref #6591 adapt original spelling in app-import
- 07:05 PM Revision af1ee281 (taxeditor): ref #9282 adapt TaxEditor to nomenclatural standing
- 06:32 PM Revision 8d7efe50 (taxeditor): update taxeditor to v5.18.5
- 06:26 PM Revision 358b5ee6 (cdm-vaadin): update vaadin to v5.18.5
- 06:23 PM Revision 14a6a2a9 (cdmlib): fix endSchemaVersion in SchemaUpdater_5184_5185
- 06:20 PM task #9315 (Closed): Remove old single source citation and microCitation columns
- Include all single sources from #6581
For nomenclatural source it may look like
~~~sql
//#9315 remove ... - 06:17 PM task #9314 (New): Swap 'is conserved against'
- We may think about swapping the direction of "is conserved against" .
This might be an advantage when evaluating t... - 06:09 PM Revision 1f256a93 (cdmlib): update cached model to 5.18.5
- 06:08 PM bug #8859 (Closed): RegistrationItemNameAndTypeButtons invalid regex pattern
- 06:08 PM bug #8859 (Resolved): RegistrationItemNameAndTypeButtons invalid regex pattern
- Applied in changeset commit:cdm-vaadin|2deb1814c68bd161651f888988f74b04e659a928.
- 06:08 PM Revision 2deb1814 (cdm-vaadin): fix #8859 quoting literal string before use in regex function
- 06:07 PM Revision 374e76ca (cdmlib): ref #6581 fix update script for nomenclatural sources / nomenclatural status sources
- 06:07 PM Revision 1712450e (cdmlib): finalize update script vor version 5.18.4
- 06:07 PM Revision 11a38b45 (cdmlib): ref #9311 adapt name parser to updated nom status labels
- 06:07 PM Revision cc259f91 (cdmlib): minor
- 06:07 PM Revision 0f9c4a8b (cdmlib): ref #9311 adapt TermRepresentationUpdater for idInVoc updating
- 06:07 PM Revision 8b5c5b10 (cdmlib): ref #9272 add 5 new nomenclatural status types
- 06:06 PM Revision 9f381a15 (cdmlib): ref #6591 Use TaxonName.nomSource.NameUsedInSource for original spelling
- 06:06 PM Revision f9404583 (cdmlib): ref #9282 adapt NomenclaturalStatusType.csv to nomenclaturalStanding
- 06:06 PM Revision bc07028c (cdmlib): ref #9282 some final fixes and javadoc updates for NomenclaturalStatusType and nomenclaturalStanding
- 06:06 PM Revision d99f9c25 (cdmlib): ref #9282 adapt some nomenclatural standings in test dataset and fix/cleanup update script
- 06:06 PM Revision 13e8b7f4 (cdmlib): ref #9311 update labels in test terms
- 06:06 PM Revision a3a00b7a (cdmlib): ref #9282 add NomenclaturalStanding and INomenclaturalStanding and related method in TaxonName, NomenclaturalStatusType and NameRelationshipType
- 06:06 PM Revision 54aff43a (cdmlib): ref #9311 update script for nom status and name rel term label updates
- 06:06 PM Revision 62ea9850 (cdmlib): cleanup
- 05:08 PM feature request #9224 (Closed): openlayers map handles server error per layer and presents a user message
- fully solved
- 05:01 PM task #6591 (Resolved): Use name used in source for original spelling
- 04:48 PM bug #9313 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor
- please review once #9312 is also solved - needs prior communication with the dev team to check that the data base is ...
- 01:58 PM bug #9313 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor
- beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s...
- 04:46 PM Revision 004972d5 (cdm-vaadin): ref #9313 further init strategy extension to adapt to new OriginalSources ref #6581
- 04:45 PM feature request #9272 (Resolved): Add missing nomenclatural status
- Finally we added
protected
in sched.
pro syn.
orth. var. (as status)
comb. ined. - 03:01 PM bug #9311 (In Progress): Update some (abbrev) labels for nomenclatural status types
- 12:40 PM bug #9311 (Closed): Update some (abbrev) labels for nomenclatural status types
- opus. utique oppr. => op. utique oppr.
nom. orth. cons. => orth. cons.
nom. orth. cons. prop. => orth. cons. prop.
... - 01:05 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
- 09:34 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
- Gomphonemopsis ligowskii is published and has a holotype.
I inserted a unpublished test reference Kusber in Zeitschr... - 09:17 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
- Checked this example. The issue is perfectly solved. Before we close the ticket, I want to find an example with mixed...
- 11:51 AM Revision dea3754f (taxeditor): ref #9307: add preference page for termtrees and adapt label provider
- 11:51 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
- please review
- 11:06 AM Revision aa2fb1b5 (cdmlib): correct handling of doubtful synonyms
- 11:02 AM Revision 68bfcb66 (cdmlib): avoid NPE in Typedesignation Manager for sources without reference
- 10:54 AM Revision 43e9fd92 (taxeditor): move condensedDistribution preference to distribution preferences
- 08:40 AM bug #9310 (New): Deleting a taxon with all synonyms fails for the basionym
- The synonym set as basionym is not deleted because the check for basionym prevents the delete. There should be anothe...
- 08:32 AM feature request #7797: Second nomenclatural reference
- AM:
... Eine Idee wäre, den Text dieser zweiten Referenzen statt in die NameFacts in die neue Nomenclatural Sourc...
