Activity

From 10/05/2020 to 11/03/2020

11/03/2020

06:30 PM task #9268 (In Progress): Check cdm for GC G1 humongous objects problem: Andreas Kohlbecker
06:30 PM task #9268: Check cdm for GC G1 humongous objects problem: I enabled G1 GC logging as described in https://plumbr.io/handbook/gc-tuning-in-practice/other-examples/humongous-all... Andreas Kohlbecker
05:45 PM feature request #9134: Rule based creation of additional media representations "on the fly": I improved the regex in the DefaultMediaTransformations for digilib, this is the new default:
~~~json
[ {
"sch... Andreas Kohlbecker
04:25 PM task #9132: Update cyprus images to Scaler default API and add thumbnails: Thumbnails have been removed from cyprus DB (also from AUD tables).
So the only open issue is now to update links ... Andreas Müller
01:59 PM task #9132: Update cyprus images to Scaler default API and add thumbnails: Removing thumbnails:
~~~sql
SELECT *
FROM MediaRepresentation mr
INNER JOIN MediaRepresentationPart mrp ON mrp.... Andreas Müller
02:02 PM feature request #9274 (New): Analyze where recalculating of taxon navigator is really necessary: mail AM:
Wenn der Navigator verlinkt ist, wird sehr viel Zeit damit verbracht, den Navigator nach vielen Aktionen ... Katja Luther
12:24 PM feature request #9273 (New): [DISCUSS] Unify Nomenclatural status and name relationships: Often these 2 represent the same. The unified class would be a relation which is either unary or binary.
Andreas Müller
11:48 AM bug #8751 (Rejected): Replace saveOrUpdate() in AbstractTermTreeEditor: Katja Luther
11:46 AM bug #8751 (Resolved): Replace saveOrUpdate() in AbstractTermTreeEditor: This is fixed by using dtos for the termtree editors. See #8774.
Maybe we should set the status to rejected becaus... Katja Luther
11:07 AM feature request #9272: Add missing nomenclatural status: We still need (Latin) abbreviations for these two status types. Andreas Müller
11:05 AM feature request #9272 (Closed): Add missing nomenclatural status: From the EDIT manual for nomenclatural status and name relationships.
Designations
* invalid names
* invali... Andreas Müller

