Activity
From 10/04/2020 to 11/02/2020
11/02/2020
- 09:37 PM feature request #9271 (In Progress): Improve E+M dataportal performance
- To fully release the E+M data portal which should try to improve the peformance to the performance difference between...
- 08:46 PM feature request #3665 (In Progress): Further implementation of original spelling name caching
- This has been mostly implemented in 4.7 and 4.8. Need to check if something is still open.
- 08:36 PM bug #7781: original spelling is missing for accepted taxon in taxon page
- As this is requested multiple times we should try to implement it in one of the next releases.
- 08:35 PM feature request #9270: show original spelling on taxon page
- This is probably a duplicate for #7781
- 08:28 PM feature request #9270 (Duplicate): show original spelling on taxon page
- ERS:
Der Name Vulpia fontqueriana has original spelling Vulpia fontquerana.
Daher wird mir im Editor im Freitextb... - 02:31 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- posting the SQL INSERT statement to add the default transformation to a DB:
~~~sql
INSERT INTO CdmPreference
(key_su... - 01:57 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Ok agreed, I am closing this ticket. Please open a new one for further discussion when needed.
- 02:00 PM task #9269: discuss with the flora of greece people if the new image viewer is to be activated
- I am assigning this ticket to you Andreas since you are the main contact for the FOG in the BDI group.
- 01:59 PM task #9269 (New): discuss with the flora of greece people if the new image viewer is to be activated
- please pass the ticket to me once we know the answer
- 01:36 PM task #9268: Check cdm for GC G1 humongous objects problem
- I can't see that we have objects of size in CDM real data
- 01:16 PM task #9268 (New): Check cdm for GC G1 humongous objects problem
- problems of the G1 when there are Objects >= 1MB in the heap:
https://dzone.com/articles/whats-wrong-with-big-ob... - 01:13 PM task #8865: more external-links to be implemented
- Email von Stefan Dressler und marco schmidt Frankfurt and Eckhard
Euro+Med/IDs:
für die Verlinkung zu uns wäre ... - 09:17 AM bug #9267: No sec reference for move change Synonym to accepted Taxon
- please review
- 09:15 AM bug #9267 (Resolved): No sec reference for move change Synonym to accepted Taxon
- Applied in changeset commit:cdmlib|593c7701c265521b6e3701942e0f6c7756304963.
- 09:01 AM bug #9267 (Closed): No sec reference for move change Synonym to accepted Taxon
- mail WGB:
mir ist aufgefallen, dass beim Umwandeln eines Synonyms in einen akzeptierten Namen dem neuen Taxon eine... - 08:44 AM bug #9263 (Resolved): Unify case for type designation status
- This has been fixed by using lower case for specimen type designations now.
This lead to test failures in TypeDesi...
10/30/2020
- 02:03 PM feature request #6589 (Resolved): Handle protologue as original source with URI link
- This is fixed now with model version 5.18.4.
However, #9266 and #9265 also need to be fixed before release - 02:01 PM task #9266 (Closed): Remove protologue section from TaxEditor
- after protologues have been moved now to nomenclaturalSource.externalLink.
- 09:23 AM feature request #9225 (Resolved): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
- I think the vaadin test are now fixed (?). So can we close this ticket?
10/29/2020
- 03:55 PM task #9265 (Closed): Adapt dataportal to new protologue handling
- Protologues are now handled as external links of the nomenclatural source (#6589). The dataportals (and maybe webserv...
- 03:54 PM feature request #6589: Handle protologue as original source with URI link
- SQL to find linking data to DescriptionBase holding the protologue image
~~~sql
SELECT n.titleCache
FROM TaxonN... - 03:54 PM feature request #6589: Handle protologue as original source with URI link
- SQL to find linking data to TextData holding the protologue image
~~~sql
SELECT DO.sources_id -- DO.DescriptionEl... - 03:53 PM feature request #6589: Handle protologue as original source with URI link
- ~~The following records (sources for textdata) should also be deleted from AUD tables in Cichorieae . All other DBs d...
10/27/2020
- 11:14 AM bug #9263 (In Progress): Unify case for type designation status
- NKo: ich würde sagen, wenn es als Satzanfang ausgegeben wird, dann groß, sonst klein. Auf gar keinen Fall abkürzen.
...
10/26/2020
- 11:23 AM bug #9264 (Closed): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat (H...
10/24/2020
- 09:28 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
- this ticket duplicates #9262
10/23/2020
- 06:00 PM bug #9263 (Closed): Unify case for type designation status
- Current csv files use lower case for NameTypeDesignationStatus and upper case for SpecimenTypeDesignationStatus. This...