11/19/2020
- 07:29 PM Revision c23a56d8 (cdm-dataportal): harmonizing loading indicator color with other openlayers controls
- 07:05 PM Revision fc4f8c8d (cdm-dataportal): ref #9224 reporting WMS tile loading errors per layer in the message console
- 05:14 PM bug #9184 (Closed): WSOD in advanced search cdm_dataportal/search
- After re-indexing the problem does no longer occur.
discrepancies of the search index with the database could be m... - 01:38 PM bug #9184: WSOD in advanced search cdm_dataportal/search
- This problems seems to be caused by search indices which are not in sync with the cdm db.
The data portal now igno... - 05:06 PM Revision 78fb1106 (cdm-dataportal): fix for unavailable custom_placeholder_image
- 03:38 PM feature request #9309: Improve handling of specimen without titlecache in cdmLight
- The problem here is not primarily a cdmlight issue but an issue of missing title cache strategy (formatter) for Deriv...
- 01:55 PM feature request #9309 (New): Improve handling of specimen without titlecache in cdmLight
- copied from #9262:
Ausgabe -title cache generation not implemented-. Das kommt, soweit ich sehe, nur bei specimens... - 03:09 PM Revision 72408704 (cdmlib): fix presence questionable handling in test terms
- 02:12 PM Revision dee298b3 (cdmlib): Update javadoc for CdmPreference related classes.
- 02:01 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
- This is fixed for all sources listed above, for sec reference I create a new ticket or we create a new one when the s...
- 01:58 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- all issues are implemented except the specimen without titleCache, therefore a new ticket exist (#9309)
- 01:56 PM feature request #9262 (Resolved): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- 01:36 PM Revision 04b1e433 (cdm-dataportal): ref #9184 ignoring null entities in lucene search result and showing error to user
- 01:32 PM Revision cb6764ac (taxeditor): ref #9262: adapt cdmlight preference handling to renamed predicate
- 12:15 PM task #9266: Remove protologue section from TaxEditor
- Andreas Müller wrote:
> The protologue section should also be removed from local and DB preferences I guess as it pr... - 12:11 PM feature request #9297 (Resolved): Improve name of zip file for cdmLightExport
- please review
- 12:10 PM feature request #9299 (Resolved): Add LSID to author and reference details
- please review
- 11:50 AM Revision a33cb038 (cdmlib): PreferencePredicate condensedDistributionRecipe not only for cdmLight
- 11:47 AM Revision 3bf91ce5 (cdmlib): CondensedDistributionRecipe enum is IKeyLabel
- 10:51 AM Revision 36ac0d5d (taxeditor): add lsid field to person details
- 10:39 AM Revision c875d034 (taxeditor): add lsid field to reference details
- 10:34 AM Revision 99197d76 (taxeditor): ref #9297: improve zip file name - continue
- 10:33 AM Revision 8fd0ede6 (taxeditor): ref #8774: remember expansion state when removing feature from feature tree
- 10:26 AM Revision fb43bf21 (taxeditor): ref #9297: improve zip file name
- 10:12 AM Revision 8d36f034 (cdmlib): revert disabling condensed distr. string and add missing presence absence term
- 09:04 AM Revision 9a899f86 (cdmlib): disable condensed distribution string in cdmlight export test
11/18/2020
- 04:50 PM Revision 5d62d265 (cdmlib): ref #9262: minor
- 03:59 PM Revision 36fa3d85 (taxeditor): ref #9297: add preferences and some code cleaning
- 03:58 PM Revision c842935a (cdmlib): ref #9262: add possibility to export condensed distribution string - new preference predicate
- 03:56 PM Revision ddbbb621 (cdm-vaadin): ref #9308 slight improvement for type status in bold letters
- 03:54 PM task #9308: Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Even if the plural "s" problem is fixed, there are also other problems with showing the type status in bold letters...- 03:51 PM Revision 44bef338 (cdmlib): ref #9262: add possibility to export condensed distribution string
- 02:03 PM Revision 40eb3245 (cdmlib-apps): remove methods not in use in CubaExcelImport
- 02:02 PM Revision 46ade909 (cdmlib-apps): replace links to trac tickets by links to redmine tickets in javadoc
- 02:02 PM Revision 8275a22c (cdmlib-apps): cleanup
- 11:49 AM Revision da219650 (cdm-vaadin): ref #9290 comment on typdesignation citation problem
- 10:25 AM Revision 101d7930 (cdm-vaadin): cleanup
- 10:01 AM Revision 43dd85e9 (cdmlib): cleanup
- 10:01 AM Revision 138715e0 (cdmlib): replace links to trac tickets by links to redmine tickets in javadoc
11/17/2020
- 06:00 PM bug #9230 (Resolved): Type in preparation of a published name displayed in PhycoBank Portal Name Page
- please review
- 01:17 PM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
- it is the portal/name/{uuid}/typeDesignations which misses to filter the entities
- 05:59 PM Revision 71152358 (cdm-dataportal): ref #9230 fixing bug in test assertion
- 05:47 PM Revision 41dde72f (cdmlib): ref #9230 RegistrableEntityFilter function for type designations and using it for all relevant controller methods
- 05:47 PM Revision cc665988 (cdmlib): ref #9230 RegistrableEntityFilter to centralize filter functions
- 03:51 PM task #9308 (New): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- 03:51 PM task #9308 (Closed): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
- this task has been copied from #9302
see also #9306
Also fix the dangling plural `s` of "isotypes" which is not... - 10:14 AM Revision b0e51e45 (taxeditor): ref #9266: some layout issues and label renaming
- 09:09 AM Revision fc20040c (cdmlib): ref #9204 upgrade xstream version in cdmlib
- 09:07 AM task #9189: Move datasource view to taxeditor.local
- Is this for review?