11/02/2020

09:37 PM feature request #9271 (In Progress): Improve E+M dataportal performance: To fully release the E+M data portal which should try to improve the peformance to the performance difference between... Andreas Müller
08:46 PM feature request #3665 (In Progress): Further implementation of original spelling name caching: This has been mostly implemented in 4.7 and 4.8. Need to check if something is still open. Andreas Müller
08:36 PM bug #7781: original spelling is missing for accepted taxon in taxon page: As this is requested multiple times we should try to implement it in one of the next releases. Andreas Müller
08:35 PM feature request #9270: show original spelling on taxon page: This is probably a duplicate for #7781 Andreas Müller
08:28 PM feature request #9270 (Duplicate): show original spelling on taxon page: ERS:
Der Name Vulpia fontqueriana has original spelling Vulpia fontquerana.
Daher wird mir im Editor im Freitextb... Andreas Müller
02:31 PM feature request #9134: Rule based creation of additional media representations "on the fly": posting the SQL INSERT statement to add the default transformation to a DB:
~~~sql
INSERT INTO CdmPreference
(key_su... Andreas Kohlbecker
01:57 PM feature request #9134: Rule based creation of additional media representations "on the fly": Ok agreed, I am closing this ticket. Please open a new one for further discussion when needed. Andreas Kohlbecker
02:00 PM task #9269: discuss with the flora of greece people if the new image viewer is to be activated: I am assigning this ticket to you Andreas since you are the main contact for the FOG in the BDI group. Andreas Kohlbecker
01:59 PM task #9269 (New): discuss with the flora of greece people if the new image viewer is to be activated: please pass the ticket to me once we know the answer Andreas Kohlbecker
01:36 PM task #9268: Check cdm for GC G1 humongous objects problem: I can't see that we have objects of size in CDM real data Andreas Müller
01:16 PM task #9268 (New): Check cdm for GC G1 humongous objects problem: problems of the G1 when there are Objects >= 1MB in the heap:
https://dzone.com/articles/whats-wrong-with-big-ob... Andreas Kohlbecker
01:13 PM task #8865: more external-links to be implemented: Email von Stefan Dressler und marco schmidt Frankfurt and Eckhard
Euro+Med/IDs:
für die Verlinkung zu uns wäre ... Andreas Kohlbecker
09:17 AM bug #9267: No sec reference for move change Synonym to accepted Taxon: please review Katja Luther
09:15 AM bug #9267 (Resolved): No sec reference for move change Synonym to accepted Taxon: Applied in changeset commit:cdmlib|593c7701c265521b6e3701942e0f6c7756304963. Katja Luther
09:01 AM bug #9267 (Closed): No sec reference for move change Synonym to accepted Taxon: mail WGB:
mir ist aufgefallen, dass beim Umwandeln eines Synonyms in einen akzeptierten Namen dem neuen Taxon eine... Katja Luther
08:44 AM bug #9263 (Resolved): Unify case for type designation status: This has been fixed by using lower case for specimen type designations now.
This lead to test failures in TypeDesi... Andreas Müller

10/30/2020

02:03 PM feature request #6589 (Resolved): Handle protologue as original source with URI link: This is fixed now with model version 5.18.4.
However, #9266 and #9265 also need to be fixed before release Andreas Müller
02:01 PM task #9266 (Closed): Remove protologue section from TaxEditor: after protologues have been moved now to nomenclaturalSource.externalLink. Andreas Müller
09:23 AM feature request #9225 (Resolved): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass: I think the vaadin test are now fixed (?). So can we close this ticket? Andreas Müller

10/29/2020

03:55 PM task #9265 (Closed): Adapt dataportal to new protologue handling: Protologues are now handled as external links of the nomenclatural source (#6589). The dataportals (and maybe webserv... Andreas Müller
03:54 PM feature request #6589: Handle protologue as original source with URI link: SQL to find linking data to DescriptionBase holding the protologue image
~~~sql
SELECT n.titleCache
FROM TaxonN... Andreas Müller
03:54 PM feature request #6589: Handle protologue as original source with URI link: SQL to find linking data to TextData holding the protologue image
~~~sql
SELECT DO.sources_id -- DO.DescriptionEl... Andreas Müller
03:53 PM feature request #6589: Handle protologue as original source with URI link: ~~The following records (sources for textdata) should also be deleted from AUD tables in Cichorieae . All other DBs d... Andreas Müller

10/27/2020

11:14 AM bug #9263 (In Progress): Unify case for type designation status: NKo: ich würde sagen, wenn es als Satzanfang ausgegeben wird, dann groß, sonst klein. Auf gar keinen Fall abkürzen.
... Andreas Müller

10/26/2020

11:23 AM bug #9264 (Closed): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button: mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat (H... Katja Luther

10/24/2020

09:28 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export: this ticket duplicates #9262 Andreas Müller

10/23/2020

06:00 PM bug #9263 (Closed): Unify case for type designation status: Current csv files use lower case for NameTypeDesignationStatus and upper case for SpecimenTypeDesignationStatus. This... Andreas Müller

10/22/2020

12:45 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and other Caryophallales: Mail WGB 2020-10-22:
1. ~~Fehlerhafter Literatur-Output – zwei Autoren + et al. statt Erstautor + et al., siehe an... Andreas Müller
12:15 PM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status(): Andreas Kohlbecker
12:15 PM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes(): Andreas Kohlbecker
12:15 PM bug #9261 (Resolved): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes(): Applied in changeset commit:cdmlib|8728f23bae0e8758c46f09837af01070922d1d41. Andreas Kohlbecker
11:35 AM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes(): http://api.cybertaxonomy.org/caryophyllales/portal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749/taxonNodes.json fails w... Andreas Kohlbecker

10/21/2020

10:02 AM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status(): http://caryophyllales.org/cdm_dataportal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749
~~~
Recoverable fatal error: ... Andreas Kohlbecker

10/14/2020

02:03 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs: Problems with the current implementations:
* Naming:
* PreservedSpecimenDTO should be named DerivedUnitDTO
... Andreas Kohlbecker

10/13/2020

06:04 PM bug #7606 (Duplicate): compact display of CDM Point data: closing as duplicate of #3978 Andreas Kohlbecker
06:02 PM task #3978 (Closed): Specimenview path: Compact representation of exactLocation: Andreas Kohlbecker
06:02 PM task #3978 (Resolved): Specimenview path: Compact representation of exactLocation: Andreas Kohlbecker
06:00 PM task #9251 (New): Specimenview path: better representation of RecordBasis: Copied from #3978
Hallo Andreas,
Bei der Specimenanzeige gäbe es glaube ich noch einige einfache Verbesserung... Andreas Kohlbecker