10/22/2020
- 12:45 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- Mail WGB 2020-10-22:
1. ~~Fehlerhafter Literatur-Output – zwei Autoren + et al. statt Erstautor + et al., siehe an... - 12:15 PM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
- 12:15 PM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
- 12:15 PM bug #9261 (Resolved): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
- Applied in changeset commit:cdmlib|8728f23bae0e8758c46f09837af01070922d1d41.
- 11:35 AM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
- http://api.cybertaxonomy.org/caryophyllales/portal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749/taxonNodes.json fails w...
10/21/2020
- 10:02 AM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
- http://caryophyllales.org/cdm_dataportal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749
~~~
Recoverable fatal error: ...
10/20/2020
- 01:13 PM task #8081: Complete removal of redmine communication hub instances
- all code has been removed now! see #7936
- 01:12 PM task #7315 (Rejected): remove workaround RedmineTransportAccessor
- no longer needed, since the redmine message hub has been completely rejected
- 01:10 PM bug #7936 (Closed): Consider complete removal of redmine communication hub code
10/19/2020
- 11:29 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
- This ticket needs to be fixed urgently as it makes the specimen tree editor impossible to use
- 05:04 PM bug #6757: AbcdImportWizard has all configurator flags set to false
- Is this still an open issue? If yes we should fix it soon (probably a no-brainer), if not, we should close this ticke...
- 02:05 PM task #9252 (Resolved): Harmonize SpecimenOrOberservationBase related DTOs
- should be solved now, needs review
- 09:56 AM task #9259 (Closed): reduce fields in TermBase json serializations
- 09:55 AM task #9259 (Resolved): reduce fields in TermBase json serializations
- Applied in changeset commit:cdmlib|3ae4f12f20159b7e0ddb04c68f4bfc5fb17d5481.
- 09:43 AM task #9259 (In Progress): reduce fields in TermBase json serializations
- 09:43 AM task #9259 (Closed): reduce fields in TermBase json serializations
- The fields in json serializations produced by the TermBaseBeanProcessor can be reduced.
here an example of the cur...
10/16/2020
- 01:50 PM feature request #9258 (Closed): Use Partial for date in FieldUnitDTO
- 01:50 PM feature request #9258 (Resolved): Use Partial for date in FieldUnitDTO
- Applied in changeset commit:cdmlib|e0089f681023c823ee9424dfe2ac550065414474.
- 12:11 PM feature request #9258 (Closed): Use Partial for date in FieldUnitDTO
- FieldUnitDTO contains the date as pure string this has at least two problems:
* FieldUnitDTOs can not be reliably ... - 12:03 PM task #9253 (In Progress): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- 08:59 AM bug #8423 (Resolved): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- 08:59 AM bug #8423 (Closed): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
10/15/2020
- 09:30 PM bug #8423 (In Progress): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- 03:38 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
- now only the term related tasks are left to do
- 03:36 PM task #9252 (In Progress): Harmonize SpecimenOrOberservationBase related DTOs
- 12:51 PM bug #9257 (Feedback): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type `SpecimenOrObservationType.P...
- 12:14 PM bug #9257 (Closed): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- see FIXME comment in method
- 12:17 PM bug #9256 (Resolved): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
- 11:58 AM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
- mail WB:
ein unangenehmer (und, glaube ich, neuer) Bug in HomotypicGroup.csv:
In der Spalte „TypeSpecimenString... - 12:12 PM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- 11:40 AM bug #9254 (Resolved): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- Applied in changeset commit:cdmlib|5a1fd3284147ad65dc6408afa94956df19fd07e1.
- 11:39 AM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- The request on portal/occurrence/{uuid}/fieldUnitDTO.json with the uuid of a FieldUnit fails with a ClassCast exception
- 11:43 AM task #9255 (New): DerivateDataDTO implement support for TissueSample
- see TODO comment in `public static DerivateDataDTO fromEntity()` at line 62.
- 11:09 AM task #9253 (Closed): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- This intended function of `FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection...
10/14/2020
- 02:03 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
- Problems with the current implementations:
* Naming:
* PreservedSpecimenDTO should be named DerivedUnitDTO
...
10/13/2020
- 06:04 PM bug #7606 (Duplicate): compact display of CDM Point data
- closing as duplicate of #3978
- 06:02 PM task #3978 (Closed): Specimenview path: Compact representation of exactLocation
- 06:02 PM task #3978 (Resolved): Specimenview path: Compact representation of exactLocation
- 06:00 PM task #9251 (New): Specimenview path: better representation of RecordBasis
- Copied from #3978
Hallo Andreas,
Bei der Specimenanzeige gäbe es glaube ich noch einige einfache Verbesserung...