- 09:01 AM feature request #9307: Preferences for display of termtrees and entries
- As this is related to #8774 I move it to the current milestone
- 08:27 AM feature request #9307 (Closed): Preferences for display of termtrees and entries
- Like for terms we need a preference and a preference page for how to display term trees/entries.
11/16/2020
- 05:31 PM Revision b728050e (cdm-dataportal): ref #9230 implementing test for exposure of unpublished type designation
- 02:44 PM task #9306: Registration result list: supress "designated by" reference in portal
- example url http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/registration-search/filter?ident...
- 02:43 PM task #9306 (Closed): Registration result list: supress "designated by" reference in portal
- 02:42 PM task #9306 (Resolved): Registration result list: supress "designated by" reference in portal
- Applied in changeset commit:cdm-dataportal|947ee97b814df065ae6381649c29ba3a5c5bd272.
- 02:01 PM task #9306 (Closed): Registration result list: supress "designated by" reference in portal
- this task has been copied from #9302
The portal used the `summaryTaggedText` to render the entries in `compose_reg... - 02:42 PM Revision 947ee97b (cdm-dataportal): fix #9306 filtering designated by reference out for registration list
- 10:47 AM Revision 1d916b0b (taxeditor): ref #9266: minor
- 10:24 AM Revision be28cd99 (taxeditor): code cleaning
- 09:58 AM feature request #9305: Include additional TypeDesignationStatus sort order (term tree) in CDM terms
- This requires that term tree can be loaded also during term loading. This in future should come from the term server ...
- 09:54 AM feature request #9305 (New): Include additional TypeDesignationStatus sort order (term tree) in CDM terms
- For type designation status we need different orders. In dropdown menus like in TaxEditor the current order which has...
- 09:25 AM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
- As this is related to the implementation of #6581 I move it to the current milestone.
- 09:20 AM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
- AM (Original Mail): ja das war mir auch schon aufgefallen. Habe keine richtige Lösung dafür. Klar ist, wenn unter „mo...
- 09:24 AM feature request #6581 (Resolved): Make all microreferenced references OriginalSources
- This is more or less solved. Open issues hshould be moved to new tickets if not yet done.
- 09:16 AM feature request #9304 (New): While creating new reference choosing the type first
- To avoid generic references the user should have to choose the reference type first when entering a new reference.
- 09:16 AM bug #9281: Set basionym not available for heterotypic synonyms after drag & drop
- This is core functionality so we should implement it soon.
- 09:11 AM feature request #9297: Improve name of zip file for cdmLightExport
- WGB: da fände ich die erste Option (Taxon/Klassifikation zuerst) auch schöner.
- 09:10 AM bug #9286: Re-connect and change user should be disabled if no datasource is connected yet
- please review
11/14/2020
- 08:34 PM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
- Please be aware that we do have a predicate for these attributes already. Better would be to implement the specific n...
- 08:29 PM bug #8984: Registration search result list: Format display of two type specimens
- At least the kommata handling might be fixed by implementations from #9279, but not sure
- 08:15 PM task #9300: Name Page: harmonize media specimen lectotype representations
- Andreas Kohlbecker wrote:
> Since the Citation part will end with a dot character, is seems incorrect to write "desig... - 08:05 PM bug #9302: Phycobank related issues for TypeDesignation formatting
- AM:
ich habe, wie besprochen versucht den Punkt
"The search result in phycobank currently includes citation inf... - 07:14 PM bug #9302: Phycobank related issues for TypeDesignation formatting
- AM: Bei der Diskussion ums Typusmodul vor ca. 2 Jahren hatten wir diskutiert und später auch implementiert, dass es 2...
- 07:12 PM bug #9302: Phycobank related issues for TypeDesignation formatting
- AM:
Bisher war gewünscht, Quellen als Kurzzitat mit „Autor (Jahr)“ anzugeben, was sowohl für die designated by Que... - 07:10 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting
- 05:05 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting
- In the Phycobank context a couple of issues for type formatting have been found, after TypeDesginationSetManager has ...
- 07:17 PM bug #9303 (New): [DISCUSS+IMPLEMENT] Make type designation micro references for non-lectotypes editable in TaxEditor
- AM:
Bei der Diskussion ums Typusmodul wurde damals beschlossen, dass wir lediglich bei Lecto-, Epi- und Neotypen u... - 06:41 PM Revision c3fed23d (cdmlib): ref #6591 fix SchemaUpdater_5184_5185 preliminary and add update script for moving original spellings
- 06:30 PM Revision 4272bcd2 (cdmlib): ref #6591 fix OriginalSpellingMover
- 06:29 PM Revision b08ed055 (cdmlib): ref #6591 fix SingleTermRemover
- 06:28 PM Revision 37e61bd2 (cdmlib): ref #9302 remove bracket around year in short citations for type designations and add citationDetail to short citations
- 06:26 PM Revision d98c0473 (cdmlib): cleanup
- 06:15 PM Revision 0ec42e61 (cdmlib): ref #6591 add first version of Original Spelling Mover
- 06:15 PM Revision 90b8a418 (cdmlib): add SchemaUpdater_5184_5185
- 12:36 AM feature request #9299: Add LSID to author and reference details
- As far as I understand WGB this is a functionality that is needed soon. As to me it sounds like easy to implement I s...
- 12:34 AM bug #6947: Incorrect error for LSID field
- I guess this is for review ...
11/13/2020
- 06:10 PM feature request #9301 (Closed): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
- for all TypeDesignations where `typeStatus.hasDesignationSource() == true` field for citation and citationDetail need...
- 05:41 PM feature request #8308 (Feedback): Extend specimen type designation editor
- I can't see that there is anything missing:
type status:

image references representi... - 04:36 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- the Excel file belongs to the other ticket - cleaning up here ....