10/12/2020

06:02 PM discussion #7917: Revise ReferenceSystemTerms: I checked the usage of ReferenceSystemTerms in the production dbs:
~~~
cdm_production_algaterra
-- WGS84
-... Andreas Kohlbecker
04:48 PM discussion #7917: Revise ReferenceSystemTerms: Andreas Kohlbecker wrote:
> I discovered that adding 'gazetteer' was an explicit requirement which was handled in #2... Andreas Kohlbecker
03:26 PM feature request #9249 (Closed): compact display of collection information: Andreas Kohlbecker
02:22 PM feature request #9249 (Closed): compact display of collection information: Andreas Kohlbecker
02:48 PM feature request #9250 (New): collection page implemented: also enable link rendering in `function render_collection($collection, $do_link = false )` by changing the default if... Andreas Kohlbecker
01:02 PM bug #9248 (New): ABCD import configuration is not fail save for creation of new classification: When licking on "do not create new classification for new taxa" but missing to define the classification for adding t... Katja Luther
09:35 AM bug #9247 (Duplicate): Link with taxon does not work correctly: mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat ... Katja Luther
09:24 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export: mail WB:
Hallo,
wir sind ja dabei, mehrere Datenpaper vorzubereiten. Die Formate sind noch nicht ganz klar (hängt... Katja Luther

10/09/2020

03:35 PM bug #9245 (Feedback): Creating derived units from existing derived unit is not possible in specimen tree editor: Trying to add a derived unit to an already existing derived unit is not possible because the menu entry "Add/Hinzufüg... Katja Luther
01:56 PM bug #7686 (Closed): Specimen title cache issues in data portal specimen table: to me it seems as if all issues are fixed now, except for the issue of the missing comma between two specimen type de... Andreas Kohlbecker
01:24 PM feature request #3307: optionally reduce complexity in specimen display: I think that we rather should work on a better and more concise layout than solving this with a settings option. Andreas Kohlbecker
01:19 PM feature request #2985 (Closed): Improve Specimen details display: remaining issues and suggestions from comment 23 copied to other issues.
So we can close this issue now. Andreas Kohlbecker
12:47 PM feature request #9244 (New): Improve NamedArea page: copied from #2985#note-23
Show abbrev label, description, named area type, URI, valid period, and maybe also suppl... Andreas Kohlbecker
11:27 AM feature request #8854 (Closed): Choose new base font size for the portal: all suggestions for further improvement have been copied to new tickets (#9242, #9243) and this issue here can thus b... Andreas Kohlbecker
11:24 AM task #9243 (New): zen_dataportal theme: Discuss reduced fontsize of headings: follow up to #8854
Walter wrote:
> Ansonsten fällt mir hier nur auf, dass die Überschriften (fact categories) e... Andreas Kohlbecker
11:19 AM feature request #9242 (New): cdm_taxontree: strategy for better readability: follow up to #8854
walter wrote:
> caryophyllales_spp: Sieht gut aus, bis auf den Navigator – da wird’s dann zi... Andreas Kohlbecker

10/08/2020

06:48 PM bug #9238 (Resolved): pure entities in DerivateDTO.derivates may cause LIEs: this should be fully solved now. Ticket can be closed as long as no further problems are popping up during the testing. Andreas Kohlbecker
06:40 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs: The introduction of the SpecimenTypeDesignationDTO causes a couple problems since this dto is quite incomplete so far. Andreas Kohlbecker
06:38 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs: this issue is problematic also in the context of other controller methods where DerivateDTO is being involved.
Ada... Andreas Kohlbecker

10/06/2020

05:25 PM bug #9240: nomenclatural status missing in name and registration page: Yes, it can be closed. The examples in PhycoBank are displayed perfectly. Wolf-Henning Kusber
05:01 PM bug #9240 (Resolved): nomenclatural status missing in name and registration page: default settings updated.
I think this ticket can be closed.
@Henning: Could you please review? Andreas Kohlbecker
01:26 PM bug #9240 (In Progress): nomenclatural status missing in name and registration page: The
name render part for the nom status was missing in the default render template.
I added this to the phycob... Andreas Kohlbecker
11:41 AM bug #9240 (Closed): nomenclatural status missing in name and registration page: Navicula adminensis has status *nom. illeg* or *nom. superlf.*
https://www.phycobank.org/cdm_dataportal/name/26bd1... Andreas Kohlbecker
02:42 PM feature request #9209: name page, registration page: show annotations for names and fieldunits: Example: http://phycobank.org/102598 Wolf-Henning Kusber
11:27 AM feature request #9209 (Closed): name page, registration page: show annotations for names and fieldunits: please enter "Etymology: " as prefix to the annotation text.
Andreas Kohlbecker
01:41 PM bug #9241 (New): replace/adapt descriptionPart in render templated: after #6589 is fully solved the display of prologues in the data portal need to be adapted.
The render template de... Andreas Kohlbecker

10/05/2020

01:42 PM feature request #9239 (New): When opening bulk editor via referencing objects view the selected record should have the focus: ... so that the details view (and other views) are filled automatically Andreas Müller

Also available in: Atom

Project

General

Profile

EDIT

Activity

Activity

11/03/2020

11/02/2020

10/30/2020

10/29/2020

10/27/2020

10/26/2020

10/24/2020

10/23/2020

10/22/2020

10/21/2020

10/20/2020

10/19/2020

10/16/2020

10/15/2020

10/14/2020

10/13/2020

10/12/2020

10/09/2020

10/08/2020

10/06/2020

10/05/2020