10/12/2020
- 06:02 PM discussion #7917: Revise ReferenceSystemTerms
- I checked the usage of ReferenceSystemTerms in the production dbs:
~~~
cdm_production_algaterra
-- WGS84
-... - 04:48 PM discussion #7917: Revise ReferenceSystemTerms
- Andreas Kohlbecker wrote:
> I discovered that adding 'gazetteer' was an explicit requirement which was handled in #2... - 03:26 PM feature request #9249 (Closed): compact display of collection information
- 02:22 PM feature request #9249 (Closed): compact display of collection information
- 02:48 PM feature request #9250 (New): collection page implemented
- also enable link rendering in `function render_collection($collection, $do_link = false )` by changing the default if...
- 01:02 PM bug #9248 (New): ABCD import configuration is not fail save for creation of new classification
- When licking on "do not create new classification for new taxa" but missing to define the classification for adding t...
- 09:35 AM bug #9247 (Duplicate): Link with taxon does not work correctly
- mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat ... - 09:24 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
- mail WB:
Hallo,
wir sind ja dabei, mehrere Datenpaper vorzubereiten. Die Formate sind noch nicht ganz klar (hängt...
10/09/2020
- 03:35 PM bug #9245 (Feedback): Creating derived units from existing derived unit is not possible in specimen tree editor
- Trying to add a derived unit to an already existing derived unit is not possible because the menu entry "Add/Hinzufüg...
- 01:56 PM bug #7686 (Closed): Specimen title cache issues in data portal specimen table
- to me it seems as if all issues are fixed now, except for the issue of the missing comma between two specimen type de...
- 01:24 PM feature request #3307: optionally reduce complexity in specimen display
- I think that we rather should work on a better and more concise layout than solving this with a settings option.
- 01:19 PM feature request #2985 (Closed): Improve Specimen details display
- remaining issues and suggestions from comment 23 copied to other issues.
So we can close this issue now. - 12:47 PM feature request #9244 (New): Improve NamedArea page
- copied from #2985#note-23
Show abbrev label, description, named area type, URI, valid period, and maybe also suppl... - 11:27 AM feature request #8854 (Closed): Choose new base font size for the portal
- all suggestions for further improvement have been copied to new tickets (#9242, #9243) and this issue here can thus b...
- 11:24 AM task #9243 (New): zen_dataportal theme: Discuss reduced fontsize of headings
- follow up to #8854
Walter wrote:
> Ansonsten fällt mir hier nur auf, dass die Überschriften (fact categories) e... - 11:19 AM feature request #9242 (New): cdm_taxontree: strategy for better readability
- follow up to #8854
walter wrote:
> caryophyllales_spp: Sieht gut aus, bis auf den Navigator – da wird’s dann zi...
10/08/2020
- 06:48 PM bug #9238 (Resolved): pure entities in DerivateDTO.derivates may cause LIEs
- this should be fully solved now. Ticket can be closed as long as no further problems are popping up during the testing.
- 06:40 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
- The introduction of the SpecimenTypeDesignationDTO causes a couple problems since this dto is quite incomplete so far.
- 06:38 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
- this issue is problematic also in the context of other controller methods where DerivateDTO is being involved.
Ada...
10/06/2020
- 05:25 PM bug #9240: nomenclatural status missing in name and registration page
- Yes, it can be closed. The examples in PhycoBank are displayed perfectly.
- 05:01 PM bug #9240 (Resolved): nomenclatural status missing in name and registration page
- default settings updated.
I think this ticket can be closed.
@Henning: Could you please review? - 01:26 PM bug #9240 (In Progress): nomenclatural status missing in name and registration page
- The
name render part for the nom status was missing in the default render template.
I added this to the phycob... - 11:41 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
- Navicula adminensis has status *nom. illeg* or *nom. superlf.*
https://www.phycobank.org/cdm_dataportal/name/26bd1... - 02:42 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- Example: http://phycobank.org/102598
- 11:27 AM feature request #9209 (Closed): name page, registration page: show annotations for names and fieldunits
- please enter "Etymology: " as prefix to the annotation text.
- 01:41 PM bug #9241 (New): replace/adapt descriptionPart in render templated
- after #6589 is fully solved the display of prologues in the data portal need to be adapted.
The render template de...
10/05/2020
- 01:42 PM feature request #9239 (New): When opening bulk editor via referencing objects view the selected record should have the focus
- ... so that the details view (and other views) are filled automatically
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