- 04:35 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- Update to the Excel file.
Now the reference type is also shown.
"Irregular" Reference Types are highlighted. - 03:13 PM task #9300 (Feedback): Name Page: harmonize media specimen lectotype representations
- Since the Citation part will end with a dot character, is seems incorrect to write "designated by", it better should ...
- 03:10 PM task #9300 (In Progress): Name Page: harmonize media specimen lectotype representations
- The name *Heterocapsa triquetra* f. *apiculata* Er.Lindem. has a media specimen as lectotype.
* The "designated ... - 01:41 PM Revision d8d71f2a (taxeditor): ref #9266: minor
- 01:39 PM Revision 0faab9c0 (taxeditor): fix #6947: fix error for empty lsid field
- 01:39 PM bug #6947 (Resolved): Incorrect error for LSID field
- Applied in changeset commit:taxeditor|0faab9c0c0eae654583982c6f067e89851f758ee.
- 11:09 AM feature request #9299 (Closed): Add LSID to author and reference details
- 11:04 AM feature request #9298 (New): Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
- IDInSource and IDNamespace are not needed for nomenclatural source therefore the display should be handled by a prefe...
- 10:42 AM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
- The zip file created by the cdmLight export should contain more informations about the data.
For example:
{TaxonN... - 10:39 AM Revision 316f9d85 (taxeditor): fix wrong background after changing rank in nameDetailElement
- 10:11 AM feature request #9296 (New): Preference to show/not show infrageneric epithet for species
- ERS:
Eingabe eines name in source: im Formular „New Scientific Name“ gibt es einen bug: das scroll-down-Menü für „Ra... - 10:09 AM feature request #9295 (New): Preference to set default reference type for new references
- ERS:
Bei der Eingabe einer neuen Referenz steht der „Reference Type“ standardmäßig auf „Generic“. Der häufigste Fall... - 10:07 AM feature request #9294 (New): New person dialog with protected titleCache
- ERS:
Wenn ich im Laufe der Eingabe einer neuen Referenz einen neuen Autor eingeben muss, öffnet sich im Dialogfeld „... - 09:06 AM feature request #9262 (In Progress): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- 08:58 AM feature request #7700 (Closed): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
- I think we can close this ticket as there is kind of a follow up ticket with #9279
- 08:22 AM Revision bdd421bd (taxeditor): fix empty datasource view
11/12/2020
- 05:52 PM Revision 398413cc (cdmlib): ref #9253 removing initstrategy from DTO service method - cleaning up
- 04:44 PM Revision ba48bce0 (cdmlib): ref #9253 removing initstrategy from DTO service method
- 04:02 PM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
- no more problems
- 03:23 PM bug #9289: LazyInitializationException (LIE) in NameTypeDesignationEditor
- fixed by commit:cdm-vaadin|84760d27
- 03:54 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
- 03:52 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
- this ticket is either completed or open tasks are copied to new tickets, so it can be closed
- 03:50 PM task #9293 (New): Use use DTO for Set<IdentifiableSource> sources in SpecimenOrObservationBaseDTO
- copied from #9252
- 03:21 PM Revision 84760d27 (cdm-vaadin): ref #6581 adapting init strategy to new original source handling
- 11:39 AM Revision 68e7703e (taxeditor): ref #9266: restructure nomenclatural source detail element
- 11:04 AM Revision 468ead78 (taxeditor): ref #9266: restructure nomenclatural source detail element
11/11/2020
- 03:36 PM Revision 9270c708 (cdmlib): ref #9262: add homotypic group sortindex
- 12:28 PM feature request #9292 (New): find by name parts search implemented
- Implement a search similar to the `TaxonListController.doFindByNamePart()` function which allows for filtering names ...
- 11:41 AM Revision 8f36abc7 (taxeditor): ref #9199: fix problems with nomenclatural reference details
- 11:34 AM bug #8592: consider renaming menu entry General->Switch User
- Currently it is not wanted that users connect to another db as this does not work correctly due to static term proble...
- 08:59 AM discussion #7917: Revise ReferenceSystemTerms
- Do you really think that a measurement method is the same as the mathematical model that is needed to make sense of t...
- 08:29 AM Revision adf08111 (cdmlib): ref #8774: save term tree informations
- 08:24 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Katja Luther wrote:
> > ...
> > This is caused by dirty data, I cleaned up the database, n...
11/10/2020
- 05:53 PM discussion #7917: Revise ReferenceSystemTerms
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> > > So you are planning to use the r... - 05:51 PM discussion #7917: Revise ReferenceSystemTerms
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > So you are planning to use the reference system for computati... - 11:07 AM discussion #7917: Revise ReferenceSystemTerms
- Andreas Müller wrote:
> So you are planning to use the reference system for computations in the near future?
Plac... - 09:44 AM discussion #7917: Revise ReferenceSystemTerms
- So you are planning to use the reference system for computations in the near future?
- 08:52 AM discussion #7917: Revise ReferenceSystemTerms
- BTW: the CRS for GPS is WGS 84
For solving the the current misconception in the model we need to distinguish the *... - 05:04 PM task #9291 (Closed): Clear all unnecesary TypeDesignation.citation entities and citationDetails
- **This ticket should be solved after #9290 is being released and deployed to phycobank**
This is the query to whic... - 04:59 PM bug #9290 (Closed): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
- As shown in the analysis ( attachment:"TaxonName and Typedesignation citations unequal_diff.xlsx" ) using the `Regist...
- 02:48 PM Revision 2749233a (taxeditor): move menu item
- 02:42 PM Revision e2669604 (taxeditor): show menu items only once
- 12:19 PM bug #9286 (Resolved): Re-connect and change user should be disabled if no datasource is connected yet
- Applied in changeset commit:taxeditor|cea74dc3dd7328308f0fda121d2ccc5b7246c9a8.
- 12:17 PM Revision 5affe60a (taxeditor): ref #8774: do not allow duplicates in character editor
- 11:51 AM Revision e4a5c66f (taxeditor): ref #8774: do not allow duplicates in term tree editors if voc does not allow
- 11:34 AM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
- Buryatia belyaevae Kulikovskiy, Metzeltin & Lange-Bert. name type for Buryatia belyaevae Kulikovskiy, Metzeltin & Lan...
- 09:43 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Katja Luther wrote:
> ...
> This is caused by dirty data, I cleaned up the database, now the feature trees and the ... - 09:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> adding a child (which was a duplicate but the tree did not allow duplicates, don't know if t... - 09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
11/09/2020
- 03:44 PM Revision 59a68768 (cdmlib): fix syntax exception
- 03:39 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Unordered trees should preferably be ordered alphabetically by label or idInVoc or whatever the first part of the use...
- 03:29 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- When adding/removing terms the tree should stay expanded. Currently it collapses and you have to reopen it. Best woul...
- 03:27 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- ~~The duplicate check should be done when adding the term not only when saving it.~~
this is fixed. - 03:22 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- adding a child (which was a duplicate but the tree did not allow duplicates, don't know if this is relevant):
~~~
... - 03:13 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t... - 03:12 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t... - 03:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- ~~Changing the name of a vocabulary is not possible. The changes neither show up in the term tree editor nor do they ...
- 02:52 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an... - 02:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Can we show the details of a term anyway even if it is not editable in the term tree editor.... - 02:44 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Can we show the details of a term anyway even if it is not editable in the term tree editor. This is because the pure...
- 02:34 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named Area", "Others" and then...
- 02:31 PM bug #8774: Reimplement term tree editors to implement the general save strategy
- It is now possible to open 2 term tree Editors of the same type. This is not wanted as a term tree editor always edit...
- 02:28 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
- Trying to open the feature tree editor opened it in the buttom panel and no tree appeared and no conext menu existed ...
- 02:25 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- Andreas Müller wrote:
> Drag&drop still seems to work like in the old version with no dirty flag but immediate save ... - 02:07 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
- ~~Drag&drop still seems to work like in the old version with no dirty flag but immediate save of change.~~
- 03:16 PM feature request #9288 (Closed): Add symbols for flags in use for term trees in term tree editor
- The flags are "allow duplicates", "order relevant" and "is flat".
As long as we do not have better symbols we coul... - 02:49 PM feature request #9287 (Closed): Show term details in details view of term tree editor
- From ticket #8774:
Can we show the details of a term anyway even if it is not editable in the term tree editor. Th... - 02:42 PM Revision cea74dc3 (taxeditor): fix #9286: add core expression to reconnect menu item
- 02:12 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
- Currently choosing the re-connect leads to a NPE
- 02:06 PM discussion #7917: Revise ReferenceSystemTerms
- I remember the outcome differently.
> conglomerate of different types of possibilities to define what has been use... - 01:33 PM discussion #7917: Revise ReferenceSystemTerms
- We had discussed this issue some years ago and as far as I remember the result was, that the term ReferenceSystem mig...
- 01:44 PM feature request #8402: ordering typedesignations in name and taxon page
- follow up tasks are copied to #9283, #9284, #9285
- 01:43 PM task #9285 (New): apply the order of the chosen TermTrees to the typedesignations in name and taxon page
- This should preferably implemented by adding a query parameter to the webservice delivering the typedesignations.
... - 01:40 PM feature request #9284 (New): Admin UI to define the TermTrees as sort order preset
- this is required at least for the order of typedesignations in name and taxon page, see #8402
- 01:37 PM task #9283 (New): Webservice for TermTrees implemented
- this webservice may be similar to the vocabulary web service.
It is important that the order of terms is retained - 01:23 PM bug #9215 (Closed): Drop down for empty rank does not work
- This seems to be fully fixed.
- 01:15 PM task #9266 (Feedback): Remove protologue section from TaxEditor
- The protologue section should also be removed from local and DB preferences I guess as it probably has no effect to u...
11/06/2020
- 10:03 PM Revision 361c1e1d (cdmlib): cleanup and javadoc
- 05:20 PM Revision 071a56e6 (cdm-dataportal): ref #8402 ref #9279 adapting sort order to latest changes in TypeDesignationSetManager - commenting
- 05:15 PM Revision 22354fa0 (cdm-dataportal): ref #8402 ref #9279 adapting sort order to latest changes in TypeDesignationSetManager
- 05:13 PM feature request #8402: ordering typedesignations in name and taxon page
- The sort order should follow the order of the type designation status terms either of that in the vocabulary or in a ...
- 05:12 PM task #9266 (Resolved): Remove protologue section from TaxEditor
- The protologue section is removed/commented, please review afterwards I will remove the code completely.
- 05:09 PM Revision 8d385449 (taxeditor): rename/structure language preferences - admin prefs
- 05:06 PM Revision 8ec0ee52 (taxeditor): rename/structure language preferences
- 05:04 PM Revision 85ff485a (taxeditor): ref #9266: remove protologue section - needs to be cleaned up
- 03:59 PM feature request #9282 (Closed): Add nomenclatural standing
- According to #9272 there are 4 classes of nomenclatural standing. These should be stored together with the accordings...
- 01:41 PM Revision b6099a9c (cdmlib): ref #8774: missing files
- 01:26 PM Revision 9ad46d6b (cdmlib): ref #9252 piping baseofRecord through KeyTermValueProcessor
- 01:24 PM Revision d5d943cb (cdm-dataportal): ref #9252 adapting portal to latest DTO changes
- 01:22 PM feature request #9272: Add missing nomenclatural status
- The situation has changed. Later isonym already exists as name relationship, not as status. At the same time there ar...
- 01:06 PM feature request #9279: Improve type designation formatting and TypeDesignationSetManager
- An example for unparsed specimen from Cactaceae: Selenicereus anthonyanus (Alexander) D.R.Hunt
Resulting in:
–... - 12:16 PM feature request #9279 (In Progress): Improve type designation formatting and TypeDesignationSetManager
- 12:05 PM bug #9281 (Closed): Set basionym not available for heterotypic synonyms after drag & drop
- mail ERS:
beim Zusammenstellen von Synonymen in einer homotypischen Gruppe im Freitext-Editor ist es anschließend ... - 11:19 AM Revision b8a1c0fe (taxeditor): fix i18n
- 10:46 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
- all termtree editors are now switched to dtos. please review.
- 10:45 AM Revision a5c3b1fd (taxeditor): ref #8774: fix character creation
- 10:44 AM Revision 2cb9b55f (cdmlib): ref #8774: fix getPath of termnode
11/05/2020
- 05:18 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel()
- The property name IKeyTerm.message is misleading and confusing it should be renamed to label
----
From email co... - 04:04 PM report #8177 (Worksforme): Discuss: How to add originals of a type specimen
- We concluded that adding of intermediate originals to a specimen is a special case for phycobank. This usecase in not...
- 03:04 PM Revision c3e91e82 (taxeditor): add local to application MANIFEST
- 02:58 PM Revision cee85ae0 (taxeditor): ref #9154: fix fragment.e4xmi
- 02:21 PM Revision 1f3831c5 (cdmlib): cleanup
- 02:21 PM Revision ab1f58a9 (cdmlib): ref #9279 improve TypeDesignationSetManager
- 02:08 PM feature request #9279 (Closed): Improve type designation formatting and TypeDesignationSetManager
- these are open issues from #7700 and general issues
Some issues are
* parameterize formatting (with citation, w... - 12:50 PM Revision df35ccb3 (cdmlib): remove unused method in depracted FeatureNodeService
- 11:55 AM Revision de68e009 (cdmlib): ref #8774: avoid NPE in delete method
- 11:18 AM Revision f00aae44 (cdmlib): ref #8774: improve save method for new characternodes
- 09:58 AM feature request #9277: User rights for name, name type, and specimen type notes
- Submitters and curator(s) should have the same rights to create notes.
except for the status of the registrations:... - 09:23 AM feature request #9277 (New): User rights for name, name type, and specimen type notes
- Submitters and curator(s) should have the same rights to create notes.
Name editor:
Technical (currently enabled ... - 09:47 AM feature request #9278 (New): Notes for references
- Currently the curator has the option to fill
Editorial notes (for publication; not implemented yet)
Technical notes... - 09:32 AM Revision 8bf5dd93 (taxeditor): ref #8774: fix save of newly created character nodes
- 09:29 AM Revision 25b3a146 (cdmlib): ref #8774: save method for new characternodes
11/04/2020
- 04:20 PM Revision 6043d78e (cdm-dataportal): ref #9262 adapting dataportal to lowercase typedesignation status
- 03:16 PM Revision 002cdd32 (cdmlib): ref #9252 renaming property derivates to derivatives
- 03:16 PM Revision 0ff8cbcf (cdm-dataportal): ref #9252 renaming property derivates to derivatives - adapting dataportal
- 03:15 PM Revision 8b35bc36 (cdmlib): reference search for abbrevTitleCache and titleCache
- 03:15 PM Revision 5a8468de (cdmlib): ref #9262: smaller changes
- 03:09 PM Revision f51e4e4e (cdm-dataportal): ref #9252 removing deprecated property listLabel - adapting dataportal
- 03:09 PM Revision 03b91810 (cdmlib): ref #9252 removing deprecated property listLabel
- 03:04 PM Revision 8a605860 (cdm-dataportal): ref #9252 using IEnumTerm for recordBase - adapting dataportal
- 12:42 PM Revision 25dfcf2f (cdmlib): ref #9252 using IEnumTerm for recordBase
- 12:42 PM Revision 54b7f04e (cdmlib): ref #9252 documenting further needed refactoring
- 12:34 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
- tasks regarding DerivateDataDTO copied to other ticket
- 12:31 PM task #9276 (New): improve DerivateDataDTO
- copied from #9252
DerivateDataDTO needs harmonization:
* find better class name
* Use `List<MediaDTO>` instead... - 12:08 PM task #9268: Check cdm for GC G1 humongous objects problem
- Andreas Kohlbecker wrote:
> this finding can be especially relevant for imports and exports, therefore we should exa... - 12:00 PM task #9268 (Feedback): Check cdm for GC G1 humongous objects problem
- this finding can be especially relevant for imports and exports, therefore we should examine I/O functionalities whic...
- 11:29 AM task #9268: Check cdm for GC G1 humongous objects problem
- further results from the test server after startup and running the Data Portal Cacher for E+M by 8,5% (attachment:g1-...
- 10:47 AM task #9275 (New): Cleanup apache configuration from "AllowEncodedSlashes On"
- see #7563 for servers which need to be cleaned
- 10:42 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
11/03/2020
- 09:27 PM Revision c2139d5c (cdmlib): cleanup
- 06:30 PM task #9268 (In Progress): Check cdm for GC G1 humongous objects problem
- 06:30 PM task #9268: Check cdm for GC G1 humongous objects problem
- I enabled G1 GC logging as described in https://plumbr.io/handbook/gc-tuning-in-practice/other-examples/humongous-all...
- 05:45 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- I improved the regex in the DefaultMediaTransformations for digilib, this is the new default:
~~~json
[ {
"sch... - 05:42 PM Revision 41ed639d (cdmlib): ref #9134 improving regex in DefaultMediaTransformations for digilib
- 04:25 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Thumbnails have been removed from cyprus DB (also from AUD tables).
So the only open issue is now to update links ... - 01:59 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Removing thumbnails:
~~~sql
SELECT *
FROM MediaRepresentation mr
INNER JOIN MediaRepresentationPart mrp ON mrp.... - 02:02 PM feature request #9274 (New): Analyze where recalculating of taxon navigator is really necessary
- mail AM:
Wenn der Navigator verlinkt ist, wird sehr viel Zeit damit verbracht, den Navigator nach vielen Aktionen ... - 12:24 PM feature request #9273 (New): [DISCUSS] Unify Nomenclatural status and name relationships
- Often these 2 represent the same. The unified class would be a relation which is either unary or binary.
- 11:48 AM bug #8751 (Rejected): Replace saveOrUpdate() in AbstractTermTreeEditor
- 11:46 AM bug #8751 (Resolved): Replace saveOrUpdate() in AbstractTermTreeEditor
- This is fixed by using dtos for the termtree editors. See #8774.
Maybe we should set the status to rejected becaus... - 11:42 AM Revision 2931e154 (cdmlib): ref #8774: reuse treeDto for all node dtos
- 11:36 AM Revision 458132f7 (taxeditor): ref #8774: fix refresh after remove featurenode
- 11:07 AM feature request #9272: Add missing nomenclatural status
- We still need (Latin) abbreviations for these two status types.
- 11:05 AM feature request #9272 (Closed): Add missing nomenclatural status
- From the EDIT manual for nomenclatural status and name relationships.
Designations
* invalid names
* invali... - 10:24 AM Revision 5790f731 (taxeditor): ref #8774: fix drag & drop in character editor
11/02/2020
- 09:37 PM feature request #9271 (New): Improve E+M dataportal performance
- To fully release the E+M data portal which should try to improve the peformance to the performance difference between...
- 09:20 PM Revision d772a673 (cdmlib): ref #6589 adapt cdmlight export to new protologue handling
- 09:19 PM Revision e0d5e5a8 (cdmlib): cleanup
- 08:46 PM feature request #3665 (In Progress): Further implementation of original spelling name caching
- This has been mostly implemented in 4.7 and 4.8. Need to check if something is still open.
- 08:36 PM bug #7781: original spelling is missing for accepted taxon in taxon page
- As this is requested multiple times we should try to implement it in one of the next releases.
- 08:35 PM feature request #9270: show original spelling on taxon page
- This is probably a duplicate for #7781
- 08:28 PM feature request #9270 (Duplicate): show original spelling on taxon page
- ERS:
Der Name Vulpia fontqueriana has original spelling Vulpia fontquerana.
Daher wird mir im Editor im Freitextb... - 08:11 PM Revision d9495f8d (cdmlib): ref #8774: fix test in suite
- 08:08 PM Revision 12cee3aa (cdmlib): cleanup
- 05:02 PM Revision 7325a44d (cdmlib): cleanup
- 04:15 PM Revision 6320b0c9 (cdmlib): ref #6589 adapt cdmlib import scripts to new protologue handling
- 04:14 PM Revision 4f4efaf6 (cdmlib-apps): ref #6589 adapt import scripts to new protologue handling
- 03:08 PM Revision 41963d8b (taxeditor): ref #8774: smaller changes in character editor or correct right click menu usage
- 03:07 PM Revision 63802ff3 (cdmlib): cleanup
- 03:03 PM Revision bb68e768 (cdmlib): cleanup
- 02:31 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- posting the SQL INSERT statement to add the default transformation to a DB:
~~~sql
INSERT INTO CdmPreference
(key_su... - 01:57 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Ok agreed, I am closing this ticket. Please open a new one for further discussion when needed.
- 02:24 PM Revision 42b0120b (cdmlib): ref #8774: termnode dto tests - continue
- 02:22 PM Revision 9958faa9 (cdmlib): ref #8774: correct termtyoe in characterDto
- 02:15 PM Revision c10c3ee4 (cdmlib): ref #8774: avoid NPE when creating new Enum
- 02:00 PM task #9269: discuss with the flora of greece people if the new image viewer is to be activated
- I am assigning this ticket to you Andreas since you are the main contact for the FOG in the BDI group.
- 01:59 PM task #9269 (New): discuss with the flora of greece people if the new image viewer is to be activated
- please pass the ticket to me once we know the answer
- 01:36 PM task #9268: Check cdm for GC G1 humongous objects problem
- I can't see that we have objects of size in CDM real data
- 01:16 PM task #9268 (New): Check cdm for GC G1 humongous objects problem
- problems of the G1 when there are Objects >= 1MB in the heap:
https://dzone.com/articles/whats-wrong-with-big-ob... - 01:13 PM task #8865: more external-links to be implemented
- Email von Stefan Dressler und marco schmidt Frankfurt and Eckhard
Euro+Med/IDs:
für die Verlinkung zu uns wäre ... - 11:29 AM Revision 5fe18fef (cdmlib): fix test (cont.)
- 11:14 AM Revision cc517ed6 (cdmlib): fix test
- 11:14 AM Revision 329ee45b (cdmlib): cleanup
- 10:23 AM Revision f6651fc4 (taxeditor): rename bundle name in local
- 09:17 AM bug #9267: No sec reference for move change Synonym to accepted Taxon
- please review
- 09:15 AM bug #9267 (Resolved): No sec reference for move change Synonym to accepted Taxon
- Applied in changeset commit:cdmlib|593c7701c265521b6e3701942e0f6c7756304963.
- 09:01 AM bug #9267 (Closed): No sec reference for move change Synonym to accepted Taxon
- mail WGB:
mir ist aufgefallen, dass beim Umwandeln eines Synonyms in einen akzeptierten Namen dem neuen Taxon eine... - 09:14 AM Revision 593c7701 (cdmlib): fix #9267: add no sec reference to newly created taxon moved from synonym
- 08:44 AM bug #9263 (Resolved): Unify case for type designation status
- This has been fixed by using lower case for specimen type designations now.
This lead to test failures in TypeDesi...
11/01/2020
- 08:51 AM Revision cafef344 (cdmlib): cleanup
10/30/2020
- 02:33 PM Revision db1795af (cdmlib): ref #8774: implement tests for dto handling - test changing representation
- 02:23 PM Revision af4b4144 (cdmlib): ref #8774: implement tests for dto handling - comment the assert statement
- 02:22 PM Revision 1edfe89d (cdmlib): ref #8774: implement tests for dto handling - continue
- 02:20 PM Revision a1aece3d (cdmlib): ref #8774: implement tests for dto handling - continue
- 02:03 PM feature request #6589 (Resolved): Handle protologue as original source with URI link
- This is fixed now with model version 5.18.4.
However, #9266 and #9265 also need to be fixed before release - 02:01 PM task #9266 (Closed): Remove protologue section from TaxEditor
- after protologues have been moved now to nomenclaturalSource.externalLink.
- 01:55 PM Revision cafb8a16 (cdmlib): ref #8774: implement tests for dto handling - to be continued
- 01:54 PM Revision 22294efa (cdmlib): ref #8774: small change in dto creation
- 12:36 PM Revision b029bf34 (cdmlib): fix test and cdmlight export with html tags
- 12:36 PM Revision 5ec713a3 (cdmlib): revert: temporarily ignore CdmLightExportTest s
- 12:34 PM Revision a84e50c3 (cdmlib): temporarily ignore CdmLightExportTest s
- 10:55 AM Revision 9f095f86 (taxeditor): ref #6589 update taxeditor h2 test db
- 10:54 AM Revision 90b5ff20 (taxeditor): ref #8774: fix term combo for dto selection
- 10:52 AM Revision 7fea2e65 (cdm-vaadin): ref #6589 update vaadin h2 test db
- 10:48 AM Revision bee1d8ab (cdmlib): ref #6589 fix update script (incorrect alias) and update remote-webapp h2 test db
- 10:47 AM Revision f5eab879 (cdmlib): ref #9262: fix homotypical group name comparator
- 10:45 AM Revision f3ff329f (cdmlib): ref #8774: save plural of representation was missing
- 10:40 AM Revision 1d4af21d (cdmlib): ref #8802 fix jaxb annotations for ExtendedTimePeriod
- 10:40 AM Revision 1d1b820e (cdmlib): ref #9263 use lower case for SpecimenTypeDesignationStatus
- 10:40 AM Revision cb45d97c (cdmlib): ref #6589 finalize update script for
- 10:40 AM Revision b45d1a7d (cdmlib): framework for SchemaUpdate to 5.18.4
- 09:23 AM feature request #9225 (Resolved): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
- I think the vaadin test are now fixed (?). So can we close this ticket?
10/29/2020
- 11:13 PM Revision d5603cc5 (cdmlib): ref #9262: add homotypic group strings
- 09:50 PM Revision 900692d8 (taxeditor): revert changes
- 09:19 PM Revision edc4e5ae (taxeditor): ref #8774: adapt term tree editors to dto usage
- 04:54 PM Revision 4d68581f (cdmlib): ref #8774: further implementations for using term dtos in editor
- 03:55 PM task #9265 (Closed): Adapt dataportal to new protologue handling
- Protologues are now handled as external links of the nomenclatural source (#6589). The dataportals (and maybe webserv...
- 03:54 PM feature request #6589: Handle protologue as original source with URI link
- SQL to find linking data to DescriptionBase holding the protologue image
~~~sql
SELECT n.titleCache
FROM TaxonN... - 03:54 PM feature request #6589: Handle protologue as original source with URI link
- SQL to find linking data to TextData holding the protologue image
~~~sql
SELECT DO.sources_id -- DO.DescriptionEl... - 03:53 PM feature request #6589: Handle protologue as original source with URI link
- ~~The following records (sources for textdata) should also be deleted from AUD tables in Cichorieae . All other DBs d...
- 03:07 PM Revision a63cd5d3 (cdmlib): ref #8802 add TemporalData to jaxb annotation in DescriptionBase
- 03:07 PM Revision 2ee2a9f2 (cdmlib): cleanup
10/28/2020
10/27/2020
- 01:44 PM Revision 575c50be (taxeditor): catch widget is disposed
- 01:09 PM Revision c64a02e7 (cdmlib): ref #69554: fix test
- 11:58 AM Revision 9f7f7692 (cdmlib): ref #69554: adapt cdmLight export
- 11:14 AM bug #9263 (In Progress): Unify case for type designation status
- NKo: ich würde sagen, wenn es als Satzanfang ausgegeben wird, dann groß, sonst klein. Auf gar keinen Fall abkürzen.
...
10/26/2020
- 11:23 AM bug #9264 (Closed): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat (H...
Also available in: Atom